Citrus Sinensis ID: 000856

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250--
Protein Sequence
MAEPTTEAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI
Secondary Structure (PSIPRED)
ccccccccccccccHHHHcccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEEcccccccccccccEEEEEcccEEEEEccccccHHHHHHHHHHHccccccEEEEcccccccccHHHHHHHccccccccccccccHHHHHHcccccccHHHHHHHHHHHcHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHccccEEEEcccHHHHHcccEEEEEEccEEEEEcccHHHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEEccccccccccccccEEEccccEEEEEccccccHHHHHHHHHHcccccccEEEEcccccccccHHHHHHHccccccccccccccHHHHHccccccccHHHHHHHHHHHcHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccEEEEEcccccccccccEEEEEEccEEEEEccHHHHHcccccHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccEcccccccEEEEEEEEccccccccccEEEEEEEEccccEEEEEccccccHHHHHHHHcccccccEEEEEEccEEHHHEcHHHHHHHEEEEcccccccccEHHHHHHcccccccHHHHHHHHHHHccHHHHHccccHHHcEcccccccccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEEHcHEccccEEEEEEccEEEEEccHHHHHHcccHHHHHHHHHHcccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEccccccccccEEEEEEEEccccEEEEEccccccHHHHHHHHcccccccEEEEEEccEEHHHEcHHHHHHHEEEEcccccccccEHHHHHHccccccccHHHHHHHHHHccHHHHHccccHHHcEccccccHccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEEHcEEccccEEEEEEccEEEEEccHHHHHHccccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
maeptteaaktlppeaekkkeqslpffqlfsfadkyDWCLMIFGSLGAVIHGSSMPVFFLLFGEMvngfgknqtDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQdvgffdtdartgdiVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYtltgltsksresYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFirngvtdggkAFTAIFSAIVGGmslgqsfsnlgafskgkaAGYKLMEIIkqkpsiiqdptngrcldevngniefknvtfsypsrpdviifrdfsiffpagkTVAVvggsgsgkSTVVSLIErfydpnaghvlldnvdikTLQLRWLRDQiglvnqepalFATTILENilygkpeatMAEVEAAASAANAHSFITllpngystqvgergvqlsgGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVrnrdfanpstrrsrstrlshslstkslslrsgslrnlsysystgadgriEMVSnaetdrknpapdgyFLRLLklnapewpysIMGAIGSvlsgfigpTFAIVMACMIEVFyyrnpasmerkTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNevgwfdeeeHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLslkgfagdtaKAHAKTSmiagegvsniRTVAAFNAQNKILSLFCHelrvpqsqtLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVaetvslapeiirggesvgsvfstldrstridpddpdaepvetirgeielrhvdfaypsrpdvvvfkdfnlriragqsqalvgasgsgkSSVIALIERfydptagkvmidgkdiRRLNLKSLRLKIGlvqqepalfaasifdniaygkegatEAEVVEAARAANVHGFVsalpnayktpvgergvqlsggQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLstirgvdcigvvqdgriveqgshselvsrpdgaySRLLQLQHHHI
Flexible Loop (DISEMBL)
maeptteaaktlppeaekkkeqsLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQkpsiiqdptngrCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRlstirnvdtvaVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVrnrdfanpstrrsrstrlshslstkslslrsgslrNLSYSystgadgrIEMVSnaetdrknpapDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVaetvslapeiirggesvgsvfstldrstridpddpdaepVETIrgeielrhvdfaypsrpDVVVFKDFNLRIRAGqsqalvgasgsgksSVIALIERFydptagkvmidgkdIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVahrlstirgvdcigVVQDGRIVEqgshselvsrpdgAYSRLLQLQHHHI
Low Complexity Region (SEG)
MAEPTTEAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPagktvavvggsgsgkstvvsLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPeatmaeveaaasaanaHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPstrrsrstrlshslstkslslrsgslrnlsysysTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKvikvfvvlvvTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGateaevveaaraanvHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI
Disordered region (IsUnstruct)
***********************LPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMV*****************************************************************GYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVF********************TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVE**************************
Disordered Region (DISOPRED)
***************************QLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLT**********AN*GIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPS***********DEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI************************************************************************YFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLS*****************IAGEGVSNIRTVAAFNAQNKILSLFCHELRV****TLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTL*******************RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH***
Disordered Region (DISEMBL)
*********************QSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDF*********************LSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQ**********SSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI
Disordered Region (DISPRO)
*********************QSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMV***************************************************************PDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHH**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEPTTEAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1252	2.2.26 [Sep-21-2011]
Q9LJX0	1252	ABC transporter B family	yes	no	1.0	1.0	0.891	0.0
Q9ZR72	1286	ABC transporter B family	no	no	0.983	0.957	0.534	0.0
Q8LPK2	1273	ABC transporter B family	no	no	0.973	0.957	0.519	0.0
Q9SGY1	1227	ABC transporter B family	no	no	0.974	0.994	0.509	0.0
Q9C7F8	1245	ABC transporter B family	no	no	0.969	0.975	0.502	0.0
Q9C7F2	1247	ABC transporter B family	no	no	0.970	0.974	0.503	0.0
Q9LSJ5	1225	ABC transporter B family	no	no	0.956	0.977	0.451	0.0
O80725	1286	ABC transporter B family	no	no	0.974	0.948	0.458	0.0
Q9M1Q9	1296	ABC transporter B family	no	no	0.972	0.939	0.451	0.0
Q9LSJ6	1240	ABC transporter B family	no	no	0.964	0.973	0.447	0.0

>sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1

 Score = 2289 bits (5931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1116/1252 (89%), Positives = 1197/1252 (95%)

Query: 1    MAEPTTEAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFL 60
            M+E  T  AKT+P EAEKKKEQSLPFF+LFSFADK+D+ LM  GSLGA++HGSSMPVFFL
Sbjct: 1    MSETNTTDAKTVPAEAEKKKEQSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFL 60

Query: 61   LFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLR 120
            LFG+MVNGFGKNQ D+H+M HEV +Y+LYFVYLGL+VCFSSYAEIACWMY+GERQV+ LR
Sbjct: 61   LFGQMVNGFGKNQMDLHQMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALR 120

Query: 121  KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 180
            KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG
Sbjct: 121  KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 180

Query: 181  FVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY 240
            FVSAW+LALLS+AVIPGIAFAGGLYAYTLTG+TSKSRESYANAG+IAEQAIAQVRTVYSY
Sbjct: 181  FVSAWKLALLSVAVIPGIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSY 240

Query: 241  VGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTD 300
            VGESKALN+YSDAIQ TLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TD
Sbjct: 241  VGESKALNAYSDAIQYTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTD 300

Query: 301  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDE 360
            GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEII Q+P+IIQDP +G+CLD+
Sbjct: 301  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQ 360

Query: 361  VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
            V+GNIEFK+VTFSYPSRPDV+IFR+F+IFFP+GKTVAVVGGSGSGKSTVVSLIERFYDPN
Sbjct: 361  VHGNIEFKDVTFSYPSRPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPN 420

Query: 421  AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAA 480
            +G +LLD V+IKTLQL++LR+QIGLVNQEPALFATTILENILYGKP+ATM EVEAAASAA
Sbjct: 421  SGQILLDGVEIKTLQLKFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAA 480

Query: 481  NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
            NAHSFITLLP GY TQVGERGVQLSGGQKQRIAIARAMLK+PKILLLDEATSALDA SES
Sbjct: 481  NAHSFITLLPKGYDTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSES 540

Query: 541  IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 600
            IVQEALDR+MVGRTTVVVAHRL TIRNVD++AVIQQGQVVETGTHEELIAK+GAYASLIR
Sbjct: 541  IVQEALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYASLIR 600

Query: 601  FQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNA 660
            FQEMV  RDF+NPSTRR+RSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEM+SNA
Sbjct: 601  FQEMVGTRDFSNPSTRRTRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNA 660

Query: 661  ETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNP 720
            ETDRK  AP+ YF RLLKLN+PEWPYSIMGA+GS+LSGFIGPTFAIVM+ MIEVFYY + 
Sbjct: 661  ETDRKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDY 720

Query: 721  ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 780
             SMERKTKE+VFIYIGAGLYAV AYLIQHYFFSIMGENLTTRVRRMML+AILRNEVGWFD
Sbjct: 721  DSMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFD 780

Query: 781  EEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 840
            E+EHNSSL+AARLATDAADVKSAIA+RISVILQNMTSLLTSFIVAFIVEWRVSLLILGT+
Sbjct: 781  EDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTF 840

Query: 841  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELR 900
            PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ+KILSLFCHELR
Sbjct: 841  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELR 900

Query: 901  VPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTA 960
            VPQ ++L RS T+G LFG+SQ AL+ SEALILWYG HLV KGVSTFSKVIKVFVVLV+TA
Sbjct: 901  VPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITA 960

Query: 961  NSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYP 1020
            NSVAETVSLAPEIIRGGE+VGSVFS LDR TRIDPDD DA+PVETIRG+IE RHVDFAYP
Sbjct: 961  NSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRHVDFAYP 1020

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
            SRPDV+VF+DFNLRIRAG SQALVGASGSGKSSVIA+IERFYDP AGKVMIDGKDIRRLN
Sbjct: 1021 SRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLN 1080

Query: 1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT 1140
            LKSLRLKIGLVQQEPALFAA+IFDNIAYGK+GATE+EV++AARAAN HGF+S LP  YKT
Sbjct: 1081 LKSLRLKIGLVQQEPALFAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLPEGYKT 1140

Query: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 1200
            PVGERGVQLSGGQKQRIAIARAVLKNP +LLLDEATSALDAESECVLQEALERLMRGRTT
Sbjct: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRGRTT 1200

Query: 1201 VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI 1252
            V+VAHRLSTIRGVDCIGV+QDGRIVEQGSHSELVSRP+GAYSRLLQLQ H I
Sbjct: 1201 VVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPEGAYSRLLQLQTHRI 1252

Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZR72|AB1B_ARATH ABC transporter B family member 1 OS=Arabidopsis thaliana GN=ABCB1 PE=1 SV=1

 Score = 1350 bits (3494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/1258 (53%), Positives = 919/1258 (73%), Gaps = 27/1258 (2%)

Query: 11   TLPPEAEKKKE-QSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGF 69
            TL  E  KK E + + F +LF FAD  D+ LM  GS+GA +HG S+P+F   F ++VN F
Sbjct: 13   TLVVEEPKKAEIRGVAFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSF 72

Query: 70   GKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLK 129
            G N  ++ KM  EV KYALYF+ +G  +  SS+AEI+CWM++GERQ + +R KYLEA L 
Sbjct: 73   GSNSNNVEKMMEEVLKYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALN 132

Query: 130  QDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLAL 189
            QD+ FFDT+ RT D+VF+++TD ++VQDAISEK+GNFIHY++TF++G +VGF + W+LAL
Sbjct: 133  QDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLAL 192

Query: 190  LSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNS 249
            +++AV+P IA  GG++  TL+ L++KS+ES + AG I EQ + Q+R V ++VGES+A  +
Sbjct: 193  VTLAVVPLIAVIGGIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQA 252

Query: 250  YSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIF 309
            YS A++   KLGYK G+AKG+GLG TY +    +AL+ WY G  +R+ +T+GG A   +F
Sbjct: 253  YSSALKIAQKLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMF 312

Query: 310  SAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKN 369
            + ++GG++LGQS  ++ AF+K K A  K+  II  KP+I ++  +G  LD V G +E KN
Sbjct: 313  AVMIGGLALGQSAPSMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKN 372

Query: 370  VTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV 429
            V FSYPSRPDV I  +F +  PAGKT+A+VG SGSGKSTVVSLIERFYDPN+G VLLD  
Sbjct: 373  VDFSYPSRPDVKILNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQ 432

Query: 430  DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLL 489
            D+KTL+LRWLR QIGLV+QEPALFAT+I ENIL G+P+A   E+E AA  ANAHSFI  L
Sbjct: 433  DLKTLKLRWLRQQIGLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKL 492

Query: 490  PNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL 549
            P+G+ TQVGERG+QLSGGQKQRIAIARAMLKNP ILLLDEATSALD+ SE +VQEALDR 
Sbjct: 493  PDGFDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF 552

Query: 550  MVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA--GAYASLIRFQEMVRN 607
            M+GRTT+++AHRLSTIR  D VAV+QQG V E GTH+EL +K   G YA LI+ QE    
Sbjct: 553  MIGRTTLIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHE 612

Query: 608  RDFAN-------PSTRR--------SRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADG 652
               +N       PS+ R        +R++    S  ++ LS  S S  +LS   S+  + 
Sbjct: 613  TAMSNARKSSARPSSARNSVSSPIMTRNSSYGRSPYSRRLSDFSTSDFSLSIDASSYPNY 672

Query: 653  RIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMI 712
            R E +  A  D+ N      F RL K+N+PEW Y+++G++GSV+ G +   FA V++ ++
Sbjct: 673  RNEKL--AFKDQANS-----FWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVL 725

Query: 713  EVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAIL 772
             V+Y  +   M ++  ++ ++ IG    A+V   +QH F+ I+GENLT RVR  ML+A+L
Sbjct: 726  SVYYNPDHEYMIKQIDKYCYLLIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVL 785

Query: 773  RNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV 832
            +NE+ WFD+EE+ S+ +AARLA DA +V+SAI DRISVI+QN   +L +    F+++WR+
Sbjct: 786  KNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRL 845

Query: 833  SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKIL 892
            +L+++  +P++V A   Q++ + GF+GD   AHAK + +AGE ++N+RTVAAFN++ KI+
Sbjct: 846  ALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIV 905

Query: 893  SLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKV 952
             L+   L  P  +   +   AG  +G++QF L+AS AL LWY   LV  G+S FSK I+V
Sbjct: 906  RLYTANLEPPLKRCFWKGQIAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRV 965

Query: 953  FVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPV-ETIRGEIE 1011
            F+VL+V+AN  AET++LAP+ I+GG+++ SVF  LDR T I+PDDPD  PV + +RGE+E
Sbjct: 966  FMVLMVSANGAAETLTLAPDFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVE 1025

Query: 1012 LRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 1071
            L+H+DF+YPSRPD+ +F+D +LR RAG++ ALVG SG GKSSVI+LI+RFY+P++G+VMI
Sbjct: 1026 LKHIDFSYPSRPDIQIFRDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMI 1085

Query: 1072 DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFV 1131
            DGKDIR+ NLK++R  I +V QEP LF  +I++NIAYG E ATEAE+++AA  A+ H F+
Sbjct: 1086 DGKDIRKYNLKAIRKHIAIVPQEPCLFGTTIYENIAYGHECATEAEIIQAATLASAHKFI 1145

Query: 1132 SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEAL 1191
            SALP  YKT VGERGVQLSGGQKQRIAIARA+++   I+LLDEATSALDAESE  +QEAL
Sbjct: 1146 SALPEGYKTYVGERGVQLSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEAL 1205

Query: 1192 ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELV-SRPDGAYSRLLQLQ 1248
            ++   GRT+++VAHRLSTIR    I V+ DG++ EQGSHS L+ + PDG Y+R++QLQ
Sbjct: 1206 DQACSGRTSIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQLQ 1263

Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates directly in auxin efflux and thus regulates the polar (presumably basipetal) auxin transport (from root tips to root elongating zone). Transports also some auxin metabolites such as oxindoleacetic acid and indoleacetaldehyde. Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Confers resistance to herbicides such as dicamba, pendimethalin, oryzalin, and monosodium acid methanearsonate (MSMA), but not to herbicides such as glyphosate, atrazine, bentazon and fluazifop-p-butyl. Mediates also resistance to xenobiotics such as cycloheximide and the cytokinin N6-(2-isopentenyl)adenine (2IP).

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3

 Score = 1312 bits (3395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1244 (51%), Positives = 891/1244 (71%), Gaps = 25/1244 (2%)

Query: 14   PEAEKKKEQSLP---FFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFG 70
            P  EK+KE + P     +LFSFAD YD  LM  GS+GA IHG+S+P+FF+ FG+++N  G
Sbjct: 47   PAPEKEKEMTQPKVSLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIG 106

Query: 71   KNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQ 130
                   + +H V KY+L FVYL + + FSS+ E+ACWM+TGERQ + +R+ YL ++L Q
Sbjct: 107  LAYLFPKQASHRVAKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSMLSQ 166

Query: 131  DVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALL 190
            D+  FDT+A TG+++ ++++D L+VQDA+SEKVGNF+HY+S F+AG  +GF S W+++L+
Sbjct: 167  DISLFDTEASTGEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLV 226

Query: 191  SIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSY 250
            +++++P IA AGG+YA+   GL ++ R+SY  AG IAE+ I  VRTV ++ GE +A+  Y
Sbjct: 227  TLSIVPLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAVRLY 286

Query: 251  SDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFS 310
             +A++NT K G KAG+ KGLGLG  + +  +SWAL+ W+  V +   + DGGK+FT + +
Sbjct: 287  REALENTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTMLN 346

Query: 311  AIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNV 370
             ++ G+SLGQ+  ++ AF + KAA Y + ++I++         +GR L +V+G+I+FK+ 
Sbjct: 347  VVIAGLSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQFKDA 406

Query: 371  TFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 430
            TFSYPSRPDV+IF   ++  PAGK VA+VGGSGSGKSTV+SLIERFY+P +G VLLD  +
Sbjct: 407  TFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGNN 466

Query: 431  IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLP 490
            I  L ++WLR QIGLVNQEPALFATTI ENILYGK +AT  E+  AA  + A SFI  LP
Sbjct: 467  ISELDIKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNLP 526

Query: 491  NGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 550
             G+ TQVGERG+QLSGGQKQRIAI+RA++KNP ILLLDEATSALDA SE  VQEALDR+M
Sbjct: 527  EGFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVM 586

Query: 551  VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQEMVRNRD 609
            VGRTTVVVAHRLST+RN D +AV+ +G++VE G HE LI+   GAY+SL+R QE    + 
Sbjct: 587  VGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQETASLQR 646

Query: 610  FANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGR--IEMVSNAETDRKNP 667
              NPS  R+ S    HS+            R LS + S+    R  +     A+  +K  
Sbjct: 647  --NPSLNRTLSR--PHSIKYS---------RELSRTRSSFCSERESVTRPDGADPSKKVK 693

Query: 668  APDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKT 727
               G   RL  +  P+W Y + G I + ++G   P FA+ ++  + V YY      +++ 
Sbjct: 694  VTVG---RLYSMIRPDWMYGVCGTICAFIAGSQMPLFALGVSQAL-VSYYSGWDETQKEI 749

Query: 728  KEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSS 787
            K+   ++  A +  ++ Y I+H  F  MGE LT RVR  M  AIL+NE+GWFDE ++ SS
Sbjct: 750  KKIAILFCCASVITLIVYTIEHICFGTMGERLTLRVRENMFRAILKNEIGWFDEVDNTSS 809

Query: 788  LVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLAN 847
            ++A+RL +DA  +K+ + DR +++LQN+  ++TSFI+AFI+ WR++L++L TYPL++  +
Sbjct: 810  MLASRLESDATLLKTIVVDRSTILLQNLGLVVTSFIIAFILNWRLTLVVLATYPLVISGH 869

Query: 848  FAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTL 907
             +++L ++G+ GD  KA+ K +M+AGE VSNIRTVAAF A+ KIL L+  EL  P   + 
Sbjct: 870  ISEKLFMQGYGGDLNKAYLKANMLAGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSF 929

Query: 908  RRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETV 967
            RR   AG+ +G+SQF + +S  L LWYG  L+ KG++ F  V+K F+VL+VTA ++ ET+
Sbjct: 930  RRGQIAGLFYGVSQFFIFSSYGLALWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETL 989

Query: 968  SLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVV 1027
            +LAP++++G + V SVF  LDR T+I  +   +E +  + G IEL+ V F+YPSRPDVV+
Sbjct: 990  ALAPDLLKGNQMVASVFEILDRKTQIVGE--TSEELNNVEGTIELKGVHFSYPSRPDVVI 1047

Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087
            F+DF+L +RAG+S ALVG SGSGKSSVI+LI RFYDPTAGKVMI+GKDI++L+LK+LR  
Sbjct: 1048 FRDFDLIVRAGKSMALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKLDLKALRKH 1107

Query: 1088 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGV 1147
            IGLVQQEPALFA +I++NI YG EGA+++EVVE+A  AN H F+++LP  Y T VGERGV
Sbjct: 1108 IGLVQQEPALFATTIYENILYGNEGASQSEVVESAMLANAHSFITSLPEGYSTKVGERGV 1167

Query: 1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 1207
            Q+SGGQ+QRIAIARA+LKNPAILLLDEATSALD ESE V+Q+AL+RLM  RTTV+VAHRL
Sbjct: 1168 QMSGGQRQRIAIARAILKNPAILLLDEATSALDVESERVVQQALDRLMANRTTVVVAHRL 1227

Query: 1208 STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHH 1251
            STI+  D I V+  G+IVEQGSH +LV    G Y +L+ LQ   
Sbjct: 1228 STIKNADTISVLHGGKIVEQGSHRKLVLNKSGPYFKLISLQQQQ 1271

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SGY1|AB10B_ARATH ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2

 Score = 1309 bits (3387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/1254 (50%), Positives = 904/1254 (72%), Gaps = 34/1254 (2%)

Query: 3    EPTTEAAKTLPPEAEK-KKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLL 61
            +P+ + A      AEK KK  S+ F +LFSFAD YD  LM  GS+GA IHG+S+PVFF+ 
Sbjct: 2    QPSNDPAIVDMAAAEKEKKRPSVSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIF 61

Query: 62   FGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRK 121
            FG+++N  G       + +H+V KY+L FVYL +++ FSS+ E+ACWM+TGERQ + +RK
Sbjct: 62   FGKLINIIGLAYLFPQEASHKVAKYSLDFVYLSVVILFSSWLEVACWMHTGERQAAKIRK 121

Query: 122  KYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGF 181
             YL ++L QD+  FDT+  TG+++ +++++ L+VQDAISEKVGNF+H++S F+AG  +GF
Sbjct: 122  AYLRSMLSQDISLFDTEISTGEVISAITSEILVVQDAISEKVGNFMHFISRFIAGFAIGF 181

Query: 182  VSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYV 241
             S W+++L++++++P IA AGG+YA+  +GL  + R+SY  A  IAE+ I  VRTV ++ 
Sbjct: 182  ASVWQISLVTLSIVPFIALAGGIYAFVSSGLIVRVRKSYVKANEIAEEVIGNVRTVQAFT 241

Query: 242  GESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDG 301
            GE KA++SY  A++NT   G KAG+AKGLGLG  + +  +SWAL+ W+  + +  G+ +G
Sbjct: 242  GEEKAVSSYQGALRNTYNYGRKAGLAKGLGLGSLHFVLFLSWALLIWFTSIVVHKGIANG 301

Query: 302  GKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEV 361
            G++FT + + ++ G+SLGQ+  ++  F +  AA Y + ++I++     +D T GR L  V
Sbjct: 302  GESFTTMLNVVIAGLSLGQAAPDISTFMRASAAAYPIFQMIERNT---EDKT-GRKLGNV 357

Query: 362  NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 421
            NG+I FK+VTF+YPSRPDV+IF   +   PAGK VA+VGGSGSGKST++SLIERFY+P  
Sbjct: 358  NGDILFKDVTFTYPSRPDVVIFDKLNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPTD 417

Query: 422  GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAAN 481
            G V+LD  DI+ L L+WLR  IGLVNQEP LFATTI ENI+YGK +AT  E+  AA  + 
Sbjct: 418  GAVMLDGNDIRYLDLKWLRGHIGLVNQEPVLFATTIRENIMYGKDDATSEEITNAAKLSE 477

Query: 482  AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 541
            A SFI  LP G+ TQVGERG+QLSGGQKQRI+I+RA++KNP ILLLDEATSALDA SE I
Sbjct: 478  AISFINNLPEGFETQVGERGIQLSGGQKQRISISRAIVKNPSILLLDEATSALDAESEKI 537

Query: 542  VQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIR 600
            VQEALDR+MVGRTTVVVAHRLST+RN D +AV+  G+++E+G+H+ELI+   GAY+SL+R
Sbjct: 538  VQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISNPDGAYSSLLR 597

Query: 601  FQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNA 660
             QE              + S  L+H   T SL + +  L  L  + +T +    + V+  
Sbjct: 598  IQE--------------AASPNLNH---TPSLPVSTKPLPELPITETTSSIH--QSVNQP 638

Query: 661  ETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNP 720
            +T ++     G   RL  +  P+W Y + G +GS ++G   P FA+ +A  + V YY + 
Sbjct: 639  DTTKQAKVTVG---RLYSMIRPDWKYGLCGTLGSFIAGSQMPLFALGIAQAL-VSYYMDW 694

Query: 721  ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 780
             + + + K    ++    +  V+ + I+H  F IMGE LT RVR+ M +AILRNE+GWFD
Sbjct: 695  ETTQNEVKRISILFCCGSVITVIVHTIEHTTFGIMGERLTLRVRQKMFSAILRNEIGWFD 754

Query: 781  EEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 840
            + ++ SS++A+RL +DA  +++ + DR +++L+N+  ++T+FI++FI+ WR++L++L TY
Sbjct: 755  KVDNTSSMLASRLESDATLLRTIVVDRSTILLENLGLVVTAFIISFILNWRLTLVVLATY 814

Query: 841  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELR 900
            PL++  + ++++ ++G+ G+ +KA+ K +M+AGE +SNIRTV AF A+ K+L L+  EL 
Sbjct: 815  PLIISGHISEKIFMQGYGGNLSKAYLKANMLAGESISNIRTVVAFCAEEKVLDLYSKELL 874

Query: 901  VPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTA 960
             P  ++ RR   AGIL+G+SQF + +S  L LWYG  L+ KG+S+F  V+K F+VL+VTA
Sbjct: 875  EPSERSFRRGQMAGILYGVSQFFIFSSYGLALWYGSILMEKGLSSFESVMKTFMVLIVTA 934

Query: 961  NSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYP 1020
              + E ++LAP++++G + V SVF  LDR T++  D    E +  + G IEL+ V F+YP
Sbjct: 935  LVMGEVLALAPDLLKGNQMVVSVFELLDRRTQVVGD--TGEELSNVEGTIELKGVHFSYP 992

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
            SRPDV +F DFNL + +G+S ALVG SGSGKSSV++L+ RFYDPTAG +MIDG+DI++L 
Sbjct: 993  SRPDVTIFSDFNLLVPSGKSMALVGQSGSGKSSVLSLVLRFYDPTAGIIMIDGQDIKKLK 1052

Query: 1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT 1140
            LKSLR  IGLVQQEPALFA +I++NI YGKEGA+E+EV+EAA+ AN H F+S+LP  Y T
Sbjct: 1053 LKSLRRHIGLVQQEPALFATTIYENILYGKEGASESEVMEAAKLANAHSFISSLPEGYST 1112

Query: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 1200
             VGERG+Q+SGGQ+QRIAIARAVLKNP ILLLDEATSALD ESE V+Q+AL+RLMR RTT
Sbjct: 1113 KVGERGIQMSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMRDRTT 1172

Query: 1201 VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH---HH 1251
            V+VAHRLSTI+  D I V+QDG+I+EQGSH+ LV   +G YS+L+ LQ    HH
Sbjct: 1173 VVVAHRLSTIKNSDMISVIQDGKIIEQGSHNILVENKNGPYSKLISLQQRQRHH 1226

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7F8|AB13B_ARATH ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1

 Score = 1253 bits (3241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1228 (50%), Positives = 867/1228 (70%), Gaps = 14/1228 (1%)

Query: 23   SLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHE 82
            S+    LFS ADK D+ LM+ G LGA IHG+++P+FF+ FG+M++  G   TD   ++  
Sbjct: 29   SVSLMGLFSAADKLDYFLMLLGGLGACIHGATLPLFFVFFGKMLDSLGNLSTDPKAISSR 88

Query: 83   VCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTG 142
            V + ALY VYLGL+   S++  ++CWM TGERQ + LR  YL+++L +D+ FFDT+AR  
Sbjct: 89   VSQNALYLVYLGLVNFVSAWIGVSCWMQTGERQTARLRINYLKSILAKDITFFDTEARDS 148

Query: 143  DIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAG 202
            +++F +S+D +LVQDAI +K  + + YLS F+AG V+GF+S W+L LL++ V+P IA AG
Sbjct: 149  NLIFHISSDAILVQDAIGDKTDHVLRYLSQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAG 208

Query: 203  GLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGY 262
            G YA  ++ ++ KS  +YA+AG +AE+ ++QVRTVY++VGE KA+ SYS++++  LKLG 
Sbjct: 209  GGYAIVMSTISEKSETAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLGK 268

Query: 263  KAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSF 322
            ++G+AKGLG+G TY +   +WAL+ WYA + +R+G T+G KAFT I + I  G +LGQ+ 
Sbjct: 269  RSGLAKGLGVGLTYSLLFCAWALLLWYASLLVRHGKTNGAKAFTTILNVIFSGFALGQAA 328

Query: 323  SNLGAFSKGKAAGYKLMEIIKQKPS-IIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVI 381
             +L A +KG+ A   +  +I    S   Q    G  L  V G IEF+ V+F+YPSRP+ +
Sbjct: 329  PSLSAIAKGRVAAANIFRMIGNNNSESSQRLDEGTTLQNVAGRIEFQKVSFAYPSRPN-M 387

Query: 382  IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 441
            +F + S    +GKT A VG SGSGKST++S+++RFY+PN+G +LLD  DIK+L+L+W R+
Sbjct: 388  VFENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEILLDGNDIKSLKLKWFRE 447

Query: 442  QIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERG 501
            Q+GLV+QEPALFATTI  NIL GK  A M ++  AA AANA SFI  LPNGY+TQVGE G
Sbjct: 448  QLGLVSQEPALFATTIASNILLGKENANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGG 507

Query: 502  VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHR 561
             QLSGGQKQRIAIARA+L+NPKILLLDEATSALDA SE IVQ+ALD +M  RTT+VVAHR
Sbjct: 508  TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVVAHR 567

Query: 562  LSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRST 621
            LSTIRNVD + V++ GQV ETG+H EL+ + G YA+L+  QE           T    ++
Sbjct: 568  LSTIRNVDKIVVLRDGQVRETGSHSELMLRGGDYATLVNCQE-----------TEPQENS 616

Query: 622  RLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNA 681
            R   S + KS +  S S R  S   ++      E   N ++ +   +       L+KLN+
Sbjct: 617  RSIMSETCKSQAGSSSSRRVSSSRRTSSFRVDQEKTKNDDSKKDFSSSS-MIWELIKLNS 675

Query: 682  PEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYA 741
            PEWPY+++G+IG+VL+G   P F++ +A ++  FY   P  ++R  ++   I+ GAG+  
Sbjct: 676  PEWPYALLGSIGAVLAGAQTPLFSMGIAYVLTAFYSPFPNVIKRDVEKVAIIFAGAGIVT 735

Query: 742  VVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVK 801
               YL+QHYF+++MGE LT+RVR  + +AIL NE+GWFD +E+N+  + + LA DA  V+
Sbjct: 736  APIYLLQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLVR 795

Query: 802  SAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDT 861
            SA+ADR+S I+QN++  +T+  +AF   WRV+ ++   +PLL+ A+  +QL LKGF GD 
Sbjct: 796  SALADRLSTIVQNLSLTVTALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGDY 855

Query: 862  AKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQ 921
             +A+++ + +A E ++NIRTVAA+ A+ +I   F  EL  P      R   +G  +G+SQ
Sbjct: 856  TRAYSRATSVAREAIANIRTVAAYGAEKQISEQFTCELSKPTKNAFVRGHISGFGYGLSQ 915

Query: 922  FALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVG 981
            F    S AL LWY   L+    + F   IK F+VL+VTA SV+ET++L P+I++G +++G
Sbjct: 916  FLAFCSYALGLWYVSVLINHKETNFGDSIKSFMVLIVTAFSVSETLALTPDIVKGTQALG 975

Query: 982  SVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQ 1041
            SVF  L R T+I PD P++  V  ++G+IE R+V F YP+RP++ +FK+ NLR+ AG+S 
Sbjct: 976  SVFRVLHRETKISPDQPNSRMVSQVKGDIEFRNVSFVYPTRPEIDIFKNLNLRVSAGKSL 1035

Query: 1042 ALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAAS 1101
            A+VG SGSGKS+VI LI RFYDP+ G + IDG+DI+ LNL+SLR K+ LVQQEPALF+ +
Sbjct: 1036 AVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGQDIKTLNLRSLRKKLALVQQEPALFSTT 1095

Query: 1102 IFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161
            I++NI YG E A+EAE++EAA+AAN H F+  +   YKT  G++GVQLSGGQKQR+AIAR
Sbjct: 1096 IYENIKYGNENASEAEIMEAAKAANAHEFIIKMEEGYKTHAGDKGVQLSGGQKQRVAIAR 1155

Query: 1162 AVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 1221
            AVLK+P++LLLDEATSALD  SE ++QEAL++LM+GRTTVLVAHRLSTIR  D + V+  
Sbjct: 1156 AVLKDPSVLLLDEATSALDTSSEKLVQEALDKLMKGRTTVLVAHRLSTIRKADTVAVLHK 1215

Query: 1222 GRIVEQGSHSELVSRPDGAYSRLLQLQH 1249
            GR+VE+GSH ELVS P+G Y +L  LQ 
Sbjct: 1216 GRVVEKGSHRELVSIPNGFYKQLTSLQE 1243

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7F2|AB14B_ARATH ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1

 Score = 1227 bits (3175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/1228 (50%), Positives = 863/1228 (70%), Gaps = 13/1228 (1%)

Query: 23   SLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHE 82
            S+    LFS AD  D+ LM  G LG  IHG ++P+FF+ FG M++  GK  TD + ++  
Sbjct: 30   SVSLMGLFSAADNVDYFLMFLGGLGTCIHGGTLPLFFVFFGGMLDSLGKLSTDPNAISSR 89

Query: 83   VCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTG 142
            V + ALY VYLGL+   S++  +ACWM TGERQ + LR  YL+++L +D+ FFDT+AR  
Sbjct: 90   VSQNALYLVYLGLVNLVSAWIGVACWMQTGERQTARLRINYLKSILAKDITFFDTEARDS 149

Query: 143  DIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAG 202
            + +F +S+D +LVQDAI +K G+ + YL  F+AG V+GF+S W+L LL++ V+P IA AG
Sbjct: 150  NFIFHISSDAILVQDAIGDKTGHVLRYLCQFIAGFVIGFLSVWQLTLLTLGVVPLIAIAG 209

Query: 203  GLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGY 262
            G YA  ++ ++ KS  +YA+AG +AE+ ++QVRTVY++VGE KA+ SYS++++  LKL  
Sbjct: 210  GGYAIVMSTISEKSEAAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSLKKALKLSK 269

Query: 263  KAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSF 322
            ++G+AKGLG+G TY +   +WAL+FWYA + +R+G T+G KAFT I + I  G +LGQ+ 
Sbjct: 270  RSGLAKGLGVGLTYSLLFCAWALLFWYASLLVRHGKTNGAKAFTTILNVIYSGFALGQAV 329

Query: 323  SNLGAFSKGKAAGYKLMEII-KQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVI 381
             +L A SKG+ A   + ++I        +   NG  L  V G IEF  V+F+YPSRP+ +
Sbjct: 330  PSLSAISKGRVAAANIFKMIGNNNLESSERLENGTTLQNVVGKIEFCGVSFAYPSRPN-M 388

Query: 382  IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 441
            +F + S    +GKT A VG SGSGKST++S+++RFY+P +G +LLD  DIK L+L+WLR+
Sbjct: 389  VFENLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDIKNLKLKWLRE 448

Query: 442  QIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERG 501
            Q+GLV+QEPALFATTI  NIL GK +A M ++  AA AANA SFI  LPNGY+TQVGE G
Sbjct: 449  QMGLVSQEPALFATTIASNILLGKEKANMDQIIEAAKAANADSFIKSLPNGYNTQVGEGG 508

Query: 502  VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHR 561
             QLSGGQKQRIAIARA+L+NPKILLLDEATSALDA SE IVQ+ALD +M  RTT+V+AHR
Sbjct: 509  TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKRTTIVIAHR 568

Query: 562  LSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRST 621
            LSTIRNVD + V++ GQV ETG+H ELI++ G YA+L+  Q+     +  +      RS 
Sbjct: 569  LSTIRNVDKIVVLRDGQVRETGSHSELISRGGDYATLVNCQDTEPQENLRSVMYESCRSQ 628

Query: 622  RLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNA 681
              S+S      S R+ S R         + G  +++S++               L+KLNA
Sbjct: 629  AGSYSSRRVFSSRRTSSFREDQEKTEKDSKGE-DLISSSSM----------IWELIKLNA 677

Query: 682  PEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYA 741
            PEW Y+++G+IG+VL+G     F++ +A ++  FY   P+ ++R+  +   I++GAG+  
Sbjct: 678  PEWLYALLGSIGAVLAGSQPALFSMGLAYVLTTFYSPFPSLIKREVDKVAIIFVGAGIVT 737

Query: 742  VVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVK 801
               Y++QHYF+++MGE LT+RVR  + +AIL NE+GWFD +E+N+  + + LA DA  V+
Sbjct: 738  APIYILQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSILAADATLVR 797

Query: 802  SAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDT 861
            SAIADR+S I+QN++  +T+  +AF   WRV+ ++   +PLL+ A+  +QL LKGF GD 
Sbjct: 798  SAIADRLSTIVQNLSLTITALALAFFYSWRVAAVVTACFPLLIAASLTEQLFLKGFGGDY 857

Query: 862  AKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQ 921
             +A+++ + +A E +SNIRTVAAF+A+ +I   F  EL  P    L R   +G  +G+SQ
Sbjct: 858  TRAYSRATSLAREAISNIRTVAAFSAEKQISEQFTCELSKPTKSALLRGHISGFGYGLSQ 917

Query: 922  FALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVG 981
                 S AL LWY   L+ +  + F   IK F+VL+VTA SVAET++L P+I++G +++G
Sbjct: 918  CLAFCSYALGLWYISVLIKRNETNFEDSIKSFMVLLVTAYSVAETLALTPDIVKGTQALG 977

Query: 982  SVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQ 1041
            SVF  L R T I PD P++  V  I+G+IE R+V FAYP+RP++ +FK+ NLR+ AG+S 
Sbjct: 978  SVFRVLHRETEIPPDQPNSRLVTHIKGDIEFRNVSFAYPTRPEIAIFKNLNLRVSAGKSL 1037

Query: 1042 ALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAAS 1101
            A+VG SGSGKS+VI LI RFYDP+ G + IDG DI+ +NL+SLR K+ LVQQEPALF+ S
Sbjct: 1038 AVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGHDIKSVNLRSLRKKLALVQQEPALFSTS 1097

Query: 1102 IFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161
            I +NI YG E A+EAE++EAA+AAN H F+S +   Y T VG++GVQLSGGQKQR+AIAR
Sbjct: 1098 IHENIKYGNENASEAEIIEAAKAANAHEFISRMEEGYMTHVGDKGVQLSGGQKQRVAIAR 1157

Query: 1162 AVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 1221
            AVLK+P++LLLDEATSALD  +E  +QEAL++LM+GRTT+LVAHRLSTIR  D I V+  
Sbjct: 1158 AVLKDPSVLLLDEATSALDTSAEKQVQEALDKLMKGRTTILVAHRLSTIRKADTIVVLHK 1217

Query: 1222 GRIVEQGSHSELVSRPDGAYSRLLQLQH 1249
            G++VE+GSH ELVS+ DG Y +L  LQ 
Sbjct: 1218 GKVVEKGSHRELVSKSDGFYKKLTSLQE 1245

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSJ5|AB18B_ARATH ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1

 Score = 1109 bits (2868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/1236 (45%), Positives = 819/1236 (66%), Gaps = 39/1236 (3%)

Query: 29   LFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYAL 88
            +F  AD  DW LM  G +GAV  G   P+ F +  +++N  G +  D       V K A+
Sbjct: 11   IFMHADGVDWMLMALGLIGAVGDGFITPIIFFICSKLLNNVGGSSFDDETFMQTVAKNAV 70

Query: 89   YFVYLGL---IVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTD-ARTGDI 144
              VY+     ++CF    E  CW  TGERQ + +R+KYL+AVL+QDVG+FD     T D+
Sbjct: 71   ALVYVACASWVICF---IEGYCWTRTGERQAAKMREKYLKAVLRQDVGYFDLHVTSTSDV 127

Query: 145  VFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGL 204
            + SVS+D+L++QD +SEK+ NF+   S F+A  +VGF+  WRL ++    I  +   G +
Sbjct: 128  ITSVSSDSLVIQDFLSEKLPNFLMNTSAFVASYIVGFLLLWRLTIVGFPFIILLLIPGLM 187

Query: 205  YAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKA 264
            Y   L  ++ K RE Y  AG IAEQ I+ VRTVY++  E K +  +S A+Q ++KLG + 
Sbjct: 188  YGRALIRISMKIREEYNEAGSIAEQVISSVRTVYAFGSEKKMIEKFSTALQGSVKLGLRQ 247

Query: 265  GMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSN 324
            G+AKG+ +G + GI    W  + WY    + N  + GG   + I     GG SLGQS SN
Sbjct: 248  GLAKGIAIG-SNGITYAIWGFLTWYGSRMVMNHGSKGGTVSSVIVCVTFGGTSLGQSLSN 306

Query: 325  LGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFR 384
            L  FS+    G ++M++I + P I  D   G+ L++  G +EF +V F+YPSRP+  IF 
Sbjct: 307  LKYFSEAFVVGERIMKVINRVPGIDSDNLEGQILEKTRGEVEFNHVKFTYPSRPETPIFD 366

Query: 385  DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 444
            D  +  P+GKTVA+VGGSGSGKSTV+SL++RFYDP AG +L+D + I  LQ++WLR Q+G
Sbjct: 367  DLCLRVPSGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGLPINKLQVKWLRSQMG 426

Query: 445  LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQL 504
            LV+QEP LFAT+I ENIL+GK +A+M EV  AA A+NAHSFI+  PN Y TQVGERGVQL
Sbjct: 427  LVSQEPVLFATSIKENILFGKEDASMDEVVEAAKASNAHSFISQFPNSYQTQVGERGVQL 486

Query: 505  SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLST 564
            SGGQKQRIAIARA++K+P ILLLDEATSALD+ SE +VQEALD   +GRTT+V+AHRLST
Sbjct: 487  SGGQKQRIAIARAIIKSPIILLLDEATSALDSESERVVQEALDNASIGRTTIVIAHRLST 546

Query: 565  IRNVDTVAVIQQGQVVETGTHEELIAK-AGAYASLIRFQEMVRNRDFANPSTRRSRSTRL 623
            IRN D + V+  G+++ETG+HEEL+ K  G Y SL+R Q+ V N++  + S    +++ L
Sbjct: 547  IRNADVICVVHNGRIIETGSHEELLEKLDGQYTSLVRLQQ-VDNKESDHISVEEGQASSL 605

Query: 624  SHSLSTKSLSLRSGSLRNLSYS-----YSTGADGRIEMVSNAETDRKNPAPDGYFLRLLK 678
            S               ++L YS     +ST ++   +  + +  D K+  P   F RL+ 
Sbjct: 606  S---------------KDLKYSPKEFIHSTSSNIVRDFPNLSPKDGKSLVPS--FKRLMS 648

Query: 679  LNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAG 738
            +N PEW +++ G +G+ L G + P ++     M+ V++  +   ++ KT+ +V +++G  
Sbjct: 649  MNRPEWKHALYGCLGAALFGAVQPIYSYSSGSMVSVYFLASHDQIKEKTRIYVLLFVGLA 708

Query: 739  LYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAA 798
            L+  ++ + QHY F+ MGE LT R+R  ML  IL  EV WFD++E++S  + +RLA DA 
Sbjct: 709  LFTFLSNISQHYGFAYMGEYLTKRIRERMLGKILTFEVNWFDKDENSSGAICSRLAKDAN 768

Query: 799  DVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFA 858
             V+S + DR+S+++Q ++++  +  +  ++ WR S++++   P++V+  + Q++ LK  +
Sbjct: 769  MVRSLVGDRMSLLVQTISAVSITCAIGLVISWRFSIVMMSVQPVIVVCFYTQRVLLKSMS 828

Query: 859  GDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFG 918
             +  K   ++S +A E VSNIRT+ AF++Q +I++L       P+  + R+S  AGI+ G
Sbjct: 829  RNAIKGQDESSKLAAEAVSNIRTITAFSSQERIINLLKMVQEGPRKDSARQSWLAGIMLG 888

Query: 919  ISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGE 978
             SQ  +    AL  WYG  L+  G     + +++F++   T   +AE  ++  ++++G +
Sbjct: 889  TSQSLITCVSALNFWYGGKLIADGKMMSKEFLEIFLIFASTGRVIAEAGTMTKDLVKGSD 948

Query: 979  SVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAG 1038
            +V SVF+ LDR+T I+P++PD    + ++G+I   +VDFAYP+RPDV++F++F++ I  G
Sbjct: 949  AVASVFAVLDRNTTIEPENPDGYVPKKVKGQISFSNVDFAYPTRPDVIIFQNFSIDIEDG 1008

Query: 1039 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALF 1098
            +S A+VG SGSGKS++I+LIERFYDP  G V IDG+DIR  +L+SLR  I LV QEP LF
Sbjct: 1009 KSTAIVGPSGSGKSTIISLIERFYDPLKGIVKIDGRDIRSCHLRSLRQHIALVSQEPTLF 1068

Query: 1099 AASIFDNIAYGKEGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154
            A +I +NI YG  GA+    E+E++EAA+AAN H F+++L N Y T  G+RGVQLSGGQK
Sbjct: 1069 AGTIRENIMYG--GASNKIDESEIIEAAKAANAHDFITSLSNGYDTCCGDRGVQLSGGQK 1126

Query: 1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVD 1214
            QRIAIARAVLKNP++LLLDEATSALD++SE V+Q+ALERLM GRT+V++AHRLSTI+  D
Sbjct: 1127 QRIAIARAVLKNPSVLLLDEATSALDSQSESVVQDALERLMVGRTSVVIAHRLSTIQKCD 1186

Query: 1215 CIGVVQDGRIVEQGSHSELVSR-PDGAYSRLLQLQH 1249
             I V+++G +VE G+HS L+++ P GAY  L+ LQ 
Sbjct: 1187 TIAVLENGAVVECGNHSSLLAKGPKGAYFSLVSLQR 1222

Arabidopsis thaliana (taxid: 3702)

>sp|O80725|AB4B_ARATH ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1

 Score = 1103 bits (2853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/1243 (45%), Positives = 826/1243 (66%), Gaps = 23/1243 (1%)

Query: 23   SLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHE 82
            ++PF++LF+FAD +D+ LMI G+LG++ +G   P+  LLFG++++ FG+NQT+    T +
Sbjct: 45   TVPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGENQTN---TTDK 101

Query: 83   VCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTG 142
            V K AL FV+LG+    +++ +++ WM +GERQ + +R  YL+ +L+QD+ FFD D  TG
Sbjct: 102  VSKVALKFVWLGIGTFAAAFLQLSGWMISGERQAARIRSLYLKTILRQDIAFFDIDTNTG 161

Query: 143  DIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAG 202
            ++V  +S DT+L+QDA+ EKVG  I  L+TF+ G V+ FV  W L L+ ++ IP +  AG
Sbjct: 162  EVVGRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLVMLSSIPLLVMAG 221

Query: 203  GLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGY 262
             L A  +    S+ + +YA A  + EQ I  +RTV S+ GE +A+++Y+  +    K G 
Sbjct: 222  ALLAIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNYNKHLVTAYKAGV 281

Query: 263  KAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSF 322
              G + GLGLG  + +   S+AL  WY G  I +    GG+    I + + G MSLGQ+ 
Sbjct: 282  IEGGSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLTGSMSLGQTS 341

Query: 323  SNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVII 382
              L AF+ G+AA YK+ E I+++P+I    TNG+ LD++ G+IE K+V F+YP+RPD  I
Sbjct: 342  PCLSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIELKDVYFTYPARPDEQI 401

Query: 383  FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ 442
            FR FS+F  +G TVA+VG SGSGKSTVVSLIERFYDP AG VL+D +++K  QL+W+R +
Sbjct: 402  FRGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKEFQLKWIRSK 461

Query: 443  IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV 502
            IGLV+QEP LF  +I +NI YGK +AT  E++AAA  ANA  F+  LP G  T VGE G 
Sbjct: 462  IGLVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGLDTMVGEHGT 521

Query: 503  QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL 562
            QLSGGQKQRIA+ARA+LK+P+ILLLDEATSALDA SE +VQEALDR+MV RTTVVVAHRL
Sbjct: 522  QLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRL 581

Query: 563  STIRNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQEMVRNRDFANPSTRRS--- 618
            ST+RN D +AVI QG++VE G+H EL+    GAY+ LIR QE  ++ + A    + S   
Sbjct: 582  STVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEEKKSDENAAEEQKMSSIE 641

Query: 619  -------RSTRLSHSLSTKSLSLRSGSLRNL--SYSYSTGADGRIEMVSNAETDRKNPAP 669
                   R + L  SLS K  S R  S R+    + +  G DG + +    E D   P  
Sbjct: 642  SFKQSSLRKSSLGRSLS-KGGSSRGNSSRHSFNMFGFPAGIDGNV-VQDQEEDDTTQPKT 699

Query: 670  DGY---FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERK 726
            +       R+  LN PE P  I+G+I +  +G I P F I+++ +I+ F ++ P  ++  
Sbjct: 700  EPKKVSIFRIAALNKPEIPVLILGSISAAANGVILPIFGILISSVIKAF-FQPPKKLKED 758

Query: 727  TKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNS 786
            T  +  I++  G  +++AY  Q +FF+I G  L  R+R M    ++  EVGWFDE E++S
Sbjct: 759  TSFWAIIFMVLGFASIIAYPAQTFFFAIAGCKLVQRIRSMCFEKVVHMEVGWFDEPENSS 818

Query: 787  SLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLA 846
              + ARL+ DAA ++  + D ++  +QN++S+L   I+AF+  W+++ ++L   PL+ L 
Sbjct: 819  GTIGARLSADAATIRGLVGDSLAQTVQNLSSILAGLIIAFLACWQLAFVVLAMLPLIALN 878

Query: 847  NFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQT 906
             F     +KGF+ D  K + + S +A + V +IRTVA+F A++K+++++  +   P    
Sbjct: 879  GFLYMKFMKGFSADAKKMYGEASQVANDAVGSIRTVASFCAEDKVMNMYSKKCEGPMKNG 938

Query: 907  LRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAET 966
            +R+ + +GI FG S F L +S A   + G  LV  G +TF  V +VF  L + A +++++
Sbjct: 939  IRQGIVSGIGFGFSFFVLFSSYAASFYVGARLVDDGKTTFDSVFRVFFALTMAAMAISQS 998

Query: 967  VSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVV 1026
             SL+P+  +   +  S+F+ +DR ++IDP       ++ ++G+IELRHV F YP+RPDV 
Sbjct: 999  SSLSPDSSKADVAAASIFAIMDRESKIDPSVESGRVLDNVKGDIELRHVSFKYPARPDVQ 1058

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
            +F+D  L IRAG++ ALVG SGSGKS+VIAL++RFYDP +G++ +DG +I+ L LK LR 
Sbjct: 1059 IFQDLCLSIRAGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEIKSLRLKWLRQ 1118

Query: 1087 KIGLVQQEPALFAASIFDNIAYGKEG-ATEAEVVEAARAANVHGFVSALPNAYKTPVGER 1145
            + GLV QEP LF  +I  NIAYGK G A+E+E+V +A  +N HGF+S L   Y T VGER
Sbjct: 1119 QTGLVSQEPILFNETIRANIAYGKGGDASESEIVSSAELSNAHGFISGLQQGYDTMVGER 1178

Query: 1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 1205
            G+QLSGGQKQR+AIARA++K+P +LLLDEATSALDAESE V+Q+AL+R+M  RTT++VAH
Sbjct: 1179 GIQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTIVVAH 1238

Query: 1206 RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            RLSTI+  D I VV++G IVE+G H  L++  DG Y+ L+QL 
Sbjct: 1239 RLSTIKNADVIAVVKNGVIVEKGKHDTLINIKDGVYASLVQLH 1281

Auxin influx transporter that mediates the transport of auxin in roots. Contributes to the basipetal transport in hypocotyls and root tips by establishing an auxin uptake sink in the root cap. Confers sensitivity to 1-N-naphthylphthalamic acid (NPA). Regulates the root elongation, the initiation of lateral roots and the development of root hairs. Can transports IAA, indole-3-propionic acid, NPA syringic acid, vanillic acid and some auxin metabolites, but not 2,4-D and 1-naphthaleneacetic acid.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1Q9|AB21B_ARATH ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=2

 Score = 1094 bits (2829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 562/1246 (45%), Positives = 812/1246 (65%), Gaps = 28/1246 (2%)

Query: 19   KKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHK 78
            +K +++PF +LF+FAD +D  LMI G++GAV +G   P+  +LFG++++ FG+NQ     
Sbjct: 58   EKTKTVPFHKLFAFADSFDIILMILGTIGAVGNGLGFPIMTILFGDVIDVFGQNQNS-SD 116

Query: 79   MTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTD 138
            ++ ++ K AL FVYLGL    ++  +++ WM +GERQ   +R  YL+ +L+QD+ FFD +
Sbjct: 117  VSDKIAKVALKFVYLGLGTLVAALLQVSGWMISGERQAGRIRSLYLQTILRQDIAFFDVE 176

Query: 139  ARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGI 198
              TG++V  +S DT+L+QDA+ EKVG  I  +STF+ G V+ F   W L L+ ++ IP +
Sbjct: 177  TNTGEVVGRMSGDTVLIQDAMGEKVGKAIQLVSTFIGGFVIAFTEGWLLTLVMVSSIPLL 236

Query: 199  AFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTL 258
              +G   A  ++ + S+ + SYA A ++ EQ +  +RTV S+ GE +A+++Y+  + +  
Sbjct: 237  VMSGAALAIVISKMASRGQTSYAKAAVVVEQTVGSIRTVASFTGEKQAISNYNKHLVSAY 296

Query: 259  KLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSL 318
            + G   G + GLGLG    +   ++AL  WY G  I      GG+    IF+ + G MSL
Sbjct: 297  RAGVFEGASTGLGLGTLNIVIFCTYALAVWYGGKMILEKGYTGGQVLIIIFAVLTGSMSL 356

Query: 319  GQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRP 378
            GQ+   L AF+ G+AA YK+ E IK+KP I    T G+ LD++ G+IE  NV FSYP+RP
Sbjct: 357  GQASPCLSAFAAGQAAAYKMFEAIKRKPEIDASDTTGKVLDDIRGDIELNNVNFSYPARP 416

Query: 379  DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW 438
            +  IFR FS+   +G TVA+VG SGSGKSTVVSLIERFYDP +G V +D +++K  QL+W
Sbjct: 417  EEQIFRGFSLSISSGSTVALVGQSGSGKSTVVSLIERFYDPQSGEVRIDGINLKEFQLKW 476

Query: 439  LRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVG 498
            +R +IGLV+QEP LF ++I ENI YGK  AT+ E+  A   ANA  FI  LP G  T VG
Sbjct: 477  IRSKIGLVSQEPVLFTSSIKENIAYGKENATVEEIRKATELANASKFIDKLPQGLDTMVG 536

Query: 499  ERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVV 558
            E G QLSGGQKQRIA+ARA+LK+P+ILLLDEATSALDA SE IVQEALDR+MV RTTVVV
Sbjct: 537  EHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVV 596

Query: 559  AHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQEMVRNRDFANPSTRR 617
            AHRLST+RN D +AVI QG++VE G+H EL+    GAY+ LIR QE           T++
Sbjct: 597  AHRLSTVRNADMIAVIHQGKIVEKGSHSELLRDPEGAYSQLIRLQE----------DTKQ 646

Query: 618  SRSTRLSHSLSTKSLSLRSGSLRNLS------------YSYSTGADGRIEMVSNAETDRK 665
            +  +     LS +S+   S    +LS            + +  G D   E +   +    
Sbjct: 647  TEDSTDEQKLSMESMKRSSLRKSSLSRSLSKRSSSFSMFGFPAGIDTNNEAIPEKDIKVS 706

Query: 666  NPAPDGY--FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASM 723
             P  +    F R+  LN PE P  I+G+I +VL+G I P F I+++ +I+ F ++ P  +
Sbjct: 707  TPIKEKKVSFFRVAALNKPEIPMLILGSIAAVLNGVILPIFGILISSVIKAF-FKPPEQL 765

Query: 724  ERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEE 783
            +  T+ +  I++  G+ ++V +  Q  FFSI G  L  R+R M    ++R EVGWFDE E
Sbjct: 766  KSDTRFWAIIFMLLGVASMVVFPAQTIFFSIAGCKLVQRIRSMCFEKVVRMEVGWFDETE 825

Query: 784  HNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLL 843
            ++S  + ARL+ DAA V+  + D ++  +QN+ S+    ++AF+  W+++ ++L   PL+
Sbjct: 826  NSSGAIGARLSADAATVRGLVGDALAQTVQNLASVTAGLVIAFVASWQLAFIVLAMLPLI 885

Query: 844  VLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQ 903
             L  +     + GF+ D  + + + S +A + V +IRTVA+F A+ K++ ++  +   P 
Sbjct: 886  GLNGYIYMKFMVGFSADAKRMYEEASQVANDAVGSIRTVASFCAEEKVMKMYKKKCEGPM 945

Query: 904  SQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSV 963
               +R+ + +GI FG+S F L +S A   + G  LV  G +TF  V +VF  L + A ++
Sbjct: 946  RTGIRQGIVSGIGFGVSFFVLFSSYAASFYAGARLVDDGKTTFDSVFRVFFALTMAAVAI 1005

Query: 964  AETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRP 1023
            +++ SL+P+  +   +  S+F+ +DR ++IDP D     ++ ++G+IELRH+ F YPSRP
Sbjct: 1006 SQSSSLSPDSSKASNAAASIFAVIDRESKIDPSDESGRVLDNVKGDIELRHISFKYPSRP 1065

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 1083
            DV +F+D  L IRAG++ ALVG SGSGKS+VIAL++RFYDP +G++ +DG +I+ L LK 
Sbjct: 1066 DVQIFQDLCLSIRAGKTIALVGESGSGKSTVIALLQRFYDPDSGQITLDGVEIKTLQLKW 1125

Query: 1084 LRLKIGLVQQEPALFAASIFDNIAYGKEG-ATEAEVVEAARAANVHGFVSALPNAYKTPV 1142
            LR + GLV QEP LF  +I  NIAYGK G ATE E+V AA  +N HGF+S L   Y T V
Sbjct: 1126 LRQQTGLVSQEPVLFNETIRANIAYGKGGDATETEIVSAAELSNAHGFISGLQQGYDTMV 1185

Query: 1143 GERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVL 1202
            GERGVQLSGGQKQR+AIARA++K+P +LLLDEATSALDAESE V+Q+AL+R+M  RTTV+
Sbjct: 1186 GERGVQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTVV 1245

Query: 1203 VAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            VAHRLSTI+  D I VV++G IVE+G H  L++  DG Y+ L+QL 
Sbjct: 1246 VAHRLSTIKNADVIAVVKNGVIVEKGKHETLINIKDGVYASLVQLH 1291

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSJ6|AB17B_ARATH ABC transporter B family member 17 OS=Arabidopsis thaliana GN=ABCB17 PE=3 SV=1

 Score = 1090 bits (2820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/1229 (44%), Positives = 806/1229 (65%), Gaps = 22/1229 (1%)

Query: 29   LFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYAL 88
            +F  AD  DW LM  G +GAV  G   PV   +F  ++N  G + ++       + K  +
Sbjct: 23   IFMHADGVDWILMALGLIGAVGDGFITPVVVFIFNTLLNNLGTSSSNNKTFMQTISKNVV 82

Query: 89   YFVYLGL---IVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTD-ARTGDI 144
              +Y+     ++CF    E  CW  TGERQ + +R+KYL AVL+QDVG+FD     T D+
Sbjct: 83   ALLYVACGSWVICF---LEGYCWTRTGERQAARMREKYLRAVLRQDVGYFDLHVTSTSDV 139

Query: 145  VFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGL 204
            + S+S+D+L++QD +SEK+ NF+   S F+A  +V F+  WRL ++    I  +   G +
Sbjct: 140  ITSISSDSLVIQDFLSEKLPNFLMNASAFVASYIVSFILMWRLTIVGFPFIILLLVPGLM 199

Query: 205  YAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKA 264
            Y   L  ++ K  E Y  AG IAEQAI+ VRTVY++  E+K +  +S A++ ++KLG + 
Sbjct: 200  YGRALVSISRKIHEQYNEAGSIAEQAISSVRTVYAFGSENKMIGKFSTALRGSVKLGLRQ 259

Query: 265  GMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSN 324
            G+AKG+ +G + G+    WA + WY    + N  + GG  F  I     GG+SLGQS SN
Sbjct: 260  GLAKGITIG-SNGVTHAIWAFLTWYGSRLVMNHGSKGGTVFVVISCITYGGVSLGQSLSN 318

Query: 325  LGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFR 384
            L  FS+   A  +++E+IK+ P I  +   G+ L+ + G +EF +V F+Y SRP+  IF 
Sbjct: 319  LKYFSEAFVAWERILEVIKRVPDIDSNKKEGQILERMKGEVEFNHVKFTYLSRPETTIFD 378

Query: 385  DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 444
            D  +  PAGKTVA+VGGSGSGKSTV+SL++RFYDP AG +L+D V I  LQ+ WLR Q+G
Sbjct: 379  DLCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIAGEILIDGVSIDKLQVNWLRSQMG 438

Query: 445  LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQL 504
            LV+QEP LFAT+I ENIL+GK +A++ EV  AA A+NAH+FI+  P GY TQVGERGVQ+
Sbjct: 439  LVSQEPVLFATSITENILFGKEDASLDEVVEAAKASNAHTFISQFPLGYKTQVGERGVQM 498

Query: 505  SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLST 564
            SGGQKQRIAIARA++K+PKILLLDEATSALD+ SE +VQE+LD   +GRTT+V+AHRLST
Sbjct: 499  SGGQKQRIAIARAIIKSPKILLLDEATSALDSESERVVQESLDNASIGRTTIVIAHRLST 558

Query: 565  IRNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQEMVRNRDFANPSTRRSRSTRL 623
            IRN D + VI  GQ+VETG+HEEL+ +  G Y SL+  Q+M       N +   ++   +
Sbjct: 559  IRNADVICVIHNGQIVETGSHEELLKRIDGQYTSLVSLQQMENEESNVNINVSVTKDQVM 618

Query: 624  SHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPE 683
              SLS      +  S+ + S S  T      +++ N   D +   P   F RL+ +N PE
Sbjct: 619  --SLSKDFKYSQHNSIGSTSSSIVTNVS---DLIPN---DNQPLVPS--FTRLMVMNRPE 668

Query: 684  WPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVV 743
            W +++ G + + L G + P  A     +I VF+  +   ++ KT+ +V +++G  +++ +
Sbjct: 669  WKHALYGCLSAALVGVLQPVSAYSAGSVISVFFLTSHDQIKEKTRIYVLLFVGLAIFSFL 728

Query: 744  AYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSA 803
              + QHY F+ MGE LT R+R  ML+ IL  EV WFD ++++S  + +RLA DA  V+S 
Sbjct: 729  VNISQHYGFAYMGEYLTKRIREQMLSKILTFEVNWFDIDDNSSGAICSRLAKDANVVRSM 788

Query: 804  IADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAK 863
            + DR+S+++Q +++++ + I+  ++ WR++++++   PL+V+  + Q++ LK  +   +K
Sbjct: 789  VGDRMSLLVQTISAVIIACIIGLVIAWRLAIVMISVQPLIVVCFYTQRVLLKSLSEKASK 848

Query: 864  AHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFA 923
            A  ++S +A E VSNIRT+ AF++Q +I+ L       P+ +++ RS  AGI+ G S+  
Sbjct: 849  AQDESSKLAAEAVSNIRTITAFSSQERIIKLLKKVQEGPRRESVHRSWLAGIVLGTSRSL 908

Query: 924  LHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSV 983
            +  + AL  WYG  L+  G        ++F++ V T   +A+  ++  ++ RG ++VGSV
Sbjct: 909  ITCTSALNFWYGGRLIADGKIVSKAFFEIFLIFVTTGRVIADAGTMTTDLARGLDAVGSV 968

Query: 984  FSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQAL 1043
            F+ LDR T I+P +PD    E I+G+I   +VDFAYP+RPDVV+F++F++ I  G+S A+
Sbjct: 969  FAVLDRCTTIEPKNPDGYVAEKIKGQITFLNVDFAYPTRPDVVIFENFSIEIDEGKSTAI 1028

Query: 1044 VGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF 1103
            VG SGSGKS++I LIERFYDP  G V IDG+DIR  +L+SLR  I LV QEP LFA +I 
Sbjct: 1029 VGTSGSGKSTIIGLIERFYDPLKGTVKIDGRDIRSYHLRSLRKYISLVSQEPMLFAGTIR 1088

Query: 1104 DNIAYG--KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161
            +NI YG   +   E+E++EAA+AAN H F+++L N Y T  G++GVQLSGGQKQRIAIAR
Sbjct: 1089 ENIMYGGTSDKIDESEIIEAAKAANAHDFITSLSNGYDTNCGDKGVQLSGGQKQRIAIAR 1148

Query: 1162 AVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 1221
            AVLKNP++LLLDEATSALD++SE V+Q+ALER+M GRT++++AHRLSTI+  D I V+  
Sbjct: 1149 AVLKNPSVLLLDEATSALDSKSERVVQDALERVMVGRTSIMIAHRLSTIQNCDMIVVLGK 1208

Query: 1222 GRIVEQGSHSELVSR-PDGAYSRLLQLQH 1249
            G+IVE G+HS L+ + P G Y  L  +Q 
Sbjct: 1209 GKIVESGTHSSLLEKGPTGTYFSLAGIQR 1237

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1252
255552900	1259	multidrug resistance protein 1, 2, putat	0.996	0.991	0.938	0.0
162280537	1249	LO4 [Solanum pennellii]	0.997	1.0	0.917	0.0
350535719	1249	L04 [Solanum lycopersicum] gi|162280535|	0.997	1.0	0.916	0.0
224140965	1251	multidrug/pheromone exporter, MDR family	0.999	1.0	0.929	0.0
356550795	1249	PREDICTED: ABC transporter B family memb	0.989	0.991	0.929	0.0
356572508	1250	PREDICTED: ABC transporter B family memb	0.998	1.0	0.923	0.0
359488906	1250	PREDICTED: ABC transporter B family memb	0.998	1.0	0.931	0.0
297818508	1252	P-glycoprotein 19 [Arabidopsis lyrata su	1.0	1.0	0.896	0.0
449461923	1250	PREDICTED: ABC transporter B family memb	0.998	1.0	0.916	0.0
15228506	1252	ABC transporter B family member 19 [Arab	1.0	1.0	0.891	0.0

>gi|255552900|ref|XP_002517493.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223543504|gb|EEF45035.1| multidrug resistance protein 1, 2, putative [Ricinus communis]

 Score = 2397 bits (6211), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1171/1248 (93%), Positives = 1211/1248 (97%)

Query: 5    TTEAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGE 64
            T+     LPPEAEKKKEQSLPF+QLFSFAD YDW LMI GS GA+IHGSSMPVFFLLFGE
Sbjct: 12   TSTTKAPLPPEAEKKKEQSLPFYQLFSFADNYDWLLMISGSTGAIIHGSSMPVFFLLFGE 71

Query: 65   MVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYL 124
            MVNGFGKNQ+D+ KMTHEV KYALYFVYLGL+VC SSYAEIACWMYTGERQVSTLRKKYL
Sbjct: 72   MVNGFGKNQSDLTKMTHEVSKYALYFVYLGLVVCLSSYAEIACWMYTGERQVSTLRKKYL 131

Query: 125  EAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSA 184
            EAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSA
Sbjct: 132  EAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSA 191

Query: 185  WRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGES 244
            WRLALLS+AVIPGIAFAGGLYAYTLTGLTSKSRESYA AGIIAEQAIAQVRTVYSYVGES
Sbjct: 192  WRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYAQAGIIAEQAIAQVRTVYSYVGES 251

Query: 245  KALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKA 304
            KALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TDGGKA
Sbjct: 252  KALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKA 311

Query: 305  FTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGN 364
            FTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKP+IIQDP++G+CL E+NGN
Sbjct: 312  FTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIIQDPSDGKCLPEINGN 371

Query: 365  IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
            IEFK+VTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN G V
Sbjct: 372  IEFKDVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNQGQV 431

Query: 425  LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 484
            LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP+ATM EVEAAASAANAHS
Sbjct: 432  LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPDATMDEVEAAASAANAHS 491

Query: 485  FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 544
            FITLLPNGY+TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE
Sbjct: 492  FITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 551

Query: 545  ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEM 604
            ALDRLMVGRTTVVVAHRLSTIRNVDT+AVIQQGQVVETGTHEELI+K  AYASLIRFQEM
Sbjct: 552  ALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGTHEELISKGAAYASLIRFQEM 611

Query: 605  VRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDR 664
            VRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEM+SNAET+R
Sbjct: 612  VRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNAETER 671

Query: 665  KNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASME 724
            KNPAPDGYF RLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVM+ MIEVFYYRNPASME
Sbjct: 672  KNPAPDGYFCRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMSNMIEVFYYRNPASME 731

Query: 725  RKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEH 784
            RKTKE+VFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEH
Sbjct: 732  RKTKEYVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEH 791

Query: 785  NSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLV 844
            NSSLVAARLATDAADVKSAIA+RISVILQNMTSLLTSFIVAFIVEWRVSLLIL T+PLLV
Sbjct: 792  NSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLV 851

Query: 845  LANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQS 904
            LANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ+KILSLFCHEL VPQ 
Sbjct: 852  LANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFCHELSVPQL 911

Query: 905  QTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVA 964
            ++LRRS T+G+LFG+SQ AL+ASEALILWYG HLV KGVSTFSKVIKVFVVLV+TANSVA
Sbjct: 912  RSLRRSQTSGLLFGLSQLALYASEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVA 971

Query: 965  ETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPD 1024
            ETVSLAPEIIRGGE+VGSVFS LDRSTRIDPDDP+AEPVE+IRGEIELRHVDF+YPSRPD
Sbjct: 972  ETVSLAPEIIRGGEAVGSVFSILDRSTRIDPDDPEAEPVESIRGEIELRHVDFSYPSRPD 1031

Query: 1025 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 1084
            V VFKD NLRIRAGQSQALVGASG GKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL
Sbjct: 1032 VPVFKDLNLRIRAGQSQALVGASGCGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 1091

Query: 1085 RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGE 1144
            RLK+GLVQQEPALFAASIFDNI YGKEGATEAEV+EAARAANVHGFVSALP+ YKTPVGE
Sbjct: 1092 RLKVGLVQQEPALFAASIFDNIVYGKEGATEAEVIEAARAANVHGFVSALPDGYKTPVGE 1151

Query: 1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVA 1204
            RGVQLSGGQKQRIAIARAVLK+PAILLLDEATSALDAESECVLQEALERLMRGRTTVLVA
Sbjct: 1152 RGVQLSGGQKQRIAIARAVLKDPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVA 1211

Query: 1205 HRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI 1252
            HRLSTIRGVD IGVVQDGRIVEQGSH+ELVSR DGAYSRLLQLQHHHI
Sbjct: 1212 HRLSTIRGVDSIGVVQDGRIVEQGSHAELVSRGDGAYSRLLQLQHHHI 1259

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|162280537|gb|ABX82929.1| LO4 [Solanum pennellii]

 Score = 2363 bits (6125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1149/1252 (91%), Positives = 1198/1252 (95%), Gaps = 3/1252 (0%)

Query: 1    MAEPTTEAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFL 60
            MAE TTE      PEAEKKKEQSLPF+QLFSFADKYD+ LM  GS+GA++HGSSMPVFFL
Sbjct: 1    MAE-TTEGKSM--PEAEKKKEQSLPFYQLFSFADKYDYLLMTCGSIGAILHGSSMPVFFL 57

Query: 61   LFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLR 120
            LFGEMVNGFGKNQ D+HKMTHEV KYALYFVYLGLIVC SSYAEI CWMYTGERQVS LR
Sbjct: 58   LFGEMVNGFGKNQMDLHKMTHEVSKYALYFVYLGLIVCASSYAEIGCWMYTGERQVSALR 117

Query: 121  KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 180
            KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG
Sbjct: 118  KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 177

Query: 181  FVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY 240
            FVSAWRLALLS+AVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY
Sbjct: 178  FVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY 237

Query: 241  VGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTD 300
            VGE+KALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNG +D
Sbjct: 238  VGETKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQSD 297

Query: 301  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDE 360
            GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKP+I+QD  +G+CL E
Sbjct: 298  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIVQDTLDGKCLSE 357

Query: 361  VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
            V+GNIEFKNVTFSYPSRPDVIIFRDF IFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN
Sbjct: 358  VSGNIEFKNVTFSYPSRPDVIIFRDFCIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 417

Query: 421  AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAA 480
             G VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP+ATMAEVEAA  A+
Sbjct: 418  DGQVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPDATMAEVEAATCAS 477

Query: 481  NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
            NAHSFITLLPNGY+TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES
Sbjct: 478  NAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 537

Query: 541  IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 600
            IVQEALDRLMVGRTTVVVAHRLSTIRNVD++AVIQQGQVVETGTHEELI+KAGAYASLIR
Sbjct: 538  IVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHEELISKAGAYASLIR 597

Query: 601  FQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNA 660
            FQEMV NRDF+NPSTRR+RSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEM+SNA
Sbjct: 598  FQEMVGNRDFSNPSTRRTRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNA 657

Query: 661  ETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNP 720
            ETDRKNPAP  YF RLLKLNAPEWPYSIMGA+GSVLSGFIGPTFAIVM+ MIEVFYY NP
Sbjct: 658  ETDRKNPAPQNYFCRLLKLNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYTNP 717

Query: 721  ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 780
            A+MERKTKE+VFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD
Sbjct: 718  ATMERKTKEYVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 777

Query: 781  EEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 840
            EEE+NSSL+AARLATDAADVKSAIA+RISVILQNMTSLLTSFIVAFIVEWRVSLLIL T+
Sbjct: 778  EEENNSSLLAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATF 837

Query: 841  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELR 900
            PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ KI+SLF  ELR
Sbjct: 838  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQEKIISLFSQELR 897

Query: 901  VPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTA 960
            VPQ Q+LRRS  +G+LFGISQ AL+ SEALILWYG HLV  GVSTFSKVIKVFVVLV+TA
Sbjct: 898  VPQMQSLRRSQMSGLLFGISQLALYGSEALILWYGAHLVNNGVSTFSKVIKVFVVLVITA 957

Query: 961  NSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYP 1020
            NSVAETVSLAPEIIRGGE+VGSVFS LDRSTR+DPDDP+ +PVE+IRG+IELRHVDFAYP
Sbjct: 958  NSVAETVSLAPEIIRGGEAVGSVFSILDRSTRVDPDDPEGDPVESIRGDIELRHVDFAYP 1017

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
            SRPDV VFKD NLRIRAGQSQALVGASGSGKSSVIALIERFYDPT GKVMIDGKDIRRLN
Sbjct: 1018 SRPDVSVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTGGKVMIDGKDIRRLN 1077

Query: 1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT 1140
            LKSLRLKIGLVQQEPALFAASIF+NIAYGKEGATEAEV+EAARAANVH FVS LP  YKT
Sbjct: 1078 LKSLRLKIGLVQQEPALFAASIFENIAYGKEGATEAEVIEAARAANVHTFVSGLPEGYKT 1137

Query: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 1200
            PVGERGVQLSGGQKQRIAIARAVLK+P+ILLLDEATSALDAESECVLQEALERLMRGRTT
Sbjct: 1138 PVGERGVQLSGGQKQRIAIARAVLKDPSILLLDEATSALDAESECVLQEALERLMRGRTT 1197

Query: 1201 VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI 1252
            VLVAHRLSTIR VD IGVVQDGRIVEQGSHSEL+SRP+GAYSRLLQLQHH I
Sbjct: 1198 VLVAHRLSTIRNVDTIGVVQDGRIVEQGSHSELISRPEGAYSRLLQLQHHRI 1249

Source: Solanum pennellii

Species: Solanum pennellii

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535719|ref|NP_001234209.1| L04 [Solanum lycopersicum] gi|162280535|gb|ABX82928.1| L04 [Solanum lycopersicum]

 Score = 2360 bits (6117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1148/1252 (91%), Positives = 1198/1252 (95%), Gaps = 3/1252 (0%)

Query: 1    MAEPTTEAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFL 60
            MAE TTE      PEAEKKKEQSLPF+QLFSFADKYD+ LM  GS+GA++HGSSMPVFFL
Sbjct: 1    MAE-TTEGKSM--PEAEKKKEQSLPFYQLFSFADKYDYLLMTCGSIGAILHGSSMPVFFL 57

Query: 61   LFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLR 120
            LFGEMVNGFGKNQ D+HKMTHEV KYALYFVYLGLIVC SSYAEI CWMYTGERQVS LR
Sbjct: 58   LFGEMVNGFGKNQMDLHKMTHEVSKYALYFVYLGLIVCASSYAEIGCWMYTGERQVSALR 117

Query: 121  KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 180
            KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG
Sbjct: 118  KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 177

Query: 181  FVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY 240
            FVSAWRLALLS+AVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY
Sbjct: 178  FVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY 237

Query: 241  VGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTD 300
            VGE+KALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNG +D
Sbjct: 238  VGETKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQSD 297

Query: 301  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDE 360
            GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKP+I+QD  +G+CL E
Sbjct: 298  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIVQDTLDGKCLSE 357

Query: 361  VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
            V+GNIEFKNVTFSYPSRPDVIIFRDF IFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN
Sbjct: 358  VSGNIEFKNVTFSYPSRPDVIIFRDFCIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 417

Query: 421  AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAA 480
             G VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP+ATMAEVEAA  A+
Sbjct: 418  DGQVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPDATMAEVEAATCAS 477

Query: 481  NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
            NAH+FITLLPNGY+TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES
Sbjct: 478  NAHNFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 537

Query: 541  IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 600
            IVQEALDRLMVGRTTVVVAHRLSTIRNVD++AVIQQGQVVETGTHEELI+KAGAYASLIR
Sbjct: 538  IVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHEELISKAGAYASLIR 597

Query: 601  FQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNA 660
            FQEMV NRDF+NPSTRR+RSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEM+SNA
Sbjct: 598  FQEMVGNRDFSNPSTRRTRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNA 657

Query: 661  ETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNP 720
            ETDRKNPAP  YF RLLKLNAPEWPYSIMGA+GSVLSGFIGPTFAIVM+ MIEVFYY NP
Sbjct: 658  ETDRKNPAPQNYFCRLLKLNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYTNP 717

Query: 721  ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 780
            A+MERKTKE+VFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD
Sbjct: 718  ATMERKTKEYVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 777

Query: 781  EEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 840
            EEE+NSSL+AARLATDAADVKSAIA+RISVILQNMTSLLTSFIVAFIVEWRVSLLIL T+
Sbjct: 778  EEENNSSLLAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATF 837

Query: 841  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELR 900
            PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ KI+SLF  ELR
Sbjct: 838  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQEKIISLFSQELR 897

Query: 901  VPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTA 960
            VPQ Q+LRRS  +G+LFGISQ AL+ SEALILWYG HLV  GVSTFSKVIKVFVVLV+TA
Sbjct: 898  VPQMQSLRRSQMSGLLFGISQLALYGSEALILWYGAHLVNNGVSTFSKVIKVFVVLVITA 957

Query: 961  NSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYP 1020
            NSVAETVSLAPEIIRGGE+VGSVFS LDRSTR+DPDDP+ +PVE+IRG+IELRHVDFAYP
Sbjct: 958  NSVAETVSLAPEIIRGGEAVGSVFSILDRSTRVDPDDPEGDPVESIRGDIELRHVDFAYP 1017

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
            SRPDV VFKD NLRIRAGQSQALVGASGSGKSSVIALIERFYDPT GKVMIDGKDIRRLN
Sbjct: 1018 SRPDVSVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTGGKVMIDGKDIRRLN 1077

Query: 1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT 1140
            LKSLRLKIGLVQQEPALFAASIF+NIAYGKEGATEAEV+EAARAANVH FVS LP  YKT
Sbjct: 1078 LKSLRLKIGLVQQEPALFAASIFENIAYGKEGATEAEVIEAARAANVHTFVSGLPEGYKT 1137

Query: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 1200
            PVGERGVQLSGGQKQRIAIARAVLK+P+ILLLDEATSALDAESECVLQEALERLMRGRTT
Sbjct: 1138 PVGERGVQLSGGQKQRIAIARAVLKDPSILLLDEATSALDAESECVLQEALERLMRGRTT 1197

Query: 1201 VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI 1252
            VLVAHRLSTIR VD IGVVQDGRIVEQGSHSEL+SRP+GAYSRLLQLQHH I
Sbjct: 1198 VLVAHRLSTIRNVDTIGVVQDGRIVEQGSHSELISRPEGAYSRLLQLQHHRI 1249

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140965|ref|XP_002323847.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222866849|gb|EEF03980.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa]

 Score = 2358 bits (6110), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1164/1252 (92%), Positives = 1210/1252 (96%), Gaps = 1/1252 (0%)

Query: 1    MAEPTTEAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFL 60
            MAE TTEA +   PEAEKKKEQSLPF+QLFSFADKYDW LMI GS+GA+IHGSSMPVFFL
Sbjct: 1    MAE-TTEANRPSLPEAEKKKEQSLPFYQLFSFADKYDWLLMISGSIGAIIHGSSMPVFFL 59

Query: 61   LFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLR 120
            LFGEMVNGFGKNQ+D++KMTHEV KYALYFVYLG++VC SSYAEIACWMYTGERQVSTLR
Sbjct: 60   LFGEMVNGFGKNQSDLYKMTHEVSKYALYFVYLGIVVCLSSYAEIACWMYTGERQVSTLR 119

Query: 121  KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 180
            KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG
Sbjct: 120  KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 179

Query: 181  FVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY 240
            FVSAWRLALLS+AVIPGIAFAGGLYAYTLTGLTSKSRESYA AGIIAEQAIAQVRTVYS+
Sbjct: 180  FVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYAQAGIIAEQAIAQVRTVYSF 239

Query: 241  VGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTD 300
            VGESKAL+SY+DAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TD
Sbjct: 240  VGESKALSSYTDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTD 299

Query: 301  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDE 360
            GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQ+PSI QD  +G+CL E
Sbjct: 300  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQRPSITQDAVDGKCLAE 359

Query: 361  VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
            VNGNIEFK+VTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN
Sbjct: 360  VNGNIEFKSVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 419

Query: 421  AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAA 480
             G VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENI YGKP+ATM EVEAA SAA
Sbjct: 420  QGQVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENIRYGKPDATMDEVEAATSAA 479

Query: 481  NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
            NAHSFITLLPNGY+TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA SES
Sbjct: 480  NAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDASSES 539

Query: 541  IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 600
            IVQEALDRLM+GRTTVVVAHRLSTIRNVDT+AVIQQG VVETGTHEELIAKAGAYASLIR
Sbjct: 540  IVQEALDRLMIGRTTVVVAHRLSTIRNVDTIAVIQQGLVVETGTHEELIAKAGAYASLIR 599

Query: 601  FQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNA 660
            FQEMVRNRDFANPSTRRSRS+RLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEM+SNA
Sbjct: 600  FQEMVRNRDFANPSTRRSRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNA 659

Query: 661  ETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNP 720
            ETDRKNPAPDGYF RLLKLNAPEWPYSIMGA+GSVLSGFIGPTFAIVM+ MIEVFYYRNP
Sbjct: 660  ETDRKNPAPDGYFCRLLKLNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYRNP 719

Query: 721  ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 780
            ASMERKTKE+VFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD
Sbjct: 720  ASMERKTKEYVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 779

Query: 781  EEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 840
            EEEHNSSLVAARLATDAADVKSAIA+RISVILQNMTSLLTSFIVAFIVEWRVSLLIL T+
Sbjct: 780  EEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATF 839

Query: 841  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELR 900
            PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ K+LSLFCHELR
Sbjct: 840  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQGKVLSLFCHELR 899

Query: 901  VPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTA 960
            VPQ  +LRRS T+G+LFG+SQ AL+ SEALILWYG HLV KGVSTFSKVIKVFVVLV+TA
Sbjct: 900  VPQLHSLRRSQTSGLLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITA 959

Query: 961  NSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYP 1020
            NSVAETVSLAPEIIRGGE+VGSVFS L+RST+IDPDD +AEPVE++RGEIELRHVDFAYP
Sbjct: 960  NSVAETVSLAPEIIRGGEAVGSVFSILERSTKIDPDDSEAEPVESLRGEIELRHVDFAYP 1019

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
            SRPDV VFKD NLRIRAGQSQALVGASG GKSSVI+LIERFYDP AGKVMIDGKDIRRLN
Sbjct: 1020 SRPDVPVFKDLNLRIRAGQSQALVGASGCGKSSVISLIERFYDPMAGKVMIDGKDIRRLN 1079

Query: 1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT 1140
            LKSLRLKIGLVQQEPALFAASIFDNIAYGK+GATEAEV+EAARAANVHGFVSALP+ YKT
Sbjct: 1080 LKSLRLKIGLVQQEPALFAASIFDNIAYGKDGATEAEVIEAARAANVHGFVSALPDGYKT 1139

Query: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 1200
            PVGERGVQLSGGQKQRIAIARAVLK+PAILLLDEATSALDAESECVLQEALERLMRGRTT
Sbjct: 1140 PVGERGVQLSGGQKQRIAIARAVLKDPAILLLDEATSALDAESECVLQEALERLMRGRTT 1199

Query: 1201 VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI 1252
            VLVAHRLSTIRGVD IGVVQDGRIVEQGSHSELVSRPDGAY RLLQLQHHHI
Sbjct: 1200 VLVAHRLSTIRGVDSIGVVQDGRIVEQGSHSELVSRPDGAYFRLLQLQHHHI 1251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550795|ref|XP_003543769.1| PREDICTED: ABC transporter B family member 19-like [Glycine max]

 Score = 2342 bits (6068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1152/1239 (92%), Positives = 1203/1239 (97%)

Query: 14   PEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQ 73
            PEAEKKKEQ+LPF++LFSFADK DW LMI GS+GA++HGSSMPVFFLLFGEMVNGFGKNQ
Sbjct: 11   PEAEKKKEQTLPFYKLFSFADKCDWMLMISGSIGAIVHGSSMPVFFLLFGEMVNGFGKNQ 70

Query: 74   TDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVG 133
             D+ KMT EV KYALYFVYLGL+VC SSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVG
Sbjct: 71   MDLKKMTEEVSKYALYFVYLGLVVCISSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVG 130

Query: 134  FFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIA 193
            FFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLS+A
Sbjct: 131  FFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVA 190

Query: 194  VIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDA 253
            VIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDA
Sbjct: 191  VIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDA 250

Query: 254  IQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIV 313
            IQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TDGGKAFTAIFSAIV
Sbjct: 251  IQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIV 310

Query: 314  GGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFS 373
            GGMSLGQSFSNLGAFSKGKAAGYKLMEII QKP+I++DP+ G+CL EVNGNIEFK+VTFS
Sbjct: 311  GGMSLGQSFSNLGAFSKGKAAGYKLMEIINQKPTIVEDPSEGKCLAEVNGNIEFKDVTFS 370

Query: 374  YPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT 433
            YPSRPD+ IFR+FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN G VLLDNVDIKT
Sbjct: 371  YPSRPDMFIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEGQVLLDNVDIKT 430

Query: 434  LQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGY 493
            LQL+WLRDQIGLVNQEPALFATTILENILYGKP+ATMAEVEAA SAANAHSFITLLPNGY
Sbjct: 431  LQLKWLRDQIGLVNQEPALFATTILENILYGKPDATMAEVEAATSAANAHSFITLLPNGY 490

Query: 494  STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR 553
            +TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR
Sbjct: 491  NTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR 550

Query: 554  TTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANP 613
            TTVVVAHRLSTIRNVDT+AVIQQGQVVETGTHEELIAKAG YASLIRFQEMV NRDF+NP
Sbjct: 551  TTVVVAHRLSTIRNVDTIAVIQQGQVVETGTHEELIAKAGTYASLIRFQEMVGNRDFSNP 610

Query: 614  STRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYF 673
            STRR+RS+RLSHSLSTKSLSLRSGSLRNLSY YSTGADGRIEM+SNAETD+KNPAPDGYF
Sbjct: 611  STRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYF 670

Query: 674  LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFI 733
             RLLK+NAPEWPYSIMGA+GSVLSGFIGPTFAIVM+ MIEVFY+RN ASMERKTKE+VFI
Sbjct: 671  FRLLKMNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYFRNYASMERKTKEYVFI 730

Query: 734  YIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARL 793
            YIGAGLYAV AYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARL
Sbjct: 731  YIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARL 790

Query: 794  ATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLS 853
            ATDAADVKSAIA+RISVILQNMTSLLTSFIVAFIVEWRVSLLIL T+PLLVLANFAQQLS
Sbjct: 791  ATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLS 850

Query: 854  LKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA 913
            LKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNK+LS+FCHELRVPQSQ+LRRS T+
Sbjct: 851  LKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKMLSVFCHELRVPQSQSLRRSQTS 910

Query: 914  GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEI 973
            G LFG+SQ AL+ASEALILWYG HLV KGVSTFSKVIKVFVVLV+TANSVAETVSLAPEI
Sbjct: 911  GFLFGLSQLALYASEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEI 970

Query: 974  IRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNL 1033
            IRGGE+VGSVFS LDRSTRIDPDDPDA+PVE++RGEIELRHVDFAYPSRPDV+VFKD NL
Sbjct: 971  IRGGEAVGSVFSILDRSTRIDPDDPDADPVESLRGEIELRHVDFAYPSRPDVMVFKDLNL 1030

Query: 1034 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQ 1093
            RIRAGQSQALVGASGSGKSSVIALIERFYDP AGKVM+DGKDIR+LNLKSLRLKIGLVQQ
Sbjct: 1031 RIRAGQSQALVGASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQ 1090

Query: 1094 EPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 1153
            EPALFAASIF+NIAYGKEGATEAEV+EAARAANVHGFVS LP  YKTPVGERGVQLSGGQ
Sbjct: 1091 EPALFAASIFENIAYGKEGATEAEVIEAARAANVHGFVSGLPEGYKTPVGERGVQLSGGQ 1150

Query: 1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGV 1213
            KQRIAIARAVLK+P ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGV
Sbjct: 1151 KQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGV 1210

Query: 1214 DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI 1252
            DCIGVVQDGRIVEQGSHSELVSRP+GAYSRLLQLQHHHI
Sbjct: 1211 DCIGVVQDGRIVEQGSHSELVSRPEGAYSRLLQLQHHHI 1249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572508|ref|XP_003554410.1| PREDICTED: ABC transporter B family member 19-like [Glycine max]

 Score = 2336 bits (6054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1156/1252 (92%), Positives = 1208/1252 (96%), Gaps = 2/1252 (0%)

Query: 1    MAEPTTEAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFL 60
            MAE   E  K LP EAEKKKEQ+LPF++LFSFADK DW LMI GS+GA+IHGSSMPVFFL
Sbjct: 1    MAE-AAEPNKALP-EAEKKKEQTLPFYKLFSFADKCDWMLMISGSIGAIIHGSSMPVFFL 58

Query: 61   LFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLR 120
            LFGEMVNGFGKNQ ++ KMT EV KYALYFVYLGL+VC SSYAEIACWMYTGERQVSTLR
Sbjct: 59   LFGEMVNGFGKNQMNLKKMTEEVSKYALYFVYLGLVVCISSYAEIACWMYTGERQVSTLR 118

Query: 121  KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 180
            KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG
Sbjct: 119  KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 178

Query: 181  FVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY 240
            FVSAWRLALLS+AVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY
Sbjct: 179  FVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY 238

Query: 241  VGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTD 300
            VGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TD
Sbjct: 239  VGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTD 298

Query: 301  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDE 360
            GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEII QKP+I++DP+ G+CL E
Sbjct: 299  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQKPTIVEDPSEGKCLAE 358

Query: 361  VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
            VNGNIEFK+VTFSYPSRPD+ IFR+FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN
Sbjct: 359  VNGNIEFKDVTFSYPSRPDMFIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 418

Query: 421  AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAA 480
             G VLLDNVDIKTLQL+WLRDQIGLVNQEPALFATTILENILYGKP+ATMAEVEAA SAA
Sbjct: 419  EGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATMAEVEAATSAA 478

Query: 481  NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
            NAHSFITLLPNGY+TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE+
Sbjct: 479  NAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSEN 538

Query: 541  IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 600
            IVQEALDRLMVGRTTVVVAHRLSTIRNVDT+AVIQQGQVVETG HEELIAKAG YASLIR
Sbjct: 539  IVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGAHEELIAKAGTYASLIR 598

Query: 601  FQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNA 660
            FQEMV NRDF+NPSTRR+RS+RLSHSLSTKSLSLRSGSLRNLSY YSTGADGRIEM+SNA
Sbjct: 599  FQEMVGNRDFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNA 658

Query: 661  ETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNP 720
            ETD+KNPAPDGYF RLLK+NAPEWPYSIMGA+GSVLSGFIGPTFAIVM+ MIEVFY+ N 
Sbjct: 659  ETDKKNPAPDGYFFRLLKMNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYFSNY 718

Query: 721  ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 780
            ASMERKTKE+VFIYIGAGLYAV AYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD
Sbjct: 719  ASMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 778

Query: 781  EEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 840
            EEEHNSSLVAARLATDAADVKSAIA+RISVILQNMTSLLTSFIVAFIVEWRVSLLIL T+
Sbjct: 779  EEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATF 838

Query: 841  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELR 900
            PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNK+LS+FCHELR
Sbjct: 839  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKMLSVFCHELR 898

Query: 901  VPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTA 960
            VPQSQ+LRRSLT+G LFG+SQ AL+ASEALILWYG HLV KGVSTFSKVIKVFVVLV+TA
Sbjct: 899  VPQSQSLRRSLTSGFLFGLSQLALYASEALILWYGAHLVSKGVSTFSKVIKVFVVLVITA 958

Query: 961  NSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYP 1020
            NSVAETVSLAPEIIRGGE+VGSVFS LDRSTRIDPDDPDA+PVE++RGEIELRHVDFAYP
Sbjct: 959  NSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDPDDPDADPVESLRGEIELRHVDFAYP 1018

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
            SRPDV+VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP AGKVM+DGKDIR+LN
Sbjct: 1019 SRPDVMVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLN 1078

Query: 1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT 1140
            LKSLRLKIGLVQQEPALFAASIF+NIAYGKEGATEAEV+EAARAANVHGFVS LP  YKT
Sbjct: 1079 LKSLRLKIGLVQQEPALFAASIFENIAYGKEGATEAEVIEAARAANVHGFVSGLPEGYKT 1138

Query: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 1200
            PVGERGVQLSGGQKQRIAIARAVLK+P ILLLDEATSALDAESECVLQEALERLMRGRTT
Sbjct: 1139 PVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTT 1198

Query: 1201 VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI 1252
            VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR +GAYSRLLQLQHHHI
Sbjct: 1199 VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRHEGAYSRLLQLQHHHI 1250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488906|ref|XP_002283051.2| PREDICTED: ABC transporter B family member 19-like [Vitis vinifera]

 Score = 2334 bits (6048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1166/1252 (93%), Positives = 1211/1252 (96%), Gaps = 2/1252 (0%)

Query: 1    MAEPTTEAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFL 60
            MAE   EA K LP EAEKKKEQSLPF+QLFSFADKYDW LM+ GS+GAVIHGSSMPVFFL
Sbjct: 1    MAEGGAEA-KALP-EAEKKKEQSLPFYQLFSFADKYDWILMVSGSVGAVIHGSSMPVFFL 58

Query: 61   LFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLR 120
            LFGEMVNGFGKNQTD+ KMT EV KYALYFVYLG++VC SSYAEIACWMYTGERQVSTLR
Sbjct: 59   LFGEMVNGFGKNQTDLSKMTEEVAKYALYFVYLGVVVCISSYAEIACWMYTGERQVSTLR 118

Query: 121  KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 180
            KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG
Sbjct: 119  KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 178

Query: 181  FVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY 240
            FVSAWRLALLS+AVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY
Sbjct: 179  FVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY 238

Query: 241  VGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTD 300
            VGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TD
Sbjct: 239  VGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTD 298

Query: 301  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDE 360
            GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEII+QKPSI+QDP++G+CL E
Sbjct: 299  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIRQKPSIVQDPSDGKCLAE 358

Query: 361  VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
            VNGNIEFK+VTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN
Sbjct: 359  VNGNIEFKDVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 418

Query: 421  AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAA 480
             G VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP+AT AEVEAAASAA
Sbjct: 419  QGQVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPDATAAEVEAAASAA 478

Query: 481  NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
            NAHSFITLLPNGY+TQVGERG QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES
Sbjct: 479  NAHSFITLLPNGYNTQVGERGTQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 538

Query: 541  IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 600
            IVQEALDRLMVGRTTVVVAHRLSTIRNVDT+AVIQQGQVVETGTHEEL AKAGAYASLIR
Sbjct: 539  IVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGTHEELSAKAGAYASLIR 598

Query: 601  FQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNA 660
            FQEMVRNRDFANPSTRRSRS+RLSHSLSTKSLSLRSGSLRNLSY YSTGADGRIEMVSNA
Sbjct: 599  FQEMVRNRDFANPSTRRSRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMVSNA 658

Query: 661  ETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNP 720
            ETD+KNPAPDGYF RLL LNAPEWPYSIMGA+GSVLSGFIGPTFAIVM+ MIEVFYYRNP
Sbjct: 659  ETDKKNPAPDGYFYRLLNLNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYRNP 718

Query: 721  ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 780
            ASMERKTKE+VFIYIGAGLYAV+AYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD
Sbjct: 719  ASMERKTKEYVFIYIGAGLYAVIAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 778

Query: 781  EEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 840
            EEE+NSSL+AARLATDAADVKSAIA+RISVILQNMTSLLTSFIVAFIVEWRVSLLIL T+
Sbjct: 779  EEENNSSLLAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATF 838

Query: 841  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELR 900
            PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ KILSLFC+ELR
Sbjct: 839  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQEKILSLFCYELR 898

Query: 901  VPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTA 960
            VPQ Q+LRRS T+G+LFG+SQ AL+ASEALILWYG HLV KG STFSKVIKVFVVLV+TA
Sbjct: 899  VPQMQSLRRSQTSGLLFGLSQLALYASEALILWYGSHLVSKGASTFSKVIKVFVVLVITA 958

Query: 961  NSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYP 1020
            NSVAETVSLAPEIIRGGE+VGSVFS LDRST+IDPDD DAEPVE+IRGEIELRHVDF+YP
Sbjct: 959  NSVAETVSLAPEIIRGGEAVGSVFSILDRSTKIDPDDSDAEPVESIRGEIELRHVDFSYP 1018

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
            SR D+ VFKD NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD+RRLN
Sbjct: 1019 SRSDITVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDVRRLN 1078

Query: 1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT 1140
            LKSLRLKIGLVQQEPALFAASI DNIAYGK+GATEAEV+EAARAANVHGFVS LP+ YKT
Sbjct: 1079 LKSLRLKIGLVQQEPALFAASILDNIAYGKDGATEAEVIEAARAANVHGFVSGLPDGYKT 1138

Query: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 1200
            PVGERGVQLSGGQKQRIAIARAVLK+P ILLLDEATSALDAESECVLQEALERLMRGRTT
Sbjct: 1139 PVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTT 1198

Query: 1201 VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI 1252
            VLVAHRLSTIRGVD IGVVQDGRIVEQGSHSEL+SRP+GAYSRLLQLQHHHI
Sbjct: 1199 VLVAHRLSTIRGVDSIGVVQDGRIVEQGSHSELISRPEGAYSRLLQLQHHHI 1250

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818508|ref|XP_002877137.1| P-glycoprotein 19 [Arabidopsis lyrata subsp. lyrata] gi|297322975|gb|EFH53396.1| P-glycoprotein 19 [Arabidopsis lyrata subsp. lyrata]

 Score = 2296 bits (5951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1122/1252 (89%), Positives = 1198/1252 (95%)

Query: 1    MAEPTTEAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFL 60
            M+EP T  AKT+P EAEKKKEQSLPFF+LFSFADK+D+ LM  GSLGA++HGSSMPVFFL
Sbjct: 1    MSEPNTTDAKTVPTEAEKKKEQSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFL 60

Query: 61   LFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLR 120
            LFG+MVNGFGKNQ D+H+M HEV KY+LYFVYLGL+VCFSSYAEIACWMY+GERQV+ LR
Sbjct: 61   LFGQMVNGFGKNQMDLHQMVHEVSKYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALR 120

Query: 121  KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 180
            KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG
Sbjct: 121  KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 180

Query: 181  FVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY 240
            FVSAW+LALLS+AVIPGIAFAGGLYAYTLTG+TSKSRESYANAG+IAEQAIAQVRTVYSY
Sbjct: 181  FVSAWKLALLSVAVIPGIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSY 240

Query: 241  VGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTD 300
            VGESKAL+SYSDAIQ TLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TD
Sbjct: 241  VGESKALSSYSDAIQYTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTD 300

Query: 301  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDE 360
            GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEII QKP+IIQDP +G+CLD+
Sbjct: 301  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQKPTIIQDPLDGKCLDQ 360

Query: 361  VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
            V+GNIEFK+VTFSYPSRPDV+IFR+F+IFFP+GKTVAVVGGSGSGKSTVVSLIERFYDPN
Sbjct: 361  VHGNIEFKDVTFSYPSRPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPN 420

Query: 421  AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAA 480
            +G +LLD V+IKTLQL++LR+QIGLVNQEPALFATTILENILYGKP+ATM EVEAAASAA
Sbjct: 421  SGQILLDGVEIKTLQLKFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAA 480

Query: 481  NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
            NAHSFITLLP GY TQVGERGVQLSGGQKQRIAIARAMLK+PKILLLDEATSALDA SES
Sbjct: 481  NAHSFITLLPKGYDTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSES 540

Query: 541  IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 600
            IVQEALDR+MVGRTTVVVAHRL TIRNVD++AVIQQGQVVETGTHEELIAK+GAYASLIR
Sbjct: 541  IVQEALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYASLIR 600

Query: 601  FQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNA 660
            FQEMV  RDF+NPSTRR+RSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEM+SNA
Sbjct: 601  FQEMVGTRDFSNPSTRRTRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNA 660

Query: 661  ETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNP 720
            ETDRK  AP+ YF RLLKLN+PEWPYSIMGAIGS+LSGFIGPTFAIVM+ MIEVFYY + 
Sbjct: 661  ETDRKTRAPENYFYRLLKLNSPEWPYSIMGAIGSILSGFIGPTFAIVMSNMIEVFYYTDY 720

Query: 721  ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 780
             SMERKTKE+VFIYIGAGLYAV AYLIQHYFFSIMGENLTTRVRRMML+AILRNEVGWFD
Sbjct: 721  NSMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFD 780

Query: 781  EEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 840
            E+EHNSSL+AARLATDAADVKSAIA+RISVILQNMTSLLTSFIVAFIVEWRVSLLILGT+
Sbjct: 781  EDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTF 840

Query: 841  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELR 900
            PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ+KILSLFCHELR
Sbjct: 841  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELR 900

Query: 901  VPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTA 960
            VPQ ++L RS T+G LFG+SQ AL+ SEALILWYG HLV KGVSTFSKVIKVFVVLV+TA
Sbjct: 901  VPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITA 960

Query: 961  NSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYP 1020
            NSVAETVSLAPEIIRGGE+VGSVFS LDR TRIDPDD DA+PVETIRG+IE RHVDFAYP
Sbjct: 961  NSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRHVDFAYP 1020

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
            SRPDV+VF+DFNLRIRAG SQALVGASGSGKSSVIA+IERFYDP AGKVMIDGKDIRRLN
Sbjct: 1021 SRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLN 1080

Query: 1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT 1140
            LKSLRLKIGLVQQEPALFAA+IFDNIAYGK+GATE+EV+EAARAAN HGF+S LP  YKT
Sbjct: 1081 LKSLRLKIGLVQQEPALFAATIFDNIAYGKDGATESEVIEAARAANAHGFISGLPEGYKT 1140

Query: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 1200
            PVGERGVQLSGGQKQRIAIARAVLKNP +LLLDEATSALDAESECVLQEALERLMRGRTT
Sbjct: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRGRTT 1200

Query: 1201 VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI 1252
            V+VAHRLSTIRGVDCIGV+QDGRIVEQGSHSELVSRPDGAYSRLLQLQ H I
Sbjct: 1201 VVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPDGAYSRLLQLQTHRI 1252

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461923|ref|XP_004148691.1| PREDICTED: ABC transporter B family member 19-like [Cucumis sativus]

 Score = 2290 bits (5933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1147/1252 (91%), Positives = 1200/1252 (95%), Gaps = 2/1252 (0%)

Query: 1    MAEPTTEAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFL 60
            MAEP TE  K LP E EKKKEQSLPF QLFSFADKYDW LMI GS GA+IHGSSMPVFFL
Sbjct: 1    MAEPVTEP-KALP-EPEKKKEQSLPFHQLFSFADKYDWFLMILGSFGAIIHGSSMPVFFL 58

Query: 61   LFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLR 120
            LFGEMVNGFGKNQ++ HKMT EV KYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLR
Sbjct: 59   LFGEMVNGFGKNQSNFHKMTAEVSKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLR 118

Query: 121  KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 180
            KKYLEAVLKQDVGFFDTDARTGD+VFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG
Sbjct: 119  KKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 178

Query: 181  FVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY 240
            F+SAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY
Sbjct: 179  FLSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY 238

Query: 241  VGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTD 300
            VGESKALNSYSD+IQNTLK+GYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TD
Sbjct: 239  VGESKALNSYSDSIQNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTD 298

Query: 301  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDE 360
            GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKP+IIQDP +G+CL E
Sbjct: 299  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIIQDPLDGKCLGE 358

Query: 361  VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
            VNGNIEFK+VTFSYPSRPDV+IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN
Sbjct: 359  VNGNIEFKDVTFSYPSRPDVMIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 418

Query: 421  AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAA 480
             G VLLDNVDIKTLQL+WLRDQIGLVNQEPALFATTI ENILYGKP+AT AEVEAAA+AA
Sbjct: 419  QGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPDATTAEVEAAAAAA 478

Query: 481  NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
            NAHSFITLLPNGY TQVGERG+QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES
Sbjct: 479  NAHSFITLLPNGYDTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 538

Query: 541  IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 600
            IVQEALDRLMVGRTTVVVAHRLSTIRNVD++AVIQQGQVVETGTH+ELI K+GAY+SLIR
Sbjct: 539  IVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHDELITKSGAYSSLIR 598

Query: 601  FQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNA 660
            FQEMVRNR+F+NPSTRR+RS+RLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNA
Sbjct: 599  FQEMVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNA 658

Query: 661  ETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNP 720
            ETDRKNPAPDGYFLRLLKLN PEWPYSIMGA+GSVLSGFI PTFAIVM+ MIEVFYYRN 
Sbjct: 659  ETDRKNPAPDGYFLRLLKLNGPEWPYSIMGAVGSVLSGFISPTFAIVMSNMIEVFYYRNS 718

Query: 721  ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 780
            ++MERK KEFVFIYIG G+YAVVAYLIQHYFF+IMGENLTTRVRRMMLAAILRNEVGWFD
Sbjct: 719  SAMERKIKEFVFIYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFD 778

Query: 781  EEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 840
            EEEHNSSLVAARLATDAADVKSAIA+RISVILQNMTSL TSFIVAFIVEWRVSLLIL  +
Sbjct: 779  EEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIVEWRVSLLILAAF 838

Query: 841  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELR 900
            PLLVLAN AQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ+KILSLFCHELR
Sbjct: 839  PLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFCHELR 898

Query: 901  VPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTA 960
            +PQ Q+LRRS TAGILFGISQ AL+ASEAL+LWYGVHLV  G STFSKVIKVFVVLVVTA
Sbjct: 899  IPQRQSLRRSQTAGILFGISQLALYASEALVLWYGVHLVSNGGSTFSKVIKVFVVLVVTA 958

Query: 961  NSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYP 1020
            NSVAETVSLAPEI+RGGES+GSVFS LDR TRIDPDDP+AE VET+RGEIELRHVDFAYP
Sbjct: 959  NSVAETVSLAPEIVRGGESIGSVFSILDRPTRIDPDDPEAETVETLRGEIELRHVDFAYP 1018

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
            SRPDV+VFKD NLRIRAGQSQALVGASGSGKSSVIALIERFYDP  GKVMIDGKDIRRLN
Sbjct: 1019 SRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPLTGKVMIDGKDIRRLN 1078

Query: 1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT 1140
            L+SLRLKIGLVQQEPALFAASIFDNIAYGK+GATE+EV+EAARAANVHGFVS LP+ Y T
Sbjct: 1079 LQSLRLKIGLVQQEPALFAASIFDNIAYGKDGATESEVIEAARAANVHGFVSGLPDGYNT 1138

Query: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 1200
            PVGERGVQLSGGQKQRIAIARAVLK+P ILLLDEATSALDAESECVLQEALERLMRGRTT
Sbjct: 1139 PVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTT 1198

Query: 1201 VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI 1252
            V+VAHRLSTIR VD IGVVQDGRIVEQGSH+EL+SR +GAYSRLLQLQH HI
Sbjct: 1199 VVVAHRLSTIRSVDSIGVVQDGRIVEQGSHNELLSRAEGAYSRLLQLQHQHI 1250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228506|ref|NP_189528.1| ABC transporter B family member 19 [Arabidopsis thaliana] gi|75335092|sp|Q9LJX0.1|AB19B_ARATH RecName: Full=ABC transporter B family member 19; Short=ABC transporter ABCB.19; Short=AtABCB19; AltName: Full=Multidrug resistance protein 11; AltName: Full=P-glycoprotein 19 gi|9294227|dbj|BAB02129.1| P-glycoprotein; multi-drug resistance related; ABC transporter-like protein [Arabidopsis thaliana] gi|332643977|gb|AEE77498.1| ABC transporter B family member 19 [Arabidopsis thaliana]

 Score = 2289 bits (5931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1116/1252 (89%), Positives = 1197/1252 (95%)

Query: 1    MAEPTTEAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFL 60
            M+E  T  AKT+P EAEKKKEQSLPFF+LFSFADK+D+ LM  GSLGA++HGSSMPVFFL
Sbjct: 1    MSETNTTDAKTVPAEAEKKKEQSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFL 60

Query: 61   LFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLR 120
            LFG+MVNGFGKNQ D+H+M HEV +Y+LYFVYLGL+VCFSSYAEIACWMY+GERQV+ LR
Sbjct: 61   LFGQMVNGFGKNQMDLHQMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALR 120

Query: 121  KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 180
            KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG
Sbjct: 121  KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 180

Query: 181  FVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY 240
            FVSAW+LALLS+AVIPGIAFAGGLYAYTLTG+TSKSRESYANAG+IAEQAIAQVRTVYSY
Sbjct: 181  FVSAWKLALLSVAVIPGIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSY 240

Query: 241  VGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTD 300
            VGESKALN+YSDAIQ TLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TD
Sbjct: 241  VGESKALNAYSDAIQYTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTD 300

Query: 301  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDE 360
            GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEII Q+P+IIQDP +G+CLD+
Sbjct: 301  GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQ 360

Query: 361  VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
            V+GNIEFK+VTFSYPSRPDV+IFR+F+IFFP+GKTVAVVGGSGSGKSTVVSLIERFYDPN
Sbjct: 361  VHGNIEFKDVTFSYPSRPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPN 420

Query: 421  AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAA 480
            +G +LLD V+IKTLQL++LR+QIGLVNQEPALFATTILENILYGKP+ATM EVEAAASAA
Sbjct: 421  SGQILLDGVEIKTLQLKFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAA 480

Query: 481  NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
            NAHSFITLLP GY TQVGERGVQLSGGQKQRIAIARAMLK+PKILLLDEATSALDA SES
Sbjct: 481  NAHSFITLLPKGYDTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSES 540

Query: 541  IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 600
            IVQEALDR+MVGRTTVVVAHRL TIRNVD++AVIQQGQVVETGTHEELIAK+GAYASLIR
Sbjct: 541  IVQEALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYASLIR 600

Query: 601  FQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNA 660
            FQEMV  RDF+NPSTRR+RSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEM+SNA
Sbjct: 601  FQEMVGTRDFSNPSTRRTRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNA 660

Query: 661  ETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNP 720
            ETDRK  AP+ YF RLLKLN+PEWPYSIMGA+GS+LSGFIGPTFAIVM+ MIEVFYY + 
Sbjct: 661  ETDRKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDY 720

Query: 721  ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 780
             SMERKTKE+VFIYIGAGLYAV AYLIQHYFFSIMGENLTTRVRRMML+AILRNEVGWFD
Sbjct: 721  DSMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFD 780

Query: 781  EEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 840
            E+EHNSSL+AARLATDAADVKSAIA+RISVILQNMTSLLTSFIVAFIVEWRVSLLILGT+
Sbjct: 781  EDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTF 840

Query: 841  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELR 900
            PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ+KILSLFCHELR
Sbjct: 841  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELR 900

Query: 901  VPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTA 960
            VPQ ++L RS T+G LFG+SQ AL+ SEALILWYG HLV KGVSTFSKVIKVFVVLV+TA
Sbjct: 901  VPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITA 960

Query: 961  NSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYP 1020
            NSVAETVSLAPEIIRGGE+VGSVFS LDR TRIDPDD DA+PVETIRG+IE RHVDFAYP
Sbjct: 961  NSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRHVDFAYP 1020

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
            SRPDV+VF+DFNLRIRAG SQALVGASGSGKSSVIA+IERFYDP AGKVMIDGKDIRRLN
Sbjct: 1021 SRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLN 1080

Query: 1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT 1140
            LKSLRLKIGLVQQEPALFAA+IFDNIAYGK+GATE+EV++AARAAN HGF+S LP  YKT
Sbjct: 1081 LKSLRLKIGLVQQEPALFAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLPEGYKT 1140

Query: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 1200
            PVGERGVQLSGGQKQRIAIARAVLKNP +LLLDEATSALDAESECVLQEALERLMRGRTT
Sbjct: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRGRTT 1200

Query: 1201 VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI 1252
            V+VAHRLSTIRGVDCIGV+QDGRIVEQGSHSELVSRP+GAYSRLLQLQ H I
Sbjct: 1201 VVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPEGAYSRLLQLQTHRI 1252

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1252
TAIR|locus:2090734	1252	ABCB19 "ATP-binding cassette B	1.0	1.0	0.822	0.0
UNIPROTKB|Q0JCP1	1259	Os04g0459000 "Os04g0459000 pro	0.988	0.982	0.789	0.0
TAIR|locus:2057961	1286	ABCB1 "ATP-binding cassette B1	0.988	0.962	0.495	0.0
TAIR|locus:2120805	1273	ABCB2 "ATP-binding cassette B2	0.471	0.463	0.510	0.0
TAIR|locus:2019958	1227	PGP10 "P-glycoprotein 10" [Ara	0.476	0.486	0.502	0.0
UNIPROTKB|Q8GU75	1264	mdr11 "MDR-like ABC transporte	0.978	0.969	0.483	1.80000021762e-317
UNIPROTKB|Q7EZL2	1344	P0705A05.112-2 "Putative P-gly	0.987	0.919	0.487	1.29999999852e-315
TAIR|locus:2010464	1245	ABCB13 "ATP-binding cassette B	0.980	0.985	0.464	1.2e-303
TAIR|locus:2010444	1247	ABCB14 "ATP-binding cassette B	0.976	0.979	0.465	3.6e-302
TAIR|locus:2041434	1286	ABCB4 "ATP-binding cassette B4	0.990	0.964	0.420	3.9e-273

TAIR|locus:2090734 ABCB19 "ATP-binding cassette B19" [Arabidopsis thaliana (taxid:3702)]

 Score = 5238 (1848.9 bits), Expect = 0., P = 0.
 Identities = 1030/1252 (82%), Positives = 1104/1252 (88%)

Query:     1 MAEPTTEAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFL 60
             M+E  T  AKT+P EAEKKKEQSLPFF+LFSFADK+D+ LM  GSLGA++HGSSMPVFFL
Sbjct:     1 MSETNTTDAKTVPAEAEKKKEQSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFL 60

Query:    61 LFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLR 120
             LFG+MVNGFGKNQ D+H+M HEV +Y+LYFVYLGL+VCFSSYAEIACWMY+GERQV+ LR
Sbjct:    61 LFGQMVNGFGKNQMDLHQMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALR 120

Query:   121 KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 180
             KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG
Sbjct:   121 KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG 180

Query:   181 FVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSY 240
             FVSAW+LALLS+AVIPGIAFAGGLYAYTLTG+TSKSRESYANAG+IAEQAIAQVRTVYSY
Sbjct:   181 FVSAWKLALLSVAVIPGIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSY 240

Query:   241 VGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTD 300
             VGESKALN+YSDAIQ TLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNG TD
Sbjct:   241 VGESKALNAYSDAIQYTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTD 300

Query:   301 GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDE 360
             GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEII Q+P+IIQDP +G+CLD+
Sbjct:   301 GGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQ 360

Query:   361 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPN 420
             V+GNIEFK+VTFSYPSRPDV+IFR+F+IFFP                    LIERFYDPN
Sbjct:   361 VHGNIEFKDVTFSYPSRPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPN 420

Query:   421 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXX 480
             +G +LLD V+IKTLQL++LR+QIGLVNQEPALFATTILENILYGKP              
Sbjct:   421 SGQILLDGVEIKTLQLKFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAA 480

Query:   481 XXHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
               HSFITLLP GY TQVGERGVQLSGGQKQRIAIARAMLK+PKILLLDEATSALDA SES
Sbjct:   481 NAHSFITLLPKGYDTQVGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSES 540

Query:   541 IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 600
             IVQEALDR+MVGRTTVVVAHRL TIRNVD++AVIQQGQVVETGTHEELIAK+GAYASLIR
Sbjct:   541 IVQEALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAKSGAYASLIR 600

Query:   601 FQEMVRNRDFANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGADGRIEMVSNA 660
             FQEMV  RDF+NP                                  TGADGRIEM+SNA
Sbjct:   601 FQEMVGTRDFSNPSTRRTRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMISNA 660

Query:   661 ETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNP 720
             ETDRK  AP+ YF RLLKLN+PEWPYSIMGA+GS+LSGFIGPTFAIVM+ MIEVFYY + 
Sbjct:   661 ETDRKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDY 720

Query:   721 ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 780
              SMERKTKE+VFIYIGAGLYAV AYLIQHYFFSIMGENLTTRVRRMML+AILRNEVGWFD
Sbjct:   721 DSMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLSAILRNEVGWFD 780

Query:   781 EEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 840
             E+EHNSSL+AARLATDAADVKSAIA+RISVILQNMTSLLTSFIVAFIVEWRVSLLILGT+
Sbjct:   781 EDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILGTF 840

Query:   841 PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELR 900
             PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ+KILSLFCHELR
Sbjct:   841 PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHELR 900

Query:   901 VPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTA 960
             VPQ ++L RS T+G LFG+SQ AL+ SEALILWYG HLV KGVSTFSK          TA
Sbjct:   901 VPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVITA 960

Query:   961 NSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYP 1020
             NSVAETVSLAPEIIRGGE+VGSVFS LDR TRIDPDD DA+PVETIRG+IE RHVDFAYP
Sbjct:   961 NSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRHVDFAYP 1020

Query:  1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
             SRPDV+VF+DFNLRIRAG SQALVGASGSGKSSVIA+IERFYDP AGKVMIDGKDIRRLN
Sbjct:  1021 SRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLN 1080

Query:  1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKT 1140
             LKSLRLKIGLVQQEPALFAA+IFDNIAYGK+G               HGF+S LP  YKT
Sbjct:  1081 LKSLRLKIGLVQQEPALFAATIFDNIAYGKDGATESEVIDAARAANAHGFISGLPEGYKT 1140

Query:  1141 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 1200
             PVGERGVQLSGGQKQRIAIARAVLKNP +LLLDEATSALDAESECVLQEALERLMRGRTT
Sbjct:  1141 PVGERGVQLSGGQKQRIAIARAVLKNPTVLLLDEATSALDAESECVLQEALERLMRGRTT 1200

Query:  1201 VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI 1252
             V+VAHRLSTIRGVDCIGV+QDGRIVEQGSHSELVSRP+GAYSRLLQLQ H I
Sbjct:  1201 VVVAHRLSTIRGVDCIGVIQDGRIVEQGSHSELVSRPEGAYSRLLQLQTHRI 1252

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0009926 "auxin polar transport" evidence=RCA;IMP

GO:0010540 "basipetal auxin transport" evidence=IMP

GO:0008361 "regulation of cell size" evidence=RCA;IMP

GO:0009637 "response to blue light" evidence=RCA;IMP

GO:0009639 "response to red or far red light" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=RCA;IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0010218 "response to far red light" evidence=RCA;IMP

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA;IMP

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010541 "acropetal auxin transport" evidence=IMP

GO:0048364 "root development" evidence=RCA;IMP

GO:0048527 "lateral root development" evidence=IMP

GO:0048443 "stamen development" evidence=IGI;RCA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 4999 (1764.8 bits), Expect = 0., P = 0.
 Identities = 979/1240 (78%), Positives = 1072/1240 (86%)

Query:    15 EAEKKK-EQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQ 73
             EA KK+ +QS+ F +LF FAD  DW LM  GS GAV+HG++MPVFFLLFGE++NGFGKNQ
Sbjct:    19 EAVKKRVDQSVAFHELFGFADPLDWLLMAAGSAGAVVHGAAMPVFFLLFGELINGFGKNQ 78

Query:    74 TDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVG 133
               + +MT EV KY+LYFVYLGL+VC SSY EIACWMYTGERQV  LR++YLEAVL+QDVG
Sbjct:    79 HSLRRMTDEVSKYSLYFVYLGLVVCASSYLEIACWMYTGERQVGALRRRYLEAVLRQDVG 138

Query:   134 FFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIA 193
             FFDTDARTGD+VFSVSTDTLLVQDAI EKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIA
Sbjct:   139 FFDTDARTGDVVFSVSTDTLLVQDAIGEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIA 198

Query:   194 VIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDA 253
             VIPGIAFAGGLYAYTLTGLTSKSR+SYANAGIIAEQAIAQVRTVYSYVGESKALNSYS+A
Sbjct:   199 VIPGIAFAGGLYAYTLTGLTSKSRDSYANAGIIAEQAIAQVRTVYSYVGESKALNSYSEA 258

Query:   254 IQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIV 313
             IQNTLKLGYKAGMAKGLG+GCTYGIACMSWALVFWYAGVFIRNG TDGGKAFTAIFSAIV
Sbjct:   259 IQNTLKLGYKAGMAKGLGIGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIV 318

Query:   314 GGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFS 373
             GG+SLGQSFSNLGAFSKGK AGYKL+E+I+Q+P+I+QDP +GRCLDEV+GNIEFK V FS
Sbjct:   319 GGLSLGQSFSNLGAFSKGKIAGYKLLEVIRQRPTIVQDPADGRCLDEVHGNIEFKEVAFS 378

Query:   374 YPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKT 433
             YPSRPDV+IFRDFS+FFP                    LIERFYDPN G VLLDNVDIKT
Sbjct:   379 YPSRPDVMIFRDFSLFFPAGKTAAVVGGSGSGKSTVVALIERFYDPNQGQVLLDNVDIKT 438

Query:   434 LQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGY 493
             LQL+WLRDQIGLVNQEPALFATTILENILYGKP                HSFI LLPNGY
Sbjct:   439 LQLKWLRDQIGLVNQEPALFATTILENILYGKPDATMAEVEAAATSANAHSFIALLPNGY 498

Query:   494 STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR 553
             +TQVGERG+QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE+IVQEALDRLMVGR
Sbjct:   499 NTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGR 558

Query:   554 TTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK--AGAYASLIRFQEMVRNRDFA 611
             TTVVVAHRLSTIR VD +AVIQQGQVVETGTH+EL+AK  +GAYA+LIRFQEM RNRDF 
Sbjct:   559 TTVVVAHRLSTIRCVDMIAVIQQGQVVETGTHDELLAKGSSGAYAALIRFQEMARNRDFR 618

Query:   612 NPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGADGRIEMVSNAETDRKNPAPDG 671
              P                                  TGADGRIEMVSNA+ DRK PAP G
Sbjct:   619 GPSTRKSRSSRLSNSLSTRSLSLRSGSLRNLSYSYSTGADGRIEMVSNADNDRKYPAPKG 678

Query:   672 YFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFV 731
             YF +LLKLNAPEWPY+I+GAIGS+LSGFIGPTFAIVM+ MIEVFY+R+P +MERKT+E+V
Sbjct:   679 YFFKLLKLNAPEWPYTILGAIGSILSGFIGPTFAIVMSNMIEVFYFRDPNAMERKTREYV 738

Query:   732 FIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAA 791
             FIYIG GLYAVVAYL+QHYFFSIMGENLTTRVRRMMLAAILRN+VGWFD+EE+NSSLVAA
Sbjct:   739 FIYIGTGLYAVVAYLVQHYFFSIMGENLTTRVRRMMLAAILRNDVGWFDQEENNSSLVAA 798

Query:   792 RLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQ 851
             RL+TDAADVKSAIA+RISVILQNMTSLL SF+V FI+EWRV++LIL T+PLLVLANFAQQ
Sbjct:   799 RLSTDAADVKSAIAERISVILQNMTSLLVSFVVGFIIEWRVAVLILVTFPLLVLANFAQQ 858

Query:   852 LSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 911
             LS+KGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ+K+LSLFC ELRVPQ  +LRRS 
Sbjct:   859 LSMKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKVLSLFCTELRVPQMHSLRRSQ 918

Query:   912 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAP 971
              +G LFG+SQ +L+ASEALILWYG HLV   VSTFSK          TAN+VAETVSLAP
Sbjct:   919 ISGALFGLSQLSLYASEALILWYGAHLVRHHVSTFSKVIKVFVVLVITANTVAETVSLAP 978

Query:   972 EIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDF 1031
             EI+RGGES+ SVF+ L+  TRIDPD+P+ EPVE++RG+I+ RHVDFAYPSRPDV+VFKDF
Sbjct:   979 EIVRGGESIRSVFAILNYRTRIDPDEPETEPVESVRGDIDFRHVDFAYPSRPDVMVFKDF 1038

Query:  1032 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 1091
             +LRIRAGQSQALVGASGSGKS+VIALIERFYDP AGKVMIDGKDIRRLN++SLRLKIGLV
Sbjct:  1039 SLRIRAGQSQALVGASGSGKSTVIALIERFYDPLAGKVMIDGKDIRRLNVRSLRLKIGLV 1098

Query:  1092 QQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSG 1151
             QQEP LFA SIF+NIAYGK+G               HGFVSALP  YKTPVGERGVQLSG
Sbjct:  1099 QQEPVLFATSIFENIAYGKDGATEEEVIEAAKVANMHGFVSALPEGYKTPVGERGVQLSG 1158

Query:  1152 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR 1211
             GQKQRIAIARAVLK+PA+LLLDEATSALDAESECVLQEALER+M+GRT VLVAHRLSTIR
Sbjct:  1159 GQKQRIAIARAVLKDPAVLLLDEATSALDAESECVLQEALERIMKGRTAVLVAHRLSTIR 1218

Query:  1212 GVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHH 1251
             GVD I VVQDGR+VEQGSH ELVSRPDGAYSRLLQLQ HH
Sbjct:  1219 GVDSIAVVQDGRVVEQGSHGELVSRPDGAYSRLLQLQLHH 1258

GO:0005886 "plasma membrane" evidence=IBA

GO:0010315 "auxin efflux" evidence=IBA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IBA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

TAIR|locus:2057961 ABCB1 "ATP-binding cassette B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 3166 (1119.5 bits), Expect = 0., P = 0.
 Identities = 620/1251 (49%), Positives = 853/1251 (68%)

Query:    11 TLPPEAEKKKE-QSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGF 69
             TL  E  KK E + + F +LF FAD  D+ LM  GS+GA +HG S+P+F   F ++VN F
Sbjct:    13 TLVVEEPKKAEIRGVAFKELFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSF 72

Query:    70 GKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLK 129
             G N  ++ KM  EV KYALYF+ +G  +  SS+AEI+CWM++GERQ + +R KYLEA L 
Sbjct:    73 GSNSNNVEKMMEEVLKYALYFLVVGAAIWASSWAEISCWMWSGERQTTKMRIKYLEAALN 132

Query:   130 QDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLAL 189
             QD+ FFDT+ RT D+VF+++TD ++VQDAISEK+GNFIHY++TF++G +VGF + W+LAL
Sbjct:   133 QDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLAL 192

Query:   190 LSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNS 249
             +++AV+P IA  GG++  TL+ L++KS+ES + AG I EQ + Q+R V ++VGES+A  +
Sbjct:   193 VTLAVVPLIAVIGGIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGESRASQA 252

Query:   250 YSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIF 309
             YS A++   KLGYK G+AKG+GLG TY +    +AL+ WY G  +R+ +T+GG A   +F
Sbjct:   253 YSSALKIAQKLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHLTNGGLAIATMF 312

Query:   310 SAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKN 369
             + ++GG++LGQS  ++ AF+K K A  K+  II  KP+I ++  +G  LD V G +E KN
Sbjct:   313 AVMIGGLALGQSAPSMAAFAKAKVAAAKIFRIIDHKPTIERNSESGVELDSVTGLVELKN 372

Query:   370 VTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNV 429
             V FSYPSRPDV I  +F +  P                    LIERFYDPN+G VLLD  
Sbjct:   373 VDFSYPSRPDVKILNNFCLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPNSGQVLLDGQ 432

Query:   430 DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLL 489
             D+KTL+LRWLR QIGLV+QEPALFAT+I ENIL G+P                HSFI  L
Sbjct:   433 DLKTLKLRWLRQQIGLVSQEPALFATSIKENILLGRPDADQVEIEEAARVANAHSFIIKL 492

Query:   490 PNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL 549
             P+G+ TQVGERG+QLSGGQKQRIAIARAMLKNP ILLLDEATSALD+ SE +VQEALDR 
Sbjct:   493 PDGFDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRF 552

Query:   550 MVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA--GAYASLIRFQEMVRN 607
             M+GRTT+++AHRLSTIR  D VAV+QQG V E GTH+EL +K   G YA LI+ QE    
Sbjct:   553 MIGRTTLIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEAAHE 612

Query:   608 RDFANPXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXTGADGRIEMVSNAETDR 664
                +N                                      + +D  + + +++  + 
Sbjct:   613 TAMSNARKSSARPSSARNSVSSPIMTRNSSYGRSPYSRRLSDFSTSDFSLSIDASSYPNY 672

Query:   665 KNPA---PD--GYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRN 719
             +N      D    F RL K+N+PEW Y+++G++GSV+ G +   FA V++ ++ V+Y  +
Sbjct:   673 RNEKLAFKDQANSFWRLAKMNSPEWKYALLGSVGSVICGSLSAFFAYVLSAVLSVYYNPD 732

Query:   720 PASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWF 779
                M ++  ++ ++ IG    A+V   +QH F+ I+GENLT RVR  ML+A+L+NE+ WF
Sbjct:   733 HEYMIKQIDKYCYLLIGLSSAALVFNTLQHSFWDIVGENLTKRVREKMLSAVLKNEMAWF 792

Query:   780 DEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGT 839
             D+EE+ S+ +AARLA DA +V+SAI DRISVI+QN   +L +    F+++WR++L+++  
Sbjct:   793 DQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAV 852

Query:   840 YPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHEL 899
             +P++V A   Q++ + GF+GD   AHAK + +AGE ++N+RTVAAFN++ KI+ L+   L
Sbjct:   853 FPVVVAATVLQKMFMTGFSGDLEAAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANL 912

Query:   900 RVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXT 959
               P  +   +   AG  +G++QF L+AS AL LWY   LV  G+S FSK          +
Sbjct:   913 EPPLKRCFWKGQIAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVS 972

Query:   960 ANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPV-ETIRGEIELRHVDFA 1018
             AN  AET++LAP+ I+GG+++ SVF  LDR T I+PDDPD  PV + +RGE+EL+H+DF+
Sbjct:   973 ANGAAETLTLAPDFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVELKHIDFS 1032

Query:  1019 YPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR 1078
             YPSRPD+ +F+D +LR RAG++ ALVG SG GKSSVI+LI+RFY+P++G+VMIDGKDIR+
Sbjct:  1033 YPSRPDIQIFRDLSLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIRK 1092

Query:  1079 LNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAY 1138
              NLK++R  I +V QEP LF  +I++NIAYG E                H F+SALP  Y
Sbjct:  1093 YNLKAIRKHIAIVPQEPCLFGTTIYENIAYGHECATEAEIIQAATLASAHKFISALPEGY 1152

Query:  1139 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR 1198
             KT VGERGVQLSGGQKQRIAIARA+++   I+LLDEATSALDAESE  +QEAL++   GR
Sbjct:  1153 KTYVGERGVQLSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEALDQACSGR 1212

Query:  1199 TTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELV-SRPDGAYSRLLQLQ 1248
             T+++VAHRLSTIR    I V+ DG++ EQGSHS L+ + PDG Y+R++QLQ
Sbjct:  1213 TSIVVAHRLSTIRNAHVIAVIDDGKVAEQGSHSHLLKNHPDGIYARMIQLQ 1263

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006810 "transport" evidence=IEA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008361 "regulation of cell size" evidence=RCA;IMP

GO:0009637 "response to blue light" evidence=RCA;IMP

GO:0009639 "response to red or far red light" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=RCA;IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0009958 "positive gravitropism" evidence=IGI

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA;IMP

GO:0009926 "auxin polar transport" evidence=RCA;IMP;TAS

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IDA

GO:0009624 "response to nematode" evidence=IEP

GO:0048443 "stamen development" evidence=IGI;RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2120805 ABCB2 "ATP-binding cassette B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1602 (569.0 bits), Expect = 0., Sum P(2) = 0.
 Identities = 303/594 (51%), Positives = 416/594 (70%)

Query:    14 PEAEKKKEQSLP---FFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFG 70
             P  EK+KE + P     +LFSFAD YD  LM  GS+GA IHG+S+P+FF+ FG+++N  G
Sbjct:    47 PAPEKEKEMTQPKVSLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIG 106

Query:    71 KNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQ 130
                    + +H V KY+L FVYL + + FSS+ E+ACWM+TGERQ + +R+ YL ++L Q
Sbjct:   107 LAYLFPKQASHRVAKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSMLSQ 166

Query:   131 DVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALL 190
             D+  FDT+A TG+++ ++++D L+VQDA+SEKVGNF+HY+S F+AG  +GF S W+++L+
Sbjct:   167 DISLFDTEASTGEVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLV 226

Query:   191 SIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSY 250
             +++++P IA AGG+YA+   GL ++ R+SY  AG IAE+ I  VRTV ++ GE +A+  Y
Sbjct:   227 TLSIVPLIALAGGIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAVRLY 286

Query:   251 SDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFS 310
              +A++NT K G KAG+ KGLGLG  + +  +SWAL+ W+  V +   + DGGK+FT + +
Sbjct:   287 REALENTYKYGRKAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTMLN 346

Query:   311 AIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNV 370
              ++ G+SLGQ+  ++ AF + KAA Y + ++I++         +GR L +V+G+I+FK+ 
Sbjct:   347 VVIAGLSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQFKDA 406

Query:   371 TFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVD 430
             TFSYPSRPDV+IF   ++  P                    LIERFY+P +G VLLD  +
Sbjct:   407 TFSYPSRPDVVIFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGNN 466

Query:   431 IKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLP 490
             I  L ++WLR QIGLVNQEPALFATTI ENILYGK                  SFI  LP
Sbjct:   467 ISELDIKWLRGQIGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNLP 526

Query:   491 NGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 550
              G+ TQVGERG+QLSGGQKQRIAI+RA++KNP ILLLDEATSALDA SE  VQEALDR+M
Sbjct:   527 EGFETQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVM 586

Query:   551 VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQE 603
             VGRTTVVVAHRLST+RN D +AV+ +G++VE G HE LI+   GAY+SL+R QE
Sbjct:   587 VGRTTVVVAHRLSTVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQE 640

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IBA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0010315 "auxin efflux" evidence=IBA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IBA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0016020 "membrane" evidence=IDA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:2019958 PGP10 "P-glycoprotein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 1596 (566.9 bits), Expect = 0., Sum P(2) = 0.
 Identities = 303/603 (50%), Positives = 422/603 (69%)

Query:     3 EPTTEAAKTLPPEAEK-KKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLL 61
             +P+ + A      AEK KK  S+ F +LFSFAD YD  LM  GS+GA IHG+S+PVFF+ 
Sbjct:     2 QPSNDPAIVDMAAAEKEKKRPSVSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIF 61

Query:    62 FGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRK 121
             FG+++N  G       + +H+V KY+L FVYL +++ FSS+ E+ACWM+TGERQ + +RK
Sbjct:    62 FGKLINIIGLAYLFPQEASHKVAKYSLDFVYLSVVILFSSWLEVACWMHTGERQAAKIRK 121

Query:   122 KYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGF 181
              YL ++L QD+  FDT+  TG+++ +++++ L+VQDAISEKVGNF+H++S F+AG  +GF
Sbjct:   122 AYLRSMLSQDISLFDTEISTGEVISAITSEILVVQDAISEKVGNFMHFISRFIAGFAIGF 181

Query:   182 VSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYV 241
              S W+++L++++++P IA AGG+YA+  +GL  + R+SY  A  IAE+ I  VRTV ++ 
Sbjct:   182 ASVWQISLVTLSIVPFIALAGGIYAFVSSGLIVRVRKSYVKANEIAEEVIGNVRTVQAFT 241

Query:   242 GESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDG 301
             GE KA++SY  A++NT   G KAG+AKGLGLG  + +  +SWAL+ W+  + +  G+ +G
Sbjct:   242 GEEKAVSSYQGALRNTYNYGRKAGLAKGLGLGSLHFVLFLSWALLIWFTSIVVHKGIANG 301

Query:   302 GKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEV 361
             G++FT + + ++ G+SLGQ+  ++  F +  AA Y + ++I++     +D T GR L  V
Sbjct:   302 GESFTTMLNVVIAGLSLGQAAPDISTFMRASAAAYPIFQMIERNT---EDKT-GRKLGNV 357

Query:   362 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNA 421
             NG+I FK+VTF+YPSRPDV+IF   +   P                    LIERFY+P  
Sbjct:   358 NGDILFKDVTFTYPSRPDVVIFDKLNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPTD 417

Query:   422 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXX 481
             G V+LD  DI+ L L+WLR  IGLVNQEP LFATTI ENI+YGK                
Sbjct:   418 GAVMLDGNDIRYLDLKWLRGHIGLVNQEPVLFATTIRENIMYGKDDATSEEITNAAKLSE 477

Query:   482 XHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 541
               SFI  LP G+ TQVGERG+QLSGGQKQRI+I+RA++KNP ILLLDEATSALDA SE I
Sbjct:   478 AISFINNLPEGFETQVGERGIQLSGGQKQRISISRAIVKNPSILLLDEATSALDAESEKI 537

Query:   542 VQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIR 600
             VQEALDR+MVGRTTVVVAHRLST+RN D +AV+  G+++E+G+H+ELI+   GAY+SL+R
Sbjct:   538 VQEALDRVMVGRTTVVVAHRLSTVRNADIIAVVGGGKIIESGSHDELISNPDGAYSSLLR 597

Query:   601 FQE 603
              QE
Sbjct:   598 IQE 600

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IBA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006810 "transport" evidence=IEA

GO:0010315 "auxin efflux" evidence=IBA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IBA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

UNIPROTKB|Q8GU75 mdr11 "MDR-like ABC transporter" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 3044 (1076.6 bits), Expect = 1.8e-317, P = 1.8e-317
 Identities = 597/1235 (48%), Positives = 833/1235 (67%)

Query:    15 EAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQT 74
             EA  K E+ +PF +LFSFAD++D+ LM  GSLGA  HG+S+PVFF+ FG+++N  G    
Sbjct:    27 EAAAKVEK-VPFLKLFSFADRWDYVLMAVGSLGACAHGASVPVFFIFFGKLINIIGLAYL 85

Query:    75 DIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGF 134
                 ++  V KY+L FVYLG+++ FSS+ E+ACWM+TGERQ + +R+ YL ++L QD+  
Sbjct:    86 FPTTVSGRVAKYSLDFVYLGIVILFSSWTEVACWMHTGERQAAKMRQAYLRSMLDQDIAV 145

Query:   135 FDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAV 194
             FDT+A TG+++ ++++D L+VQDAISEKVGNF+HY+S FLAG  +GF   W+++L+++A+
Sbjct:   146 FDTEASTGEVINAITSDILVVQDAISEKVGNFMHYISRFLAGFAIGFSQVWQISLVTLAI 205

Query:   195 IPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAI 254
             +P IA AGG+YAY   GL ++ R+SY  AG IAE+ I  VRTV ++VGE KA+ +Y +A+
Sbjct:   206 VPLIAIAGGIYAYVTIGLMARVRKSYVKAGEIAEEVIGNVRTVQAFVGEEKAVRTYREAL 265

Query:   255 QNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVG 314
               T K G + G+AKGLGLG  + +  +SWAL+ W+  V +   +++GG++FT + + ++ 
Sbjct:   266 LRTYKYGKRGGLAKGLGLGSMHSVLFLSWALLIWFTSVVVHKNISNGGESFTTMLNVVIA 325

Query:   315 GMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSY 374
             G+SLGQ+  N+  F + + A Y + ++I++          GR L  V+G+I+F++V F+Y
Sbjct:   326 GLSLGQAAPNISTFLRARTAAYPIFQMIERNTVNKASSKAGRTLPSVDGHIQFRDVRFAY 385

Query:   375 PSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTL 434
             PSRPDV+I   FS+ FP                    LIERFY+P  G VLLD  DIK L
Sbjct:   386 PSRPDVVILDRFSLDFPAGKIVALVGGSGSGKSTVVSLIERFYEPLTGAVLLDGHDIKDL 445

Query:   435 QLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGYS 494
              ++WLR QIGLVNQEPALFAT+I ENILYGK                  +FI  LP+ Y 
Sbjct:   446 DVKWLRQQIGLVNQEPALFATSIRENILYGKGDASMDEINHAAKLSEAITFINHLPDRYE 505

Query:   495 TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRT 554
             TQVGERG+QLSGGQKQRIAI+RA+LKNP ILLLDEATSALDA SE  VQEALDR+MVGRT
Sbjct:   506 TQVGERGIQLSGGQKQRIAISRAILKNPSILLLDEATSALDAESEKSVQEALDRVMVGRT 565

Query:   555 TVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQEMVRNRDFANP 613
             TVV+AHRLSTIRN DT+AV+  G++VETGTHE+L+A    AYASLI+ QE  + ++    
Sbjct:   566 TVVIAHRLSTIRNADTIAVVDSGRIVETGTHEQLMANPRSAYASLIQLQEAAQLQN-KQS 624

Query:   614 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGADGRIEMVSNAETDRKNPAPDGYF 673
                                                   G +E  ++ E   K+       
Sbjct:   625 FSDSASLSRPLSSKYSRELSRTSMGGSFRSEKDSVSRYGTVE--AHDEGGHKSKPVS--M 680

Query:   674 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFI 733
              +L  +  P+W + + G + + ++G   P FA+ +   + V YY    + +R+ ++   +
Sbjct:   681 KKLYSMIRPDWFFGVSGTVSAFVAGSQMPLFALGVTQAL-VSYYMGWETTKREVRKIAVL 739

Query:   734 YIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARL 793
             +    +  VV + I+H  F IMGE LT RVR  M AAILRNE+GWFD+  H SS++++RL
Sbjct:   740 FCCGAVLTVVFHAIEHLSFGIMGERLTLRVRERMFAAILRNEIGWFDDTSHTSSMLSSRL 799

Query:   794 ATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLS 853
              TDA  V++ + DR +++LQN+  ++TS I+AFI+ WR++L++L TYPL+V  + ++++ 
Sbjct:   800 ETDATLVRTIVVDRSTILLQNIGMIVTSLIIAFIINWRITLVVLATYPLMVSGHISEKMF 859

Query:   854 LKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA 913
             +KG+ G+  K++ K +M+A E VSNIRTVAAF A+ K++ L+  EL+ P  Q+ RR   A
Sbjct:   860 MKGYGGNLGKSYLKANMLAAEAVSNIRTVAAFCAEEKVIKLYADELKEPAKQSFRRGQGA 919

Query:   914 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPEI 973
             G+ +G+SQF L +S AL LWYG  L+ K +++F            TA ++ ET+++AP+I
Sbjct:   920 GLFYGVSQFFLFSSYALALWYGSELMSKEMASFKSVMKSFMVLIVTALAMGETLAMAPDI 979

Query:   974 IRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNL 1033
             I+G + V SVF  LDR T +  D      V+ + G IELR V+F YP+RP+VVVFK  +L
Sbjct:   980 IKGNQMVSSVFEILDRKTDVLIDA--GNDVKRVEGVIELRGVEFRYPARPEVVVFKGLDL 1037

Query:  1034 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQ 1093
              ++AG+S ALVG SGSGKS+V++LI RFYDP AGKV+IDGKDIR++ LKSLR  IGLVQQ
Sbjct:  1038 LMKAGKSMALVGMSGSGKSTVLSLILRFYDPIAGKVLIDGKDIRKVKLKSLRKHIGLVQQ 1097

Query:  1094 EPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQ 1153
             EPALFA +I+DNI YGK+G               H F+SALP  Y+T VGERGVQLSGGQ
Sbjct:  1098 EPALFATTIYDNILYGKDGATEAEVVDAAKLANAHSFISALPEGYRTRVGERGVQLSGGQ 1157

Query:  1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGV 1213
             +QRIAIARA++K+PAILLLDEATSALD ESE V+Q+AL+R+MR RTTV+VAHRLSTI+  
Sbjct:  1158 RQRIAIARAIVKDPAILLLDEATSALDVESERVVQQALDRVMRNRTTVMVAHRLSTIKNA 1217

Query:  1214 DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
             D I V+QDG+I+EQG+H +L+   +GAY +L+ LQ
Sbjct:  1218 DVISVLQDGKIIEQGAHHQLIENRNGAYHKLVSLQ 1252

GO:0005886 "plasma membrane" evidence=IBA

GO:0010315 "auxin efflux" evidence=IBA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IBA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

UNIPROTKB|Q7EZL2 P0705A05.112-2 "Putative P-glycoprotein 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 3027 (1070.6 bits), Expect = 1.3e-315, P = 1.3e-315
 Identities = 611/1253 (48%), Positives = 832/1253 (66%)

Query:    12 LPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGK 71
             LPP    K     P  QLFSFAD  D+ LM  G+LGA++HG S+PVF   F ++V+ FG 
Sbjct:    84 LPPP---KPLPPAPLRQLFSFADGLDYVLMTLGTLGALVHGCSLPVFLRFFADLVDSFGS 140

Query:    72 NQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQD 131
             +      M   V KYA YF+ +G  +  SS+AEI+CWM+TGERQ + +R +YL A L QD
Sbjct:   141 HAAHPDTMLRLVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTRMRIRYLHAALHQD 200

Query:   132 VGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLS 191
             V FFDTD RT D++ +++ D ++VQDAISEK+GN IHYL+TF++G VVGF +AW+LAL++
Sbjct:   201 VSFFDTDVRTSDVIHAINADAVVVQDAISEKLGNLIHYLATFVSGFVVGFTAAWQLALVT 260

Query:   192 IAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYS 251
             +AV+P IA  GGL A  L  L+S+S+++ ++A  IAEQA+AQ+R V S+VGE + + +YS
Sbjct:   261 LAVVPLIAVIGGLSAAALAKLSSRSQDALSDASGIAEQALAQIRIVQSFVGEERVMRAYS 320

Query:   252 DAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSA 311
              A+    ++GY++G AKG+GLG TY      +AL+ WY G  +R   T+GG A   +FS 
Sbjct:   321 AALAVAQRIGYRSGFAKGIGLGGTYFTVFCCYALLLWYGGHLVRRAHTNGGLAIATMFSV 380

Query:   312 IVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVT 371
             ++GG++LGQS  ++ AF+K + A  K+  +++ KPS+ ++   G  L+ V G +E ++V 
Sbjct:   381 MIGGLALGQSAPSMAAFAKARVAAAKIFRMMEHKPSMERE--GGVELEAVTGRVELRDVE 438

Query:   372 FSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDI 431
             FSYPSRPDV I R  S+  P                    LIERFY+PNAG +LLD  D+
Sbjct:   439 FSYPSRPDVGILRGLSLSVPAGKTIALVGSSGSGKSTVVSLIERFYEPNAGTILLDGHDL 498

Query:   432 KTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPN 491
             + L LRWLR QIGLV+QEPALFATTI EN+L G+                 HSFI  LP+
Sbjct:   499 RDLNLRWLRRQIGLVSQEPALFATTIRENLLLGRDGATQEELEEAARVANAHSFIVKLPD 558

Query:   492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV 551
              Y+TQVGERG+QLSGGQKQRIAIARAML+NP ILLLDEATSALD+ SE +VQEALDR M+
Sbjct:   559 AYNTQVGERGLQLSGGQKQRIAIARAMLRNPAILLLDEATSALDSESEKLVQEALDRFMI 618

Query:   552 GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQEMVRNRDF 610
             GRTT+V+AHRLSTIR  D VAV+Q G + E GTH+EL+A+  G YA LIR QE       
Sbjct:   619 GRTTLVIAHRLSTIRKADLVAVLQGGAISEVGTHDELMARGDGTYARLIRMQEQAHEAAL 678

Query:   611 ANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAD---GRIEMVSNAETDRKN- 666
                                                  + AD   G    V + +  +++ 
Sbjct:   679 VAARRSSARPSSARNSVSSPIITRNSSYGRSPYSRRLSDADFITGLGLGVDSKQQQQQHY 738

Query:   667 -PAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMER 725
                    F RL K+N+PEW Y+++ ++GS++ G     FA V++ ++ V+Y  + A M+R
Sbjct:   739 FRVQASSFWRLAKMNSPEWGYALVASLGSMVCGSFSAIFAYVLSAVLSVYYAPDAAYMDR 798

Query:   726 KTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHN 785
             +  ++ ++ IG    A++   +QH F+  +GENLT RVR  MLAA+LRNE+ WFD E+++
Sbjct:   799 QIAKYCYLLIGMSSAALLFNTVQHLFWDTVGENLTKRVRERMLAAVLRNEIAWFDMEDNS 858

Query:   786 SSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVL 845
             S+ +AARLA DA +V+SAI DRIS+I+QN   +L +    F+++WR++L++L  +PL+V 
Sbjct:   859 SARIAARLALDAQNVRSAIGDRISIIVQNSALMLVACTAGFVLQWRLALVLLAVFPLVVA 918

Query:   846 ANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQ 905
             A   Q++ LKGF+GD  +AHA+ + IAGE V+N+RTVAAF ++ KI+ LF   L  P  +
Sbjct:   919 ATVLQKMFLKGFSGDLERAHARATQIAGEAVANVRTVAAFGSEAKIVGLFEANLAGPLRR 978

Query:   906 TLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAE 965
                +   AG  +G++QF L+AS AL LWY   LV  GVS FSK          +AN  AE
Sbjct:   979 CFWKGQIAGSGYGVAQFLLYASYALGLWYAAWLVKHGVSDFSKTIRVFMVLMVSANGAAE 1038

Query:   966 TVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPV-ETIRGEIELRHVDFAYPSRPD 1024
             T++LAP+ ++GG ++ +VF  +DR T I+PDD DA  V E  RGE+EL+HVDFAYPSRP+
Sbjct:  1039 TLTLAPDFVKGGRAMQAVFEAMDRRTEIEPDDVDAAAVPERPRGEVELKHVDFAYPSRPE 1098

Query:  1025 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 1084
             V VF+D +LR RAG++ ALVGASG GKSSV+AL++RFY+P +G+V++DG+D+R+ NL+SL
Sbjct:  1099 VQVFRDLSLRARAGRTLALVGASGCGKSSVLALVQRFYEPNSGRVLLDGRDLRKFNLRSL 1158

Query:  1085 RLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGE 1144
             R  + LV QEP LFAA+I DNIAYG+EG               H F+SALP  Y T VGE
Sbjct:  1159 RRAMALVPQEPFLFAATIHDNIAYGREGATEAEVVEAATAANAHKFISALPEGYGTLVGE 1218

Query:  1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLV 1203
             RGVQLSGGQ+QRIAIARA++K   ILLLDEATSALDAESE  +QEAL      GRTT++V
Sbjct:  1219 RGVQLSGGQRQRIAIARALVKQAPILLLDEATSALDAESERSVQEALASSSGSGRTTIVV 1278

Query:  1204 AHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR-PDGAYSRLLQLQ---HHHI 1252
             AHRL+T+R    I V+ DG++ EQGSHS L++  PDG Y+R+LQLQ   H H+
Sbjct:  1279 AHRLATVRNAHTIAVIDDGKVAEQGSHSHLLNHHPDGCYARMLQLQRLSHSHV 1331

GO:0005886 "plasma membrane" evidence=IBA

GO:0010315 "auxin efflux" evidence=IBA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IBA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IBA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IBA

GO:0055085 "transmembrane transport" evidence=IBA

TAIR|locus:2010464 ABCB13 "ATP-binding cassette B13" [Arabidopsis thaliana (taxid:3702)]

 Score = 2914 (1030.8 bits), Expect = 1.2e-303, P = 1.2e-303
 Identities = 577/1242 (46%), Positives = 815/1242 (65%)

Query:     9 AKTLPPEAEKK-KEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVN 67
             A+T   E +K  K++S+    LFS ADK D+ LM+ G LGA IHG+++P+FF+ FG+M++
Sbjct:    14 AETEAKEEKKNIKKESVSLMGLFSAADKLDYFLMLLGGLGACIHGATLPLFFVFFGKMLD 73

Query:    68 GFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAV 127
               G   TD   ++  V + ALY VYLGL+   S++  ++CWM TGERQ + LR  YL+++
Sbjct:    74 SLGNLSTDPKAISSRVSQNALYLVYLGLVNFVSAWIGVSCWMQTGERQTARLRINYLKSI 133

Query:   128 LKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRL 187
             L +D+ FFDT+AR  +++F +S+D +LVQDAI +K  + + YLS F+AG V+GF+S W+L
Sbjct:   134 LAKDITFFDTEARDSNLIFHISSDAILVQDAIGDKTDHVLRYLSQFIAGFVIGFLSVWQL 193

Query:   188 ALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKAL 247
              LL++ V+P IA AGG YA  ++ ++ KS  +YA+AG +AE+ ++QVRTVY++VGE KA+
Sbjct:   194 TLLTLGVVPLIAIAGGGYAIVMSTISEKSETAYADAGKVAEEVMSQVRTVYAFVGEEKAV 253

Query:   248 NSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTA 307
              SYS++++  LKLG ++G+AKGLG+G TY +   +WAL+ WYA + +R+G T+G KAFT 
Sbjct:   254 KSYSNSLKKALKLGKRSGLAKGLGVGLTYSLLFCAWALLLWYASLLVRHGKTNGAKAFTT 313

Query:   308 IFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPS-IIQDPTNGRCLDEVNGNIE 366
             I + I  G +LGQ+  +L A +KG+ A   +  +I    S   Q    G  L  V G IE
Sbjct:   314 ILNVIFSGFALGQAAPSLSAIAKGRVAAANIFRMIGNNNSESSQRLDEGTTLQNVAGRIE 373

Query:   367 FKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLL 426
             F+ V+F+YPSRP+++ F + S                        +++RFY+PN+G +LL
Sbjct:   374 FQKVSFAYPSRPNMV-FENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEILL 432

Query:   427 DNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFI 486
             D  DIK+L+L+W R+Q+GLV+QEPALFATTI  NIL GK                  SFI
Sbjct:   433 DGNDIKSLKLKWFREQLGLVSQEPALFATTIASNILLGKENANMDQIIEAAKAANADSFI 492

Query:   487 TLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL 546
               LPNGY+TQVGE G QLSGGQKQRIAIARA+L+NPKILLLDEATSALDA SE IVQ+AL
Sbjct:   493 KSLPNGYNTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQAL 552

Query:   547 DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVR 606
             D +M  RTT+VVAHRLSTIRNVD + V++ GQV ETG+H EL+ + G YA+L+  QE   
Sbjct:   553 DNVMEKRTTIVVAHRLSTIRNVDKIVVLRDGQVRETGSHSELMLRGGDYATLVNCQE--- 609

Query:   607 NRDFANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGADGRIEMVSNAETDRKN 666
                   P                                         E   N ++ +K+
Sbjct:   610 ----TEPQENSRSIMSETCKSQAGSSSSRRVSSSRRTSSFRVDQ----EKTKNDDS-KKD 660

Query:   667 PAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERK 726
              +       L+KLN+PEWPY+++G+IG+VL+G   P F++ +A ++  FY   P  ++R 
Sbjct:   661 FSSSSMIWELIKLNSPEWPYALLGSIGAVLAGAQTPLFSMGIAYVLTAFYSPFPNVIKRD 720

Query:   727 TKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNS 786
              ++   I+ GAG+     YL+QHYF+++MGE LT+RVR  + +AIL NE+GWFD +E+N+
Sbjct:   721 VEKVAIIFAGAGIVTAPIYLLQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNT 780

Query:   787 SLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLA 846
               + + LA DA  V+SA+ADR+S I+QN++  +T+  +AF   WRV+ ++   +PLL+ A
Sbjct:   781 GSLTSILAADATLVRSALADRLSTIVQNLSLTVTALALAFFYSWRVAAVVTACFPLLIAA 840

Query:   847 NFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQT 906
             +  +QL LKGF GD  +A+++ + +A E ++NIRTVAA+ A+ +I   F  EL  P    
Sbjct:   841 SLTEQLFLKGFGGDYTRAYSRATSVAREAIANIRTVAAYGAEKQISEQFTCELSKPTKNA 900

Query:   907 LRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAET 966
               R   +G  +G+SQF    S AL LWY   L+    + F            TA SV+ET
Sbjct:   901 FVRGHISGFGYGLSQFLAFCSYALGLWYVSVLINHKETNFGDSIKSFMVLIVTAFSVSET 960

Query:   967 VSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVV 1026
             ++L P+I++G +++GSVF  L R T+I PD P++  V  ++G+IE R+V F YP+RP++ 
Sbjct:   961 LALTPDIVKGTQALGSVFRVLHRETKISPDQPNSRMVSQVKGDIEFRNVSFVYPTRPEID 1020

Query:  1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
             +FK+ NLR+ AG+S A+VG SGSGKS+VI LI RFYDP+ G + IDG+DI+ LNL+SLR 
Sbjct:  1021 IFKNLNLRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGQDIKTLNLRSLRK 1080

Query:  1087 KIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERG 1146
             K+ LVQQEPALF+ +I++NI YG E                H F+  +   YKT  G++G
Sbjct:  1081 KLALVQQEPALFSTTIYENIKYGNENASEAEIMEAAKAANAHEFIIKMEEGYKTHAGDKG 1140

Query:  1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHR 1206
             VQLSGGQKQR+AIARAVLK+P++LLLDEATSALD  SE ++QEAL++LM+GRTTVLVAHR
Sbjct:  1141 VQLSGGQKQRVAIARAVLKDPSVLLLDEATSALDTSSEKLVQEALDKLMKGRTTVLVAHR 1200

Query:  1207 LSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
             LSTIR  D + V+  GR+VE+GSH ELVS P+G Y +L  LQ
Sbjct:  1201 LSTIRKADTVAVLHKGRVVEKGSHRELVSIPNGFYKQLTSLQ 1242

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IBA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006810 "transport" evidence=IEA

GO:0010315 "auxin efflux" evidence=IBA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IBA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:2010444 ABCB14 "ATP-binding cassette B14" [Arabidopsis thaliana (taxid:3702)]

 Score = 2900 (1025.9 bits), Expect = 3.6e-302, P = 3.6e-302
 Identities = 575/1235 (46%), Positives = 809/1235 (65%)

Query:    15 EAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQT 74
             E +K K++S+    LFS AD  D+ LM  G LG  IHG ++P+FF+ FG M++  GK  T
Sbjct:    22 EKKKMKKESVSLMGLFSAADNVDYFLMFLGGLGTCIHGGTLPLFFVFFGGMLDSLGKLST 81

Query:    75 DIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGF 134
             D + ++  V + ALY VYLGL+   S++  +ACWM TGERQ + LR  YL+++L +D+ F
Sbjct:    82 DPNAISSRVSQNALYLVYLGLVNLVSAWIGVACWMQTGERQTARLRINYLKSILAKDITF 141

Query:   135 FDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAV 194
             FDT+AR  + +F +S+D +LVQDAI +K G+ + YL  F+AG V+GF+S W+L LL++ V
Sbjct:   142 FDTEARDSNFIFHISSDAILVQDAIGDKTGHVLRYLCQFIAGFVIGFLSVWQLTLLTLGV 201

Query:   195 IPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAI 254
             +P IA AGG YA  ++ ++ KS  +YA+AG +AE+ ++QVRTVY++VGE KA+ SYS+++
Sbjct:   202 VPLIAIAGGGYAIVMSTISEKSEAAYADAGKVAEEVMSQVRTVYAFVGEEKAVKSYSNSL 261

Query:   255 QNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVG 314
             +  LKL  ++G+AKGLG+G TY +   +WAL+FWYA + +R+G T+G KAFT I + I  
Sbjct:   262 KKALKLSKRSGLAKGLGVGLTYSLLFCAWALLFWYASLLVRHGKTNGAKAFTTILNVIYS 321

Query:   315 GMSLGQSFSNLGAFSKGKAAGYKLMEII-KQKPSIIQDPTNGRCLDEVNGNIEFKNVTFS 373
             G +LGQ+  +L A SKG+ A   + ++I        +   NG  L  V G IEF  V+F+
Sbjct:   322 GFALGQAVPSLSAISKGRVAAANIFKMIGNNNLESSERLENGTTLQNVVGKIEFCGVSFA 381

Query:   374 YPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKT 433
             YPSRP+++ F + S                        +++RFY+P +G +LLD  DIK 
Sbjct:   382 YPSRPNMV-FENLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDIKN 440

Query:   434 LQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGY 493
             L+L+WLR+Q+GLV+QEPALFATTI  NIL GK                  SFI  LPNGY
Sbjct:   441 LKLKWLREQMGLVSQEPALFATTIASNILLGKEKANMDQIIEAAKAANADSFIKSLPNGY 500

Query:   494 STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR 553
             +TQVGE G QLSGGQKQRIAIARA+L+NPKILLLDEATSALDA SE IVQ+ALD +M  R
Sbjct:   501 NTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEKIVQQALDNVMEKR 560

Query:   554 TTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANP 613
             TT+V+AHRLSTIRNVD + V++ GQV ETG+H ELI++ G YA+L+  Q+     +  + 
Sbjct:   561 TTIVIAHRLSTIRNVDKIVVLRDGQVRETGSHSELISRGGDYATLVNCQDTEPQENLRSV 620

Query:   614 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGADGRIEMVSNAETDRKNPAPDGYF 673
                                                 + G  +++S++             
Sbjct:   621 MYESCRSQAGSYSSRRVFSSRRTSSFREDQEKTEKDSKGE-DLISSSSM----------I 669

Query:   674 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFI 733
               L+KLNAPEW Y+++G+IG+VL+G     F++ +A ++  FY   P+ ++R+  +   I
Sbjct:   670 WELIKLNAPEWLYALLGSIGAVLAGSQPALFSMGLAYVLTTFYSPFPSLIKREVDKVAII 729

Query:   734 YIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARL 793
             ++GAG+     Y++QHYF+++MGE LT+RVR  + +AIL NE+GWFD +E+N+  + + L
Sbjct:   730 FVGAGIVTAPIYILQHYFYTLMGERLTSRVRLSLFSAILSNEIGWFDLDENNTGSLTSIL 789

Query:   794 ATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLS 853
             A DA  V+SAIADR+S I+QN++  +T+  +AF   WRV+ ++   +PLL+ A+  +QL 
Sbjct:   790 AADATLVRSAIADRLSTIVQNLSLTITALALAFFYSWRVAAVVTACFPLLIAASLTEQLF 849

Query:   854 LKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA 913
             LKGF GD  +A+++ + +A E +SNIRTVAAF+A+ +I   F  EL  P    L R   +
Sbjct:   850 LKGFGGDYTRAYSRATSLAREAISNIRTVAAFSAEKQISEQFTCELSKPTKSALLRGHIS 909

Query:   914 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPEI 973
             G  +G+SQ     S AL LWY   L+ +  + F            TA SVAET++L P+I
Sbjct:   910 GFGYGLSQCLAFCSYALGLWYISVLIKRNETNFEDSIKSFMVLLVTAYSVAETLALTPDI 969

Query:   974 IRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNL 1033
             ++G +++GSVF  L R T I PD P++  V  I+G+IE R+V FAYP+RP++ +FK+ NL
Sbjct:   970 VKGTQALGSVFRVLHRETEIPPDQPNSRLVTHIKGDIEFRNVSFAYPTRPEIAIFKNLNL 1029

Query:  1034 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQ 1093
             R+ AG+S A+VG SGSGKS+VI LI RFYDP+ G + IDG DI+ +NL+SLR K+ LVQQ
Sbjct:  1030 RVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGHDIKSVNLRSLRKKLALVQQ 1089

Query:  1094 EPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQ 1153
             EPALF+ SI +NI YG E                H F+S +   Y T VG++GVQLSGGQ
Sbjct:  1090 EPALFSTSIHENIKYGNENASEAEIIEAAKAANAHEFISRMEEGYMTHVGDKGVQLSGGQ 1149

Query:  1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGV 1213
             KQR+AIARAVLK+P++LLLDEATSALD  +E  +QEAL++LM+GRTT+LVAHRLSTIR  
Sbjct:  1150 KQRVAIARAVLKDPSVLLLDEATSALDTSAEKQVQEALDKLMKGRTTILVAHRLSTIRKA 1209

Query:  1214 DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
             D I V+  G++VE+GSH ELVS+ DG Y +L  LQ
Sbjct:  1210 DTIVVLHKGKVVEKGSHRELVSKSDGFYKKLTSLQ 1244

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IBA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0006810 "transport" evidence=IEA

GO:0010315 "auxin efflux" evidence=IBA

GO:0010329 "auxin efflux transmembrane transporter activity" evidence=IBA

GO:0010540 "basipetal auxin transport" evidence=IBA

GO:0010541 "acropetal auxin transport" evidence=IBA

GO:0016021 "integral to membrane" evidence=IEA;IBA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS;IBA

GO:0055085 "transmembrane transport" evidence=IEA;IBA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:2041434 ABCB4 "ATP-binding cassette B4" [Arabidopsis thaliana (taxid:3702)]

 Score = 2626 (929.5 bits), Expect = 3.9e-273, P = 3.9e-273
 Identities = 530/1261 (42%), Positives = 773/1261 (61%)

Query:     3 EPTTEAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLF 62
             E   E  KT   + E +K +++PF++LF+FAD +D+ LMI G+LG++ +G   P+  LLF
Sbjct:    25 EEEEEVKKTEKKDEEHEKTKTVPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLF 84

Query:    63 GEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKK 122
             G++++ FG+NQT+    T +V K AL FV+LG+    +++ +++ WM +GERQ + +R  
Sbjct:    85 GDLIDAFGENQTNT---TDKVSKVALKFVWLGIGTFAAAFLQLSGWMISGERQAARIRSL 141

Query:   123 YLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFV 182
             YL+ +L+QD+ FFD D  TG++V  +S DT+L+QDA+ EKVG  I  L+TF+ G V+ FV
Sbjct:   142 YLKTILRQDIAFFDIDTNTGEVVGRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFV 201

Query:   183 SAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVG 242
               W L L+ ++ IP +  AG L A  +    S+ + +YA A  + EQ I  +RTV S+ G
Sbjct:   202 RGWLLTLVMLSSIPLLVMAGALLAIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTG 261

Query:   243 ESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGG 302
             E +A+++Y+  +    K G   G + GLGLG  + +   S+AL  WY G  I +    GG
Sbjct:   262 EKQAISNYNKHLVTAYKAGVIEGGSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGG 321

Query:   303 KAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVN 362
             +    I + + G MSLGQ+   L AF+ G+AA YK+ E I+++P+I    TNG+ LD++ 
Sbjct:   322 QVLNIIIAVLTGSMSLGQTSPCLSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIK 381

Query:   363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAG 422
             G+IE K+V F+YP+RPD  IFR FS+F                      LIERFYDP AG
Sbjct:   382 GDIELKDVYFTYPARPDEQIFRGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAG 441

Query:   423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXX 482
              VL+D +++K  QL+W+R +IGLV+QEP LF  +I +NI YGK                 
Sbjct:   442 DVLIDGINLKEFQLKWIRSKIGLVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANA 501

Query:   483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
               F+  LP G  T VGE G QLSGGQKQRIA+ARA+LK+P+ILLLDEATSALDA SE +V
Sbjct:   502 SKFVDKLPQGLDTMVGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVV 561

Query:   543 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRF 601
             QEALDR+MV RTTVVVAHRLST+RN D +AVI QG++VE G+H EL+    GAY+ LIR 
Sbjct:   562 QEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRL 621

Query:   602 QEMVRNRDFANPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-----------GA 650
             QE  ++ + A                                    +           G 
Sbjct:   622 QEEKKSDENAAEEQKMSSIESFKQSSLRKSSLGRSLSKGGSSRGNSSRHSFNMFGFPAGI 681

Query:   651 DGRIEMVSNAETDRKNPAPDGY---FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIV 707
             DG + +    E D   P  +       R+  LN PE P  I+G+I +  +G I P F I+
Sbjct:   682 DGNV-VQDQEEDDTTQPKTEPKKVSIFRIAALNKPEIPVLILGSISAAANGVILPIFGIL 740

Query:   708 MACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMM 767
             ++ +I+ F+ + P  ++  T  +  I++  G  +++AY  Q +FF+I G  L  R+R M 
Sbjct:   741 ISSVIKAFF-QPPKKLKEDTSFWAIIFMVLGFASIIAYPAQTFFFAIAGCKLVQRIRSMC 799

Query:   768 LAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFI 827
                ++  EVGWFDE E++S  + ARL+ DAA ++  + D ++  +QN++S+L   I+AF+
Sbjct:   800 FEKVVHMEVGWFDEPENSSGTIGARLSADAATIRGLVGDSLAQTVQNLSSILAGLIIAFL 859

Query:   828 VEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNA 887
               W+++ ++L   PL+ L  F     +KGF+ D  K + + S +A + V +IRTVA+F A
Sbjct:   860 ACWQLAFVVLAMLPLIALNGFLYMKFMKGFSADAKKMYGEASQVANDAVGSIRTVASFCA 919

Query:   888 QNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFS 947
             ++K+++++  +   P    +R+ + +GI FG S F L +S A   + G  LV  G +TF 
Sbjct:   920 EDKVMNMYSKKCEGPMKNGIRQGIVSGIGFGFSFFVLFSSYAASFYVGARLVDDGKTTFD 979

Query:   948 KXXXXXXXXXXTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIR 1007
                         A +++++ SL+P+  +   +  S+F+ +DR ++IDP       ++ ++
Sbjct:   980 SVFRVFFALTMAAMAISQSSSLSPDSSKADVAAASIFAIMDRESKIDPSVESGRVLDNVK 1039

Query:  1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
             G+IELRHV F YP+RPDV +F+D  L IRAG++ ALVG SGSGKS+VIAL++RFYDP +G
Sbjct:  1040 GDIELRHVSFKYPARPDVQIFQDLCLSIRAGKTVALVGESGSGKSTVIALLQRFYDPDSG 1099

Query:  1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXX- 1126
             ++ +DG +I+ L LK LR + GLV QEP LF  +I  NIAYGK G               
Sbjct:  1100 EITLDGVEIKSLRLKWLRQQTGLVSQEPILFNETIRANIAYGKGGDASESEIVSSAELSN 1159

Query:  1127 XHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 1186
              HGF+S L   Y T VGERG+QLSGGQKQR+AIARA++K+P +LLLDEATSALDAESE V
Sbjct:  1160 AHGFISGLQQGYDTMVGERGIQLSGGQKQRVAIARAIVKDPKVLLLDEATSALDAESERV 1219

Query:  1187 LQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 1246
             +Q+AL+R+M  RTT++VAHRLSTI+  D I VV++G IVE+G H  L++  DG Y+ L+Q
Sbjct:  1220 VQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGVIVEKGKHDTLINIKDGVYASLVQ 1279

Query:  1247 L 1247
             L
Sbjct:  1280 L 1280

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0008559 "xenobiotic-transporting ATPase activity" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009735 "response to cytokinin stimulus" evidence=IEP;RCA

GO:0009926 "auxin polar transport" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0009630 "gravitropism" evidence=IMP

GO:0010540 "basipetal auxin transport" evidence=IMP

GO:0010315 "auxin efflux" evidence=IMP

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P36619	PMD1_SCHPO	No assigned EC number	0.3380	0.9712	0.8928	yes	no
P21449	MDR2_CRIGR	3, ., 6, ., 3, ., 4, 4	0.3909	0.9672	0.9490	yes	no
P08183	MDR1_HUMAN	3, ., 6, ., 3, ., 4, 4	0.3894	0.9744	0.9531	yes	no
P21447	MDR1A_MOUSE	3, ., 6, ., 3, ., 4, 4	0.3811	0.9680	0.9498	yes	no
Q9LJX0	AB19B_ARATH	No assigned EC number	0.8913	1.0	1.0	yes	no
Q54BT3	ABCB2_DICDI	No assigned EC number	0.4073	0.9880	0.8854	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!
3rd Layer	3.6.3.44	LOW CONFIDENCE prediction!
3rd Layer	2.7.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1252
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	1e-152
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	1e-133
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	1e-133
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	1e-130
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	1e-125
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	1e-122
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	1e-122
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	1e-116
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	1e-114
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	1e-110
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	1e-110
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	1e-109
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	1e-103
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	1e-102
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	1e-102
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	1e-100
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	4e-97
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	9e-96
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	3e-93
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	3e-92
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	6e-89
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	9e-82
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	5e-81
COG5265	497	COG5265, ATM1, ABC-type transport system involved	8e-81
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	9e-81
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	8e-80
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	1e-79
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	2e-79
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	2e-78
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	6e-78
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	5e-77
COG5265	497	COG5265, ATM1, ABC-type transport system involved	2e-76
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	4e-76
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	1e-74
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	2e-71
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	2e-71
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	6e-71
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	1e-69
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	1e-68
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	1e-66
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	8e-66
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	2e-64
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	3e-64
COG4988	559	COG4988, CydD, ABC-type transport system involved	9e-64
COG4988	559	COG4988, CydD, ABC-type transport system involved	1e-63
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	4e-63
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	7e-63
COG4987	573	COG4987, CydC, ABC-type transport system involved	1e-62
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	2e-62
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	2e-61
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	1e-59
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	6e-59
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	7e-59
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	3e-58
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	3e-58
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	3e-58
COG4987	573	COG4987, CydC, ABC-type transport system involved	7e-58
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	2e-56
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	3e-56
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	6e-56
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	6e-55
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	7e-55
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	1e-52
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	5e-52
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	4e-51
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	3e-50
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	6e-50
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	1e-48
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	3e-47
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	4e-47
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	6e-47
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	8e-47
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	4e-46
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	6e-46
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	3e-45
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	3e-44
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	4e-44
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	3e-43
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	4e-43
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	9e-43
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	2e-42
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	6e-42
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	1e-41
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	1e-41
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	1e-41
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	1e-41
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	2e-41
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	2e-41
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	4e-41
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	4e-41
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	5e-41
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	7e-41
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	1e-40
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	1e-40
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	2e-40
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	3e-40
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	4e-40
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	4e-40
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	5e-40
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	6e-40
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	1e-39
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	1e-39
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	2e-39
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	2e-39
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	3e-39
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	7e-39
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	1e-38
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	2e-38
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	4e-38
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	8e-38
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-37
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	2e-37
pfam00664	274	pfam00664, ABC_membrane, ABC transporter transmemb	2e-37
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	3e-37
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	3e-37
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	4e-37
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	1e-36
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	2e-36
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	3e-36
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	4e-36
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	4e-36
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	4e-36
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	4e-36
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	7e-36
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	7e-36
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	1e-35
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	1e-35
cd03288	257	cd03288, ABCC_SUR2, ATP-binding cassette domain 2	1e-35
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	1e-35
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	2e-35
pfam00664	274	pfam00664, ABC_membrane, ABC transporter transmemb	2e-35
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	4e-35
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	6e-35
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	7e-35
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	8e-35
COG1123	539	COG1123, COG1123, ATPase components of various ABC	8e-35
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	2e-34
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	3e-34
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	6e-34
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	8e-34
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	1e-33
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	1e-33
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	1e-33
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	2e-33
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	2e-33
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	2e-33
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	2e-33
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	3e-33
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	3e-33
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	4e-33
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	4e-33
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	5e-33
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	7e-33
COG1123	539	COG1123, COG1123, ATPase components of various ABC	8e-33
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	8e-33
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	1e-32
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	2e-32
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	2e-32
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	2e-32
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	3e-32
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	3e-32
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	4e-32
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	6e-32
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	6e-32
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	6e-32
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	1e-31
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	1e-31
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	2e-31
cd03288	257	cd03288, ABCC_SUR2, ATP-binding cassette domain 2	3e-31
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	3e-31
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	5e-31
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	5e-31
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	6e-31
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	7e-31
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	7e-31
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	8e-31
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	8e-31
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	9e-31
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	9e-31
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	9e-31
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	2e-30
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	2e-30
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	3e-30
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	3e-30
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	4e-30
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	5e-30
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	5e-30
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	6e-30
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	6e-30
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	6e-30
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	1e-29
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	1e-29
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	1e-29
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	2e-29
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	2e-29
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	3e-29
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	3e-29
COG1123	539	COG1123, COG1123, ATPase components of various ABC	4e-29
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	4e-29
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	4e-29
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	6e-29
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	6e-29
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	6e-29
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	7e-29
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	1e-28
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	1e-28
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	1e-28
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	2e-28
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	3e-28
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	3e-28
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	3e-28
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	4e-28
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	4e-28
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	5e-28
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	5e-28
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	6e-28
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	6e-28
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	1e-27
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	2e-27
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	2e-27
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	2e-27
pfam00005	119	pfam00005, ABC_tran, ABC transporter	2e-27
COG4598	256	COG4598, HisP, ABC-type histidine transport system	2e-27
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	2e-27
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	3e-27
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	4e-27
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	5e-27
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	6e-27
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	7e-27
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	7e-27
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	7e-27
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	7e-27
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	1e-26
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	1e-26
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	1e-26
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	1e-26
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	1e-26
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	2e-26
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	2e-26
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	2e-26
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	2e-26
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	2e-26
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	2e-26
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	2e-26
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	2e-26
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	2e-26
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	3e-26
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	3e-26
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	3e-26
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	3e-26
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	3e-26
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	3e-26
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	3e-26
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	4e-26
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	4e-26
pfam00005	119	pfam00005, ABC_tran, ABC transporter	4e-26
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	4e-26
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	4e-26
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	4e-26
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	5e-26
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	5e-26
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	5e-26
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	6e-26
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	6e-26
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	6e-26
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	7e-26
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	8e-26
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	1e-25
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	1e-25
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	2e-25
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	2e-25
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	2e-25
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	2e-25
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	2e-25
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	2e-25
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	3e-25
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	3e-25
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	3e-25
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	3e-25
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	3e-25
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	3e-25
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	3e-25
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	3e-25
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	4e-25
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	4e-25
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	5e-25
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	5e-25
COG4598	256	COG4598, HisP, ABC-type histidine transport system	6e-25
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	7e-25
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	7e-25
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	9e-25
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	1e-24
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	1e-24
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	1e-24
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	1e-24
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	1e-24
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	1e-24
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	1e-24
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	1e-24
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	1e-24
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	2e-24
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	2e-24
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	2e-24
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	3e-24
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	3e-24
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	3e-24
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	3e-24
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	4e-24
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	4e-24
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	5e-24
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	6e-24
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	6e-24
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	7e-24
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	7e-24
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	7e-24
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	7e-24
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	8e-24
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	8e-24
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	9e-24
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	9e-24
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	9e-24
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	9e-24
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	1e-23
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	1e-23
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	2e-23
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	2e-23
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	2e-23
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	2e-23
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	2e-23
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	2e-23
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	3e-23
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	3e-23
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	3e-23
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	3e-23
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	3e-23
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	4e-23
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	4e-23
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	4e-23
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	4e-23
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	5e-23
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	5e-23
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	6e-23
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	6e-23
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	1e-22
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	1e-22
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	1e-22
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	2e-22
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	2e-22
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	2e-22
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	2e-22
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	2e-22
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	3e-22
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	3e-22
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	3e-22
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	4e-22
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	4e-22
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	4e-22
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	4e-22
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	5e-22
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	5e-22
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	6e-22
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	8e-22
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	1e-21
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	2e-21
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	2e-21
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	2e-21
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	2e-21
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	2e-21
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	3e-21
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	3e-21
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	3e-21
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	3e-21
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	3e-21
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	3e-21
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	3e-21
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	5e-21
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	5e-21
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	5e-21
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	6e-21
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	6e-21
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	6e-21
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	7e-21
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	8e-21
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	8e-21
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	1e-20
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	1e-20
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	1e-20
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	1e-20
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	2e-20
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	2e-20
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	2e-20
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	2e-20
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-20
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	2e-20
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	2e-20
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	2e-20
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	3e-20
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	3e-20
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	3e-20
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	3e-20
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	3e-20
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	3e-20
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	3e-20
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	3e-20
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	3e-20
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	3e-20
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	3e-20
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	4e-20
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	4e-20
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	4e-20
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	4e-20
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	4e-20
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	5e-20
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	6e-20
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	8e-20
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	8e-20
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	9e-20
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	1e-19
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	2e-19
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	2e-19
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	2e-19
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	2e-19
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	2e-19
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	2e-19
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	3e-19
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	3e-19
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	3e-19
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	3e-19
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	3e-19
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	3e-19
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	4e-19
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	4e-19
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	4e-19
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	5e-19
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	6e-19
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	6e-19
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	6e-19
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	6e-19
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	7e-19
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	8e-19
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	8e-19
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	8e-19
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	8e-19
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	1e-18
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	1e-18
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	1e-18
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	1e-18
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	1e-18
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	2e-18
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	2e-18
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	2e-18
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	2e-18
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	3e-18
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	3e-18
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	3e-18
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	4e-18
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	5e-18
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	5e-18
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	6e-18
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	7e-18
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	7e-18
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	9e-18
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	9e-18
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	1e-17
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	1e-17
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	1e-17
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	1e-17
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	1e-17
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	1e-17
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	1e-17
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	1e-17
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	1e-17
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	1e-17
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	1e-17
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	2e-17
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-17
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	2e-17
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	2e-17
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	3e-17
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	3e-17
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	4e-17
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	4e-17
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	4e-17
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	5e-17
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	7e-17
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	7e-17
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	7e-17
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	8e-17
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	9e-17
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	1e-16
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	1e-16
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	1e-16
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	1e-16
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	2e-16
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	2e-16
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	2e-16
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	2e-16
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	3e-16
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	3e-16
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	4e-16
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	4e-16
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	5e-16
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	5e-16
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	6e-16
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	6e-16
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	6e-16
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	7e-16
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	7e-16
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	7e-16
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	1e-15
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	1e-15
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	2e-15
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	2e-15
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	2e-15
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	3e-15
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	3e-15
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	3e-15
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	3e-15
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	4e-15
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	4e-15
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	4e-15
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	5e-15
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	5e-15
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	6e-15
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	6e-15
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	6e-15
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	6e-15
COG4133	209	COG4133, CcmA, ABC-type transport system involved	6e-15
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	7e-15
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	7e-15
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	7e-15
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	7e-15
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	7e-15
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	8e-15
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	9e-15
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	1e-14
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	1e-14
COG4133	209	COG4133, CcmA, ABC-type transport system involved	1e-14
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	1e-14
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	1e-14
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	1e-14
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	2e-14
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	2e-14
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	2e-14
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	2e-14
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	2e-14
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	2e-14
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	3e-14
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	3e-14
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	3e-14
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	4e-14
PRK10418	254	PRK10418, nikD, nickel transporter ATP-binding pro	4e-14
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	4e-14
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	5e-14
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	5e-14
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	6e-14
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	7e-14
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	7e-14
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	7e-14
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	9e-14
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	1e-13
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	1e-13
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	1e-13
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	1e-13
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	2e-13
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	2e-13
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	2e-13
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	2e-13
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	2e-13
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	3e-13
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	3e-13
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	3e-13
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	3e-13
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	3e-13
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	3e-13
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	3e-13
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	4e-13
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	4e-13
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	6e-13
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	1e-12
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	1e-12
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	2e-12
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	2e-12
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	2e-12
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	2e-12
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	2e-12
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	2e-12
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	3e-12
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	3e-12
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	3e-12
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	3e-12
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	3e-12
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	3e-12
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	4e-12
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	5e-12
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	6e-12
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	6e-12
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	6e-12
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	7e-12
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	8e-12
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	1e-11
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	1e-11
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	1e-11
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	2e-11
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	2e-11
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	2e-11
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	3e-11
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	4e-11
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	4e-11
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	4e-11
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	5e-11
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	5e-11
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	6e-11
smart00382	148	smart00382, AAA, ATPases associated with a variety	6e-11
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	7e-11
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	8e-11
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	8e-11
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	9e-11
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	9e-11
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	1e-10
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	2e-10
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	2e-10
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	3e-10
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	4e-10
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	4e-10
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	4e-10
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	5e-10
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	6e-10
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	7e-10
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	7e-10
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	7e-10
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	7e-10
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	9e-10
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	1e-09
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	1e-09
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	2e-09
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	2e-09
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	2e-09
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	3e-09
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	4e-09
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	4e-09
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	5e-09
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	8e-09
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	9e-09
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	9e-09
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	9e-09
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	2e-08
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	4e-08
smart00382	148	smart00382, AAA, ATPases associated with a variety	4e-08
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	6e-08
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	6e-08
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	7e-08
TIGR00954	659	TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra	8e-08
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	9e-08
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	1e-07
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	1e-07
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	1e-07
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	2e-07
COG4170	330	COG4170, SapD, ABC-type antimicrobial peptide tran	2e-07
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	3e-07
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	3e-07
PRK15093	330	PRK15093, PRK15093, antimicrobial peptide ABC tran	4e-07
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	5e-07
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	5e-07
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	5e-07
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	5e-07
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	6e-07
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	7e-07
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	8e-07
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	8e-07
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	9e-07
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	1e-06
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-06
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-06
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	3e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	3e-06
PRK15093	330	PRK15093, PRK15093, antimicrobial peptide ABC tran	4e-06
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	4e-06
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	4e-06
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	5e-06
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	6e-06
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	8e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	8e-06
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	1e-05
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	1e-05
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	1e-05
COG0178	935	COG0178, UvrA, Excinuclease ATPase subunit [DNA re	1e-05
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	2e-05
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	2e-05
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	2e-05
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	4e-05
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	4e-05
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	4e-05
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	4e-05
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	4e-05
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	5e-05
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	6e-05
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	8e-05
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	9e-05
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	9e-05
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	1e-04
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	1e-04
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	1e-04
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	1e-04
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	1e-04
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	1e-04
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-04
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	2e-04
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	2e-04
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	2e-04
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	2e-04
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	2e-04
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	2e-04
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	2e-04
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	3e-04
COG0178	935	COG0178, UvrA, Excinuclease ATPase subunit [DNA re	3e-04
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	3e-04
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	4e-04
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	4e-04
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	5e-04
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	6e-04
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	6e-04
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	7e-04
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	8e-04
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	8e-04
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	0.001
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	0.001
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	0.001
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	0.001
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	0.002
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	0.002
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	0.002
PRK13546	264	PRK13546, PRK13546, teichoic acids export protein	0.002
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	0.002
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	0.004
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	0.004
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	0.004
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.004

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score =  455 bits (1173), Expect = e-152
 Identities = 170/238 (71%), Positives = 193/238 (81%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IEFKNV+F YPSRPDV I +  S+  P GKTVA+VG SG GKSTVVSL+ERFYDP +G +
Sbjct: 1   IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 484
           LLD VDI+ L LRWLR QIGLV+QEP LF  TI ENI YGKP+AT  EVE AA  AN H 
Sbjct: 61  LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120

Query: 485 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 544
           FI  LP+GY T VGERG QLSGGQKQRIAIARA+L+NPKILLLDEATSALDA SE +VQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180

Query: 545 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 602
           ALDR M GRTT+V+AHRLSTIRN D +AV+Q GQVVE GTH+EL+A+ G YA L++ Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLVKAQ 238

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score =  406 bits (1047), Expect = e-133
 Identities = 147/239 (61%), Positives = 194/239 (81%), Gaps = 1/239 (0%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE ++V F YPSRPDV + K  +L I  G++ ALVG+SG GKS+V++L+ERFYDPT+G++
Sbjct: 1    IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHG 1129
            ++DG DIR LNL+ LR +IGLV QEP LF  +I +NI YGK  AT+ EV EAA+ AN+H 
Sbjct: 61   LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120

Query: 1130 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 1189
            F+ +LP+ Y T VGERG QLSGGQKQRIAIARA+L+NP ILLLDEATSALDAESE ++QE
Sbjct: 121  FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180

Query: 1190 ALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            AL+R M+GRTT+++AHRLSTIR  D I V+Q+G++VEQG+H EL+++  G Y++L++ Q
Sbjct: 181  ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLVKAQ 238

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score =  417 bits (1075), Expect = e-133
 Identities = 196/579 (33%), Positives = 319/579 (55%), Gaps = 16/579 (2%)

Query: 25  PFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVC 84
              +L  +       L++   L  +    S+ +  LL G +++    +         E+ 
Sbjct: 3   LLRRLLKYL--KYKLLLLAILLLLLSALLSL-LLPLLIGRIIDALLAD-------LGELL 52

Query: 85  KYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDI 144
           +  L  + L L+       +       G++ V+ LR+   E +L+  + FFD  A++GD+
Sbjct: 53  ELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFD-KAKSGDL 111

Query: 145 VFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGL 204
           +  ++ D   V + +S  +      +   +  LV+ F  +WRLAL+ + ++P +A    L
Sbjct: 112 ISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSL 171

Query: 205 YAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKA 264
            A     L+ + RE+         ++++ +R + ++  E + L  + +A +   +   +A
Sbjct: 172 LARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRA 231

Query: 265 GMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSN 324
              + L       ++ +   LV    G  + +G    G     I   +     + Q    
Sbjct: 232 SRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEV 291

Query: 325 LGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFR 384
           +    +  AA  +L E++ ++P +   P     L +  G+IEF+NV+FSYP +  V+  +
Sbjct: 292 VSLLQRASAAAERLFELLDEEPEVEDPPDP---LKDTIGSIEFENVSFSYPGKKPVL--K 346

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 444
           D S     G+ VA+VG SGSGKST++ L+ R YDP +G +L+D +DI+ + L  LR +IG
Sbjct: 347 DISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406

Query: 445 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQL 504
           +V+Q+P LF+ TI ENI  G+P+AT  E+E A   ANAH FI  LP+GY T VGERGV L
Sbjct: 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466

Query: 505 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLST 564
           SGGQ+QR+AIARA+L+NP IL+LDEATSALD  +E+++Q+AL +L+ GRTT+++AHRLST
Sbjct: 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLST 526

Query: 565 IRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQE 603
           I+N D + V+  G++VE GTHEEL+AK G YA L + Q 
Sbjct: 527 IKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQG 565

Length = 567

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score =  411 bits (1058), Expect = e-130
 Identities = 197/537 (36%), Positives = 309/537 (57%), Gaps = 9/537 (1%)

Query: 67  NGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEA 126
           +GF K+ +        + +Y  + + + L++   + A      + GER V+ +R+     
Sbjct: 47  HGFSKDSS------GLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAH 100

Query: 127 VLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWR 186
           ++     FFD   R+G++V  ++TDT L+Q  I   +   +      + GL++ F+++ +
Sbjct: 101 LISLSPSFFDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPK 159

Query: 187 LALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKA 246
           L  L +  +P +     L+   +  L+ +S++  A+AG  A + +  +RTV ++  E   
Sbjct: 160 LTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAE 219

Query: 247 LNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFT 306
            + +  A++   +   +    + L       +   +   V W     +  G    G    
Sbjct: 220 RSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQ 279

Query: 307 AIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLD-EVNGNI 365
            +F A++   S+G      G   +   A  +L+E+++ +P I + P + + L   + G I
Sbjct: 280 FVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDI-KAPAHPKTLPVPLRGEI 338

Query: 366 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 425
           EF+ V F+YP+RPD       ++    G+TVA+VG SG+GKST+  L+ RFYDP +G +L
Sbjct: 339 EFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL 398

Query: 426 LDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSF 485
           LD VD++ L    LR ++ LV Q+P LFA +++ENI YG+P+AT  EVEAAA AA+AH F
Sbjct: 399 LDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEF 458

Query: 486 ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEA 545
           I+ LP GY T +GERGV LSGGQ+QRIAIARA+LK+  ILLLDEATSALDA SE +VQ+A
Sbjct: 459 ISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQA 518

Query: 546 LDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 602
           L+ LM GRTT+++AHRL+T+   D + V+ QG++V  GTH ELIAK G YA L R Q
Sbjct: 519 LETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score =  398 bits (1024), Expect = e-125
 Identities = 195/575 (33%), Positives = 313/575 (54%), Gaps = 14/575 (2%)

Query: 674  LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFI 733
            LR L          ++  +  +LS  +     +++  +I+         +E      + +
Sbjct: 4    LRRLLKYLKYKLL-LLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLE-----LLLL 57

Query: 734  YIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARL 793
             +   L   V   +Q Y  S +G+ +   +RR +   +LR  + +FD+    S  + +RL
Sbjct: 58   LLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK--AKSGDLISRL 115

Query: 794  ATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLS 853
              D   V + ++  + ++  ++  L+ S ++ F + WR++L++L   PLL L        
Sbjct: 116  TNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARK 175

Query: 854  LKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA 913
             +  +    +A  + +    E +S IR + AF A+++ L  F       +   LR S   
Sbjct: 176  SRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLE 235

Query: 914  GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEI 973
             +L  +          L+L  G  LV  G  T   +    + L+     + +   +   +
Sbjct: 236  ALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLL 295

Query: 974  IRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNL 1033
             R   +   +F  LD    +  D PD        G IE  +V F+YP      V KD + 
Sbjct: 296  QRASAAAERLFELLDEEPEV-EDPPDPLKDT--IGSIEFENVSFSYP--GKKPVLKDISF 350

Query: 1034 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQ 1093
             I  G+  A+VG SGSGKS++I L+ R YDPT+G+++IDG DIR ++L SLR +IG+V Q
Sbjct: 351  SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQ 410

Query: 1094 EPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 1153
            +P LF+ +I +NIA G+  AT+ E+ EA + AN H F++ LP+ Y T VGERGV LSGGQ
Sbjct: 411  DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQ 470

Query: 1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGV 1213
            +QR+AIARA+L+NP IL+LDEATSALD E+E ++Q+AL++L++GRTT+++AHRLSTI+  
Sbjct: 471  RQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNA 530

Query: 1214 DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            D I V+ +GRIVE+G+H EL+++  G Y+RL Q Q
Sbjct: 531  DRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQ 564

Length = 567

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score =  389 bits (1000), Expect = e-122
 Identities = 203/531 (38%), Positives = 302/531 (56%), Gaps = 6/531 (1%)

Query: 719  NPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGW 778
            +  S     + F F+ + A + A+     + Y  + +GE +   +RR + A ++     +
Sbjct: 50   SKDSSGLLNRYFAFLLVVALVLAL-GTAARFYLVTWLGERVVADIRRAVFAHLISLSPSF 108

Query: 779  FDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILG 838
            FD+    S  V +RL TD   ++S I   +S+ L+N    +   I+ FI   +++ L+L 
Sbjct: 109  FDKNR--SGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLL 166

Query: 839  TYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHE 898
              PL++L        ++  + ++    A     AGE +  IRTV AF  ++   S F   
Sbjct: 167  AVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGA 226

Query: 899  LRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVV 958
            +        +R  T  +L  I    +  +   +LW G H V  G  +   + +     V+
Sbjct: 227  VEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVM 286

Query: 959  TANSVAETVSLAPEIIRGGESVGSVFSTLD-RSTRIDPDDPDAEPVETIRGEIELRHVDF 1017
             A S+     +  E+ R   +   +   L        P  P   PV  +RGEIE   V+F
Sbjct: 287  VAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVP-LRGEIEFEQVNF 345

Query: 1018 AYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR 1077
            AYP+RPD       NL +R G++ ALVG SG+GKS++  L+ RFYDP +G++++DG D+R
Sbjct: 346  AYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLR 405

Query: 1078 RLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA 1137
            +L+   LR ++ LV Q+P LFAAS+ +NI YG+  AT+ EV  AARAA+ H F+SALP  
Sbjct: 406  QLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEG 465

Query: 1138 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG 1197
            Y T +GERGV LSGGQ+QRIAIARA+LK+  ILLLDEATSALDAESE ++Q+ALE LM+G
Sbjct: 466  YDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKG 525

Query: 1198 RTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            RTT+++AHRL+T+   D I V+  GRIV QG+H+EL+    G Y+RL +LQ
Sbjct: 526  RTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELI-AKGGLYARLARLQ 575

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score =  395 bits (1017), Expect = e-122
 Identities = 204/602 (33%), Positives = 316/602 (52%), Gaps = 40/602 (6%)

Query: 14  PEAEKKKEQS---LPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLF----GEMV 66
            E E ++ QS      F+L   +   DW  +I               F  L     GEM 
Sbjct: 134 SEKEAEQGQSETADLLFRLLGLS-GRDWPWLISA-------------FVFLTLSSLGEMF 179

Query: 67  NGFGKNQ-TDIHKMTHEVCKYALYFVYLGLIVCFSSYAE---IACWMYTGERQVSTLRKK 122
             F   +  D           A    ++ L+   SS +       + YT  R    +R+ 
Sbjct: 180 IPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIRED 239

Query: 123 YLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFV 182
              ++L+QD+GFFD   +TG++   +S+DT  +  ++S  V   +  L   L  L     
Sbjct: 240 LFRSLLRQDLGFFDE-NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW 298

Query: 183 SAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVG 242
            + RL ++++  +P +  A  ++      L+ + +E+ A A  +AE+A++ +RTV S+  
Sbjct: 299 LSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAA 358

Query: 243 ESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAG-VFIRNGVTDG 301
           E    + + +A++ TL+L  +  +A    L  T  +  +   LV +Y G + +   V+ G
Sbjct: 359 EEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSG 418

Query: 302 GKAFTAIFSAIVGGMSLGQSFSNLGAFSKG--KAAGY--KLMEIIKQKPSIIQDPTNGRC 357
                 + S ++    LG++   L     G  +A G   K+ E + +KP+I    T    
Sbjct: 419 N-----LVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNI--PLTGTLA 471

Query: 358 LDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY 417
              + G IEF++V+FSYP+RPDV + +  +     G+ VA+VG SGSGKSTV +L++  Y
Sbjct: 472 PLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY 531

Query: 418 DPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAA 477
            P  G VLLD V +      +L  Q+ LV QEP LF+ ++ ENI YG  +    E+ AAA
Sbjct: 532 QPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAA 591

Query: 478 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
            AANAH FI   PNGY T+VGE+G QLSGGQKQRIAIARA+++ P++L+LDEATSALDA 
Sbjct: 592 KAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE 651

Query: 538 SESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYAS 597
            E ++QE   R    RT +++AHRLST+   D + V+++G VVE GTH++L+   G Y  
Sbjct: 652 CEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKH 709

Query: 598 LI 599
           L+
Sbjct: 710 LV 711

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score =  378 bits (972), Expect = e-116
 Identities = 188/589 (31%), Positives = 300/589 (50%), Gaps = 44/589 (7%)

Query: 674  LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVF--YYRNPASMERKTKEFV 731
             RLL L+  +WP+ I                 + ++ + E+F  +Y           +  
Sbjct: 150  FRLLGLSGRDWPWLISA------------FVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP 197

Query: 732  FIYIGA----GLYAVVAYLIQHY---FFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEH 784
                 A     L ++ + +        F+     +  R+R  +  ++LR ++G+FDE  +
Sbjct: 198  PALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDE--N 255

Query: 785  NSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLV 844
             +  + +RL++D   +  +++  ++V+L+N+  LL        +  R++++ L   PL+ 
Sbjct: 256  KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVF 315

Query: 845  LAN-----FAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHEL 899
            LA        Q LS +       +A AK + +A E +S +RTV +F A+    S F   L
Sbjct: 316  LAEKVFGKRYQLLSEE-----LQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEAL 370

Query: 900  RVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVT 959
                    R++L        +       + L+L+YG  LV  G  +   ++   +     
Sbjct: 371  EETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQL 430

Query: 960  ANSVAETVSLAPEIIRGGESVGS---VFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVD 1016
              +V     +   ++   ++VG+   VF  LDR   I      A     + G IE + V 
Sbjct: 431  GEAVRVLSYVYSGMM---QAVGASEKVFEYLDRKPNIPLTGTLAPL--NLEGLIEFQDVS 485

Query: 1017 FAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI 1076
            F+YP+RPDV V K     +  G+  ALVG SGSGKS+V AL++  Y PT G+V++DG  +
Sbjct: 486  FSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPL 545

Query: 1077 RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPN 1136
             + +   L  ++ LV QEP LF+ S+ +NIAYG     + E++ AA+AAN H F+   PN
Sbjct: 546  VQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPN 605

Query: 1137 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 1196
             Y T VGE+G QLSGGQKQRIAIARA+++ P +L+LDEATSALDAE E +LQE+  R   
Sbjct: 606  GYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSR--A 663

Query: 1197 GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 1245
             RT +L+AHRLST+   D I V++ G +VE G+H +L+      Y  L+
Sbjct: 664  SRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQG-CYKHLV 711

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score =  356 bits (916), Expect = e-114
 Identities = 144/234 (61%), Positives = 178/234 (76%), Gaps = 1/234 (0%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +EFKNVTF YP     ++ RD S+  PAG+TVA+VG SGSGKST+V+LI RFYD ++G +
Sbjct: 1   VEFKNVTFRYPGDGPPVL-RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 484
           L+D  D++   L  LR QIGLV+Q+  LF  T+ ENI YG+P AT  EVE AA AANAH 
Sbjct: 60  LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119

Query: 485 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 544
           FI  LP GY T +GERGV+LSGGQ+QRIAIARA+LK+P IL+LDEATSALD  SE +VQ 
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179

Query: 545 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASL 598
           AL+RLM  RTT V+AHRLSTI N D + V++ G++VE GTHEEL+A+ G YA L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score =  358 bits (921), Expect = e-110
 Identities = 185/580 (31%), Positives = 300/580 (51%), Gaps = 17/580 (2%)

Query: 673  FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMI-EVFYYRNPASMERKTKEFV 731
            F RL     P     ++  +  +L      T A ++  ++ + F  R+ + +       +
Sbjct: 2    FRRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVI 61

Query: 732  FIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAA 791
             + +  G    +   +  Y  S +   +   +R  M   +L   V +FD     +  + +
Sbjct: 62   GLAVLRG----ICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLS 115

Query: 792  RLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQ 851
            R+  D+  V SA  D   V+++   +++  FIV     W+++L+++   P+L +      
Sbjct: 116  RITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVS 175

Query: 852  LSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 911
              L+  + +   +  + + +A E +   R V  F  Q      F       +   ++ + 
Sbjct: 176  KRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTS 235

Query: 912  TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAP 971
               I   I+Q     + A++L+  +     G  T          ++     +    ++  
Sbjct: 236  AGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNA 295

Query: 972  EIIRGGESVGSVFSTLDRSTRIDPDDPDA--EPVETIRGEIELRHVDFAYPSRPDVVVFK 1029
             + RG  +  S+F+ LD      P + D     +E  RG++E R+V F YP R D     
Sbjct: 296  PMQRGLAAAESLFTLLD-----SPPEKDTGTRAIERARGDVEFRNVTFRYPGR-DRPALD 349

Query: 1030 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089
              +L I  G++ ALVG SGSGKS+++ LI RFY+P +G++++DG D+    L SLR ++ 
Sbjct: 350  SISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409

Query: 1090 LVQQEPALFAASIFDNIAYGK-EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 1148
            LV Q+  LF  +I +NIAYG+ E A  AE+  A  AA    FV  LP    TP+GE GV 
Sbjct: 410  LVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVL 469

Query: 1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLS 1208
            LSGGQ+QR+AIARA+LK+  IL+LDEATSALD ESE ++Q ALERLM+GRTT+++AHRLS
Sbjct: 470  LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLS 529

Query: 1209 TIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            TI   D I V+ DGRIVE+G+H+EL++R +G Y++L  +Q
Sbjct: 530  TIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQLHNMQ 568

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score =  357 bits (918), Expect = e-110
 Identities = 194/584 (33%), Positives = 303/584 (51%), Gaps = 24/584 (4%)

Query: 26  FFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCK 85
           F +L+S+   Y    ++   +  ++  ++      L   +++  G    D          
Sbjct: 2   FRRLWSYVRPY-KAGLVLAGVAMILVAATESTLAALLKPLLDD-GFGGRDRSV------- 52

Query: 86  YALYFVYLGLIVCF-----SSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDAR 140
             L++V L +I         S+       +   + V  +R +  E +L   V FFD    
Sbjct: 53  --LWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQP- 109

Query: 141 TGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAF 200
           TG ++  ++ D+  V  A ++     +    T +   +V    +W+L L+ + ++P ++ 
Sbjct: 110 TGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSI 169

Query: 201 AGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKL 260
                +  L  ++ + + S      +AE+ +   R V  + G++     +        +L
Sbjct: 170 LMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRL 229

Query: 261 GYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQ 320
             K   A  +    T  IA ++ A+V + A    + G    G  FTA  +A++  +   +
Sbjct: 230 AMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAG-DFTAFITAMIALIRPLK 288

Query: 321 SFSNL-GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPD 379
           S +N+     +G AA   L  ++   P   +D T  R ++   G++EF+NVTF YP R D
Sbjct: 289 SLTNVNAPMQRGLAAAESLFTLLDSPPE--KD-TGTRAIERARGDVEFRNVTFRYPGR-D 344

Query: 380 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL 439
                  S+    G+TVA+VG SGSGKST+V+LI RFY+P++G +LLD  D+    L  L
Sbjct: 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404

Query: 440 RDQIGLVNQEPALFATTILENILYGKP-EATMAEVEAAASAANAHSFITLLPNGYSTQVG 498
           R Q+ LV+Q+  LF  TI  NI YG+  +A  AE+E A +AA A  F+  LP G  T +G
Sbjct: 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464

Query: 499 ERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVV 558
           E GV LSGGQ+QR+AIARA+LK+  IL+LDEATSALD  SE +VQ AL+RLM GRTT+V+
Sbjct: 465 ENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVI 524

Query: 559 AHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 602
           AHRLSTI   D + V+  G++VE GTH EL+A+ G YA L   Q
Sbjct: 525 AHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQ 568

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score =  342 bits (879), Expect = e-109
 Identities = 134/235 (57%), Positives = 178/235 (75%), Gaps = 2/235 (0%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +E ++V F YP     V+ +D +L I AG++ ALVG SGSGKS+++ LI RFYD  +G++
Sbjct: 1    VEFKNVTFRYPGDGPPVL-RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHG 1129
            +IDG D+R   L SLR +IGLV Q+  LF  ++ +NIAYG+ GAT  EV EAARAAN H 
Sbjct: 60   LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119

Query: 1130 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 1189
            F+  LP  Y T +GERGV+LSGGQ+QRIAIARA+LK+P IL+LDEATSALD ESE ++Q 
Sbjct: 120  FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179

Query: 1190 ALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 1244
            ALERLM+ RTT ++AHRLSTI   D I V++DG+IVE+G+H EL+++  G Y++L
Sbjct: 180  ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score =  325 bits (836), Expect = e-103
 Identities = 133/238 (55%), Positives = 170/238 (71%), Gaps = 2/238 (0%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IEF+NVTF+Y   P   + +D S   PAGK VA+VG SGSGKST++ L+ RFYD ++G +
Sbjct: 1   IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 484
           L+D  DI+ + L  LR  IG+V Q+  LF  TI  NI YG+P+AT  EV  AA AA  H 
Sbjct: 59  LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118

Query: 485 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 544
            I   P+GY T VGERG++LSGG+KQR+AIARA+LKNP ILLLDEATSALD  +E  +Q 
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178

Query: 545 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 602
           AL  +  GRTT+V+AHRLSTI N D + V++ G++VE GTHEEL+AK G YA + + Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKAQ 236

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score =  323 bits (829), Expect = e-102
 Identities = 118/231 (51%), Positives = 167/231 (72%), Gaps = 2/231 (0%)

Query: 363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 422
           G IEF+NV FSY       + +D +     G+TVA+VG +G+GK+T+++L+ RFYDP  G
Sbjct: 1   GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58

Query: 423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANA 482
            +L+D +DI+ +  + LR  IG+V Q+  LF+ TI+ENI  G+P AT  EV  AA  A A
Sbjct: 59  QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118

Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
           H FI  LPNGY T +GE G  LS G++Q +AIARAML++PKIL+LDEATS +D  +E ++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178

Query: 543 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAG 593
           QEAL++LM GRT++++AHRLSTI+N D + V+  G+++E GTH+EL+AK G
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score =  336 bits (863), Expect = e-102
 Identities = 189/549 (34%), Positives = 303/549 (55%), Gaps = 36/549 (6%)

Query: 67  NGFGKNQTDIHKMTHEVCKYALYFVYLGLIVC--FSSYAEIACWMYTGERQVSTLRKKYL 124
           +GFGK    + K         +  V +GL++    +S+    C  +   + V T+R++  
Sbjct: 54  DGFGKADRSVLKW--------MPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLF 105

Query: 125 EAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSA 184
             ++   V FFD  + TG ++  ++ D+  V  + S  +   +   ++ +   ++ F  +
Sbjct: 106 GHMMGMPVSFFDKQS-TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 164

Query: 185 WRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVG-- 242
           W+L+L+ I + P ++ A  + +     ++   + +       AEQ +   + V  + G  
Sbjct: 165 WQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQE 224

Query: 243 -ESKALNSYSDAI-QNTLKLGYKAGMAKGLGLGCTYGIACM-SWALVF-WYAGVF--IRN 296
            E+K  +  S+ + Q  +K+   + ++  +       I  + S AL F  YA  F  + +
Sbjct: 225 VETKRFDKVSNRMRQQGMKMVSASSISDPI-------IQLIASLALAFVLYAASFPSVMD 277

Query: 297 GVTDGGKAFTAIFSAIVGGMSLGQSFSNLGA-FSKGKAAGYKLMEIIKQKPSIIQDPTNG 355
            +T G    T +FS+++  M   +S +N+ A F +G AA   L  I+  +    Q+   G
Sbjct: 278 TLTAG--TITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLE----QEKDEG 331

Query: 356 RC-LDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIE 414
           +  ++   G+IEF+NVTF+YP + +V   R+ +   PAGKTVA+VG SGSGKST+ +L+ 
Sbjct: 332 KRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLT 390

Query: 415 RFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEA-TMAEV 473
           RFYD + G +LLD  D++   L  LR+Q+ LV+Q   LF  TI  NI Y + E  +  ++
Sbjct: 391 RFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQI 450

Query: 474 EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSA 533
           E AA  A A  FI  + NG  T +GE GV LSGGQ+QRIAIARA+L++  IL+LDEATSA
Sbjct: 451 EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510

Query: 534 LDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAG 593
           LD  SE  +Q ALD L   RT++V+AHRLSTI   D + V++ G++VE GTH EL+A+ G
Sbjct: 511 LDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNG 570

Query: 594 AYASLIRFQ 602
            YA L + Q
Sbjct: 571 VYAQLHKMQ 579

Length = 582

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score =  319 bits (819), Expect = e-100
 Identities = 128/240 (53%), Positives = 174/240 (72%), Gaps = 5/240 (2%)

Query: 1010 IELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            IE  +V FAY P RP   V KD +  I AG+  A+VG SGSGKS+++ L+ RFYD ++G 
Sbjct: 1    IEFENVTFAYDPGRP---VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS 57

Query: 1069 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVH 1128
            ++IDG+DIR + L SLR  IG+V Q+  LF  +I  NI YG+  AT+ EV+EAA+AA +H
Sbjct: 58   ILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIH 117

Query: 1129 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 1188
              +   P+ Y T VGERG++LSGG+KQR+AIARA+LKNP ILLLDEATSALD  +E  +Q
Sbjct: 118  DKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177

Query: 1189 EALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
             AL  + +GRTT+++AHRLSTI   D I V++DGRIVE+G+H EL+++  G Y+ + + Q
Sbjct: 178  AALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWKAQ 236

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score =  326 bits (837), Expect = 4e-97
 Identities = 174/487 (35%), Positives = 265/487 (54%), Gaps = 14/487 (2%)

Query: 122 KYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGF 181
           ++   +L+  + +F+     G+I+  V  +   +++ ++  +   I  L   L  L V F
Sbjct: 232 RFFRHLLRLPLSYFEK-RSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMF 289

Query: 182 VSAWRLALLSIAVIPGIAFAGGLYAYTLTG-LTSKSRESYANAGIIAEQAIAQVRTVYSY 240
           + +W+L L+ +A IP +     L    L    T K  E  A       + I  + TV + 
Sbjct: 290 LYSWKLTLIVLAAIP-LNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKAL 348

Query: 241 VGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVF--IRNGV 298
             E +  + + + +   + +G+K      +       +  +S  L+ W+ G    +   +
Sbjct: 349 AAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWF-GAILVLEGEL 407

Query: 299 TDGG-KAFTAIFSAIVGGMSLGQSFSNLGA-FSKGKAAGYKLMEIIKQKPSIIQDPTNGR 356
           T G   AF  +    +  ++     S L   F + K A  +L +I+   P    D T   
Sbjct: 408 TLGQLVAFNMLAGYFISPIT---RLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIH 464

Query: 357 CLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF 416
            L ++ G IEF+NV+F Y      ++  D S+  P G+ VA+VG SGSGKST++ L+   
Sbjct: 465 -LPKLQGEIEFENVSFRYGPDDPPVL-EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL 522

Query: 417 YDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAA 476
           Y P  G +LLD VD+  + L  LR Q+G V Q+P LF+ +I ENI  G PEAT  E+  A
Sbjct: 523 YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEA 582

Query: 477 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
           A  A AH FI  LP GY T VGE G  LSGGQ+QR+A+ARA+L  PKILLLDEATSALD 
Sbjct: 583 AQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDP 642

Query: 537 GSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYA 596
            +E+I+ + L +++ GRT +++AHRLSTIR+ D + V+ QG++VE G+HEEL+A+ G YA
Sbjct: 643 ETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYA 702

Query: 597 SLIRFQE 603
            L + QE
Sbjct: 703 RLYQQQE 709

Length = 709

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score =  322 bits (828), Expect = 9e-96
 Identities = 170/524 (32%), Positives = 281/524 (53%), Gaps = 16/524 (3%)

Query: 730  FVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLV 789
                 + A L+  +  L++ Y  + +G+ L   +       +LR  + +F  E+ +   +
Sbjct: 196  LAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYF--EKRSVGEI 253

Query: 790  AARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFA 849
             +R+  +   ++  +   I  ++ ++   L    V F+  W+++L++L   PL VL    
Sbjct: 254  ISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLI 312

Query: 850  -----QQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQS 904
                 ++ + K    ++A+  +       E +  I TV A  A+ +  S + + L    +
Sbjct: 313  FQPLLRRKTRKLIE-ESAEQQSFLV----ETIKGIETVKALAAEPRFRSQWDNRLAKQVN 367

Query: 905  QTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVA 964
               +    A IL  I       S  LILW+G  LV +G  T  +++   ++     + + 
Sbjct: 368  IGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPIT 427

Query: 965  ETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPD 1024
                L  +  +   ++  +   LD     + D       + ++GEIE  +V F Y     
Sbjct: 428  RLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPK-LQGEIEFENVSFRYGPDDP 486

Query: 1025 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 1084
             V+ +D +L I  G+  A+VG SGSGKS+++ L+   Y P  G++++DG D+  ++L SL
Sbjct: 487  PVL-EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL 545

Query: 1085 RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGE 1144
            R ++G V Q+P LF+ SI +NIA G   AT+ E++EAA+ A  H F+  LP  Y TPVGE
Sbjct: 546  RRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE 605

Query: 1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVA 1204
             G  LSGGQ+QR+A+ARA+L  P ILLLDEATSALD E+E ++ + L ++++GRT +++A
Sbjct: 606  GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIA 665

Query: 1205 HRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            HRLSTIR  D I V+  G+IVEQGSH EL+++  G Y+RL Q Q
Sbjct: 666  HRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQ 708

Length = 709

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score =  311 bits (800), Expect = 3e-93
 Identities = 130/269 (48%), Positives = 183/269 (68%), Gaps = 4/269 (1%)

Query: 349 IQDPTNGRCLDEVNGNIEFKNVTFSYP-SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKS 407
           ++DP     L  V G +EF +V+FSY  SR  V    D S     G+TVA+VG +G+GKS
Sbjct: 319 VRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGV---EDVSFEAKPGQTVAIVGPTGAGKS 375

Query: 408 TVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPE 467
           T+++L++R +DP +G +L+D  DI+T+    LR  I +V Q+  LF  +I +NI  G+P+
Sbjct: 376 TLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD 435

Query: 468 ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLL 527
           AT  E+ AAA  A AH FI   P+GY T VGERG QLSGG++QR+AIARA+LK+P IL+L
Sbjct: 436 ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILIL 495

Query: 528 DEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEE 587
           DEATSALD  +E+ V+ ALD LM GRTT ++AHRLST+RN D + V   G+VVE+G+ +E
Sbjct: 496 DEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE 555

Query: 588 LIAKAGAYASLIRFQEMVRNRDFANPSTR 616
           L+A+ G +A+L+R Q M++  +       
Sbjct: 556 LVARGGRFAALLRAQGMLQEDERRKQPAA 584

Length = 588

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score =  296 bits (759), Expect = 3e-92
 Identities = 115/229 (50%), Positives = 170/229 (74%), Gaps = 2/229 (0%)

Query: 1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            GEIE  +V+F+Y       V KD N  I+ G++ A+VG +G+GK+++I L+ RFYDP  G
Sbjct: 1    GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58

Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANV 1127
            +++IDG DIR ++ KSLR  IG+V Q+  LF+ +I +NI  G+  AT+ EV+EAA+ A  
Sbjct: 59   QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118

Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
            H F+  LPN Y T +GE G  LS G++Q +AIARA+L++P IL+LDEATS +D E+E ++
Sbjct: 119  HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178

Query: 1188 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236
            QEALE+LM+GRT++++AHRLSTI+  D I V+ DG+I+E+G+H EL+++
Sbjct: 179  QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score =  299 bits (769), Expect = 6e-89
 Identities = 122/265 (46%), Positives = 175/265 (66%), Gaps = 3/265 (1%)

Query: 984  FSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQAL 1043
            F  ++ +     D P A  +  ++G +E   V F+Y +    V  +D +   + GQ+ A+
Sbjct: 309  FFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGV--EDVSFEAKPGQTVAI 366

Query: 1044 VGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF 1103
            VG +G+GKS++I L++R +DP +G+++IDG DIR +   SLR  I +V Q+  LF  SI 
Sbjct: 367  VGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIE 426

Query: 1104 DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 1163
            DNI  G+  AT+ E+  AA  A  H F+   P+ Y T VGERG QLSGG++QR+AIARA+
Sbjct: 427  DNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARAL 486

Query: 1164 LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGR 1223
            LK+P IL+LDEATSALD E+E  ++ AL+ LM+GRTT ++AHRLST+R  D I V  +GR
Sbjct: 487  LKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGR 546

Query: 1224 IVEQGSHSELVSRPDGAYSRLLQLQ 1248
            +VE GS  ELV+R  G ++ LL+ Q
Sbjct: 547  VVESGSFDELVAR-GGRFAALLRAQ 570

Length = 588

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score =  282 bits (724), Expect = 9e-82
 Identities = 157/464 (33%), Positives = 239/464 (51%), Gaps = 54/464 (11%)

Query: 813  QNMTSLLTS-FIVAFI-VEWRVS----LLILGTYPL-LVLANFAQQLSLKGFAGDTAKAH 865
              +T +L   F+V F+ V +  S     +++G+     +L+ F   +  K       ++ 
Sbjct: 255  SALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSA 314

Query: 866  AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALH 925
            A TS +  E V+ I T+ A   + +  + +  +L    +  +  S      F ++     
Sbjct: 315  AATSFLV-ESVTGIETIKATATEPQFQNRWDRQL----AAYVAAS------FRVTNLGNI 363

Query: 926  ASE----------ALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIR 975
            A +          A++LW+G HLV  G         +    +V  N +A  V+  P ++R
Sbjct: 364  AGQAIELIQKLTFAILLWFGAHLVIGG--------ALSPGQLVAFNMLAGRVT-QP-VLR 413

Query: 976  ----------GGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDV 1025
                       G ++  +   L+  T        A P   +RG I   ++ F Y   PD 
Sbjct: 414  LAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPE--LRGAITFENIRFRY--APDS 469

Query: 1026 -VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 1084
              V  + NL I+ G+   +VG SGSGKS++  L++R Y P  G+V++DG D+   +   L
Sbjct: 470  PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL 529

Query: 1085 RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGE 1144
            R ++G+V QE  LF+ SI DNIA    GA    V+ AA+ A  H F+S LP  Y T VGE
Sbjct: 530  RRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGE 589

Query: 1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVA 1204
            +G  LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE ++   +  + RGRT +++A
Sbjct: 590  KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIA 649

Query: 1205 HRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            HRLST+R  D I V++ G+I E G H EL++   G Y+RL Q Q
Sbjct: 650  HRLSTVRACDRIIVLEKGQIAESGRHEELLALQ-GLYARLWQQQ 692

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score =  292 bits (748), Expect = 5e-81
 Identities = 242/931 (25%), Positives = 422/931 (45%), Gaps = 167/931 (17%)

Query: 471  AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 530
            +EV   +     H F++ LP+ Y T VG    +LSGGQKQRI+IARA+++NPKIL+LDEA
Sbjct: 547  SEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEA 606

Query: 531  TSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQ---------- 578
            TS+LD  SE +VQ+ ++ L     R T+++AHRLSTIR  +T+ V+   +          
Sbjct: 607  TSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDII 666

Query: 579  -------------------------------------VVETGTHEELIA-KAGAYASLIR 600
                                                 ++E GTH+ L+  K G Y ++I 
Sbjct: 667  GEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMIN 726

Query: 601  FQEMVRNRDFANPSTRRS--RSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVS 658
             Q++   +   N + + S  +S+    S         +G+ ++ + S S   + +   +S
Sbjct: 727  NQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHENESAS---NKKSCKMS 783

Query: 659  NAETDRKNPAPDGYFLRLLKLNAPEWPYSI---------------MGAIGSVLSGFIGPT 703
            +      N      FLR L    P+ P ++               + A+  +++G + P 
Sbjct: 784  DENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVAGGLYPV 843

Query: 704  FAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRV 763
            FA++ A  +   +  + A++E  + ++    +   +   ++  +++Y+ +++GE +   +
Sbjct: 844  FALLYAKYVSTLF--DFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTM 901

Query: 764  RRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFI 823
            +R +   IL  E+ +FD+++H   L++A +  D   +K+ + + I +    +   L S +
Sbjct: 902  KRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMV 961

Query: 824  VAFIVEWRVSLLILGTYPLLVLANFAQQLSLKG---------------FAGDTAKAHAKT 868
            ++F     V+ ++ GTY  + +  FA +  L                 FA ++     K 
Sbjct: 962  MSFYFCPIVAAVLTGTY-FIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKD 1020

Query: 869  -SMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHAS 927
             S +  E   N+ TV  +  ++   +L    +        R++L   +L+G SQ A    
Sbjct: 1021 PSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFI 1080

Query: 928  EALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTL 987
             +   W+G  L+ +G       +K     + T +   + +SL  +      S    +  +
Sbjct: 1081 NSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLI 1140

Query: 988  DRSTRID-------------------------------PDDP---------DAEPVETIR 1007
             R + ID                               P+ P         D++    I 
Sbjct: 1141 IRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIV 1200

Query: 1008 GE----------IELR--------HVDFAYPSRPDVVVFKDF------NLRIRAGQSQAL 1043
            GE          + +R        H+ F      D+   +D+      N+ ++     +L
Sbjct: 1201 GETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260

Query: 1044 VGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF 1103
                GSG+ S +          +GK+++DG DI   NLK LR    +V QEP LF  SI+
Sbjct: 1261 TKEGGSGEDSTVF-------KNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIY 1313

Query: 1104 DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 1163
            +NI +GKE AT  +V  A + A +  F+ +LPN Y T VG  G  LSGGQKQRIAIARA+
Sbjct: 1314 ENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARAL 1373

Query: 1164 LKNPAILLLDEATSALDAESECVLQEALERL--MRGRTTVLVAHRLSTIRGVDCIGVVQD 1221
            L+ P ILLLDEATS+LD+ SE ++++ +  +     +T + +AHR+++I+  D I V  +
Sbjct: 1374 LREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433

Query: 1222 ----GRIVE-QGSHSELVSRPDGAYSRLLQL 1247
                G  V+  G+H EL+S  DG Y + ++L
Sbjct: 1434 PDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464

Length = 1466

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score =  274 bits (702), Expect = 8e-81
 Identities = 135/287 (47%), Positives = 180/287 (62%), Gaps = 17/287 (5%)

Query: 318 LGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDP-----TNGRCLDEVNGNIEFKNVTF 372
           LG S+  +    +      K+ +++  +  +   P        R      G + F NV+F
Sbjct: 219 LGFSYREIR---QALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRL-----GAVAFINVSF 270

Query: 373 SY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI 431
           +Y P RP   I    S   P GKTVA+VG SG+GKST++ L+ RFYD N+G + +D  DI
Sbjct: 271 AYDPRRP---ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDI 327

Query: 432 KTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPN 491
           + +  + LR  IG+V Q+  LF  TI  NI YG+P+AT  EV AAA AA  H FI  LP 
Sbjct: 328 RDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPE 387

Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV 551
           GY T VGERG++LSGG+KQR+AIAR +LKNP IL+LDEATSALD  +E  +Q AL  +  
Sbjct: 388 GYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA 447

Query: 552 GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASL 598
           GRTT+V+AHRLSTI + D + V+  G++VE GTHEEL+A  G YA +
Sbjct: 448 GRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494

Length = 497

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score =  264 bits (676), Expect = 9e-81
 Identities = 115/239 (48%), Positives = 158/239 (66%), Gaps = 3/239 (1%)

Query: 365 IEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           I F++V F Y  +PD  +I  + S+    G+ V +VG SGSGKST+  LI+RFY P  G 
Sbjct: 1   ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58

Query: 424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAH 483
           VL+D  D+      WLR Q+G+V QE  LF  +I +NI    P  +M  V  AA  A AH
Sbjct: 59  VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
            FI+ LP GY T VGE+G  LSGGQ+QRIAIARA++ NP+IL+ DEATSALD  SE  + 
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178

Query: 544 EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 602
             +  +  GRT +++AHRLST++N D + V+++G++VE G+H+EL+A+ G YA L + Q
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQLQ 237

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score =  277 bits (710), Expect = 8e-80
 Identities = 116/246 (47%), Positives = 163/246 (66%), Gaps = 3/246 (1%)

Query: 358 LDEVNGNIEFKNVTFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF 416
           L E+ G I F+N+ F Y P  P+V+   + ++    G+ + +VG SGSGKST+  L++R 
Sbjct: 449 LPELRGAITFENIRFRYAPDSPEVL--SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL 506

Query: 417 YDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAA 476
           Y P  G VL+D VD+      WLR Q+G+V QE  LF+ +I +NI    P A    V  A
Sbjct: 507 YTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHA 566

Query: 477 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
           A  A AH FI+ LP GY+T+VGE+G  LSGGQ+QRIAIARA++ NP+IL+ DEATSALD 
Sbjct: 567 AKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDY 626

Query: 537 GSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYA 596
            SE+++   +  +  GRT +++AHRLST+R  D + V+++GQ+ E+G HEEL+A  G YA
Sbjct: 627 ESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYA 686

Query: 597 SLIRFQ 602
            L + Q
Sbjct: 687 RLWQQQ 692

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score =  261 bits (668), Expect = 1e-79
 Identities = 119/240 (49%), Positives = 160/240 (66%), Gaps = 4/240 (1%)

Query: 1010 IELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            I   HV F Y  +PD  V+  + +LRI+ G+   +VG SGSGKS++  LI+RFY P  G+
Sbjct: 1    ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58

Query: 1069 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVH 1128
            V++DG D+   +   LR ++G+V QE  LF  SI DNIA    G +   V+EAA+ A  H
Sbjct: 59   VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118

Query: 1129 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 1188
             F+S LP  Y T VGE+G  LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE  + 
Sbjct: 119  DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178

Query: 1189 EALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
              +  +  GRT +++AHRLST++  D I V++ GRIVEQGSH EL++  +G Y+ L QLQ
Sbjct: 179  RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQLQ 237

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score =  260 bits (665), Expect = 2e-79
 Identities = 113/221 (51%), Positives = 156/221 (70%)

Query: 359 DEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD 418
           D + G ++F+NVTF+YP+RPD ++ +D S     G+  A+VG SGSGKSTVV+L+E FY 
Sbjct: 6   DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65

Query: 419 PNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAAS 478
           P  G VLLD   I   + ++L  ++ LV QEP LFA ++ +NI YG    +   V+ AA 
Sbjct: 66  PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQ 125

Query: 479 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 538
            A+AHSFI+ L +GY T+VGE+G QLSGGQKQR+AIARA+++NP++L+LDEATSALDA S
Sbjct: 126 KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185

Query: 539 ESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQV 579
           E  VQ+AL      RT +V+AHRLST+   D + V+  G++
Sbjct: 186 EQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score =  269 bits (691), Expect = 2e-78
 Identities = 124/275 (45%), Positives = 182/275 (66%), Gaps = 6/275 (2%)

Query: 975  RGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLR 1034
            RG  +  ++F+ LD     D      E     +G+IE R+V F YP + +V   ++ N +
Sbjct: 310  RGMAACQTLFAILDLEQEKDEGKRVIERA---KGDIEFRNVTFTYPGK-EVPALRNINFK 365

Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 1094
            I AG++ ALVG SGSGKS++  L+ RFYD   G++++DG D+R   L SLR ++ LV Q 
Sbjct: 366  IPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQN 425

Query: 1095 PALFAASIFDNIAYGKEGA-TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 1153
              LF  +I +NIAY +    +  ++ EAAR A    F++ + N   T +GE GV LSGGQ
Sbjct: 426  VHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQ 485

Query: 1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGV 1213
            +QRIAIARA+L++  IL+LDEATSALD ESE  +Q AL+ L + RT++++AHRLSTI   
Sbjct: 486  RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKA 545

Query: 1214 DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            D I VV+DG IVE+G+H+EL+++ +G Y++L ++Q
Sbjct: 546  DEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579

Length = 582

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score =  256 bits (655), Expect = 6e-78
 Identities = 115/220 (52%), Positives = 156/220 (70%)

Query: 1005 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP 1064
             ++G ++ ++V FAYP+RPD +V +D +  +  G+  ALVG SGSGKS+V+AL+E FY P
Sbjct: 7    HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP 66

Query: 1065 TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARA 1124
              G+V++DGK I +   K L  K+ LV QEP LFA S+ DNIAYG +  +   V EAA+ 
Sbjct: 67   QGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQK 126

Query: 1125 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 1184
            A+ H F+S L + Y T VGE+G QLSGGQKQR+AIARA+++NP +L+LDEATSALDAESE
Sbjct: 127  AHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186

Query: 1185 CVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 1224
              +Q+AL      RT +++AHRLST+   D I V+  GRI
Sbjct: 187  QQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score =  251 bits (643), Expect = 5e-77
 Identities = 96/214 (44%), Positives = 128/214 (59%), Gaps = 43/214 (20%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IEFKNV+FSYP RP  +  +D S+    G+ VA+VG SGSGKST++ L+ R YDP +G +
Sbjct: 1   IEFKNVSFSYPGRPKPV-LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 484
           L+D VD++ L L  LR  I  V Q+P LF+ TI ENI                       
Sbjct: 60  LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96

Query: 485 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 544
                              LSGGQ+QRIAIARA+L++P IL+LDEATSALD  +E+++ E
Sbjct: 97  -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137

Query: 545 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQ 578
           AL  L  G+T +V+AHRLSTIR+ D + V+  G+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score =  261 bits (670), Expect = 2e-76
 Identities = 122/250 (48%), Positives = 168/250 (67%), Gaps = 4/250 (1%)

Query: 996  DDPDAEPVETIR-GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV 1054
            D PDA P+  +R G +   +V FAY   P   +    +  I  G++ A+VG SG+GKS++
Sbjct: 248  DAPDAPPLWPVRLGAVAFINVSFAY--DPRRPILNGISFTIPLGKTVAIVGESGAGKSTI 305

Query: 1055 IALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGAT 1114
            + L+ RFYD  +G + IDG+DIR +  +SLR  IG+V Q+  LF  +I  NI YG+  AT
Sbjct: 306  LRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDAT 365

Query: 1115 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 1174
              EV  AA AA +H F+ +LP  Y T VGERG++LSGG+KQR+AIAR +LKNP IL+LDE
Sbjct: 366  AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDE 425

Query: 1175 ATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELV 1234
            ATSALD  +E  +Q AL  +  GRTT+++AHRLSTI   D I V+ +GRIVE+G+H EL+
Sbjct: 426  ATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELL 485

Query: 1235 SRPDGAYSRL 1244
            +   G Y+ +
Sbjct: 486  AA-GGLYAEM 494

Length = 497

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score =  263 bits (674), Expect = 4e-76
 Identities = 160/461 (34%), Positives = 246/461 (53%), Gaps = 26/461 (5%)

Query: 169 YLSTFLAGLV---VGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRES----YA 221
           +L+TF+A  +     F   WRL++  + ++ GI +   L A  +   T   + +    Y 
Sbjct: 137 HLATFVALFLLIPTAFAMDWRLSI--VLMVLGILYI--LIAKLVMQRTKNGQAAVEHHYH 192

Query: 222 NAGIIAEQAIAQVRTVYSY---VGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGI 278
           N       +I+ V  V+SY     E+ AL  ++    N L   Y       L  G     
Sbjct: 193 NVFKHVSDSISNVSVVHSYNRIEAETSALKQFT---NNLLSAQYPVLDWWALASGLNRMA 249

Query: 279 ACMSWALVFWYAGVFIRNGVTDGGK--AFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGY 336
           + +S   +     V +  G    G+  AF    + ++G +     F      ++ K   +
Sbjct: 250 STISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDF 309

Query: 337 KLME-IIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKT 395
             +E  + Q+    ++P +   L  V G +EF+++TF + +    +   D S    AG+T
Sbjct: 310 FDLEDSVFQR----EEPADAPELPNVKGAVEFRHITFEFANSSQGV--FDVSFEAKAGQT 363

Query: 396 VAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT 455
           VA+VG +G+GK+T+++L++R YDP  G +L+D +DI T+    LR  I  V Q+  LF  
Sbjct: 364 VAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNR 423

Query: 456 TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 515
           +I ENI  G+  AT  EV  AA AA AH FI    NGY T VGERG +LSGG++QR+AIA
Sbjct: 424 SIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIA 483

Query: 516 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQ 575
           RA+LKN  IL+LDEATSALD  +E+ V+ A+D L   RTT ++AHRLST+RN D V  + 
Sbjct: 484 RAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLD 543

Query: 576 QGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTR 616
           QG+++E G+ +ELI K G +  L+R   ++ N+    P  +
Sbjct: 544 QGRLIEKGSFQELIQKDGRFYKLLRRSGLLTNQPATKPLRK 584

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score =  244 bits (625), Expect = 1e-74
 Identities = 97/214 (45%), Positives = 133/214 (62%), Gaps = 43/214 (20%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE ++V F+YP RP   V KD +L I+ G+  A+VG SGSGKS+++ L+ R YDPT+G++
Sbjct: 1    IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHG 1129
            +IDG D+R L+L+SLR  I  V Q+P LF+ +I +NI                       
Sbjct: 60   LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96

Query: 1130 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 1189
                               LSGGQ+QRIAIARA+L++P IL+LDEATSALD E+E ++ E
Sbjct: 97   -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137

Query: 1190 ALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGR 1223
            AL  L +G+T +++AHRLSTIR  D I V+ DGR
Sbjct: 138  ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score =  250 bits (639), Expect = 2e-71
 Identities = 162/453 (35%), Positives = 253/453 (55%), Gaps = 27/453 (5%)

Query: 809  SVILQNMTSLLTSFI-------VAFIVEWRVSLLILGTYPLLVL-ANFAQQLSLKGFAGD 860
             + L+ M   L +F+        AF ++WR+S++++    L +L A    Q +  G A  
Sbjct: 128  GLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAV 187

Query: 861  TAKAHAKTSMIAGEGVSNIRTVAAFN---AQNKILSLFCHELRVPQSQTLRRSLTAGILF 917
                H     ++ + +SN+  V ++N   A+   L  F + L   Q   L     A    
Sbjct: 188  EHHYHNVFKHVS-DSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALAS--- 243

Query: 918  GISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFV----VLVVTANSVAETVSLAPEI 973
            G+++ A   S   IL  G  LV KG  +  +VI  F+    +L+   + ++  ++   E 
Sbjct: 244  GLNRMASTISMMCILVIGTVLVIKGELSVGEVI-AFIGFANLLIGRLDQMSGFITQIFEA 302

Query: 974  IRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNL 1033
                E     F  L+ S     +  DA  +  ++G +E RH+ F + +    V   D + 
Sbjct: 303  RAKLED----FFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGV--FDVSF 356

Query: 1034 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQ 1093
              +AGQ+ A+VG +G+GK+++I L++R YDPT G+++IDG DI  +  +SLR  I  V Q
Sbjct: 357  EAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQ 416

Query: 1094 EPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 1153
            +  LF  SI +NI  G+EGAT+ EV EAA+AA  H F+    N Y T VGERG +LSGG+
Sbjct: 417  DAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGE 476

Query: 1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGV 1213
            +QR+AIARA+LKN  IL+LDEATSALD E+E  ++ A++ L + RTT ++AHRLST+R  
Sbjct: 477  RQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNA 536

Query: 1214 DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 1246
            D +  +  GR++E+GS  EL+ + DG + +LL+
Sbjct: 537  DLVLFLDQGRLIEKGSFQELIQK-DGRFYKLLR 568

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score =  252 bits (647), Expect = 2e-71
 Identities = 138/421 (32%), Positives = 223/421 (52%), Gaps = 15/421 (3%)

Query: 822  FIVA-FIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIR 880
            F++   I+   +  + L   PL++L     Q  L   A ++ +  A+ + +  E +S + 
Sbjct: 276  FLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLE 335

Query: 881  TVAAFNAQNKILSLF--CHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHL 938
            T+ A NA+ +    +       + +S    R L+  +    +QF        I+  GV+L
Sbjct: 336  TIKALNAEGRFQRRWEQTVAA-LARSGLKSRFLSN-LATNFAQFIQQLVSVAIVVVGVYL 393

Query: 939  VGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDR--STRIDPD 996
            +  G  T   +I   V+L  +  ++A    LA  + R  ++  +   +LD      ++  
Sbjct: 394  ISDGELTMGGLIAC-VML--SGRALAPLGQLAGLLTRYQQA-KTALQSLDELMQLPVE-R 448

Query: 997  DPDAEPV--ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV 1054
                  +    ++GEIE R+V FAYP +    +  + +L IR G+  A++G  GSGKS++
Sbjct: 449  PEGTRFLHRPRLQGEIEFRNVSFAYPGQETPAL-DNVSLTIRPGEKVAIIGRIGSGKSTL 507

Query: 1055 IALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGAT 1114
            + L+   Y PT G V++DG DIR+++   LR  IG V Q+P LF  ++ DNIA G   A 
Sbjct: 508  LKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYAD 567

Query: 1115 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 1174
            + E++ AA  A V  FV   P+     +GERG  LSGGQ+Q +A+ARA+L++P ILLLDE
Sbjct: 568  DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDE 627

Query: 1175 ATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELV 1234
             TSA+D  SE   ++ L+R + G+T VLV HR S +  VD I V+ +GRIV  G   +++
Sbjct: 628  PTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVL 687

Query: 1235 S 1235
             
Sbjct: 688  E 688

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score =  235 bits (603), Expect = 6e-71
 Identities = 98/221 (44%), Positives = 140/221 (63%), Gaps = 1/221 (0%)

Query: 1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            G IE R+V F+YP++    +  + +L IRAG+  A++G  GSGKS+++ L+   Y PT+G
Sbjct: 1    GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59

Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANV 1127
             V++DG DIR+L+   LR  IG V Q+  LF  ++ DNI  G   A +  ++ AA  A V
Sbjct: 60   SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119

Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
              FV+  PN     +GERG  LSGGQ+Q +A+ARA+L +P ILLLDE TSA+D  SE  L
Sbjct: 120  TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179

Query: 1188 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 1228
            +E L +L+  +T +++ HR S +  VD I V+  GRIV  G
Sbjct: 180  KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score =  232 bits (594), Expect = 1e-69
 Identities = 96/221 (43%), Positives = 136/221 (61%), Gaps = 1/221 (0%)

Query: 363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 422
           G IEF+NV+FSYP++    +  + S+   AG+ VA++G  GSGKST++ L+   Y P +G
Sbjct: 1   GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59

Query: 423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANA 482
            VLLD  DI+ L    LR  IG V Q+  LF  T+ +NI  G P A    +  AA  A  
Sbjct: 60  SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119

Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
             F+   PNG   Q+GERG  LSGGQ+Q +A+ARA+L +P ILLLDE TSA+D  SE  +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179

Query: 543 QEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETG 583
           +E L +L+  +T +++ HR S +  VD + V+  G++V  G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score =  245 bits (627), Expect = 1e-68
 Identities = 140/502 (27%), Positives = 247/502 (49%), Gaps = 46/502 (9%)

Query: 767  MLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAF 826
             L  ILR  V +F +    +  +A+R+      V   ++ +++    +   L+   ++  
Sbjct: 233  FLWHILRLPVRFFAQRH--AGDIASRVQL-NDQVAEFLSGQLATTALDAVMLVFYALLML 289

Query: 827  IVEWRVSLLILGTYPLLVLANFA----QQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTV 882
            + +  ++L+ +    + VLA       +  + +    D  K       +A  G+ +I T+
Sbjct: 290  LYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTG----VAISGLQSIETL 345

Query: 883  AAFNAQNKILSLFCHELRVPQSQTL----RRSLTAGILFGISQFALHASEALILWYGVHL 938
             A   ++   S +       Q++ L       +   IL  +       + ALIL  G   
Sbjct: 346  KASGLESDFFSRWAGY----QAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLR 401

Query: 939  VGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEI--IRGGESVGSVFSTLDR-----ST 991
            V +G  T   ++    ++      V   V     +  + G          L+R       
Sbjct: 402  VMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGD---------LNRLDDVLRN 452

Query: 992  RIDPDDPD-------AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALV 1044
             +DP   +       +EP   + G +ELR++ F Y S  +  + ++F+L ++ GQ  ALV
Sbjct: 453  PVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALV 511

Query: 1045 GASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 1104
            G SGSGKS++  L+   Y P +G+++ DG     +  + L   + +V Q+  LF  ++ D
Sbjct: 512  GGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRD 571

Query: 1105 NIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 1164
            N+        +A++V A + A +H  +++ P  Y   + E G  LSGGQ+QR+ IARA++
Sbjct: 572  NLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALV 631

Query: 1165 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 1224
            +NP+IL+LDEATSALD E+E ++ + L R  RG T ++VAHRLSTIR  D I V++ G++
Sbjct: 632  RNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKV 689

Query: 1225 VEQGSHSELVSRPDGAYSRLLQ 1246
            V++G+H EL +   GAY+RL++
Sbjct: 690  VQRGTHEELWAVG-GAYARLIR 710

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score =  247 bits (633), Expect = 1e-66
 Identities = 244/930 (26%), Positives = 422/930 (45%), Gaps = 103/930 (11%)

Query: 365  IEFKNVTFSYP-SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
            I   N TF++    P  +    FSI  P G  VAVVG  G GKS+++S +    D   GH
Sbjct: 637  ITVHNATFTWARDLPPTLNGITFSI--PEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 694

Query: 424  VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGK---PEATMAEVEAAASAA 480
            V +             +  +  V Q+  +   ++ ENIL+GK    +     +EA A   
Sbjct: 695  VHM-------------KGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLP 741

Query: 481  NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
            +    + +LP+G  T++GE+GV LSGGQKQR+++ARA+  N  I L D+  SA+DA    
Sbjct: 742  D----LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 797

Query: 541  IVQEAL---DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYAS 597
             + E +   + ++  +T ++V H +S +  VD + V+  G++ E G+++EL+ + GA+A 
Sbjct: 798  HIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAE 857

Query: 598  LIRF-----QEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGAD- 651
             +R      Q+      +    +   +  +L  +    +  +     R LS S S   D 
Sbjct: 858  FLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQ 917

Query: 652  ----GRIEMVSNAETDRKNPA---PDGYFLRLLKLNAPEWPYSIMGAIGSVLSG-----F 699
                G    +  AE   +       D      ++L+   W Y  M AIG  ++      F
Sbjct: 918  SRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSV-YWDY--MKAIGLFITFLSIFLF 974

Query: 700  IGPTFAIVMACMIEVFYYRNPA--SMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGE 757
            +    + + +      +  +P     +  T   + +Y   G+    A        SI G 
Sbjct: 975  VCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGI 1034

Query: 758  NLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTS 817
              +  + + +L   LR+ + +F+     S  +  R + +   V S I   I + + ++ +
Sbjct: 1035 QASRVLHQDLLHNKLRSPMSFFERTP--SGNLVNRFSKELDTVDSMIPPVIKMFMGSLFN 1092

Query: 818  LLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQL---------SLKGFAGDTAKAHAKT 868
            ++ + IV  +     +++I    PL +L  F Q+           L+  +     +H   
Sbjct: 1093 VIGALIVILLATPIAAVIIP---PLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNE 1149

Query: 869  SMIAGEGVSNIRTVAAFNAQNKILSLFCH--ELRVPQSQ-------TLRRSLTAGILFGI 919
            +++   GVS IR   AF  Q +    F H  +L+V ++Q          R L   +    
Sbjct: 1150 TLL---GVSVIR---AFEEQER----FIHQSDLKVDENQKAYYPSIVANRWLAVRLECVG 1199

Query: 920  SQFALHASEALILWYGVH-----LVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEII 974
            +   L A  AL      H     LVG  VS +S  +  ++  +V  +S  ET  +A E +
Sbjct: 1200 NCIVLFA--ALFAVISRHSLSAGLVGLSVS-YSLQVTFYLNWLVRMSSEMETNIVAVERL 1256

Query: 975  RGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDV-VVFKDFNL 1033
            +             + T      P   P    RG +E R+    Y  R D+ +V +  N+
Sbjct: 1257 KEYSETEKEAPWQIQETA----PPSGWPP---RGRVEFRNYCLRY--REDLDLVLRHINV 1307

Query: 1034 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQ 1093
             I  G+   +VG +G+GKSS+   + R  +   G+++IDG +I ++ L  LR KI ++ Q
Sbjct: 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ 1367

Query: 1094 EPALFAASIFDNI-AYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 1152
            +P LF+ S+  N+  + +   ++ EV  A   A++  FVSALP+       E G  LS G
Sbjct: 1368 DPVLFSGSLRMNLDPFSQ--YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVG 1425

Query: 1153 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG 1212
            Q+Q + +ARA+L+   IL+LDEAT+A+D E++ ++Q  +       T + +AHRL+TI  
Sbjct: 1426 QRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD 1485

Query: 1213 VDCIGVVQDGRIVEQGSHSELVSRPDGAYS 1242
               + V+  G + E G+ S L+ +    YS
Sbjct: 1486 YTRVIVLDKGEVAEFGAPSNLLQQRGIFYS 1515

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score =  236 bits (605), Expect = 8e-66
 Identities = 144/432 (33%), Positives = 221/432 (51%), Gaps = 27/432 (6%)

Query: 172 TFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKS-RESYANAGIIAEQA 230
             L  LV+  +    L  + +  IP I   G L    L+ L  +S RES     ++ E +
Sbjct: 273 ALLFLLVIAIIGGP-LVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVE-S 330

Query: 231 IAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACM----SWALV 286
           ++ + T+ +   E +    +   +    + G K+   + L    T     +    S A+V
Sbjct: 331 LSGLETIKALNAEGRFQRRWEQTVAALARSGLKS---RFLSNLATNFAQFIQQLVSVAIV 387

Query: 287 FWYAGVF-IRNG-VTDGGKAFTAIFSAIVGG---MSLGQSFSNLGAFSKGKAAGYKLMEI 341
               GV+ I +G +T GG     I   ++ G     LGQ    L  + + K A   L E+
Sbjct: 388 VV--GVYLISDGELTMGG----LIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDEL 441

Query: 342 IKQKPSIIQDPTNGRCLD--EVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVV 399
           + Q P  ++ P   R L    + G IEF+NV+F+YP +    +  + S+    G+ VA++
Sbjct: 442 M-QLP--VERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPAL-DNVSLTIRPGEKVAII 497

Query: 400 GGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILE 459
           G  GSGKST++ L+   Y P  G VLLD VDI+ +    LR  IG V Q+P LF  T+ +
Sbjct: 498 GRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRD 557

Query: 460 NILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 519
           NI  G P A   E+  AA  A    F+   P+G   Q+GERG  LSGGQ+Q +A+ARA+L
Sbjct: 558 NIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL 617

Query: 520 KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQV 579
           ++P ILLLDE TSA+D  SE   ++ L R + G+T V+V HR S +  VD + V+  G++
Sbjct: 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRI 677

Query: 580 VETGTHEELIAK 591
           V  G  ++++  
Sbjct: 678 VADGPKDQVLEA 689

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score =  233 bits (596), Expect = 2e-64
 Identities = 107/239 (44%), Positives = 152/239 (63%), Gaps = 5/239 (2%)

Query: 363 GNIEFKNVTFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 421
           G +E +N+TF Y P  P +I   +FS+    G+ VA+VGGSGSGKST+  L+   Y P +
Sbjct: 476 GYVELRNITFGYSPLEPPLI--ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533

Query: 422 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAAN 481
           G +L D +  + +    L + + +V+Q+  LF  T+ +N+    P    A++  A   A 
Sbjct: 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAA 593

Query: 482 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 541
            H  IT  P GY  ++ E G  LSGGQ+QR+ IARA+++NP IL+LDEATSALD  +E I
Sbjct: 594 IHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKI 653

Query: 542 VQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 600
           + + L R   G T ++VAHRLSTIR+ D + V+++G+VV+ GTHEEL A  GAYA LIR
Sbjct: 654 IDDNLRRR--GCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLIR 710

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score =  227 bits (582), Expect = 3e-64
 Identities = 149/555 (26%), Positives = 234/555 (42%), Gaps = 58/555 (10%)

Query: 692  IGSVLSGFIGPTFAIVMACM----IEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLI 747
                L G +G    I  A +    ++          E        + +   L A++ +L 
Sbjct: 6    ALLALLGVLGALLIIAQAWLLARVVDGLISAGEPLAELLP-ALGALALVLLLRALLGWL- 63

Query: 748  QHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADR 807
            Q    +     + +++R  +L A+      W    +   S   A LA +  +       R
Sbjct: 64   QERAAARAAAAVKSQLRERLLEAVAALGPRW---LQGRPSGELATLALEGVEALDGYFAR 120

Query: 808  ISVILQNMTSL-LTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHA 866
                L     + L      F  +W   L++L T PL+        L          K  A
Sbjct: 121  YLPQLVLAVIVPLAILAAVFPQDWISGLILLLTAPLIP---IFMILIGWAAQAAARKQWA 177

Query: 867  KTSMIAG------EGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRS-LTAGILFGI 919
              S ++G       G+  ++      AQ   +     E R    + LR + L++ +L   
Sbjct: 178  ALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIRRSSEEYRERTMRVLRIAFLSSAVL--- 234

Query: 920  SQFALHASEALILWY-GVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEI---IR 975
             +     S AL+  Y G  L+   +   +       VL+           LAPE    +R
Sbjct: 235  -ELFATLSVALVAVYIGFRLLAGDLDLATG----LFVLL-----------LAPEFYLPLR 278

Query: 976  -----------GGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPD 1024
                       G  +  ++F+ LD + R                 +E   V  AYP R  
Sbjct: 279  QLGAQYHARADGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS--LEFSGVSVAYPGRRP 336

Query: 1025 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 1084
             +  +  +  +  G+  ALVG SG+GKS+++ L+  F DPT G + ++G  +   +  S 
Sbjct: 337  AL--RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394

Query: 1085 RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGE 1144
            R +I  V Q P LFA +I +NI   +  A++AE+ EA   A +  FV+ALP    TP+GE
Sbjct: 395  RDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGE 454

Query: 1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVA 1204
             G  LSGGQ QR+A+ARA L++  +LLLDE T+ LDAE+E  + EAL  L +GRT +LV 
Sbjct: 455  GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVT 514

Query: 1205 HRLSTIRGVDCIGVV 1219
            HRL+     D I V+
Sbjct: 515  HRLALAALADRIVVL 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  227 bits (580), Expect = 9e-64
 Identities = 106/273 (38%), Positives = 158/273 (57%), Gaps = 3/273 (1%)

Query: 331 GKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFF 390
           G+AA  KL  +++   +           +E    I  +N++F YP     +   D ++  
Sbjct: 287 GEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPAL--SDLNLTI 344

Query: 391 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEP 450
            AG+  A+VG SG+GKST+++L+  F  P  G + ++ +D++ L     R QI  V+Q P
Sbjct: 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404

Query: 451 ALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 510
            LFA TI ENIL  +P+A+  E+ AA   A    F+   P+G  T +GE G  LSGGQ Q
Sbjct: 405 YLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQ 463

Query: 511 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDT 570
           R+A+ARA+L    +LLLDE T+ LDA +E I+ +AL  L   +T +V+ HRL    + D 
Sbjct: 464 RLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADR 523

Query: 571 VAVIQQGQVVETGTHEELIAKAGAYASLIRFQE 603
           + V+  G++VE GTHEEL  K G YA+L++ QE
Sbjct: 524 IVVLDNGRLVEQGTHEELSEKQGLYANLLKQQE 556

Length = 559

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  226 bits (579), Expect = 1e-63
 Identities = 105/267 (39%), Positives = 158/267 (59%), Gaps = 4/267 (1%)

Query: 982  SVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQ 1041
             +F+ L+           AE       EI L ++ F YP         D NL I+AGQ  
Sbjct: 293  KLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQLT 350

Query: 1042 ALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAAS 1101
            ALVGASG+GKS+++ L+  F  PT G++ ++G D+R L+ ++ R +I  V Q P LFA +
Sbjct: 351  ALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGT 410

Query: 1102 IFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161
            I +NI   +  A++ E++ A   A +  FV   P+   T +GE G  LSGGQ QR+A+AR
Sbjct: 411  IRENILLARPDASDEEIIAALDQAGLLEFV-PKPDGLDTVIGEGGAGLSGGQAQRLALAR 469

Query: 1162 AVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 1221
            A+L   ++LLLDE T+ LDAE+E ++ +AL+ L + +T +++ HRL      D I V+ +
Sbjct: 470  ALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDN 529

Query: 1222 GRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            GR+VEQG+H EL  +  G Y+ LL+ Q
Sbjct: 530  GRLVEQGTHEELSEK-QGLYANLLKQQ 555

Length = 559

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score =  228 bits (584), Expect = 4e-63
 Identities = 147/448 (32%), Positives = 222/448 (49%), Gaps = 51/448 (11%)

Query: 177 LVVGFVSAWRLALLSIAV----IPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQ--- 229
           L + F  +W+LAL+++A+    I      G L          K R     +G I+     
Sbjct: 267 LGLMFYYSWKLALVAVALALVAIAVTLVLGLL-------QVRKERRLLELSGKISGLTVQ 319

Query: 230 ----------AIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIA 279
                     A A+ R    +         +S       KL   A   + L       + 
Sbjct: 320 LINGISKLRVAGAENRAFARWAKL------FSRQR----KLELSAQRIENLLTVFNAVLP 369

Query: 280 CMSWALVFWYAGVFIRNGVTDGGK--AFTAIFSAIVGGM-SLGQSFSNLGAFSKGKAAGY 336
            ++ A +F  A   +       G   AF   F +  G +  L  +  ++ A        +
Sbjct: 370 VLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAV----IPLW 425

Query: 337 KLME-IIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPD-VIIFRDFSIFFPAGK 394
           +  + I++  P + +  T+     +++G IE   VTF Y  RPD  +I  D S+    G+
Sbjct: 426 ERAKPILEALPEVDEAKTDP---GKLSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGE 480

Query: 395 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA 454
            VA+VG SGSGKST++ L+  F  P +G V  D  D+  L ++ +R Q+G+V Q   L +
Sbjct: 481 FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS 540

Query: 455 TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 514
            +I ENI  G P  T+ E   AA  A     I  +P G  T + E G  LSGGQ+QR+ I
Sbjct: 541 GSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLI 599

Query: 515 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVI 574
           ARA+++ P+ILL DEATSALD  +++IV E+L+RL V R  +V+AHRLSTIRN D + V+
Sbjct: 600 ARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTR--IVIAHRLSTIRNADRIYVL 657

Query: 575 QQGQVVETGTHEELIAKAGAYASLIRFQ 602
             G+VV+ GT++EL+A+ G +A L R Q
Sbjct: 658 DAGRVVQQGTYDELMAREGLFAQLARRQ 685

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score =  235 bits (601), Expect = 7e-63
 Identities = 190/694 (27%), Positives = 304/694 (43%), Gaps = 125/694 (18%)

Query: 16   AEKKKEQSLPFFQ-LFS----------------FADKYDWCLMIFGSLGAVIHGSSMPVF 58
            +E      LPF + LF                 F+ K D  ++    L A   G   PVF
Sbjct: 788  SENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVA---GGLYPVF 844

Query: 59   FLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVST 118
             LL+ + V+       D   +     KY+LY + + + +  S   +       GE+   T
Sbjct: 845  ALLYAKYVSTL----FDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKT 900

Query: 119  LRKKYLEAVLKQDVGFFDTDARTGDIVFS-VSTDTLLVQDAISEKVGNFIHYLSTFLAGL 177
            ++++  E +L Q++ FFD D     ++ + ++ D  L++  +   +  F H++  FL  +
Sbjct: 901  MKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSM 960

Query: 178  VVGFVSAWRLALLSIAVIPGIAF-------------------------AGGLYAYTLTGL 212
            V+ F     +A    AV+ G  F                          G ++AY     
Sbjct: 961  VMSFYFCPIVA----AVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAY----- 1011

Query: 213  TSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGL 272
             +   E + +   + ++A   + TV  Y  E    N    AI  + K   +  +   +  
Sbjct: 1012 -NSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLW 1070

Query: 273  GCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGK 332
            G +        +  +W+    IR G         ++F+ +  G   G+  S  G     K
Sbjct: 1071 GFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAK 1130

Query: 333  AAGYKLMEIIKQKPSI-IQDPTNGRCLD--EVNGNIEFKNVTFSYPSRPDVIIFRDFSIF 389
             +  K   +I +K +I ++D    R  +  ++ G IE  +V F Y SRP+V I++D +  
Sbjct: 1131 LSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFS 1190

Query: 390  FPAGKTVAVVGGSGSGKSTVVSLIERFYD-PNAGHVLLDN-------------------- 428
              + KT A+VG +GSGKSTV+SL+ RFYD  N  H++  N                    
Sbjct: 1191 CDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNV 1250

Query: 429  ---------------------------------VDIKTLQLRWLRDQIGLVNQEPALFAT 455
                                             VDI    L+ LR+   +V+QEP LF  
Sbjct: 1251 GMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM 1310

Query: 456  TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 515
            +I ENI +GK +AT  +V+ A   A    FI  LPN Y T VG  G  LSGGQKQRIAIA
Sbjct: 1311 SIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIA 1370

Query: 516  RAMLKNPKILLLDEATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNVDTVAV 573
            RA+L+ PKILLLDEATS+LD+ SE ++++ +  +     +T + +AHR+++I+  D + V
Sbjct: 1371 RALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVV 1430

Query: 574  I----QQGQVVET-GTHEELI-AKAGAYASLIRF 601
                 + G  V+  GTHEEL+  + G Y   ++ 
Sbjct: 1431 FNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464

Length = 1466

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  224 bits (572), Expect = 1e-62
 Identities = 130/480 (27%), Positives = 228/480 (47%), Gaps = 40/480 (8%)

Query: 140 RTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIA 199
           R+GD++  +  D   + +        ++  ++  +  LV+  V    L+  SI     + 
Sbjct: 113 RSGDLLNRLVADVDALDNL-------YLRVIAPAVVALVLIAVVTIGLSFFSI--PLALL 163

Query: 200 FAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRT-VYSYV-GESK-----ALNSYSD 252
               L    L  + +    +    G    Q  A +R+    +V G+++     A ++Y  
Sbjct: 164 LGLILLL-LLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRT 222

Query: 253 AIQNT----LKLGYKA---GMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAF 305
           A++ T    LK   K           L    G+  +   L+ W A       V  G  A 
Sbjct: 223 ALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVI--GLLLWMAAQ-----VGAGALAQ 275

Query: 306 TAIFSAIVGGMSLGQSFSNL--GAFS-KGK--AAGYKLMEIIKQKPSIIQDPTNGRCLDE 360
                A++   +  ++F  L  GAF   G+  A+  +L +I+ QKP +            
Sbjct: 276 PGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEV---TFPDEQTAT 332

Query: 361 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
               +E +NV+F+YP +      ++F++    G+ VA++G SGSGKST++ L+   +DP 
Sbjct: 333 TGQALELRNVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391

Query: 421 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAA 480
            G + L+ V+I +L  + LR+ I ++ Q   LF+ T+ +N+    P+A+  E+ AA    
Sbjct: 392 QGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQV 451

Query: 481 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
                +   P+G +T +GE G +LSGG+++R+A+ARA+L +  + LLDE T  LD  +E 
Sbjct: 452 GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511

Query: 541 IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 600
            V   L     G+T ++V HRL  +  +D + V+  G+++E GTH EL+A  G Y  L +
Sbjct: 512 QVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ 571

Length = 573

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score =  234 bits (598), Expect = 2e-62
 Identities = 227/914 (24%), Positives = 405/914 (44%), Gaps = 91/914 (9%)

Query: 365  IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
            I  KN  FS+ S+       D ++  P G  VA+VGG+G GK++++S +         H 
Sbjct: 615  ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAML----GELSHA 670

Query: 425  LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 484
               +V I        R  +  V Q   +F  T+ ENIL+G    +     A    A  H 
Sbjct: 671  ETSSVVI--------RGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHD 722

Query: 485  FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQ 543
             + LLP    T++GERGV +SGGQKQR+++ARA+  N  I + D+  SALDA  +  +  
Sbjct: 723  -LDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFD 781

Query: 544  EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQE 603
              +   + G+T V+V ++L  +  +D + ++ +G + E GT  EL        S   F++
Sbjct: 782  SCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAEL------SKSGSLFKK 835

Query: 604  MVRNRDFANPSTR-RSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAET 662
            ++ N    + +    +    +     T ++ +   S RNL  S   G  GR  +V   E 
Sbjct: 836  LMENAGKMDATQEVNTNDENILKLGPTVTIDV---SERNLG-STKQGKRGRSVLVKQEER 891

Query: 663  DRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPAS 722
            +    + +   +R  K     W   I+      L  ++      V +      +      
Sbjct: 892  ETGIISWN-VLMRYNKAVGGLWVVMIL------LVCYLTTEVLRVSSSTWLSIWTDQSTP 944

Query: 723  MERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEE 782
                   ++ +Y   G   V       ++      +   R+   ML +ILR  + +F   
Sbjct: 945  KSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFF--H 1002

Query: 783  EHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSF----IVAFIVEWRV-SLLIL 837
             + +  V  R + D  D+   +A+ +++ +  +  LL++F     V+ I  W +  LLIL
Sbjct: 1003 TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLIL 1062

Query: 838  GTYPLLVLANFAQQL-----------------SLKGFAGDTA-KAHAKTSMIAGEGV-SN 878
                 L   + ++++                 +L G +   A KA+ + + I G+ + +N
Sbjct: 1063 FYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNN 1122

Query: 879  IRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAG--ILFGISQFALHASEALILWYGV 936
            IR   A  + N+ L++              R  T G  +++  + FA       +L  G 
Sbjct: 1123 IRFTLANTSSNRWLTI--------------RLETLGGVMIWLTATFA-------VLRNGN 1161

Query: 937  HLVGKGVSTFSKVIKVFVVLVVTANS-VAETVSLAPEIIRGGESVGSVFSTLDRSTRIDP 995
                 G ++   ++  + + + T  S V    S A   +   E VG+       +T I  
Sbjct: 1162 AENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIE 1221

Query: 996  DDPDAEPVET--IRGEIELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKS 1052
            ++    PV     RG I+   V   Y  RP +  V    +  +   +   +VG +G+GKS
Sbjct: 1222 NN---RPVSGWPSRGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKS 1276

Query: 1053 SVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEG 1112
            S++  + R  +   G++MID  D+ +  L  LR  + ++ Q P LF+ ++  NI    E 
Sbjct: 1277 SMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSE- 1335

Query: 1113 ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLL 1172
              +A++ EA   A++   +   P      V E G   S GQ+Q +++ARA+L+   IL+L
Sbjct: 1336 HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVL 1395

Query: 1173 DEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 1232
            DEAT+++D  ++ ++Q  +    +  T +++AHRL+TI   D I V+  G+++E  S  E
Sbjct: 1396 DEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQE 1455

Query: 1233 LVSRPDGAYSRLLQ 1246
            L+SR   A+ R++ 
Sbjct: 1456 LLSRDTSAFFRMVH 1469

Length = 1495

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score =  219 bits (561), Expect = 2e-61
 Identities = 91/210 (43%), Positives = 125/210 (59%), Gaps = 2/210 (0%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +EF  V+ +YP R   +  R  S   P G+ VA+VG SG+GKST+++L+  F DP  G +
Sbjct: 322 LEFSGVSVAYPGRRPAL--RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 484
            ++ V +        RDQI  V Q P LFA TI ENI   +P+A+ AE+  A   A    
Sbjct: 380 AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDE 439

Query: 485 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 544
           F+  LP G  T +GE G  LSGGQ QR+A+ARA L++  +LLLDE T+ LDA +E+ V E
Sbjct: 440 FVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLE 499

Query: 545 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVI 574
           AL  L  GRT ++V HRL+     D + V+
Sbjct: 500 ALRALAQGRTVLLVTHRLALAALADRIVVL 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score =  215 bits (550), Expect = 1e-59
 Identities = 101/275 (36%), Positives = 163/275 (59%), Gaps = 4/275 (1%)

Query: 330 KGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIF 389
           +G AA Y  +  +  +  +++D +    + E  G ++     F+YP   D     + +  
Sbjct: 282 RGSAA-YSRIRAMLAEAPVVKDGS--EPVPEGRGELDVNIRQFTYPQT-DHPALENVNFT 337

Query: 390 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQE 449
              G+ + + G +GSGKST++SLI+R +D + G +   ++ +  LQL   R ++ +V+Q 
Sbjct: 338 LKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397

Query: 450 PALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 509
           P LF+ T+  NI  G+P+AT  E+E  A  A+ H  I  LP GY T+VGERGV LSGGQK
Sbjct: 398 PFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQK 457

Query: 510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVD 569
           QRI+IARA+L N +IL+LD+A SA+D  +E  +   L +   GRT ++ AHRLS +    
Sbjct: 458 QRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEAS 517

Query: 570 TVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEM 604
            + V+Q G + + G H++L  ++G Y  + R+Q++
Sbjct: 518 EILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQL 552

Length = 569

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score =  213 bits (545), Expect = 6e-59
 Identities = 106/344 (30%), Positives = 177/344 (51%), Gaps = 22/344 (6%)

Query: 264 AGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIF-----SAIVGGMSL 318
            G+++ L +    G+  +   L+ W A   +      G  A  A+F     +A    M +
Sbjct: 244 TGLSQALMILAN-GLTVV---LMLWLAAGGVGGNAQPG--ALIALFVFAALAAFEALMPV 297

Query: 319 GQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRP 378
             +F +LG      A+  ++ EI +QKP +    T+         ++   NV+F+YP +P
Sbjct: 298 AGAFQHLGQVI---ASARRINEITEQKPEVTFPTTST--AAADQVSLTLNNVSFTYPDQP 352

Query: 379 DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW 438
             ++ +  S+   AG+ VA++G +G GKST++ L+ R +DP  G +LL+   I       
Sbjct: 353 QPVL-KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAA 411

Query: 439 LRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLL--PNGYSTQ 496
           LR  I +V+Q   LF+ T+ +N+L   P A+   +              LL    G +  
Sbjct: 412 LRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLE---KLLEDDKGLNAW 468

Query: 497 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTV 556
           +GE G QLSGG+++R+ IARA+L +  +LLLDE T  LDA +E  + E L      +T +
Sbjct: 469 LGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVL 528

Query: 557 VVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 600
           ++ HRL+ +   D + V+  GQ++E GTH+EL+A+ G Y  L +
Sbjct: 529 MITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQ 572

Length = 574

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score =  201 bits (514), Expect = 7e-59
 Identities = 83/225 (36%), Positives = 135/225 (60%), Gaps = 8/225 (3%)

Query: 363 GNIEFKNVTFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 421
           G+IEFKNV+  Y P+ P V+  ++ S     G+ V +VG +GSGKS+++  + R  + ++
Sbjct: 1   GDIEFKNVSLRYRPNLPPVL--KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58

Query: 422 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP--EATMAEVEAAASA 479
           G +L+D VDI  + L  LR +I ++ Q+P LF+ TI  N+    P  E +  E+  A   
Sbjct: 59  GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL---DPFGEYSDEELWQALER 115

Query: 480 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
                F+  LP G  T V E G  LS GQ+Q + +ARA+L+  KIL+LDEAT+++D  ++
Sbjct: 116 VGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175

Query: 540 SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 584
           +++Q+ +       T + +AHRL TI + D + V+ +G+VVE  +
Sbjct: 176 ALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score =  214 bits (546), Expect = 3e-58
 Identities = 108/261 (41%), Positives = 162/261 (62%), Gaps = 15/261 (5%)

Query: 989  RSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGAS 1047
               + DP          + G IE+  V F Y  RPD  ++  D +L+I  G+  A+VG S
Sbjct: 439  DEAKTDPGK--------LSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPS 488

Query: 1048 GSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIA 1107
            GSGKS+++ L+  F  P +G V  DG+D+  L+++++R ++G+V Q   L + SIF+NIA
Sbjct: 489  GSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA 548

Query: 1108 YGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 1167
             G    T  E  EAAR A +   + A+P    T + E G  LSGGQ+QR+ IARA+++ P
Sbjct: 549  -GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP 607

Query: 1168 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 1227
             ILL DEATSALD  ++ ++ E+LERL    T +++AHRLSTIR  D I V+  GR+V+Q
Sbjct: 608  RILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ 665

Query: 1228 GSHSELVSRPDGAYSRLLQLQ 1248
            G++ EL++R  G +++L + Q
Sbjct: 666  GTYDELMARE-GLFAQLARRQ 685

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score =  211 bits (540), Expect = 3e-58
 Identities = 85/215 (39%), Positives = 133/215 (61%), Gaps = 2/215 (0%)

Query: 1032 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 1091
            N  + AGQ  ALVG SG+GK+S++  +  F  P  G + I+G ++R L+ +S R  +  V
Sbjct: 370  NFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWV 428

Query: 1092 QQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 1151
             Q P L   ++ DN+  G   A++ ++ +A   A V  F+  LP    TP+G++   LS 
Sbjct: 429  GQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSV 488

Query: 1152 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR 1211
            GQ QR+A+ARA+L+   +LLLDE T++LDA SE ++ +AL    R +TT++V H+L  + 
Sbjct: 489  GQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA 548

Query: 1212 GVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 1246
              D I V+QDG+IV+QG ++EL S+  G ++ LL 
Sbjct: 549  QWDQIWVMQDGQIVQQGDYAEL-SQAGGLFATLLA 582

Length = 588

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score =  214 bits (546), Expect = 3e-58
 Identities = 160/541 (29%), Positives = 261/541 (48%), Gaps = 41/541 (7%)

Query: 77  HKMTHEVCKYALYFVYLGLIVCFS-----SYAEIACWMYTGERQVSTLRKKYLEAVLKQD 131
           HKM        L  + +GLI+ +      SY +I      G+R    +   Y++ + +  
Sbjct: 189 HKMMG-----TLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELP 243

Query: 132 VGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFL-------AGLVVGFVSA 184
           + FF T  RTG+IV S  TD   + DA++  +      LS FL        GL +   + 
Sbjct: 244 MSFFST-RRTGEIV-SRFTDASSIIDALASTI------LSLFLDMWILVIVGLFLVRQNM 295

Query: 185 WRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYA--NAGIIAEQAIAQVRTVYSYVG 242
             L LLS+  IP  A    L+  T   L   + ++ A  N+ II  + +  + T+ S   
Sbjct: 296 -LLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSII--EDLNGIETIKSLTS 352

Query: 243 ESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGG 302
           E++  +       + L   +K   A             +   ++ W     +  G    G
Sbjct: 353 EAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLG 412

Query: 303 KAFTAIFSAIVGG-MSLGQSFSNLGA-FSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDE 360
           +  T  F+A++   ++  ++  NL       + A  +L E+     S   +      L+ 
Sbjct: 413 QLIT--FNALLSYFLTPLENIINLQPKLQAARVANNRLNEVY-LVDSEFINKKKRTELNN 469

Query: 361 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
           +NG+I   +V++SY    +++   D S+         +VG SGSGKST+  L+  F+   
Sbjct: 470 LNGDIVINDVSYSYGYGSNIL--SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR 527

Query: 421 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPEATMAEVEAAASA 479
           +G +LL+   +K +    LR  I  + QEP +F+ +ILEN+L G K   +  E+ AA   
Sbjct: 528 SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEI 587

Query: 480 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
           A     I  +P GY T++ E G  +SGGQKQRIA+ARA+L + K+L+LDE+TS LD  +E
Sbjct: 588 AEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE 647

Query: 540 -SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASL 598
             IV   L+  +  +T + VAHRLS  +  D + V+  G+++E G+H+EL+ + G YASL
Sbjct: 648 KKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASL 705

Query: 599 I 599
           I
Sbjct: 706 I 706

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  210 bits (536), Expect = 7e-58
 Identities = 86/250 (34%), Positives = 147/250 (58%), Gaps = 2/250 (0%)

Query: 998  PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL 1057
               E   T    +ELR+V F YP +      K+FNL +  G+  A++G SGSGKS+++ L
Sbjct: 325  FPDEQTATTGQALELRNVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQL 383

Query: 1058 IERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAE 1117
            +   +DP  G + ++G +I  L+ ++LR  I ++ Q   LF+ ++ DN+      A++ E
Sbjct: 384  LAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEE 443

Query: 1118 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 1177
            +  A +   +   + + P+   T +GE G +LSGG+++R+A+ARA+L +  + LLDE T 
Sbjct: 444  LWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTE 503

Query: 1178 ALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
             LD  +E  +   L     G+T ++V HRL  +  +D I V+ +G+I+E+G+H+EL++  
Sbjct: 504  GLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN- 562

Query: 1238 DGAYSRLLQL 1247
            +G Y RL QL
Sbjct: 563  NGRYKRLYQL 572

Length = 573

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score =  206 bits (526), Expect = 2e-56
 Identities = 77/216 (35%), Positives = 134/216 (62%), Gaps = 3/216 (1%)

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 444
           +F++  PAG+ +A+VG SG+GK+++++ +  F  P  G + ++ ++++ L     R  + 
Sbjct: 370 NFTL--PAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLS 426

Query: 445 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQL 504
            V Q P L   T+ +N+L G P+A+  +++ A   A    F+ LLP G  T +G++   L
Sbjct: 427 WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGL 486

Query: 505 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLST 564
           S GQ QR+A+ARA+L+  ++LLLDE T++LDA SE +V +AL+     +TT++V H+L  
Sbjct: 487 SVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLED 546

Query: 565 IRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIR 600
           +   D + V+Q GQ+V+ G + EL    G +A+L+ 
Sbjct: 547 LAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLA 582

Length = 588

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score =  193 bits (494), Expect = 3e-56
 Identities = 79/222 (35%), Positives = 132/222 (59%), Gaps = 2/222 (0%)

Query: 1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            G+IE ++V   Y      V+ K+ +  I+ G+   +VG +GSGKSS++  + R  + ++G
Sbjct: 1    GDIEFKNVSLRYRPNLPPVL-KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59

Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANV 1127
             ++IDG DI ++ L  LR +I ++ Q+P LF+ +I  N+    E  ++ E+ +A     +
Sbjct: 60   SILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGL 118

Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
              FV +LP    T V E G  LS GQ+Q + +ARA+L+   IL+LDEAT+++D E++ ++
Sbjct: 119  KEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178

Query: 1188 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 1229
            Q+ +    +  T + +AHRL TI   D I V+  GR+VE  S
Sbjct: 179  QKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score =  204 bits (521), Expect = 6e-56
 Identities = 99/248 (39%), Positives = 149/248 (60%), Gaps = 2/248 (0%)

Query: 1001 EPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIER 1060
            EPV   RGE+++    F YP   D    ++ N  ++ GQ   + G +GSGKS++++LI+R
Sbjct: 305  EPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQR 363

Query: 1061 FYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVE 1120
             +D + G +      + +L L S R ++ +V Q P LF+ ++ +NIA G+  AT+ E+  
Sbjct: 364  HFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEH 423

Query: 1121 AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 1180
             AR A+VH  +  LP  Y T VGERGV LSGGQKQRI+IARA+L N  IL+LD+A SA+D
Sbjct: 424  VARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483

Query: 1181 AESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGA 1240
              +E  +   L +   GRT ++ AHRLS +     I V+Q G I ++G+H +L  +  G 
Sbjct: 484  GRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS-GW 542

Query: 1241 YSRLLQLQ 1248
            Y  + + Q
Sbjct: 543  YRDMYRYQ 550

Length = 569

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score =  204 bits (521), Expect = 6e-55
 Identities = 135/528 (25%), Positives = 255/528 (48%), Gaps = 43/528 (8%)

Query: 735  IGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLA 794
            I A +   +   IQ +  +++G+ L+  +    +  +    + +F        +V+ R  
Sbjct: 203  IIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFF-STRRTGEIVS-RF- 259

Query: 795  TDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSL 854
            TDA+ +  A+A  I  +  +M  L+   +        + LL L + P+  +     + + 
Sbjct: 260  TDASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTF 319

Query: 855  KGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ----NKILSLFCH----ELRVPQSQT 906
                 D  +A+A  +    E ++ I T+ +  ++    +KI S F        +  ++  
Sbjct: 320  NKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379

Query: 907  LRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAET 966
             ++++ A     ++          ILW G +LV +G  T  ++I    +L      +   
Sbjct: 380  GQQAIKAVTKLILNVV--------ILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENI 431

Query: 967  VSLAPEI-------IRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAY 1019
            ++L P++        R  E V  V S      +          +  + G+I +  V ++Y
Sbjct: 432  INLQPKLQAARVANNRLNE-VYLVDSEFINKKKRTE-------LNNLNGDIVINDVSYSY 483

Query: 1020 PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL 1079
                +++   D +L I+      +VG SGSGKS++  L+  F+   +G+++++G  ++ +
Sbjct: 484  GYGSNIL--SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI 541

Query: 1080 NLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGATEAEVVEAARAANVHGFVSALPNAY 1138
            +  +LR  I  + QEP +F+ SI +N+  G KE  ++ E+  A   A +   +  +P  Y
Sbjct: 542  DRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGY 601

Query: 1139 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL--MR 1196
            +T + E G  +SGGQKQRIA+ARA+L +  +L+LDE+TS LD  +E   ++ +  L  ++
Sbjct: 602  QTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE---KKIVNNLLNLQ 658

Query: 1197 GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 1244
             +T + VAHRLS  +  D I V+  G+I+EQGSH EL+ R +G Y+ L
Sbjct: 659  DKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR-NGFYASL 705

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score =  201 bits (514), Expect = 7e-55
 Identities = 85/249 (34%), Positives = 146/249 (58%), Gaps = 3/249 (1%)

Query: 998  PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL 1057
            P        +  + L +V F YP +P  V  K  +L+I+AG+  AL+G +G GKS+++ L
Sbjct: 327  PTTSTAAADQVSLTLNNVSFTYPDQPQPV-LKGLSLQIKAGEKVALLGRTGCGKSTLLQL 385

Query: 1058 IERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAE 1117
            + R +DP  G+++++G+ I   +  +LR  I +V Q   LF+A++ DN+      A++  
Sbjct: 386  LTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA 445

Query: 1118 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 1177
            ++E  +   +   +          +GE G QLSGG+++R+ IARA+L +  +LLLDE T 
Sbjct: 446  LIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTE 504

Query: 1178 ALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
             LDAE+E  + E L    + +T +++ HRL+ +   D I V+ +G+I+EQG+H EL+++ 
Sbjct: 505  GLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ- 563

Query: 1238 DGAYSRLLQ 1246
             G Y +L Q
Sbjct: 564  QGRYYQLKQ 572

Length = 574

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score =  194 bits (494), Expect = 1e-52
 Identities = 108/327 (33%), Positives = 169/327 (51%), Gaps = 16/327 (4%)

Query: 904  SQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSV 963
            S     S  AG+L  +S++     ++L+L  G +L   G  T   +I         A S+
Sbjct: 215  SAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMI---------AGSI 265

Query: 964  AETVSLAP--EIIRGGESVGSVFSTLDRSTRI---DPDDPDAEPVETIRGEIELRHVDFA 1018
                +LAP    I G +          R   +    P    A P+    G + + +V   
Sbjct: 266  LVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAMPLPEPEGHLSVENVTIV 325

Query: 1019 YPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR 1078
             P        +  +  ++AG++ A++G SGSGKS++  LI   + PT+G V +DG D+++
Sbjct: 326  PPG-GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ 384

Query: 1079 LNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAY 1138
             + ++    IG + Q+  LF  ++ +NIA   E A   +++EAA+ A VH  +  LP+ Y
Sbjct: 385  WDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGY 444

Query: 1139 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-MRG 1197
             T +G  G  LSGGQ+QRIA+ARA+  +P +++LDE  S LD E E  L  A++ L  RG
Sbjct: 445  DTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARG 504

Query: 1198 RTTVLVAHRLSTIRGVDCIGVVQDGRI 1224
             T V++ HR S +  VD I V+QDGRI
Sbjct: 505  ITVVVITHRPSLLGCVDKILVLQDGRI 531

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score =  193 bits (492), Expect = 5e-52
 Identities = 94/241 (39%), Positives = 147/241 (60%), Gaps = 5/241 (2%)

Query: 363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 422
           G I+  NV+F+Y  R D ++ ++ ++  P+   VA+VG +GSGKST+ SL+  +Y    G
Sbjct: 339 GRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396

Query: 423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANA 482
            + LD   + +L    LR  + +V Q+P + A T L N+  G+ + +  +V  A      
Sbjct: 397 EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQL 455

Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
                 LP+G  T +GE+G  LS GQKQ +A+AR +++ P+IL+LDEAT+ +D+G+E  +
Sbjct: 456 AELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI 515

Query: 543 QEALDRLMVGRTT-VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRF 601
           Q+AL   +   TT VV+AHRLSTI   DT+ V+ +GQ VE GTH++L+A  G Y  + + 
Sbjct: 516 QQAL-AAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQL 574

Query: 602 Q 602
           Q
Sbjct: 575 Q 575

Length = 592

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score =  190 bits (485), Expect = 4e-51
 Identities = 96/252 (38%), Positives = 158/252 (62%), Gaps = 8/252 (3%)

Query: 998  PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL 1057
             D  P+++  G I++ +V FAY  R D +V ++ NL + +    ALVG +GSGKS++ +L
Sbjct: 331  NDDRPLQS--GRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASL 386

Query: 1058 IERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAE 1117
            +  +Y  T G++ +DG+ +  L+   LR  + +VQQ+P + A +   N+  G++  +E +
Sbjct: 387  LMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD-ISEEQ 445

Query: 1118 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 1177
            V +A     +     +LP+   TP+GE+G  LS GQKQ +A+AR +++ P IL+LDEAT+
Sbjct: 446  VWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATA 505

Query: 1178 ALDAESECVLQEALERLMRGRTT-VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236
             +D+ +E  +Q+AL   +R  TT V++AHRLSTI   D I V+  G+ VEQG+H +L++ 
Sbjct: 506  NIDSGTEQAIQQAL-AAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA 564

Query: 1237 PDGAYSRLLQLQ 1248
              G Y ++ QLQ
Sbjct: 565  -QGRYWQMYQLQ 575

Length = 592

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score =  186 bits (475), Expect = 3e-50
 Identities = 124/445 (27%), Positives = 202/445 (45%), Gaps = 42/445 (9%)

Query: 139 ARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGI 198
            R GD++  +  D   +QD         +  +      LVVG  +   +A+LS+      
Sbjct: 107 LRRGDLLGRLGADVDALQDLY-------VRVIVPAGVALVVGAAAVAAIAVLSVP----- 154

Query: 199 AFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYS---------------YVGE 243
             A  L A  L         S   A   AEQA+A++R   +                   
Sbjct: 155 -AALILAAGLLLAGFVAPLVSLR-AARAAEQALARLRGELAAQLTDALDGAAELVASGAL 212

Query: 244 SKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGK 303
             AL    +A +   +   +A  A  LG   T   A ++     W  G      V DG  
Sbjct: 213 PAALAQVEEADRELTRAERRAAAATALGAALTLLAAGLAVLGALWAGG----PAVADGRL 268

Query: 304 AFTAIFSAIVGGMSLGQSFSNLGA----FSKGKAAGYKLMEIIKQKP--SIIQDPTNGRC 357
           A   +   ++  ++  ++F+ L A     ++ +AA  +++E++      +    P  G  
Sbjct: 269 APVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAV 328

Query: 358 LDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY 417
                  +E ++++  YP  P V      S+  P G+ VA++G SGSGKST+++ +    
Sbjct: 329 GLGKPT-LELRDLSAGYPGAPPV--LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLL 385

Query: 418 DPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAA 477
           DP  G V LD V + +L    +R ++ +  Q+  LF TT+ EN+   +P+AT  E+ AA 
Sbjct: 386 DPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAAL 445

Query: 478 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
                  ++  LP+G  T +GE G +LSGG++QR+A+ARA+L +  ILLLDE T  LDA 
Sbjct: 446 ERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAE 505

Query: 538 SESIVQEALDRLMVGRTTVVVAHRL 562
           +   + E L   + GRT V++ H L
Sbjct: 506 TADELLEDLLAALSGRTVVLITHHL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score =  187 bits (476), Expect = 6e-50
 Identities = 143/507 (28%), Positives = 226/507 (44%), Gaps = 49/507 (9%)

Query: 763  VRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTS- 821
            +R  +L  I        +     +S  A  L   + D    + D     L  +   LT  
Sbjct: 82   IRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPLRD-----LDQVRQFLTGT 136

Query: 822  --------------FIVAFIVE-WRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHA 866
                            V F+   W   + + G   L+VLA   ++ + K    + ++A  
Sbjct: 137  GLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLK-EASEASI 195

Query: 867  KTSMIAGEGVSNIRTVAAF----NAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQF 922
            + + +A   + N   + A     N   +        L    S   R S   G    +S+ 
Sbjct: 196  RANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYL----SAQERASDRNGAFGALSRA 251

Query: 923  ALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAP--EIIRGGESV 980
               A ++ +L  G  LV KG  T   +I         A S+    +LAP    I   +  
Sbjct: 252  LRMALQSAVLGLGAWLVIKGEITPGMMI---------AGSILSGRALAPIDLAIANWKQF 302

Query: 981  GSVFSTLDRSTRIDPDDPDAEPVETI---RGEIELRHVDFAYPSRPDVVVFKDFNLRIRA 1037
             +   +  R   +  + P A     +   +G + +  +  A P +   ++ K  +  ++A
Sbjct: 303  VAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPIL-KGISFALQA 361

Query: 1038 GQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPAL 1097
            G++  ++G SGSGKS++  L+   + PT+G V +DG D+R+ + + L   IG + Q+  L
Sbjct: 362  GEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVEL 421

Query: 1098 FAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 1157
            F  +I +NIA   E A   +V+EAAR A VH  +  LP  Y T +GE G  LSGGQ+QRI
Sbjct: 422  FDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRI 481

Query: 1158 AIARAVLKNPAILLLDEATSALDAESECVLQEALERL-MRGRTTVLVAHRLSTIRGVDCI 1216
            A+ARA+  +P +++LDE  S LD+E E  L  A+     RG T V++AHR S +  VD I
Sbjct: 482  ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKI 541

Query: 1217 GVVQDGRIVEQGSHSEL---VSRPDGA 1240
             V+QDGRI   G   E+   V RP   
Sbjct: 542  LVLQDGRIAAFGPREEVLAKVLRPPPR 568

Length = 580

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score =  189 bits (482), Expect = 1e-48
 Identities = 139/486 (28%), Positives = 225/486 (46%), Gaps = 34/486 (6%)

Query: 17  EKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNG--FGKNQT 74
           +K K Q +PFF  F         L+    + A I G ++P F  +FG ++     G+N  
Sbjct: 38  KKIKTQKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGENVN 97

Query: 75  DIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGF 134
           DI              V +G+     S+    C      + + TL+ ++L++V  QD  F
Sbjct: 98  DI----------IFSLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQF 147

Query: 135 FDTD---ARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLS 191
            D +     T D+ F +      V   I  K      Y S FL   +       RL L  
Sbjct: 148 HDNNPGSKLTSDLDFYLEQ----VNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCI 203

Query: 192 IAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGI-IAEQAIAQVRTVYSYVGESKALNSY 250
             V P I +  G+       +  K+   Y N  + I E+A+  +RTV SY GE   L  +
Sbjct: 204 TCVFPLI-YICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKF 262

Query: 251 SDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTD--------GG 302
           + + +   K   KA   + L +G   G    S+A  FWY    I + +++        GG
Sbjct: 263 NLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGG 322

Query: 303 KAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVN 362
              + +   ++    L     N+  + K   A   L EII +KP ++++  +G+ L ++ 
Sbjct: 323 SVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKP-LVENNDDGKKLKDIK 381

Query: 363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 422
             I+FKNV F Y +R DV I++D +     GKT A VG SG GKST++ LIER YDP  G
Sbjct: 382 -KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEG 440

Query: 423 HVLL-DNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAAN 481
            +++ D+ ++K + L+W R +IG+V+Q+P LF+ +I  NI Y     ++ ++EA ++  N
Sbjct: 441 DIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSL--YSLKDLEALSNYYN 498

Query: 482 AHSFIT 487
                +
Sbjct: 499 EDGNDS 504

Length = 1466

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score =  177 bits (452), Expect = 3e-47
 Identities = 101/288 (35%), Positives = 145/288 (50%), Gaps = 9/288 (3%)

Query: 308 IFSAIVGGMSLG---QSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGN 364
           I  +I+ G +L     +      FS  + A  +L E++   PS          L E  G+
Sbjct: 261 IAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPS----RDPAMPLPEPEGH 316

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +  +NVT   P        R  S    AG+ +A++G SGSGKST+  LI   + P +G V
Sbjct: 317 LSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV 375

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 484
            LD  D+K          IG + Q+  LF  T+ ENI      A   ++  AA  A  H 
Sbjct: 376 RLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHE 435

Query: 485 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 544
            I  LP+GY T +G  G  LSGGQ+QRIA+ARA+  +PK+++LDE  S LD   E  +  
Sbjct: 436 LILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALAN 495

Query: 545 ALDRLMV-GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 591
           A+  L   G T VV+ HR S +  VD + V+Q G++   G  +E++AK
Sbjct: 496 AIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score =  166 bits (422), Expect = 4e-47
 Identities = 71/216 (32%), Positives = 106/216 (49%), Gaps = 44/216 (20%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E +NV+F YP     ++ R+ S     G+++A++G SGSGKST+  LI     P +G V
Sbjct: 1   LEVENVSFRYPGAEPPVL-RNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 484
            LD  DI       L D +G + Q+  LF+ +I ENIL                      
Sbjct: 60  RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENIL---------------------- 97

Query: 485 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 544
                               SGGQ+QR+ +ARA+  NP+IL+LDE  S LD   E  + +
Sbjct: 98  --------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137

Query: 545 ALDRL-MVGRTTVVVAHRLSTIRNVDTVAVIQQGQV 579
           A+  L   G T +V+AHR  T+ + D + V++ G+V
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score =  167 bits (426), Expect = 6e-47
 Identities = 86/244 (35%), Positives = 128/244 (52%), Gaps = 37/244 (15%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----P 1064
            IELR ++  Y    D    KD +L I  G+  AL+G SG GKS+++ L+ R  D     P
Sbjct: 1    IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57

Query: 1065 TAGKVMIDGKDIR--RLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-------KEGATE 1115
              G+V++DGKDI    +++  LR ++G+V Q+P  F  SI+DN+AYG        +   +
Sbjct: 58   DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117

Query: 1116 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 1175
              V EA R A +   V    +A           LSGGQ+QR+ +ARA+   P +LLLDE 
Sbjct: 118  ERVEEALRKAALWDEVKDRLHAL---------GLSGGQQQRLCLARALANEPEVLLLDEP 168

Query: 1176 TSALDAESECVLQEALERLMRGRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGS 1229
            TSALD  S   ++E +  L +  T V+V H      R++     D    + +GR+VE G 
Sbjct: 169  TSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVA-----DRTAFLLNGRLVEFGP 223

Query: 1230 HSEL 1233
              ++
Sbjct: 224  TEQI 227

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score =  176 bits (449), Expect = 8e-47
 Identities = 90/302 (29%), Positives = 147/302 (48%), Gaps = 5/302 (1%)

Query: 908  RRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETV 967
            R +    +   ++  A   +    LW G   V  G       + V V+L + A      +
Sbjct: 232  RAAAATALGAALTLLAAGLAVLGALWAGGPAVADGRLA-PVTLAVLVLLPLAAFEAFAAL 290

Query: 968  SLAPE-IIRGGESVGSVFSTLD-RSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDV 1025
              A + + R   +   +   LD      +   P A  V   +  +ELR +   YP     
Sbjct: 291  PAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYP--GAP 348

Query: 1026 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 1085
             V    +L +  G+  A++G SGSGKS+++A +    DP  G+V +DG  +  L+   +R
Sbjct: 349  PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVR 408

Query: 1086 LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGER 1145
             ++ +  Q+  LF  ++ +N+   +  AT+ E+  A     +  ++ ALP+   T +GE 
Sbjct: 409  RRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEG 468

Query: 1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 1205
            G +LSGG++QR+A+ARA+L +  ILLLDE T  LDAE+   L E L   + GRT VL+ H
Sbjct: 469  GARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITH 528

Query: 1206 RL 1207
             L
Sbjct: 529  HL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  168 bits (429), Expect = 4e-46
 Identities = 91/242 (37%), Positives = 134/242 (55%), Gaps = 24/242 (9%)

Query: 1010 IELRHVDFAYPSR--PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            IEL +V   +       V    D +L I  G+   ++G SG+GKS+++ LI     PT+G
Sbjct: 2    IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61

Query: 1068 KVMIDGKDIRRLNLKSLRL---KIGLVQQEPALFAA-SIFDNIAYGKE--GATEAEVVEA 1121
             V +DG+D+  L+   LR    KIG++ Q   L ++ ++F+N+A+  E  G  +AE+   
Sbjct: 62   SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEI--K 119

Query: 1122 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
             R A +   V     A + P      QLSGGQKQR+AIARA+  NP ILL DEATSALD 
Sbjct: 120  QRVAELLELVGLSDKADRYPA-----QLSGGQKQRVAIARALANNPKILLCDEATSALDP 174

Query: 1182 ESECVLQEALERLMR-----GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVS 1235
            E+    Q  LE L       G T VL+ H +  ++ + D + V+  GR+VE+G+ SE+ +
Sbjct: 175  ETT---QSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231

Query: 1236 RP 1237
             P
Sbjct: 232  NP 233

Length = 339

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score =  175 bits (445), Expect = 6e-46
 Identities = 100/292 (34%), Positives = 156/292 (53%), Gaps = 17/292 (5%)

Query: 308 IFSAIVGGMSLG---QSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGN 364
           I  +I+ G +L     + +N   F   + +  +L E++ + P+          L    G 
Sbjct: 279 IAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPA--AAER--MPLPAPQGA 334

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +  + +T + P +   I+ +  S    AG+ + ++G SGSGKST+  L+   + P +G V
Sbjct: 335 LSVERLTAAPPGQKKPIL-KGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV 393

Query: 425 LLDNVDIKTLQLRWLRDQ----IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAA 480
            LD  D++    +W R+Q    IG + Q+  LF  TI ENI     EA   +V  AA  A
Sbjct: 394 RLDGADLR----QWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLA 449

Query: 481 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
             H  I  LP GY T++GE G  LSGGQ+QRIA+ARA+  +P +++LDE  S LD+  E+
Sbjct: 450 GVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEA 509

Query: 541 IVQEALDRLMV-GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 591
            +  A+      G T VV+AHR S + +VD + V+Q G++   G  EE++AK
Sbjct: 510 ALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561

Length = 580

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score =  160 bits (407), Expect = 3e-45
 Identities = 73/216 (33%), Positives = 109/216 (50%), Gaps = 44/216 (20%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +E+ +V F YP   +  V ++ +  I  G+S A++G SGSGKS++  LI     PT+G+V
Sbjct: 1    LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHG 1129
             +DG DI + +   L   +G + Q+  LF+ SI +NI                       
Sbjct: 60   RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96

Query: 1130 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 1189
                               LSGGQ+QR+ +ARA+  NP IL+LDE  S LD E E  L +
Sbjct: 97   -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137

Query: 1190 ALERL-MRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 1224
            A+  L   G T +++AHR  T+   D I V++DGR+
Sbjct: 138  AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  163 bits (416), Expect = 3e-44
 Identities = 88/240 (36%), Positives = 131/240 (54%), Gaps = 22/240 (9%)

Query: 365 IEFKNVTFSYPSR--PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 422
           IE +NV+ ++       V    D S+  P G+   ++G SG+GKST++ LI     P +G
Sbjct: 2   IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61

Query: 423 HVLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAAS 478
            V +D  D+  L   +LR LR +IG++ Q   L ++ T+ EN+ +    A + + E    
Sbjct: 62  SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121

Query: 479 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD-AG 537
            A     +     G S +      QLSGGQKQR+AIARA+  NPKILL DEATSALD   
Sbjct: 122 VAELLELV-----GLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPET 176

Query: 538 SESIVQEALDRLM-----VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 591
           ++SI    L+ L      +G T V++ H +  ++ + D VAV+ QG++VE GT  E+ A 
Sbjct: 177 TQSI----LELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232

Length = 339

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score =  159 bits (405), Expect = 4e-44
 Identities = 83/241 (34%), Positives = 128/241 (53%), Gaps = 23/241 (9%)

Query: 1010 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            IEL++V   +      V   KD +L +  G+   ++G SG+GKS++I  I     PT+G 
Sbjct: 2    IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61

Query: 1069 VMIDGKDIRRLNLKSLRL---KIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARA 1124
            V++DG D+  L+ K LR    +IG++ Q   L ++ ++F+N+A   E A   +     R 
Sbjct: 62   VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121

Query: 1125 ANVHGFV--SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 1182
              +   V      +AY         QLSGGQKQR+ IARA+  NP +LL DEATSALD E
Sbjct: 122  LELLELVGLEDKADAYPA-------QLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174

Query: 1183 SECVLQEALERLM-----RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 1236
            +    Q  L  L       G T VL+ H +  ++ + D + V++ G +VE+G+  E+ + 
Sbjct: 175  TT---QSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231

Query: 1237 P 1237
            P
Sbjct: 232  P 232

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score =  156 bits (397), Expect = 3e-43
 Identities = 81/234 (34%), Positives = 126/234 (53%), Gaps = 36/234 (15%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +EL+ +   Y S   V    D +L +  G+  AL+G SG GK++++ LI     P +G++
Sbjct: 1    LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG------KEGATEAEVVEAA 1122
            +IDG+D+    +   R  IG+V Q+ ALF   ++ +NIA+G       +    A V E  
Sbjct: 58   LIDGRDV--TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115

Query: 1123 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 1182
                + G ++  P+           +LSGGQ+QR+A+ARA+ + P++LLLDE  SALDA+
Sbjct: 116  ELVGLEGLLNRYPH-----------ELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164

Query: 1183 SECVLQEALERLMR--GRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQG 1228
                L+E L+ L R  G TT+ V H       L+     D I V+ +GRIV+ G
Sbjct: 165  LREELREELKELQRELGITTIYVTHDQEEALALA-----DRIAVMNEGRIVQVG 213

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score =  157 bits (398), Expect = 4e-43
 Identities = 84/243 (34%), Positives = 131/243 (53%), Gaps = 25/243 (10%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----P 1064
            IE+ +++  Y    +    K+ NL I   Q  AL+G SG GKS+++  + R  D      
Sbjct: 2    IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58

Query: 1065 TAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEA 1116
              GKV+ DG+DI  +++++  LR ++G+V Q+P  F  SI+DNIAYG      K+     
Sbjct: 59   IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118

Query: 1117 EVVEAA-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 1175
            E+VE + + A       AL +  K  + +  + LSGGQ+QR+ IARA+   P +LLLDE 
Sbjct: 119  EIVEESLKKA-------ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEP 171

Query: 1176 TSALDAESECVLQEALERLMRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELV 1234
            TSALD  +   ++E ++ L +  T V+V H +    R  D      DG +VE G   ++ 
Sbjct: 172  TSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231

Query: 1235 SRP 1237
            + P
Sbjct: 232  TNP 234

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score =  155 bits (395), Expect = 9e-43
 Identities = 82/241 (34%), Positives = 122/241 (50%), Gaps = 31/241 (12%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----P 419
           IE +++   Y    D    +D S+  P G+  A++G SG GKST++ L+ R  D     P
Sbjct: 1   IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57

Query: 420 NAGHVLLDNVDIKTLQLR--WLRDQIGLVNQEPALFATTILENILYGKP-------EATM 470
           + G VLLD  DI  L +    LR ++G+V Q+P  F  +I +N+ YG         E   
Sbjct: 58  DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117

Query: 471 AEVEAAASAANAHSFITLLPNGYSTQVGER--GVQLSGGQKQRIAIARAMLKNPKILLLD 528
             VE A   A               +V +R   + LSGGQ+QR+ +ARA+   P++LLLD
Sbjct: 118 ERVEEALRKA-----------ALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLD 166

Query: 529 EATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEE 587
           E TSALD  S + ++E +  L    T V+V H +     V D  A +  G++VE G  E+
Sbjct: 167 EPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226

Query: 588 L 588
           +
Sbjct: 227 I 227

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score =  153 bits (388), Expect = 2e-42
 Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 41/219 (18%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +   NV+FSYP +   +  ++ S+    G+ +A++G SGSGKST++ L+     P  G +
Sbjct: 1   LSINNVSFSYPEQEQQV-LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 484
            LD V +  L+ + L   I ++NQ P LF TT+  N+                       
Sbjct: 60  TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95

Query: 485 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 544
                           G + SGG++QR+A+AR +L++  I+LLDE T  LD  +E  +  
Sbjct: 96  ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139

Query: 545 ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETG 583
            +  ++  +T + + H L+ I ++D +  ++ G+++  G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score =  153 bits (389), Expect = 6e-42
 Identities = 89/242 (36%), Positives = 131/242 (54%), Gaps = 27/242 (11%)

Query: 365 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           IE KNV+  +      V   +D S+  P G+   ++G SG+GKST++  I     P +G 
Sbjct: 2   IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61

Query: 424 VLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILY-----GKPEATMAEVE 474
           VL+D  D+  L   +LR  R +IG++ Q   L ++ T+ EN+       G P    AE+E
Sbjct: 62  VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVP---KAEIE 118

Query: 475 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
                      + L+  G   +      QLSGGQKQR+ IARA+  NPK+LL DEATSAL
Sbjct: 119 ERV-----LELLELV--GLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSAL 171

Query: 535 D-AGSESIVQEALD---RLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELI 589
           D   ++SI+    D    L  G T V++ H +  ++ + D VAV+++G+VVE GT EE+ 
Sbjct: 172 DPETTQSILALLRDINREL--GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229

Query: 590 AK 591
           A 
Sbjct: 230 AN 231

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score =  153 bits (388), Expect = 1e-41
 Identities = 80/244 (32%), Positives = 125/244 (51%), Gaps = 36/244 (14%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE + +T S+  R    + +   +    G+ +A++G SGSGKST++ LI     P++G V
Sbjct: 1   IELRGLTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57

Query: 425 LLDNVDIKTL---QLRWLRDQIGLVNQEPALF-ATTILENILY------GKPEATMAE-V 473
           L+D  DI  L   +L  LR ++G++ Q  ALF + T+ EN+ +         E  + E V
Sbjct: 58  LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117

Query: 474 EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSA 533
                A        L P            +LSGG K+R+A+ARA+  +P++LL DE T+ 
Sbjct: 118 LEKLEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTAG 166

Query: 534 LDAGSESIVQEALDRLM------VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHE 586
           LD     I    +D L+      +G T+++V H L T   + D +AV+  G++V  GT E
Sbjct: 167 LD----PIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPE 222

Query: 587 ELIA 590
           EL A
Sbjct: 223 ELRA 226

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  152 bits (387), Expect = 1e-41
 Identities = 82/241 (34%), Positives = 123/241 (51%), Gaps = 25/241 (10%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE  ++ F YP        KD +L I  G+   L+G +GSGKS+++ L+     PT+G+V
Sbjct: 4    IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61

Query: 1070 MIDGKDIR-RLNLKSLRLKIGLVQQEPA--LFAASIFDNIAYGKE--GATEAEVVEAARA 1124
            ++DG D     +L  LR K+GLV Q P   LF  ++ D +A+G E  G    E+ E    
Sbjct: 62   LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121

Query: 1125 A----NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 1180
            A     +   +   P             LSGGQKQR+AIA  +   P ILLLDE T+ LD
Sbjct: 122  ALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170

Query: 1181 AESECVLQEALERLM--RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
             +    L E L++L    G+T ++V H L  +    D + V+ DG+I+  G  +E+ +  
Sbjct: 171  PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230

Query: 1238 D 1238
            +
Sbjct: 231  E 231

Length = 235

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score =  153 bits (389), Expect = 1e-41
 Identities = 82/233 (35%), Positives = 125/233 (53%), Gaps = 25/233 (10%)

Query: 1025 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 1084
             V   D +L +R G+   ++G SGSGKS+++  I R  +PT+GKV+IDG+DI  ++ K L
Sbjct: 37   TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKEL 96

Query: 1085 ----RLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANV------HGFVSA 1133
                R KI +V Q  AL    ++ +N+A+G E           RAA         G+   
Sbjct: 97   RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK 156

Query: 1134 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER 1193
             P+           +LSGG +QR+ +ARA+  +P ILL+DEA SALD      +Q+ L R
Sbjct: 157  YPD-----------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLR 205

Query: 1194 L--MRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 1243
            L     +T V + H L   +R  D I +++DGR+V+ G+  E+++ P   Y R
Sbjct: 206  LQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVR 258

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score =  153 bits (389), Expect = 1e-41
 Identities = 80/240 (33%), Positives = 118/240 (49%), Gaps = 30/240 (12%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E +N++F Y  +P   I  D S   P G+   ++G +GSGKST++  +     P +G V
Sbjct: 3   LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEP-ALFATTILENILYG-KP---------EATMAEV 473
           LLD  DI +L  + L  ++  V Q P A F  T+ E +L G  P         +     V
Sbjct: 60  LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119

Query: 474 EAAASAANAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATS 532
           E A                      +R V +LSGG++QR+ IARA+ +   ILLLDE TS
Sbjct: 120 EEALELLGLEHLA------------DRPVDELSGGERQRVLIARALAQETPILLLDEPTS 167

Query: 533 ALDAGSESIVQEALDRLMV--GRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 589
            LD   +  V E L  L    G T V+V H L+   R  D + +++ G++V  GT EE++
Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227

Length = 258

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score =  151 bits (385), Expect = 2e-41
 Identities = 83/243 (34%), Positives = 133/243 (54%), Gaps = 28/243 (11%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IELR +  ++  R    V K  +L +R G+  A++G SGSGKS+++ LI     P +G+V
Sbjct: 1    IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57

Query: 1070 MIDGKDIRRLN---LKSLRLKIGLVQQEPALFAA-SIFDNIAYG-------KEGATEAEV 1118
            +IDG+DI  L+   L  LR ++G++ Q  ALF + ++F+N+A+         E      V
Sbjct: 58   LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117

Query: 1119 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
            +E   A  + G     P            +LSGG K+R+A+ARA+  +P +LL DE T+ 
Sbjct: 118  LEKLEAVGLRGAEDLYPA-----------ELSGGMKKRVALARALALDPELLLYDEPTAG 166

Query: 1179 LDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVS 1235
            LD  +  V+ + +  L +  G T+++V H L T   + D I V+ DG+IV +G+  EL +
Sbjct: 167  LDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226

Query: 1236 RPD 1238
              D
Sbjct: 227  SDD 229

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  151 bits (384), Expect = 2e-41
 Identities = 80/219 (36%), Positives = 124/219 (56%), Gaps = 14/219 (6%)

Query: 1011 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 1070
            EL+++ F+YP         D +L I+ G+   +VG +GSGKS+++ L+     PT+G+V+
Sbjct: 1    ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59

Query: 1071 IDGKDIRRLNLKSLRLKIGLVQQEPA--LFAASIFDNIAYGKE--GATEAEVVEAARAAN 1126
            +DGKD+ +L+LK LR K+GLV Q P    F  ++ + +A+G E  G  E E+ E    A 
Sbjct: 60   VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119

Query: 1127 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 1186
                +  L +            LSGGQKQR+AIA  +  +P ILLLDE T+ LD      
Sbjct: 120  ELVGLEGLRDR---SPF----TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172

Query: 1187 LQEALERLMR-GRTTVLVAHRLSTIRGV-DCIGVVQDGR 1223
            L E L++L   G+T ++V H L  +  + D + V++DG+
Sbjct: 173  LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score =  150 bits (380), Expect = 4e-41
 Identities = 71/223 (31%), Positives = 124/223 (55%), Gaps = 22/223 (9%)

Query: 363 GNIEFKNVTFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 421
           G IE +N++  Y P  P V+  ++ S    AG+ + +VG +G+GKST++  + RF +   
Sbjct: 5   GEIEVENLSVRYAPDLPPVL--KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62

Query: 422 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAAN 481
           G + +D +DI T+ L  LR  + ++ Q+P LF+ TI  N+    P    ++ E   +   
Sbjct: 63  GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL---DPFDEYSDEEIYGA--- 116

Query: 482 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 541
                         +V E G+ LS GQ+Q + +ARA+LK P++L+LDEAT+++D  ++++
Sbjct: 117 -------------LRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163

Query: 542 VQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 584
           +Q+ +       T + +AHRL TI + D + V+  G+V E   
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  155 bits (393), Expect = 4e-41
 Identities = 81/240 (33%), Positives = 129/240 (53%), Gaps = 25/240 (10%)

Query: 1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
              +E+R+V  ++    D     D +L I+ G+   L+G SG GK++++ +I  F  P++G
Sbjct: 4    PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60

Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG-KEGATEAEVVEAARAA 1125
            ++++DG+DI   ++   +  IG+V Q  ALF   ++ +N+A+G K      +    AR  
Sbjct: 61   EILLDGEDIT--DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118

Query: 1126 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 1185
                 V     A + P      QLSGGQ+QR+A+ARA++  P +LLLDE  SALDA+   
Sbjct: 119  EALELVGLEGFADRKPH-----QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLRE 173

Query: 1186 VLQEALERLMR--GRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
             +++ L+ L R  G T V V H       +S     D I V+ DGRI + G+  E+  RP
Sbjct: 174  QMRKELKELQRELGITFVYVTHDQEEALAMS-----DRIAVMNDGRIEQVGTPEEIYERP 228

Length = 352

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score =  148 bits (376), Expect = 5e-41
 Identities = 61/219 (27%), Positives = 112/219 (51%), Gaps = 41/219 (18%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            + + +V F+YP + +  V K+ +L ++ G+  AL+G SGSGKS+++ L+     P  G++
Sbjct: 1    LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHG 1129
             +DG  +  L  K+L   I ++ Q P LF  ++ +N+                       
Sbjct: 60   TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95

Query: 1130 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 1189
                            G + SGG++QR+A+AR +L++  I+LLDE T  LD  +E  L  
Sbjct: 96   ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139

Query: 1190 ALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 1228
             +  +++ +T + + H L+ I  +D I  +++G+I+ QG
Sbjct: 140  LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score =  150 bits (381), Expect = 7e-41
 Identities = 80/234 (34%), Positives = 124/234 (52%), Gaps = 13/234 (5%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE  +V   Y      V   + NL I  G+   L+G SGSGK++ + +I R  +PT+G++
Sbjct: 1    IEFENVTKRYGGGKKAV--NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAY--GKEGATEAEVVEAARAAN 1126
             IDG+DIR  +   LR KIG V Q+  LF   ++ +NIA         + ++    RA  
Sbjct: 59   FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKI--RERADE 116

Query: 1127 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 1186
            +   V   P  +         +LSGGQ+QR+ +ARA+  +P +LL+DE   ALD  +   
Sbjct: 117  LLALVGLDPAEFA---DRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQ 173

Query: 1187 LQEALERLMR--GRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
            LQE  +RL +  G+T V V H +    R  D I ++++G IV+ G+  E++  P
Sbjct: 174  LQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  149 bits (379), Expect = 1e-40
 Identities = 88/226 (38%), Positives = 128/226 (56%), Gaps = 22/226 (9%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IEFK V++S        I +D S+ F  G    +VG SG+GKST++ LI R  DP  G +
Sbjct: 4   IEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG---KPEATMAEVEAAASAAN 481
           L+D VDIKT+ +  LR +IG+V Q+P LF  T+ +NI YG   K E  + +VE   S   
Sbjct: 61  LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV-DVEYYLSIVG 119

Query: 482 AHSFITLLPNGYSTQVGERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
                  L   Y+T    R V+ LSGG+ QR++IAR +  NP++LLLDE TSALD  S  
Sbjct: 120 -------LNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTE 168

Query: 541 IVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 583
           I++E + +L   +  T + + H +   + + D  A + +G +VE  
Sbjct: 169 IIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214

Length = 241

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score =  153 bits (388), Expect = 1e-40
 Identities = 91/240 (37%), Positives = 140/240 (58%), Gaps = 21/240 (8%)

Query: 1010 IELRHVDFAYP-SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            IEL+++   +P     +    + +L I AG+   ++GASG+GKS++I  I     PT+G+
Sbjct: 2    IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61

Query: 1069 VMIDGKDIRRLNLKSLRL---KIGLVQQEPALFAA-SIFDNIAYGKE--GATEAEVVEAA 1122
            V++DG+D+  L+ K LR    +IG++ Q   L ++ ++FDN+A   E  G  +AE+   A
Sbjct: 62   VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEI--KA 119

Query: 1123 RAANVHGFV--SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 1180
            R   +   V  S   + Y         QLSGGQKQR+AIARA+  NP +LL DEATSALD
Sbjct: 120  RVTELLELVGLSDKADRYPA-------QLSGGQKQRVAIARALASNPKVLLCDEATSALD 172

Query: 1181 AESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
              +   + E L+ + R  G T VL+ H +  ++ + D + V+  GR+VEQG+ SE+ S P
Sbjct: 173  PATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHP 232

Length = 343

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  147 bits (375), Expect = 2e-40
 Identities = 79/223 (35%), Positives = 112/223 (50%), Gaps = 22/223 (9%)

Query: 366 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 425
           E KN++FSYP         D S+    G+ V +VG +GSGKST++ L+     P +G VL
Sbjct: 1   ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59

Query: 426 LDNVDIKTLQLRWLRDQIGLVNQEPA--LFATTILENILYG-----KPEATMAE-VEAAA 477
           +D  D+  L L+ LR ++GLV Q P    F  T+ E + +G      PE  + E VE A 
Sbjct: 60  VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119

Query: 478 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
                       P             LSGGQKQR+AIA  +  +P ILLLDE T+ LD  
Sbjct: 120 ELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168

Query: 538 SESIVQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQ 578
               + E L +L   G+T ++V H L  +  + D V V++ G+
Sbjct: 169 GRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score =  147 bits (373), Expect = 3e-40
 Identities = 73/224 (32%), Positives = 125/224 (55%), Gaps = 24/224 (10%)

Query: 1008 GEIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 1066
            GEIE+ ++   Y P  P V+  K+ + +++AG+   +VG +G+GKS++I  + RF +   
Sbjct: 5    GEIEVENLSVRYAPDLPPVL--KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62

Query: 1067 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI-AYGKEGATEAEVVEAARAA 1125
            GK+ IDG DI  + L+ LR  + ++ Q+P LF+ +I  N+  + +   ++ E+  A R  
Sbjct: 63   GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEY--SDEEIYGALR-- 118

Query: 1126 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 1185
                            V E G+ LS GQ+Q + +ARA+LK P +L+LDEAT+++D  ++ 
Sbjct: 119  ----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162

Query: 1186 VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 1229
            ++Q+ +       T + +AHRL TI   D I V+  G + E   
Sbjct: 163  LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score =  146 bits (370), Expect = 4e-40
 Identities = 77/220 (35%), Positives = 111/220 (50%), Gaps = 48/220 (21%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E KNV+  Y       +  D S+   AG+ VA++G SGSGKST++  I    +P++G +
Sbjct: 1   LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57

Query: 425 LLDNVDIKTL--QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAAN 481
           L+D  D+  L  +L  LR +IG+V Q+ ALF   T+LENI  G                 
Sbjct: 58  LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100

Query: 482 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 541
                                 LSGGQ+QR+A+ARA+  +P +LLLDE TSALD  +   
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138

Query: 542 VQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQ 578
           V+  L  L   +G T V+V H L     + D V V++ G+
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  148 bits (377), Expect = 4e-40
 Identities = 81/242 (33%), Positives = 127/242 (52%), Gaps = 24/242 (9%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP----- 1064
            IE+R ++  Y    D    KD NL I   +  AL+G SG GKS+++  + R  D      
Sbjct: 8    IEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64

Query: 1065 TAGKVMIDGKDIR--RLNLKSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEA 1116
              G+V++DGK+I   ++++  LR ++G+V Q+P  F  SI+DN+AYG      K+   + 
Sbjct: 65   VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124

Query: 1117 EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 1176
             V  + + A       AL +  K  + +  + LSGGQ+QR+ IARA+   P +LL+DE T
Sbjct: 125  IVESSLKKA-------ALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177

Query: 1177 SALDAESECVLQEALERLMRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVS 1235
            SALD  S   ++E +  L +  T V+V H +    R  D       G +VE G   ++ +
Sbjct: 178  SALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237

Query: 1236 RP 1237
             P
Sbjct: 238  NP 239

Length = 253

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  148 bits (375), Expect = 5e-40
 Identities = 82/242 (33%), Positives = 131/242 (54%), Gaps = 20/242 (8%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            EIE + V +   S     + KD +++   G    +VG SG+GKS++I LI R  DPT G 
Sbjct: 3    EIEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59

Query: 1069 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVH 1128
            ++IDG DI+ +++  LR KIG+V Q+P LF  ++ DNI YG        +++  +  +V 
Sbjct: 60   ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGP-------MLKGEKNVDVE 112

Query: 1129 GFVSA--LPNAYKTPVGERGVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 1185
             ++S   L   Y T    R V+ LSGG+ QR++IAR +  NP +LLLDE TSALD  S  
Sbjct: 113  YYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTE 168

Query: 1186 VLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYS 1242
            +++E + +L      T + + H +   + + D    +  G +VE     +  + P    +
Sbjct: 169  IIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228

Query: 1243 RL 1244
            +L
Sbjct: 229  KL 230

Length = 241

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score =  147 bits (373), Expect = 6e-40
 Identities = 76/206 (36%), Positives = 110/206 (53%), Gaps = 26/206 (12%)

Query: 1010 IELRHVDFAYPS-RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            +E+R+V   Y      V   +D +L +  G+  ALVG SG GKS+++ +I     PT+G+
Sbjct: 1    LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60

Query: 1069 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAEVVEAARAA 1125
            V++DG+ +            G V Q+ AL    ++ DN+A G E  G  +AE  E A   
Sbjct: 61   VLVDGEPVTGPGPD-----RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115

Query: 1126 --NVH--GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
               V   GF +A P+           QLSGG +QR+A+ARA+  +P +LLLDE  SALDA
Sbjct: 116  LELVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164

Query: 1182 ESECVLQEALERLMR--GRTTVLVAH 1205
             +   LQE L  + R  G+T +LV H
Sbjct: 165  LTREQLQEELLDIWRETGKTVLLVTH 190

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score =  146 bits (370), Expect = 1e-39
 Identities = 77/228 (33%), Positives = 122/228 (53%), Gaps = 24/228 (10%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E K ++ +Y S   V    D S+    G+ +A++G SG GK+T++ LI     P++G +
Sbjct: 1   LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAH 483
           L+D  D+  +     R+ IG+V Q+ ALF   T+ ENI +G     +  V  A   A   
Sbjct: 58  LIDGRDVTGVPPE-RRN-IGMVFQDYALFPHLTVAENIAFG---LKLRGVPKAEIRARVR 112

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
             + L+  G    +     +LSGGQ+QR+A+ARA+ + P +LLLDE  SALDA     ++
Sbjct: 113 ELLELV--GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170

Query: 544 EALDRLM--VGRTTVVVAH------RLSTIRNVDTVAVIQQGQVVETG 583
           E L  L   +G TT+ V H       L+     D +AV+ +G++V+ G
Sbjct: 171 EELKELQRELGITTIYVTHDQEEALALA-----DRIAVMNEGRIVQVG 213

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score =  146 bits (370), Expect = 1e-39
 Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 18/218 (8%)

Query: 365 IEFKNVTFSYPSRPDVI--IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 422
           I  ++ +F++ S         +D ++  P G+ VA+VG  GSGKS+++S +    +  +G
Sbjct: 1   ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60

Query: 423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANA 482
            V              +   I  V+QEP +   TI ENIL+GKP       E    A   
Sbjct: 61  SV-------------SVPGSIAYVSQEPWIQNGTIRENILFGKPF-DEERYEKVIKACAL 106

Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESI 541
              + +LP+G  T++GE+G+ LSGGQKQRI++ARA+  +  I LLD+  SA+DA     I
Sbjct: 107 EPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHI 166

Query: 542 VQEAL-DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQ 578
            +  +   L+  +T ++V H+L  + + D + V+  G+
Sbjct: 167 FENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score =  146 bits (372), Expect = 2e-39
 Identities = 81/246 (32%), Positives = 125/246 (50%), Gaps = 41/246 (16%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE KN++ S+    D  + +  S+    G+ V ++G SGSGKST++  +    +P++G +
Sbjct: 3   IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59

Query: 425 LLDNVDI-KTLQLRWLRDQIGLVNQEPALFA-TTILENILYG--------KPEAT---MA 471
            +D  D+     +  LR ++G+V Q+  LF   T+LEN+           K EA    + 
Sbjct: 60  TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALE 119

Query: 472 EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT 531
            +E    A  A ++    P            QLSGGQ+QR+AIARA+  +PK++L DE T
Sbjct: 120 LLEKVGLADKADAY----PA-----------QLSGGQQQRVAIARALAMDPKVMLFDEPT 164

Query: 532 SALDAGSESIVQEALDRLMV-----GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTH 585
           SALD     +V E LD +M      G T ++V H +   R V D V  + QG+++E G  
Sbjct: 165 SALDP---ELVGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPP 220

Query: 586 EELIAK 591
           EE    
Sbjct: 221 EEFFDN 226

Length = 240

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  148 bits (377), Expect = 2e-39
 Identities = 82/236 (34%), Positives = 127/236 (53%), Gaps = 18/236 (7%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE  +V   Y ++       D NL I  G+   L+G SGSGK++ + +I R  +PT+G++
Sbjct: 2    IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAY--GKEGATEAEVVEAARAAN 1126
            +IDG+DI  L+   LR KIG V Q+  LF   ++ +NIA      G  +  +    RA  
Sbjct: 59   LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERI--KKRADE 116

Query: 1127 VHGFVSALPNAYKT--PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 1184
            +   V   P+ Y    P      +LSGGQ+QR+ +ARA+  +P ILL+DE   ALD  + 
Sbjct: 117  LLDLVGLDPSEYADRYP-----HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITR 171

Query: 1185 CVLQEALERLMR--GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
              LQE ++ L +  G+T V V H +   ++  D I V+  G IV+  +  E+++ P
Sbjct: 172  KQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227

Length = 309

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score =  148 bits (377), Expect = 3e-39
 Identities = 81/243 (33%), Positives = 130/243 (53%), Gaps = 30/243 (12%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            E+EL++V  ++       V KD NL I  G+   L+G SG GKS+++ +I    +PT+G+
Sbjct: 3    ELELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59

Query: 1069 VMIDGKDIRRLNLKSLRLKIGLVQQEPALF-AASIFDNIAYG------KEGATEAEVVEA 1121
            ++IDG+D+  L  +  +  I +V Q  AL+   ++++NIA+G       +   +  V E 
Sbjct: 60   ILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117

Query: 1122 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
            A+   +   ++  P            QLSGGQ+QR+A+ARA+++ P + LLDE  S LDA
Sbjct: 118  AKLLGLEHLLNRKPL-----------QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDA 166

Query: 1182 ESE----CVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 1236
            +        +++  ERL  G TT+ V H       + D I V+ DGRI + G+  EL  R
Sbjct: 167  KLRVLMRSEIKKLHERL--GTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224

Query: 1237 PDG 1239
            P  
Sbjct: 225  PAN 227

Length = 338

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score =  145 bits (368), Expect = 7e-39
 Identities = 75/254 (29%), Positives = 127/254 (50%), Gaps = 32/254 (12%)

Query: 1010 IELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPT 1065
            + +R++   Y           + +L I  G++  +VG SGSGKS+   ++A +E+   P+
Sbjct: 4    LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PS 60

Query: 1066 AGKVMIDGKDIRRL-NLKSLRLKIGLVQQEPAL-------FAASIFDNIAYGKEGATEAE 1117
            +G +++DGK +      K+    + +V Q+P             + + +       ++  
Sbjct: 61   SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR 120

Query: 1118 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 1177
            + E      V      LP ++      R  +LSGGQ+QRIAIARA++  P +L+LDE TS
Sbjct: 121  IAELLDQ--VG-----LPPSFLD---RRPHELSGGQRQRIAIARALIPEPKLLILDEPTS 170

Query: 1178 ALD----AESECVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSE 1232
            ALD    A+   +L E  +   RG T + ++H L+ +  + D I V+ +G+IVE G   E
Sbjct: 171  ALDVSVQAQILNLLLELKKE--RGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEE 228

Query: 1233 LVSRPDGAYSRLLQ 1246
            L+S P   Y+R L 
Sbjct: 229  LLSHPSHPYTRELL 242

Length = 252

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  144 bits (365), Expect = 1e-38
 Identities = 75/205 (36%), Positives = 108/205 (52%), Gaps = 28/205 (13%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +E+  V  ++     V V +D NL +  G+  A++G SG GKS+++ LI     PT+G+V
Sbjct: 4    LEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAEVVEAARA-- 1124
            ++DG+ +           IG V QE AL    ++ DN+A G E  G ++AE  E A+   
Sbjct: 61   LLDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115

Query: 1125 ANVH--GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 1182
              V   GF    P+           QLSGG +QR+AIARA+   P +LLLDE   ALDA 
Sbjct: 116  ELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164

Query: 1183 SECVLQEALERLMR--GRTTVLVAH 1205
            +   LQ+ L RL     +T +LV H
Sbjct: 165  TREELQDELLRLWEETRKTVLLVTH 189

Length = 248

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score =  141 bits (358), Expect = 2e-38
 Identities = 76/220 (34%), Positives = 112/220 (50%), Gaps = 48/220 (21%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +EL++V   Y       V  D +L I AG+  AL+G SGSGKS+++  I    +P +G +
Sbjct: 1    LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57

Query: 1070 MIDGKDIRRLN--LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAAN 1126
            +IDG+D+  L   L  LR +IG+V Q+ ALF   ++ +NIA G                 
Sbjct: 58   LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100

Query: 1127 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 1186
                                  LSGGQ+QR+A+ARA+  +P +LLLDE TSALD  +   
Sbjct: 101  ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138

Query: 1187 LQEALERL--MRGRTTVLVAHRLSTIRGV-DCIGVVQDGR 1223
            ++  L+ L    G T VLV H L     + D + V++DG+
Sbjct: 139  VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score =  142 bits (360), Expect = 4e-38
 Identities = 74/240 (30%), Positives = 124/240 (51%), Gaps = 34/240 (14%)

Query: 1010 IELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            +E++++  ++P+    V    D +  I+ G++  LVG SGSGKS++   I     PT+G 
Sbjct: 2    LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61

Query: 1069 VMIDGKDIRRLNLKSLRL---KIGLVQQEPALFAA-----SIFDNIA-----YGKEGATE 1115
            ++ DGKD+ +L+ +  ++   +I +V Q+P   ++     +I + IA     +GK    E
Sbjct: 62   IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKE 119

Query: 1116 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 1175
            A            G    + N Y  P      +LSGGQ+QR+AIARA+  NP +L+ DE 
Sbjct: 120  ARKEAVLLLLVGVGLPEEVLNRY--PH-----ELSGGQRQRVAIARALALNPKLLIADEP 172

Query: 1176 TSALDAESECVLQEALERLMR------GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQG 1228
            TSALD      +Q  +  L++      G T + + H L  +  + D + V+  G+IVE+G
Sbjct: 173  TSALDV----SVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  145 bits (368), Expect = 8e-38
 Identities = 82/237 (34%), Positives = 124/237 (52%), Gaps = 31/237 (13%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E +NV+ S+    D     D S+    G+ V ++G SG GK+T++ +I  F  P++G +
Sbjct: 6   LEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62

Query: 425 LLDNVDIKTL--QLRWLRDQIGLVNQEPALFAT-TILENILYG-KPEATMAEVEAAASAA 480
           LLD  DI  +  + R     IG+V Q  ALF   T+ EN+ +G K    + + E  A   
Sbjct: 63  LLDGEDITDVPPEKR----PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVE 118

Query: 481 NAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
            A   + L          +R   QLSGGQ+QR+A+ARA++  PK+LLLDE  SALDA   
Sbjct: 119 EALELVGL------EGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLR 172

Query: 540 SIVQEALDRL--MVGRTTVVVAH------RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
             +++ L  L   +G T V V H       +S     D +AV+  G++ + GT EE+
Sbjct: 173 EQMRKELKELQRELGITFVYVTHDQEEALAMS-----DRIAVMNDGRIEQVGTPEEI 224

Length = 352

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  149 bits (378), Expect = 1e-37
 Identities = 83/287 (28%), Positives = 137/287 (47%), Gaps = 46/287 (16%)

Query: 987  LDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPD--------VVVFKDFNLRIRAG 1038
            L     I          E +   + +R++   Y SR          V    D +  +R G
Sbjct: 261  LGDEKIIRLPRRGPLRAEPL---LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREG 317

Query: 1039 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD--IRRLNLKSLRLKIGLVQQEPA 1096
            ++  LVG SGSGKS++  ++     P++G ++ DG+D  +    L+ LR +I +V Q+P 
Sbjct: 318  ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP- 376

Query: 1097 LFAA-----SIFDNIA-----YGKEGATEAEVVEAARAANVHGFVSALPN-AYKTPVGER 1145
             +++     ++ D +A     +G     E      AR A +   V   P    + P    
Sbjct: 377  -YSSLNPRMTVGDILAEPLRIHGGGSGAERR----ARVAELLELVGLPPEFLDRYPH--- 428

Query: 1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR------GRT 1199
              +LSGGQ+QR+AIARA+   P +L+LDE  SALD      +Q  +  L++      G T
Sbjct: 429  --ELSGGQRQRVAIARALALEPKLLILDEPVSALDV----SVQAQVLNLLKDLQEELGLT 482

Query: 1200 TVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 1245
             + ++H L+ +R + D + V+ DGRIVE+G   ++   P   Y+R L
Sbjct: 483  YLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKL 529

Length = 539

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  140 bits (355), Expect = 2e-37
 Identities = 75/240 (31%), Positives = 114/240 (47%), Gaps = 25/240 (10%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE +N++F YP        +D S+    G+ V ++G +GSGKST++ L+     P +G V
Sbjct: 4   IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61

Query: 425 LLDNVDIKTLQLRW-LRDQIGLVNQEPA--LFATTILENILYGKPEATMAEVEAAASAAN 481
           L+D +D  + +    LR ++GLV Q P   LF  T+ + + +G  E      E       
Sbjct: 62  LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG-LENLGLPREEIEERVA 120

Query: 482 AHSFITLLPNGYSTQVGERGVQ------LSGGQKQRIAIARAMLKNPKILLLDEATSALD 535
                          VG   +       LSGGQKQR+AIA  +   P+ILLLDE T+ LD
Sbjct: 121 ----------EALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170

Query: 536 AGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKA 592
                 + E L +L    G+T ++V H L  +    D V V+  G+++  G   E+   A
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230

Length = 235

>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region

 Score =  142 bits (359), Expect = 2e-37
 Identities = 64/278 (23%), Positives = 135/278 (48%), Gaps = 7/278 (2%)

Query: 688 IMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLI 747
           ++  +  +L+G     F +++   ++        + + ++       +   +  +   L+
Sbjct: 2   LIAILLLILAGATALVFPLLLGRFLDSL---IDGNGDERSSLISLAILLIAVGVLQGLLL 58

Query: 748 QHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDE--EEHNSSLVAARLATDAADVKSAIA 805
           Q  F+  +GE L  R+R+ +  A+LR  +G      + ++   + +RL  D + ++  + 
Sbjct: 59  QGSFY--LGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLG 116

Query: 806 DRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAH 865
           D++ +  Q++ +++  FIV F   W+++L++L   PLL+L +      L+       KA+
Sbjct: 117 DKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAY 176

Query: 866 AKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALH 925
           AK   +A E +S IRTV AF  +   L  +   L   +   +++++TAG+ FGI+Q   +
Sbjct: 177 AKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISY 236

Query: 926 ASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSV 963
            S AL LW+G +LV  G  +   V     + +  +  +
Sbjct: 237 LSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274

This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score =  140 bits (354), Expect = 3e-37
 Identities = 75/236 (31%), Positives = 124/236 (52%), Gaps = 21/236 (8%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IEF+NVT  Y      +   + ++    G+ + ++G SGSGK+T + +I R  +P +G +
Sbjct: 1   IEFENVTKRYGGGKKAV--NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENI-----LYGKPEATMAEVEAAAS 478
            +D  DI+      LR +IG V Q+  LF   T+ ENI     L   P+      +    
Sbjct: 59  FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKE-----KIRER 113

Query: 479 AANAHSFITLLPNGYSTQVGER-GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
           A    + + L P  +     +R   +LSGGQ+QR+ +ARA+  +P +LL+DE   ALD  
Sbjct: 114 ADELLALVGLDPAEF----ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPI 169

Query: 538 SESIVQEALDRL--MVGRTTVVVAHRL-STIRNVDTVAVIQQGQVVETGTHEELIA 590
           +   +QE   RL   +G+T V V H +    R  D +A+++ G++V+ GT +E++ 
Sbjct: 170 TRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score =  139 bits (353), Expect = 3e-37
 Identities = 82/238 (34%), Positives = 123/238 (51%), Gaps = 26/238 (10%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IEL +V   Y      V     +L I+ G+   L+G SG GK++++ LI  F  PT+G++
Sbjct: 1    IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG------KEGATEAEVVEAA 1122
            ++DGKDI   NL   +  +  V Q  ALF   ++F+NIA+G       +   +  V EA 
Sbjct: 58   LLDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115

Query: 1123 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 1182
                + G+ +  P+           QLSGGQ+QR+AIARA++  P +LLLDE   ALD +
Sbjct: 116  DLVQLEGYANRKPS-----------QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164

Query: 1183 SECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
                +Q  L+RL +  G T V V H       + D I V+  G+I + G+  E+   P
Sbjct: 165  LRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score =  144 bits (365), Expect = 4e-37
 Identities = 82/233 (35%), Positives = 127/233 (54%), Gaps = 25/233 (10%)

Query: 1025 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 1084
            VV   D +L +  G+   ++G SGSGKS+++ L+ R  +PT G++++DGKDI +L+   L
Sbjct: 41   VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAEL 100

Query: 1085 RL----KIGLVQQEPALFA-ASIFDNIAYGKE--GATEAE----VVEAARAANVHGFVSA 1133
            R     KI +V Q  AL    ++ +N+A+G E  G  +AE     +EA     + G+   
Sbjct: 101  RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADK 160

Query: 1134 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER 1193
             PN           +LSGG +QR+ +ARA+  +P ILL+DEA SALD      +Q+ L  
Sbjct: 161  YPN-----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLE 209

Query: 1194 LMR--GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 1243
            L     +T V + H L   +R  D I +++DG IV+ G+  E++  P   Y R
Sbjct: 210  LQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVR 262

Length = 386

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score =  138 bits (349), Expect = 1e-36
 Identities = 78/226 (34%), Positives = 122/226 (53%), Gaps = 12/226 (5%)

Query: 1010 IELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            IEL++V   Y    + V   KD NL I AG+  A+VG SGSGKS+++ L+     PT+G+
Sbjct: 2    IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61

Query: 1069 VMIDGKDIRRLNLKSL----RLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAAR 1123
            V+I+GKD+ +L+ K L    R KIG V Q   L    ++ +N+      A ++       
Sbjct: 62   VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121

Query: 1124 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
            A  +   +       K        +LSGGQ+QR+AIARA++ NP I+L DE T  LD+++
Sbjct: 122  AEELLEVLGLEDRLLKKKPS----ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177

Query: 1184 ECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 1227
               + E L  L +  G+T ++V H     +  D +  ++DG+I E+
Sbjct: 178  AKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223

Length = 226

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score =  137 bits (348), Expect = 2e-36
 Identities = 74/241 (30%), Positives = 125/241 (51%), Gaps = 29/241 (12%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE++++  ++    D  V K  +L +  G+   ++G SGSGKS+++  +    +P +G +
Sbjct: 3    IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59

Query: 1070 MIDGKDI-RRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG-----KEGATEAEVVEAA 1122
             +DG+D+  + ++  LR K+G+V Q+  LF   ++ +N+        K    EA      
Sbjct: 60   TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAR----E 115

Query: 1123 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 1182
            +A  +   V     A   P      QLSGGQ+QR+AIARA+  +P ++L DE TSALD E
Sbjct: 116  KALELLEKVGLADKADAYPA-----QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPE 170

Query: 1183 SECVLQEALERLMR-----GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 1236
                + E L+ +M+     G T ++V H +   R V D +  +  G+I+E+G   E    
Sbjct: 171  L---VGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226

Query: 1237 P 1237
            P
Sbjct: 227  P 227

Length = 240

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score =  136 bits (346), Expect = 3e-36
 Identities = 77/238 (32%), Positives = 119/238 (50%), Gaps = 30/238 (12%)

Query: 365 IEFKNVTFSYPSRPDVI-IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           +E KN++ S+P+    +    D S     G+T+ +VG SGSGKST+   I     P +G 
Sbjct: 2   LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61

Query: 424 VLLDNVDIKTL---QLRWLRDQIGLVNQEP--ALFAT-TILENI-----LYGKPEATMAE 472
           ++ D  D+  L     +  R +I +V Q+P  +L    TI E I     ++GK     A 
Sbjct: 62  IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR 121

Query: 473 VEAAASAA----NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD 528
            EA              +   P+           +LSGGQ+QR+AIARA+  NPK+L+ D
Sbjct: 122 KEAVLLLLVGVGLPEEVLNRYPH-----------ELSGGQRQRVAIARALALNPKLLIAD 170

Query: 529 EATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 583
           E TSALD   ++ + + L +L   +G T + + H L  +  + D VAV+  G++VE G
Sbjct: 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score =  136 bits (345), Expect = 4e-36
 Identities = 69/206 (33%), Positives = 101/206 (49%), Gaps = 26/206 (12%)

Query: 365 IEFKNVTFSYPS-RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           +E +NV+ +Y      V    D S+    G+ VA+VG SG GKST++ +I     P +G 
Sbjct: 1   LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60

Query: 424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANA 482
           VL+D   +            G V Q+ AL    T+L+N+  G     +  V  A +   A
Sbjct: 61  VLVDGEPVTGP-----GPDRGYVFQQDALLPWLTVLDNVALG---LELQGVPKAEARERA 112

Query: 483 HSFITLLPNGYSTQVGERGV------QLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
              + L        VG  G       QLSGG +QR+A+ARA+  +P +LLLDE  SALDA
Sbjct: 113 EELLEL--------VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164

Query: 537 GSESIVQEALDRLMV--GRTTVVVAH 560
            +   +QE L  +    G+T ++V H
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTH 190

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score =  137 bits (346), Expect = 4e-36
 Identities = 85/245 (34%), Positives = 129/245 (52%), Gaps = 25/245 (10%)

Query: 1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD---- 1063
            G+I ++ +D  Y    D    K  NL I   Q  AL+G SG GKS+ +  + R  D    
Sbjct: 2    GKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58

Query: 1064 -PTAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG------KEGAT 1114
                G+V++DG+DI    +++  LR ++G+V Q+P  F  SI+DN+AYG      K+   
Sbjct: 59   VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK 118

Query: 1115 EAEVVEAA-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD 1173
              E+VE + + A       AL +  K  + +  + LSGGQ+QR+ IARA+   P +LL+D
Sbjct: 119  LDEIVEKSLKGA-------ALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMD 171

Query: 1174 EATSALDAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSE 1232
            E TSALD  S   ++E ++ L +  T V+V H +    R  D      +G IVE G   +
Sbjct: 172  EPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231

Query: 1233 LVSRP 1237
            L + P
Sbjct: 232  LFTNP 236

Length = 250

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  137 bits (348), Expect = 4e-36
 Identities = 84/248 (33%), Positives = 131/248 (52%), Gaps = 43/248 (17%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE + VT S+  R   +I     +  P G+ +A++GGSGSGKST++ LI     P+ G +
Sbjct: 9   IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65

Query: 425 LLDNVDIKTL---QLRWLRDQIGLVNQEPALF-ATTILENILY------GKPEATMAEVE 474
           L+D  DI  L   +L  +R ++G++ Q+ ALF + T+ EN+ +        PE+ + E+ 
Sbjct: 66  LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125

Query: 475 AAASAANAHSFITLLPNGYSTQVGERGV-------QLSGGQKQRIAIARAMLKNPKILLL 527
                                 VG RG        +LSGG ++R+A+ARA+  +P++L L
Sbjct: 126 LMKLEL----------------VGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFL 169

Query: 528 DEATSALDA-GSESIVQ---EALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVET 582
           DE TS LD   +  I +   E  D L  G T ++V H L ++  + D VAV+  G+V+  
Sbjct: 170 DEPTSGLDPISAGVIDELIRELNDAL--GLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227

Query: 583 GTHEELIA 590
           GT EEL+A
Sbjct: 228 GTPEELLA 235

Length = 263

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  138 bits (350), Expect = 4e-36
 Identities = 73/239 (30%), Positives = 115/239 (48%), Gaps = 24/239 (10%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE +N+T  Y    D       S     G+   ++G +G+GK+T++ ++     P +G +
Sbjct: 5   IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENI-----LYGKP-EATMAEVEAAA 477
           L+   D+   +   +R +IG V QEP+L+   T+ EN+     LYG   E     +E   
Sbjct: 63  LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121

Query: 478 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
                      L +  + +V      LSGG KQR++IA A+L +P++L+LDE TS LD  
Sbjct: 122 ELFG-------LEDKANKKVR----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170

Query: 538 SESIVQEALDRL--MVGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELIAKAG 593
           S   + E L  L    G T ++  H L       D V ++  G+++  GT EEL  K G
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229

Length = 293

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score =  139 bits (353), Expect = 7e-36
 Identities = 89/249 (35%), Positives = 137/249 (55%), Gaps = 41/249 (16%)

Query: 365 IEFKNVTFSYP-SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           IE KN++  +P     +    + S+  PAG+   V+G SG+GKST++  I     P +G 
Sbjct: 2   IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61

Query: 424 VLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENI-----LYGKPEATMAEVE 474
           VL+D  D+  L   +LR  R QIG++ Q   L ++ T+ +N+     L G P+A   E++
Sbjct: 62  VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKA---EIK 118

Query: 475 AAAS--------AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILL 526
           A  +        +  A  +    P            QLSGGQKQR+AIARA+  NPK+LL
Sbjct: 119 ARVTELLELVGLSDKADRY----P-----------AQLSGGQKQRVAIARALASNPKVLL 163

Query: 527 LDEATSALD-AGSESIVQ--EALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVET 582
            DEATSALD A + SI++  + ++R + G T V++ H +  ++ + D VAVI  G++VE 
Sbjct: 164 CDEATSALDPATTRSILELLKDINREL-GLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222

Query: 583 GTHEELIAK 591
           GT  E+ + 
Sbjct: 223 GTVSEVFSH 231

Length = 343

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score =  134 bits (341), Expect = 7e-36
 Identities = 75/231 (32%), Positives = 111/231 (48%), Gaps = 44/231 (19%)

Query: 1010 IELRHVDFAYPSRPDVVVF--KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            I +    F + S      F  KD NL +  G+  A+VG  GSGKSS+++ +    +  +G
Sbjct: 1    ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60

Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATE--AEVVEAARAA 1125
             V + G              I  V QEP +   +I +NI +GK    E   +V++A    
Sbjct: 61   SVSVPGS-------------IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKAC--- 104

Query: 1126 NVHGFVSAL-------PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
                   AL       P+   T +GE+G+ LSGGQKQRI++ARAV  +  I LLD+  SA
Sbjct: 105  -------ALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSA 157

Query: 1179 LDAESE------CVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGR 1223
            +DA         C+L      L+  +T +LV H+L  +   D I V+ +GR
Sbjct: 158  VDAHVGRHIFENCILGL----LLNNKTRILVTHQLQLLPHADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  137 bits (348), Expect = 1e-35
 Identities = 77/235 (32%), Positives = 127/235 (54%), Gaps = 18/235 (7%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IEF+NV+  Y ++       D ++    G+ + ++G SGSGK+T + +I R  +P +G +
Sbjct: 2   IEFENVSKRYGNK---KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAH 483
           L+D  DI  L    LR +IG V Q+  LF   T+ ENI    P+  +   +       A 
Sbjct: 59  LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT-VPK--LLGWDKERIKKRAD 115

Query: 484 SFITLL---PNGYSTQVGER-GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
             + L+   P+ Y     +R   +LSGGQ+QR+ +ARA+  +P ILL+DE   ALD  + 
Sbjct: 116 ELLDLVGLDPSEY----ADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITR 171

Query: 540 SIVQEALDRLM--VGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELIAK 591
             +QE +  L   +G+T V V H +   ++  D +AV+  G++V+  T +E++A 
Sbjct: 172 KQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226

Length = 309

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  136 bits (344), Expect = 1e-35
 Identities = 77/243 (31%), Positives = 135/243 (55%), Gaps = 27/243 (11%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE+R V  ++  R   V+    +L +  G+  A++G SGSGKS+++ LI     P  G++
Sbjct: 9    IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65

Query: 1070 MIDGKDIRRLN---LKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGAT---EAEVVEAA 1122
            +IDG+DI +L+   L  +R ++G++ Q+ ALF++ ++F+N+A+     T   E+ + E  
Sbjct: 66   LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125

Query: 1123 R----AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
                    + G       A   P      +LSGG ++R+A+ARA+  +P +L LDE TS 
Sbjct: 126  LMKLELVGLRGAA-----ADLYP-----SELSGGMRKRVALARAIALDPELLFLDEPTSG 175

Query: 1179 LDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVS 1235
            LD  S  V+ E +  L    G T ++V H L ++  + D + V+ DG+++ +G+  EL++
Sbjct: 176  LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA 235

Query: 1236 RPD 1238
              D
Sbjct: 236  SDD 238

Length = 263

>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR

 Score =  136 bits (343), Expect = 1e-35
 Identities = 82/241 (34%), Positives = 134/241 (55%), Gaps = 6/241 (2%)

Query: 1008 GEIELRHVDFAYPS--RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT 1065
            GEI++  +   Y +  +P   V K     I+ GQ   + G +GSGKSS+     R  D  
Sbjct: 18   GEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74

Query: 1066 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAA 1125
             GK++IDG DI +L L +LR ++ ++ Q+P LF+ SI  N+    +  T+  + EA   A
Sbjct: 75   DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIA 133

Query: 1126 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 1185
             +   V +LP      V E G   S GQ+Q   +ARA ++  +IL++DEAT+++D  +E 
Sbjct: 134  QLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193

Query: 1186 VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 1245
            +LQ+ +      RT V +AHR+STI   D + V+  G +VE  +   L+++ DG ++ L+
Sbjct: 194  ILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253

Query: 1246 Q 1246
            +
Sbjct: 254  R 254

The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score =  134 bits (340), Expect = 1e-35
 Identities = 76/226 (33%), Positives = 112/226 (49%), Gaps = 19/226 (8%)

Query: 1010 IELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKS---SVIALIERFYDPT 1065
            IEL+++   Y    + V   K  +L I  G+  A+VG SGSGKS   +++  ++R   PT
Sbjct: 1    IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57

Query: 1066 AGKVMIDGKDIRRLNLKSL----RLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVE 1120
            +G+V +DG DI +L+ K L    R  IG V Q   L    +  +N+      A   +   
Sbjct: 58   SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER 117

Query: 1121 AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 1180
              RA  +   V  L +           +LSGGQ+QR+AIARA+  +P I+L DE T  LD
Sbjct: 118  RERAEELLERV-GLGDRLNHYPS----ELSGGQQQRVAIARALANDPKIILADEPTGNLD 172

Query: 1181 AESECVLQEALERL--MRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 1224
            +E+   + E L  L    G T V+V H        D I  ++DG+I
Sbjct: 173  SETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score =  135 bits (343), Expect = 2e-35
 Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 30/241 (12%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +E+ ++ F Y  +P   +  D +  I  G+   ++G +GSGKS+++  +     P +G+V
Sbjct: 3    LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEP-ALFAASIFDNIAYGK----------EGATEAEV 1118
            ++DGKDI  L+ K L  K+  V Q P A F  ++++ +  G+              E  V
Sbjct: 60   LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119

Query: 1119 VEAARAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATS 1177
             EA     +                +R V +LSGG++QR+ IARA+ +   ILLLDE TS
Sbjct: 120  EEALELLGLEHLA------------DRPVDELSGGERQRVLIARALAQETPILLLDEPTS 167

Query: 1178 ALDAESECVLQEALERLMR--GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELV 1234
             LD   +  + E L  L R  G T V+V H L+   R  D + +++DG+IV QG+  E++
Sbjct: 168  HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227

Query: 1235 S 1235
            +
Sbjct: 228  T 228

Length = 258

>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region

 Score =  135 bits (343), Expect = 2e-35
 Identities = 67/280 (23%), Positives = 129/280 (46%), Gaps = 8/280 (2%)

Query: 41  MIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFS 100
           ++   L  ++ G++  VF LL G  ++                   +L  + + + V   
Sbjct: 1   LLIAILLLILAGATALVFPLLLGRFLDS-----LIDGNGDERSSLISLAILLIAVGVLQG 55

Query: 101 SYAEIACWM--YTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDA 158
              + + ++    G+R    L +  L  +L   + FFDT    G++   ++ D   ++D 
Sbjct: 56  LLLQGSFYLGERLGQRIRKRLFRALLRQILGLPMSFFDT-NSVGELTSRLTNDVSKIRDG 114

Query: 159 ISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRE 218
           + +K+G F   L+T + G +V F   W+L L+ +A++P +     + A  L  L  K ++
Sbjct: 115 LGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQK 174

Query: 219 SYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGI 278
           +YA AG +AE++++ +RTV ++  E   L  Y  A+++  K G K  +  GL  G T  I
Sbjct: 175 AYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLI 234

Query: 279 ACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSL 318
           + +S+AL  W+    + +G    G  F  +   +     L
Sbjct: 235 SYLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274

This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score =  133 bits (337), Expect = 4e-35
 Identities = 76/235 (32%), Positives = 112/235 (47%), Gaps = 30/235 (12%)

Query: 365 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           IE KNV+  Y      V   +D ++   AG+ VA+VG SGSGKST+++L+     P +G 
Sbjct: 2   IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61

Query: 424 VLLDNVDIKTL------QLRWLRDQIGLVNQEPALFAT-TILENILYG------KPEATM 470
           VL++  D+  L      +LR  R +IG V Q   L    T+LEN+               
Sbjct: 62  VLINGKDLTKLSEKELAKLR--RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRK 119

Query: 471 AEVEAAASAAN-AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 529
              E            +   P+           +LSGGQ+QR+AIARA++ NPKI+L DE
Sbjct: 120 RAAEELLEVLGLEDRLLKKKPS-----------ELSGGQQQRVAIARALINNPKIILADE 168

Query: 530 ATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET 582
            T  LD+ +   V E L  L    G+T ++V H     +  D V  ++ G++ E 
Sbjct: 169 PTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223

Length = 226

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score =  145 bits (368), Expect = 6e-35
 Identities = 87/259 (33%), Positives = 145/259 (55%), Gaps = 13/259 (5%)

Query: 363  GNIEFKNVTFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 421
            G+I+F++V   Y P  P V+    F I  P+ K V +VG +G+GKS++++ + R  +   
Sbjct: 1236 GSIKFEDVVLRYRPELPPVLHGLSFEIS-PSEK-VGIVGRTGAGKSSMLNALFRIVELER 1293

Query: 422  GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP--EATMAEVEAAASA 479
            G +L+D  DI    L  LR  +G++ Q P LF+ T+  N+    P  E   A++  +   
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL---DPFNEHNDADLWESLER 1350

Query: 480  ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
            A+    I     G   +V E G   S GQ+Q +++ARA+L+  KIL+LDEAT+A+D  ++
Sbjct: 1351 AHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1410

Query: 540  SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI 599
            +++Q+ +       T +++AHRL+TI + D + V+  G+VVE  T E L++  G+     
Sbjct: 1411 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGS----- 1465

Query: 600  RFQEMVRNRDFANPSTRRS 618
             F +MV++   AN    RS
Sbjct: 1466 AFSKMVQSTGAANAQYLRS 1484

Length = 1622

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score =  133 bits (337), Expect = 7e-35
 Identities = 76/240 (31%), Positives = 121/240 (50%), Gaps = 27/240 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN---- 420
           IE +N+   Y    +    ++ ++  P  +  A++G SG GKST++  + R  D      
Sbjct: 2   IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58

Query: 421 -AGHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMA 471
             G VL D  DI  K + +  LR ++G+V Q+P  F  +I +NI YG      K +  + 
Sbjct: 59  IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118

Query: 472 EV--EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 529
           E+  E+   AA        L +    ++ +  + LSGGQ+QR+ IARA+   P++LLLDE
Sbjct: 119 EIVEESLKKAA--------LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDE 170

Query: 530 ATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEEL 588
            TSALD  +   ++E +  L    T V+V H +    R  D  A    G++VE G  E++
Sbjct: 171 PTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQI 230

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score =  133 bits (337), Expect = 8e-35
 Identities = 72/242 (29%), Positives = 121/242 (50%), Gaps = 30/242 (12%)

Query: 365 IEFKNVTFSYPSRPDVI-IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           +  +N++  Y           + S+    G+T+ +VG SGSGKST+  L+     P++G 
Sbjct: 4   LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63

Query: 424 VLLDNVDI-KTLQLRWLRDQIGLVNQEP--ALFATTILENILY------GKPEATMAEVE 474
           +LLD   +    + +     + +V Q+P  +L     +  IL       G  ++     E
Sbjct: 64  ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAE 123

Query: 475 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
                    SF+   P+           +LSGGQ+QRIAIARA++  PK+L+LDE TSAL
Sbjct: 124 LLDQVGLPPSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEPTSAL 172

Query: 535 DAGSESIVQEALDRL-MVGR----TTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
           D    S+  + L+ L  + +    T + ++H L+ + ++ D +AV+  GQ+VE G  EEL
Sbjct: 173 DV---SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEEL 229

Query: 589 IA 590
           ++
Sbjct: 230 LS 231

Length = 252

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  140 bits (356), Expect = 8e-35
 Identities = 76/253 (30%), Positives = 127/253 (50%), Gaps = 41/253 (16%)

Query: 365 IEFKNVTFSYPSRPDVII--------FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF 416
           +  +N++  Y SR  + +          D S     G+T+ +VG SGSGKST+  ++   
Sbjct: 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340

Query: 417 YDPNAGHVLLD--NVDIKTLQLRWLRDQIGLVNQEPALFAT-----TILENI-----LYG 464
             P++G ++ D  ++D+   +LR LR +I +V Q+P  +++     T+ + +     ++G
Sbjct: 341 LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP--YSSLNPRMTVGDILAEPLRIHG 398

Query: 465 KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI 524
                 +  E  A  A     + L P        E    LSGGQ+QR+AIARA+   PK+
Sbjct: 399 G----GSGAERRARVAELLELVGLPPEFLDRYPHE----LSGGQRQRVAIARALALEPKL 450

Query: 525 LLLDEATSALDAGSESIVQEALDRLMV------GRTTVVVAHRLSTIRNV-DTVAVIQQG 577
           L+LDE  SALD      VQ  +  L+       G T + ++H L+ +R + D VAV+  G
Sbjct: 451 LILDEPVSALDV----SVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG 506

Query: 578 QVVETGTHEELIA 590
           ++VE G  E++  
Sbjct: 507 RIVEEGPTEKVFE 519

Length = 539

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score =  133 bits (336), Expect = 2e-34
 Identities = 79/225 (35%), Positives = 118/225 (52%), Gaps = 19/225 (8%)

Query: 398 VVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRWLR-DQIGLVNQEPALF 453
           ++G SGSGKST++  I R  +P +G VL+D  DI  +   +LR LR  +I +V Q  AL 
Sbjct: 55  IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALL 114

Query: 454 A-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 512
              T+LEN+ +G     +   E    AA A   + L    +         +LSGG +QR+
Sbjct: 115 PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHK-----YPDELSGGMQQRV 169

Query: 513 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLS-TIRNVD 569
            +ARA+  +P ILL+DEA SALD      +Q+ L RL   + +T V + H L   +R  D
Sbjct: 170 GLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGD 229

Query: 570 TVAVIQQGQVVETGTHEELIAK-AGAYASLIRFQEMVRNRDFANP 613
            +A+++ G++V+ GT EE++   A  Y       E  R  D A  
Sbjct: 230 RIAIMKDGRLVQVGTPEEILTNPANDYVR-----EFFRGVDRAKV 269

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score =  130 bits (330), Expect = 3e-34
 Identities = 73/223 (32%), Positives = 108/223 (48%), Gaps = 13/223 (5%)

Query: 365 IEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           IE KN++ +Y    + V   +  S+    G+ VA+VG SGSGKST+++++     P +G 
Sbjct: 1   IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60

Query: 424 VLLDNVDIKTL----QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAAS 478
           V +D  DI  L       + R  IG V Q   L    T LEN+        +A V     
Sbjct: 61  VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP---LLLAGVPKKER 117

Query: 479 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 538
              A   +  +  G   ++     +LSGGQ+QR+AIARA+  +PKI+L DE T  LD+ +
Sbjct: 118 RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175

Query: 539 ESIVQEALDRL--MVGRTTVVVAHRLSTIRNVDTVAVIQQGQV 579
              V E L  L    G T VVV H        D +  ++ G++
Sbjct: 176 GKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  132 bits (334), Expect = 6e-34
 Identities = 70/245 (28%), Positives = 121/245 (49%), Gaps = 22/245 (8%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE+R++   Y    D       +  +  G+   L+G +G+GK++++ ++     PT+G++
Sbjct: 5    IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNI-----AYGKEGATEAEVVEAAR 1123
            ++ G D+ +     +R +IG V QEP+L+   ++ +N+      YG       E +E   
Sbjct: 63   LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEEL- 120

Query: 1124 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
                      L +     V      LSGG KQR++IA A+L +P +L+LDE TS LD ES
Sbjct: 121  LELFG-----LEDKANKKVR----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPES 171

Query: 1184 ECVLQEALERLMR-GRTTVLVA-HRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGA 1240
               + E L  L + G  T+L++ H L       D + ++ DG+I+ +G+  EL  +  G 
Sbjct: 172  RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGK 231

Query: 1241 YSRLL 1245
                L
Sbjct: 232  GVIEL 236

Length = 293

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score =  130 bits (330), Expect = 8e-34
 Identities = 85/255 (33%), Positives = 132/255 (51%), Gaps = 25/255 (9%)

Query: 998  PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL 1057
                 V T   +I++R+++F Y         K+ NL I   Q  A +G SG GKS+++  
Sbjct: 2    AMMSMVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRT 58

Query: 1058 IERFYD--P---TAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG- 1109
              R Y+  P     G++++DG++I   + ++  LR K+G+V Q+P  F  SI+DNIA+G 
Sbjct: 59   FNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGV 118

Query: 1110 --KEGATEAEV---VE-AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 1163
               E  + AE+   VE A   A       AL N  K  + + G  LSGGQ+QR+ IAR +
Sbjct: 119  RLFEKLSRAEMDERVEWALTKA-------ALWNEVKDKLHQSGYSLSGGQQQRLCIARGI 171

Query: 1164 LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDG 1222
               P +LLLDE  SALD  S   ++E +  L +  T V+V H +    R  D    +  G
Sbjct: 172  AIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLG 231

Query: 1223 RIVEQGSHSELVSRP 1237
             ++E G+   + ++P
Sbjct: 232  ELIEFGNTDTIFTKP 246

Length = 260

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score =  129 bits (326), Expect = 1e-33
 Identities = 77/227 (33%), Positives = 122/227 (53%), Gaps = 26/227 (11%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE++++  ++       V K  +L ++ G+   ++G SGSGKS+++  I    +P +G +
Sbjct: 1    IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57

Query: 1070 MIDGKDI--RRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGK---EGATEAEVVEAAR 1123
            +IDG  +   + N+  LR K+G+V Q+  LF   ++ +NI       +G ++AE  E A 
Sbjct: 58   IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL 117

Query: 1124 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
                   V     A   P      QLSGGQ+QR+AIARA+  NP ++L DE TSALD E 
Sbjct: 118  EL--LEKVGLADKADAYPA-----QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPE- 169

Query: 1184 ECVLQEALERLMR-----GRTTVLVAHRLSTIRGV-DCIGVVQDGRI 1224
              ++ E L+ +M+     G T V+V H +   R V D +  + DGRI
Sbjct: 170  --LVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  127 bits (322), Expect = 1e-33
 Identities = 59/218 (27%), Positives = 108/218 (49%), Gaps = 48/218 (22%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE+R++   Y  +       D +L +  G+   L+G +G+GK+++I +I     P +G++
Sbjct: 1    IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVH 1128
             + GKDI++   + ++ +IG + +EP+L+   ++ +N+                      
Sbjct: 58   KVLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENL---------------------- 94

Query: 1129 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 1188
                               +LSGG KQR+A+A+A+L +P +L+LDE TS LD ES     
Sbjct: 95   -------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135

Query: 1189 EALERLMRGRTTVLVA-HRLSTIRGV-DCIGVVQDGRI 1224
            E L  L +   T+L++ H L     + D + ++ +GRI
Sbjct: 136  ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score =  127 bits (323), Expect = 1e-33
 Identities = 65/222 (29%), Positives = 105/222 (47%), Gaps = 46/222 (20%)

Query: 366 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 425
           E +N++  Y  R    +  D S+   AG+ V ++G +G+GKST++  +     P++G +L
Sbjct: 1   EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57

Query: 426 LDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSF 485
           LD  D+ +L  + L  +I  V Q                     +  +  A  A      
Sbjct: 58  LDGKDLASLSPKELARKIAYVPQ--------------------ALELLGLAHLA------ 91

Query: 486 ITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 544
                        +R   +LSGG++QR+ +ARA+ + P ILLLDE TS LD   +  + E
Sbjct: 92  -------------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138

Query: 545 ALDRL--MVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETG 583
            L RL    G+T V+V H L+   R  D V +++ G++V  G
Sbjct: 139 LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score =  140 bits (354), Expect = 2e-33
 Identities = 106/437 (24%), Positives = 211/437 (48%), Gaps = 45/437 (10%)

Query: 694  SVLSG----FIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQH 749
            + +SG    F    F ++M  M          ++     + +F  +  G++  +   I  
Sbjct: 69   ATISGGTLPFFVSVFGVIMKNM----------NLGENVNDIIFSLVLIGIFQFILSFISS 118

Query: 750  YFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDA----ADVKSAIA 805
            +   +    +TT++ + +    L++ V + D + H+++   ++L +D       V + I 
Sbjct: 119  FCMDV----VTTKILKTLKLEFLKS-VFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIG 172

Query: 806  DRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLL----VLANFAQQLSLKGFAGDT 861
             +   I    ++ L  +I +     R++L I   +PL+    V+ N   +++ K     T
Sbjct: 173  TKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKK-----T 227

Query: 862  AKAHAKTSM-IAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGIS 920
            +  +   +M I  E +  IRTV ++  +  IL  F    ++     L+ +    +  G+ 
Sbjct: 228  SLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMI 287

Query: 921  QFALHASEALILWYGVHLVGKGVSTF--------SKVIKVFVVLVVTANSVAETVSLAPE 972
               + AS A   WYG  ++   +S            VI + + ++++   +   +    E
Sbjct: 288  NGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITE 347

Query: 973  IIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFN 1032
             ++  E+  S++  ++R   ++ +D D + ++ I+ +I+ ++V F Y +R DV ++KD N
Sbjct: 348  YMKSLEATNSLYEIINRKPLVENND-DGKKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLN 405

Query: 1033 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI-DGKDIRRLNLKSLRLKIGLV 1091
              +  G++ A VG SG GKS+++ LIER YDPT G ++I D  +++ +NLK  R KIG+V
Sbjct: 406  FTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVV 465

Query: 1092 QQEPALFAASIFDNIAY 1108
             Q+P LF+ SI +NI Y
Sbjct: 466  SQDPLLFSNSIKNNIKY 482

Length = 1466

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score =  128 bits (324), Expect = 2e-33
 Identities = 76/227 (33%), Positives = 119/227 (52%), Gaps = 26/227 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE KN+  S+       + +   +    G+ V ++G SGSGKST++  I    +P++G +
Sbjct: 1   IEIKNLHKSFGDFH---VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57

Query: 425 LLDNVDI--KTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEA---AAS 478
           ++D + +      +  LR ++G+V Q+  LF   T+LENI       T+A ++    + +
Sbjct: 58  IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENI-------TLAPIKVKGMSKA 110

Query: 479 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 538
            A   +   L   G + +      QLSGGQ+QR+AIARA+  NPK++L DE TSALD   
Sbjct: 111 EAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP-- 168

Query: 539 ESIVQEALDRLMV-----GRTTVVVAHRLSTIRNV-DTVAVIQQGQV 579
             +V E LD +M      G T VVV H +   R V D V  +  G++
Sbjct: 169 -ELVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  129 bits (326), Expect = 2e-33
 Identities = 77/228 (33%), Positives = 120/228 (52%), Gaps = 20/228 (8%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR 1078
            +    K+  ++I   Q  A++G SG GK++++  I R  D        GK+   G+DI  
Sbjct: 15   EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74

Query: 1079 --LNLKSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEVVEAARAANVHGF 1130
              L++   R K+G+V Q+P  F  SI+DN+A+G      K       +VE +        
Sbjct: 75   PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKK----- 129

Query: 1131 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA 1190
             +AL +  K+ + + G +LSGGQ+QR+ IARA+   P ++LLDE TSALD  +   +++ 
Sbjct: 130  -AALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKL 188

Query: 1191 LERLMRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
            LE L    T V+V H +   IR  D I  +  G ++E G   E+V RP
Sbjct: 189  LEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERP 236

Length = 250

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score =  128 bits (325), Expect = 2e-33
 Identities = 79/248 (31%), Positives = 126/248 (50%), Gaps = 40/248 (16%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE +N++ +YP+       +D S+    G+ VA++G SG+GKST++  +    +P +G V
Sbjct: 1   IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58

Query: 425 LLDNVDIKTLQ---LRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAA 480
           L+D  DI  L+   LR LR QIG++ Q+  L    ++LEN+L G+               
Sbjct: 59  LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGR--------------L 104

Query: 481 NAHSFITLLPNGYS-----------TQVG------ERGVQLSGGQKQRIAIARAMLKNPK 523
              S    L   +             +VG      +R  QLSGGQ+QR+AIARA+++ PK
Sbjct: 105 GRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPK 164

Query: 524 ILLLDEATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIR-NVDTVAVIQQGQVV 580
           ++L DE  ++LD  S   V + L R+    G T +V  H++   R   D +  ++ G++V
Sbjct: 165 LILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224

Query: 581 ETGTHEEL 588
             G   EL
Sbjct: 225 FDGPPAEL 232

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score =  132 bits (333), Expect = 3e-33
 Identities = 78/229 (34%), Positives = 119/229 (51%), Gaps = 25/229 (10%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL---- 1084
             D +L I  G+   ++G SGSGKS+ + ++ R  +PTAG++ IDG++I + +   L    
Sbjct: 10   NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVR 69

Query: 1085 RLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAEVVEAARAA----NVHGFVSALPNA 1137
            R KIG+V Q+ ALF   +I  N + G E  G  E E  E A        +  +    P+ 
Sbjct: 70   RKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD- 128

Query: 1138 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR- 1196
                      +LSGG +QR+ +ARA+   P ILL+DEA SALD      +Q+ L++L   
Sbjct: 129  ----------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178

Query: 1197 -GRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 1243
              +T V + H L   IR  D I +++ G IV+ G+  E++  P   Y  
Sbjct: 179  LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVE 227

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score =  128 bits (323), Expect = 3e-33
 Identities = 76/237 (32%), Positives = 118/237 (49%), Gaps = 29/237 (12%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            I   +V  AYP        +D +  I  G+   L G SG+GKS+++ LI     PT GK+
Sbjct: 2    IRFENVSKAYPGGR--EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59

Query: 1070 MIDGKDIRRLNLKS---LRLKIGLVQQEPALFAA-SIFDNIAY-----GKEGATEAEVVE 1120
            +++G D+ RL  +    LR +IG+V Q+  L    ++++N+A      GK        V 
Sbjct: 60   LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119

Query: 1121 AA-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 1179
                   +     ALP+           QLSGG++QR+AIARA++  PA+LL DE T  L
Sbjct: 120  EVLDLVGLKHKARALPS-----------QLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168

Query: 1180 DAE-SECVLQEALERLMRGRTTVLVA-HRLSTIRGVD--CIGVVQDGRIVEQGSHSE 1232
            D + S  +++   E + R  TTVL+A H L  +  +    +  ++DGR+V   S   
Sbjct: 169  DPDLSWEIMR-LFEEINRLGTTVLMATHDLELVNRMRHRVL-ALEDGRLVRDESRGV 223

Length = 223

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score =  139 bits (352), Expect = 4e-33
 Identities = 74/241 (30%), Positives = 138/241 (57%), Gaps = 8/241 (3%)

Query: 363  GNIEFKNVTFSYPSRPDV-IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 421
            G +EF+N    Y  R D+ ++ R  ++    G+ V +VG +G+GKS++   + R  +   
Sbjct: 1283 GRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340

Query: 422  GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEA--AASA 479
            G +++D ++I  + L  LR +I ++ Q+P LF+ ++  N+    P +  ++ E   A   
Sbjct: 1341 GEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL---DPFSQYSDEEVWWALEL 1397

Query: 480  ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
            A+  +F++ LP+    +  E G  LS GQ+Q + +ARA+L+  KIL+LDEAT+A+D  ++
Sbjct: 1398 AHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457

Query: 540  SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI 599
            +++Q  +       T + +AHRL+TI +   V V+ +G+V E G    L+ + G + S+ 
Sbjct: 1458 NLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMA 1517

Query: 600  R 600
            +
Sbjct: 1518 K 1518

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  131 bits (332), Expect = 4e-33
 Identities = 81/245 (33%), Positives = 119/245 (48%), Gaps = 33/245 (13%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPT 1065
             I + +V   + +        D +L I++G+  AL+G SG+GKS+   +IA +E    P 
Sbjct: 2    SIRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PD 55

Query: 1066 AGKVMIDGKDIRRL-NLKSLRLKIGLVQQEPALFA-ASIFDNIAYG--------KEGATE 1115
            AG++ ++G+ +  + NL     K+G V Q  ALF   ++ DNIA+G         E    
Sbjct: 56   AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIR 115

Query: 1116 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 1175
            A V E  R   + G     P            QLSGGQ+QR+A+ARA+   P +LLLDE 
Sbjct: 116  ARVEELLRLVQLEGLADRYPA-----------QLSGGQRQRVALARALAVEPKVLLLDEP 164

Query: 1176 TSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSE 1232
              ALDA+    L+  L +L    G TTV V H       + D + V+  GRI + G   E
Sbjct: 165  FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224

Query: 1233 LVSRP 1237
            +   P
Sbjct: 225  VYDHP 229

Length = 345

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  128 bits (323), Expect = 5e-33
 Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 11/219 (5%)

Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG-----KVMIDGKDI-RRLNL 1081
             K  NL I A Q  AL+G SG GKS+++  + R  D   G     K+ +DG+DI   +++
Sbjct: 19   LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78

Query: 1082 KSLRLKIGLVQQEPALFAASIFDNIAYG--KEGATEAEVVEAARAANVHGFVSALPNAYK 1139
              LR+K+G+V Q+P  F  SI++N+AYG   +G  + +V++     ++ G  +AL +  K
Sbjct: 79   ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRG--AALWDEVK 136

Query: 1140 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 1199
              +      LSGGQ+QR+ IAR +   P ++L+DE TSALD  +   ++E +E L +  T
Sbjct: 137  DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYT 196

Query: 1200 TVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
             V+V H +   R + D       G +VE      + S P
Sbjct: 197  IVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNP 235

Length = 249

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score =  131 bits (332), Expect = 7e-33
 Identities = 87/243 (35%), Positives = 130/243 (53%), Gaps = 36/243 (14%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +ELR +  ++  +    V  + +L I  G+   L+G SG GK++V+ LI  F  P +G++
Sbjct: 15   VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG----KEGATEAE--VVEAA 1122
            M+DG+DI   ++ +    +  V Q  ALF   ++F+N+A+G    K  A E    V+EA 
Sbjct: 72   MLDGQDIT--HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129

Query: 1123 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 1182
            R   +  F      A + P      QLSGGQ+QR+AIARAV+  P +LLLDE+ SALD +
Sbjct: 130  RMVQLEEF------AQRKPH-----QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178

Query: 1183 SECVLQEALERLMR--GRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGSHSELV 1234
                +Q  L+ L R  G T V V H       +S     D I V++DGRI + G+  E+ 
Sbjct: 179  LRKQMQNELKALQRKLGITFVFVTHDQEEALTMS-----DRIVVMRDGRIEQDGTPREIY 233

Query: 1235 SRP 1237
              P
Sbjct: 234  EEP 236

Length = 375

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  134 bits (340), Expect = 8e-33
 Identities = 76/254 (29%), Positives = 124/254 (48%), Gaps = 35/254 (13%)

Query: 1015 VDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKS----SVIALIERFYDPTAGKVM 1070
            V+FA        V +D +  +  G+   +VG SGSGKS    +++ L+      T+G+V+
Sbjct: 13   VEFATDGGRVPAV-RDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI 71

Query: 1071 IDGKDIRRLNLKSLRL----KIGLVQQEPALFAA-----SIFDNI-----AYGKEGATEA 1116
            +DG+D+  L+ + +R     +I ++ Q+P    +     +I D I      +GK    EA
Sbjct: 72   LDGRDLLGLSEREMRKLRGKRIAMIFQDP--MTSLNPVMTIGDQIREALRLHGKGSRAEA 129

Query: 1117 EVVEAARAANVHGFVSALPNAYKTPVGERGV--QLSGGQKQRIAIARAVLKNPAILLLDE 1174
                  RA  +   V  LP+    P        QLSGG +QR+ IA A+   P +L+ DE
Sbjct: 130  R----KRAVELLEQVG-LPD----PERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADE 180

Query: 1175 ATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHS 1231
             T+ALD  ++  + + L+ L R  G   + + H L  +  + D + V+  G IVE G   
Sbjct: 181  PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTE 240

Query: 1232 ELVSRPDGAYSRLL 1245
            E++S P   Y+R L
Sbjct: 241  EILSNPQHPYTRGL 254

Length = 539

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score =  127 bits (321), Expect = 8e-33
 Identities = 73/219 (33%), Positives = 117/219 (53%), Gaps = 23/219 (10%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088
            K+ +L +  G    ++G +GSGKS ++  I  F  P +GK++++GKDI   NL   +  I
Sbjct: 16   KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDI 73

Query: 1089 GLVQQEPALFA-ASIFDNIAYG------KEGATEAEVVEAARAANVHGFVSALPNAYKTP 1141
              V Q  ALF   +++ NIAYG       +   E +V+E A    +      L N     
Sbjct: 74   SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGI----DHLLNRKPE- 128

Query: 1142 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTT 1200
                   LSGG++QR+AIARA++ NP ILLLDE  SALD  ++  L+E L+++ +    T
Sbjct: 129  ------TLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT 182

Query: 1201 VL-VAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
            VL V H       + D + ++ +G++++ G   E+  +P
Sbjct: 183  VLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score =  138 bits (348), Expect = 1e-32
 Identities = 135/536 (25%), Positives = 240/536 (44%), Gaps = 64/536 (11%)

Query: 108  WMYTGERQVST-LRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNF 166
            W+ +     +  L    L ++L+  + FF T+  TG ++   S D   +   ++  +  F
Sbjct: 973  WLISSSLHAAKRLHDAMLNSILRAPMLFFHTNP-TGRVINRFSKDIGDIDRNVANLMNMF 1031

Query: 167  IH----YLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYAN 222
            ++     LSTF     V  +S W +  L I     + +A  LY Y  T    +  +S   
Sbjct: 1032 MNQLWQLLSTFALIGTVSTISLWAIMPLLI-----LFYAAYLY-YQSTSREVRRLDSVTR 1085

Query: 223  AGIIAE-----QAIAQVRTVYSYVGESKALNSYSD-----AIQNTLKLGYKAGMAKGLGL 272
            + I A+       ++ +R   +Y   +K      D      + NT    +     + LG 
Sbjct: 1086 SPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLG- 1144

Query: 273  GCTYGIACMSWALVFWYAGVF--IRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL--GAF 328
                        ++ W    F  +RNG  +    F +    +   +S   + + L  G  
Sbjct: 1145 -----------GVMIWLTATFAVLRNGNAENQAGFASTMGLL---LSYTLNITTLLSGVL 1190

Query: 329  SKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVN---------GNIEFKNVTFSY-PSRP 378
             +   A   L  + ++  + I  P+    + E N         G+I+F++V   Y P  P
Sbjct: 1191 RQASKAENSLNSV-ERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLP 1249

Query: 379  DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW 438
             V+     S F    + V VVG +G+GKS++++ + R  +   G +++D+ D+    L  
Sbjct: 1250 PVL--HGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTD 1307

Query: 439  LRDQIGLVNQEPALFATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQ 496
            LR  + ++ Q P LF+ T+  NI    P  E   A++  A   A+    I   P G   +
Sbjct: 1308 LRRVLSIIPQSPVLFSGTVRFNI---DPFSEHNDADLWEALERAHIKDVIDRNPFGLDAE 1364

Query: 497  VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTV 556
            V E G   S GQ+Q +++ARA+L+  KIL+LDEAT+++D  ++S++Q  +       T +
Sbjct: 1365 VSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTML 1424

Query: 557  VVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFAN 612
            V+AHRL+TI + D + V+  GQV+E  + +EL+++  +      F  MV +   AN
Sbjct: 1425 VIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTS-----AFFRMVHSTGPAN 1475

Length = 1495

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  126 bits (319), Expect = 2e-32
 Identities = 69/205 (33%), Positives = 99/205 (48%), Gaps = 28/205 (13%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E + V+ S+     V +  D ++    G+ VA++G SG GKST++ LI     P +G V
Sbjct: 4   LEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANA- 482
           LLD   +           IG V QE AL    T+L+N+  G      ++ EA   A    
Sbjct: 61  LLDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115

Query: 483 -----HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
                  F    P+           QLSGG +QR+AIARA+   PK+LLLDE   ALDA 
Sbjct: 116 ELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164

Query: 538 SESIVQEALDRLM--VGRTTVVVAH 560
           +   +Q+ L RL     +T ++V H
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTH 189

Length = 248

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score =  126 bits (319), Expect = 2e-32
 Identities = 83/242 (34%), Positives = 130/242 (53%), Gaps = 28/242 (11%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE+ ++   YP+       KD +L I  G+  AL+G SG+GKS+++  +    +PT+G V
Sbjct: 1    IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58

Query: 1070 MIDGKDIRRL---NLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGA-----------T 1114
            +IDG DI +L    L+ LR +IG++ Q+  L    S+ +N+  G+ G             
Sbjct: 59   LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118

Query: 1115 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 1174
            + E   A  A      V  L  AY+     R  QLSGGQ+QR+AIARA+++ P ++L DE
Sbjct: 119  KEEKQRALAALER---VGLLDKAYQ-----RADQLSGGQQQRVAIARALMQQPKLILADE 170

Query: 1175 ATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 1231
              ++LD  S   + + L+R+ R  G T ++  H++   R   D I  ++DGRIV  G  +
Sbjct: 171  PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230

Query: 1232 EL 1233
            EL
Sbjct: 231  EL 232

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  126 bits (320), Expect = 2e-32
 Identities = 75/249 (30%), Positives = 122/249 (48%), Gaps = 32/249 (12%)

Query: 364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
            IE KN++ +YP        +D ++    G+ VA++G SG+GKST++  +    DP +G 
Sbjct: 3   MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60

Query: 424 VLLDNVDIKTL---QLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASA 479
           +L + V I  L   +LR LR  IG++ Q+  L    ++LEN+L G+              
Sbjct: 61  ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGR----------LGYT 110

Query: 480 ANAHSFITLLPN-------------GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILL 526
           +   S   L                G   +  +R   LSGGQ+QR+AIARA+++ PKI+L
Sbjct: 111 STWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIIL 170

Query: 527 LDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG 583
            DE  ++LD  S   V + L  +    G T +V  H++   +   D +  ++ G++V  G
Sbjct: 171 ADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230

Query: 584 THEELIAKA 592
              EL  +A
Sbjct: 231 PASELTDEA 239

Length = 258

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  126 bits (319), Expect = 3e-32
 Identities = 76/242 (31%), Positives = 120/242 (49%), Gaps = 32/242 (13%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN---- 420
           IE +++   Y    D    +D ++  P  K  A++G SG GKST++  + R  D      
Sbjct: 8   IEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR 64

Query: 421 -AGHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMA 471
             G VLLD  +I    + +  LR ++G+V Q+P  F  +I +N+ YG      K +    
Sbjct: 65  VEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDE 124

Query: 472 EVEAAASAANAHSFITLLPNGYSTQVGER----GVQLSGGQKQRIAIARAMLKNPKILLL 527
            VE++   A        L +    +V +R     + LSGGQ+QR+ IARA+   P++LL+
Sbjct: 125 IVESSLKKAA-------LWD----EVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLM 173

Query: 528 DEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHE 586
           DE TSALD  S   ++E +  L    T V+V H +    R  D  A    G++VE G  +
Sbjct: 174 DEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTD 233

Query: 587 EL 588
           ++
Sbjct: 234 KI 235

Length = 253

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score =  130 bits (328), Expect = 3e-32
 Identities = 84/239 (35%), Positives = 129/239 (53%), Gaps = 19/239 (7%)

Query: 380 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QL 436
           V+   D S+    G+   ++G SGSGKST+V L+ R  +P  G +L+D  DI  L   +L
Sbjct: 41  VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAEL 100

Query: 437 RWLR-DQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYS 494
           R LR  +I +V Q  AL    T+LEN+ +G     + + E    A  A   + L   GY+
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE--GYA 158

Query: 495 TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL--MVG 552
            +      +LSGG +QR+ +ARA+  +P ILL+DEA SALD    + +Q+ L  L   + 
Sbjct: 159 DK---YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK 215

Query: 553 RTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELIAK-AGAYASLIRFQEMVRNRD 609
           +T V + H L   +R  D +A+++ G++V+ GT EE++   A  Y       + VRN D
Sbjct: 216 KTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVR-----DFVRNVD 269

Length = 386

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  125 bits (317), Expect = 4e-32
 Identities = 77/242 (31%), Positives = 128/242 (52%), Gaps = 28/242 (11%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE++++   YP        KD NL I  G+  A++G SG+GKS+++  +    DPT+G++
Sbjct: 4    IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61

Query: 1070 MIDGKDIRRLN---LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGA-----------T 1114
            + +G  I +L    L+ LR  IG++ Q+  L    S+ +N+  G+ G            +
Sbjct: 62   LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121

Query: 1115 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 1174
            + +  +A  A      V  L  AY+     R   LSGGQ+QR+AIARA+++ P I+L DE
Sbjct: 122  KEDKAQALDALE---RVGILDKAYQ-----RASTLSGGQQQRVAIARALVQQPKIILADE 173

Query: 1175 ATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 1231
              ++LD ES   + + L+ + +  G T ++  H++   +   D I  ++ GRIV  G  S
Sbjct: 174  PVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPAS 233

Query: 1232 EL 1233
            EL
Sbjct: 234  EL 235

Length = 258

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  125 bits (317), Expect = 6e-32
 Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 28/244 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           I+ +NV+FSYP+  +  + ++ S     G+ VA++G +GSGKST+  ++     P +G +
Sbjct: 8   IKVENVSFSYPNSENNAL-KNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYG------KPEATMAEVEAA 476
            +D + I    L+ +R +IG++ Q P       T+ ++I +G       P+     ++  
Sbjct: 67  KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126

Query: 477 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
           A       ++   P             LSGGQKQR+AIA  +  NP+I++ DE+TS LD 
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175

Query: 537 -GSESIVQEALDRLMVGRTTVV-VAHRLSTIRNVDTVAVIQQGQVVETG------THEEL 588
            G   I +  +D     + T++ + H +      D V V  +G+++  G       ++E+
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNKEI 235

Query: 589 IAKA 592
           + KA
Sbjct: 236 LEKA 239

Length = 271

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score =  127 bits (321), Expect = 6e-32
 Identities = 69/210 (32%), Positives = 108/210 (51%), Gaps = 23/210 (10%)

Query: 1043 LVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-AS 1101
            L+G SG GK++++ L+  F  P +G +M+DG+D+   N+      I +V Q  ALF   +
Sbjct: 1    LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMT 58

Query: 1102 IFDNIAYG----KEGATE--AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 1155
            + +N+A+G    K    E    V+EA R   +  F    P+           QLSGGQ+Q
Sbjct: 59   VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPH-----------QLSGGQQQ 107

Query: 1156 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLS-TIRG 1212
            R+A+ARA++  P ILLLDE  SALD +    +Q  L+ +    G T V V H     +  
Sbjct: 108  RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167

Query: 1213 VDCIGVVQDGRIVEQGSHSELVSRPDGAYS 1242
             D I +++ G+I + G+  E+   P   + 
Sbjct: 168  SDRIAIMRKGKIAQIGTPEEIYEEPANLFV 197

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score =  123 bits (312), Expect = 6e-32
 Identities = 73/229 (31%), Positives = 118/229 (51%), Gaps = 26/229 (11%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +EL +V        +V    D NL I  G+   L+G SG GK++ + +I    +PT+G++
Sbjct: 1    VELENV---TKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG------KEGATEAEVVEAA 1122
             I G+D+  L  K  R  I +V Q  AL+   +++DNIA+G       +   +  V E A
Sbjct: 58   YIGGRDVTDLPPKD-R-DIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115

Query: 1123 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 1182
                +   +   P            QLSGGQ+QR+A+ RA+++ P + L+DE  S LDA+
Sbjct: 116  ELLQIEHLLDRKPK-----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164

Query: 1183 SECVLQEALERLMR--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQG 1228
                ++  L+RL +  G TT+ V H ++  +   D I V+ DG+I + G
Sbjct: 165  LRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score =  123 bits (311), Expect = 1e-31
 Identities = 79/214 (36%), Positives = 114/214 (53%), Gaps = 26/214 (12%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE  +V  AYP    V    D +L IR G+   L G SG+GK++++ L+     P+ G+V
Sbjct: 2    IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59

Query: 1070 MIDGKDIRRLN---LKSLRLKIGLVQQEPALFAA-SIFDNIA------YGKEGATEAEVV 1119
             I G+D+ RL    L  LR +IG+V Q+  L    ++++N+A        KE   +  V 
Sbjct: 60   RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119

Query: 1120 EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 1179
             A R       V     A   P      QLSGG++QR+AIARA++ +P +LL DE T  L
Sbjct: 120  AALRQ------VGLEHKADAFPE-----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168

Query: 1180 DAE-SECVLQEALERLMRGRTTVLVA-HRLSTIR 1211
            D + SE +L   L+RL +  TTV+VA H LS + 
Sbjct: 169  DPDLSERILD-LLKRLNKRGTTVIVATHDLSLVD 201

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score =  123 bits (311), Expect = 1e-31
 Identities = 79/228 (34%), Positives = 113/228 (49%), Gaps = 23/228 (10%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 1083
                  D NL +  G   AL+G SGSGKS+++ +I     P +G++ ++G+D  R++ + 
Sbjct: 12   SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR- 70

Query: 1084 LRLKIGLVQQEPALFA-ASIFDNIAYGKE------GATEAEVVEAARAANVHGFVSALPN 1136
               KIG V Q  ALF   ++ DNIA+G E         +A V E      + G     PN
Sbjct: 71   -DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN 129

Query: 1137 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 1196
                       QLSGGQ+QR+A+ARA+   P +LLLDE   ALDA+    L+  L +L  
Sbjct: 130  -----------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD 178

Query: 1197 --GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
                TTV V H       V D I V+ +G+I + GS  E+   P   +
Sbjct: 179  EVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  123 bits (311), Expect = 2e-31
 Identities = 75/214 (35%), Positives = 115/214 (53%), Gaps = 7/214 (3%)

Query: 1030 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA---GKVMIDGKDIRRLNLKSLRL 1086
            D N++I   +  AL+GASG GKS+ +    R  D  A   G V I+GKD++  ++ +LR 
Sbjct: 20   DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79

Query: 1087 KIGLVQQEPALFAASIFDNIAYGKE--GATEAEVVEAARAANVHGFVSALPNAYKTPVGE 1144
             +G+V Q+P +F  SI++NI+Y  +  G  + +  E A   +    V  L    K  + +
Sbjct: 80   NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKV-GLFEEVKDKLKQ 138

Query: 1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVA 1204
              + LSGGQ+QR+ IARA+   P +LLLDE TSALD  S  V++E L+ L    + ++V 
Sbjct: 139  NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVT 198

Query: 1205 HRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
            H +   + V D       G ++E G   E    P
Sbjct: 199  HNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232

Length = 246

>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR

 Score =  123 bits (310), Expect = 3e-31
 Identities = 83/259 (32%), Positives = 138/259 (53%), Gaps = 13/259 (5%)

Query: 347 SIIQDPTNGRCLDEVNGNIEFKNVTFSYPS--RPDVIIFRDFSIFFPAGKTVAVVGGSGS 404
           SI     +G  L  + G I+  ++   Y +  +P   + +    +   G+ V + G +GS
Sbjct: 4   SISGSSNSG--LVGLGGEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGS 58

Query: 405 GKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG 464
           GKS++     R  D   G +++D +DI  L L  LR ++ ++ Q+P LF+ +I  N+   
Sbjct: 59  GKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNL--- 115

Query: 465 KPEATMAE--VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 522
            PE    +  +  A   A   + +  LP G    V E G   S GQ+Q   +ARA ++  
Sbjct: 116 DPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175

Query: 523 KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET 582
            IL++DEAT+++D  +E+I+Q+ +      RT V +AHR+STI + D V V+ +G +VE 
Sbjct: 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVEC 235

Query: 583 GTHEELIA-KAGAYASLIR 600
            T E L+A + G +ASL+R
Sbjct: 236 DTPENLLAQEDGVFASLVR 254

The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score =  122 bits (309), Expect = 3e-31
 Identities = 76/250 (30%), Positives = 120/250 (48%), Gaps = 35/250 (14%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +   +V FSY   P       F +  PAG+ VA++G SG+GKST+++LI  F  P +G +
Sbjct: 2   LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG-KPEATMAE-----VEAAA 477
           L++ VD            + ++ QE  LFA  T+ +NI  G  P   +       VEAAA
Sbjct: 57  LINGVDHTASPPA--ERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114

Query: 478 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
           +      F+  LP            +LSGGQ+QR+A+AR +++   ILLLDE  SALD  
Sbjct: 115 AQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163

Query: 538 SESIVQEALDRLM-----VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 591
              +  E L  +         T ++V H       + D V  +  G++   G+ +EL++ 
Sbjct: 164 ---LRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220

Query: 592 AGAYASLIRF 601
             + A+ +  
Sbjct: 221 KAS-AAALLG 229

Length = 231

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  122 bits (308), Expect = 5e-31
 Identities = 74/226 (32%), Positives = 112/226 (49%), Gaps = 21/226 (9%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDI--RRL 1079
            +  D NL I   +  A +G SG GKS+ +    R  D        G++ IDG D+     
Sbjct: 20   ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79

Query: 1080 NLKSLRLKIGLVQQEPALFAASIFDNIAYG-------KEGATEAEVVEAARAANVHGFVS 1132
            N+  LR K+G+V Q+P  F  SI+DN+AYG       K      E+VE +  +       
Sbjct: 80   NVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTS------V 133

Query: 1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 1192
             L       + +   +LSGGQ+QR+ IARA+   P +LL+DE  SALD  +  V++  ++
Sbjct: 134  GLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQ 193

Query: 1193 RLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
             L +  T ++V H +   + V D +   Q GRIVE  +  E+   P
Sbjct: 194  ELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNP 239

Length = 251

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  122 bits (307), Expect = 5e-31
 Identities = 79/239 (33%), Positives = 128/239 (53%), Gaps = 15/239 (6%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG- 1067
            +I++R V+F Y       V K+ N+     Q  A++G SG GKS+++  + R  D  +G 
Sbjct: 4    KIKIRGVNFFYHKHQ---VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60

Query: 1068 ----KVMIDGKDIRRLNLK--SLRLKIGLVQQEPALFAASIFDNIAYGKE--GATEAEVV 1119
                 V++D ++I   NL   +LR ++G+V Q+P  F  SIFDN+A+G    G T    +
Sbjct: 61   RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRL 120

Query: 1120 EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 1179
            +     ++    +AL +  K  + + G+ LSGGQ+QR+ IAR +   P ++L+DE  SAL
Sbjct: 121  DEVVEKSLRQ--AALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSAL 178

Query: 1180 DAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
            D  S   ++E ++ L +  T  +V H +    R  D  G +  G +VE G   E+ SRP
Sbjct: 179  DPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRP 237

Length = 251

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  123 bits (310), Expect = 6e-31
 Identities = 83/273 (30%), Positives = 131/273 (47%), Gaps = 33/273 (12%)

Query: 985  STLDRSTRIDPDDPDAEP-VETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQAL 1043
              +  +T  D  DP  +P   +    IE R ++  Y    D     D ++ I   Q  A+
Sbjct: 14   GLITTTTATDTTDPSGDPAASSGETVIEARDLNVFYG---DEQALDDVSMDIPENQVTAM 70

Query: 1044 VGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRRLNLK--SLRLKIGLVQQEPA 1096
            +G SG GKS+ +  I R  D        G++   GK++   ++   +LR +IG+V Q+P 
Sbjct: 71   IGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN 130

Query: 1097 LFAASIFDNIAYG-----KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 1151
             F  SI+DN+AYG      +G  +  V E+ R A       AL +  K  +   G+ LSG
Sbjct: 131  PFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRA-------ALWDEVKDQLDSSGLDLSG 183

Query: 1152 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH------ 1205
            GQ+QR+ IARA+  +P ++L+DE  SALD  +   +++ +E L    T V+V H      
Sbjct: 184  GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAA 243

Query: 1206 RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
            R+S    V   G    G +VE     ++   P+
Sbjct: 244  RISDKTAVFLTG----GELVEFDDTDKIFENPE 272

Length = 285

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  119 bits (301), Expect = 7e-31
 Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 48/218 (22%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE +N++  Y  +       D S+    G+   ++G +G+GK+T++ +I     P++G +
Sbjct: 1   IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAH 483
            +   DIK       R +IG + +EP+L+   T+ EN+                      
Sbjct: 58  KVLGKDIKKEPEEVKR-RIGYLPEEPSLYENLTVRENL---------------------- 94

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
                              +LSGG KQR+A+A+A+L +P++L+LDE TS LD  S     
Sbjct: 95  -------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135

Query: 544 EALDRLMVGRTTVVVA-HRLSTIRNV-DTVAVIQQGQV 579
           E L  L     T++++ H L     + D VA++  G++
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score =  124 bits (314), Expect = 7e-31
 Identities = 75/219 (34%), Positives = 123/219 (56%), Gaps = 16/219 (7%)

Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL---NLKSL 1084
              + +L + AGQ   ++GASG+GKS++I  +     PT+G V++DG+D+  L    L   
Sbjct: 21   LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80

Query: 1085 RLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFV--SALPNAYKTP 1141
            R +IG++ Q   L ++ ++F N+A   E     +     +   +   V      ++Y + 
Sbjct: 81   RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPS- 139

Query: 1142 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRT 1199
                   LSGGQKQR+AIARA+  NP +LL DEATSALD  +   + E L+ + R  G T
Sbjct: 140  ------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLT 193

Query: 1200 TVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
             +L+ H +  ++ + DC+ V+ +G ++EQG+ SE+ S P
Sbjct: 194  ILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHP 232

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  122 bits (306), Expect = 8e-31
 Identities = 77/240 (32%), Positives = 120/240 (50%), Gaps = 15/240 (6%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA 1066
            +I+ R V+F Y    D    K  ++ I      A +G SG GKS+ + L  R  D  P  
Sbjct: 3    KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59

Query: 1067 ---GKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG--KEGATEAEVV 1119
               G++ IDG++I  + + +  LR  +G+V Q P  F  SIF+N+AYG    G  +   +
Sbjct: 60   RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFI 119

Query: 1120 EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 1179
                   + G  +AL +  K  + E    LSGGQ+QR+ IARA+  +P++LL+DE  SAL
Sbjct: 120  RQRVEETLKG--AALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASAL 177

Query: 1180 DAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
            D  S   ++E +  L +  T V+V H +    R  D       G +VE     ++ + P+
Sbjct: 178  DPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPE 237

Length = 250

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score =  121 bits (306), Expect = 8e-31
 Identities = 73/248 (29%), Positives = 125/248 (50%), Gaps = 40/248 (16%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E +N++  YP+       ++ ++    G+ VA++G SG+GKST++  I R  +P++G +
Sbjct: 2   LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59

Query: 425 LLDNVDIKTLQ---LRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAA 480
           LL+  DI  L+   LR LR +IG++ Q   L    T+LEN+L+G+               
Sbjct: 60  LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGR--------------L 105

Query: 481 NAHSFITLLPNGYS-----------TQVG------ERGVQLSGGQKQRIAIARAMLKNPK 523
                   L   +S            +VG      +R  QLSGGQ+QR+AIARA+ + P 
Sbjct: 106 GYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPD 165

Query: 524 ILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVV 580
           ++L DE  ++LD  +   V + L R+    G T ++  H++   +   D +  ++ G++V
Sbjct: 166 LILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225

Query: 581 ETGTHEEL 588
             G   EL
Sbjct: 226 FDGAPSEL 233

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score =  121 bits (305), Expect = 9e-31
 Identities = 80/228 (35%), Positives = 116/228 (50%), Gaps = 14/228 (6%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE +NV+  Y      +     S+    G+   ++G SG GK+T++ LI  F  P +G +
Sbjct: 1   IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAH 483
           LLD  DI    L   +  +  V Q  ALF   T+ ENI +G     + + E     A A 
Sbjct: 58  LLDGKDI--TNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
             + L   GY+     +  QLSGGQ+QR+AIARA++  PK+LLLDE   ALD      +Q
Sbjct: 116 DLVQLE--GYA---NRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQ 170

Query: 544 EALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
             L RL   +G T V V H       + D +AV+ +G++ + GT EE+
Sbjct: 171 LELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score =  122 bits (308), Expect = 9e-31
 Identities = 78/244 (31%), Positives = 122/244 (50%), Gaps = 25/244 (10%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----P 1064
            +E+R+++  Y    D     D ++RI   +  A +G SG GKS+++    R  D      
Sbjct: 26   LEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82

Query: 1065 TAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEA 1116
              G++ +DG++I  +++++  LR ++G+V Q P  F  SI++N+ YG             
Sbjct: 83   IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLD 142

Query: 1117 EVVEAA-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 1175
            E VE + R A       AL +  K  + E    LSGGQ+QR+ IARA+   P +LLLDE 
Sbjct: 143  EAVERSLRGA-------ALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEP 195

Query: 1176 TSALDAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELV 1234
            TSALD  S   ++E +  L    T V+V H +    R  D    +  G++VE G    L 
Sbjct: 196  TSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255

Query: 1235 SRPD 1238
            + P 
Sbjct: 256  TSPA 259

Length = 272

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score =  128 bits (324), Expect = 9e-31
 Identities = 80/276 (28%), Positives = 134/276 (48%), Gaps = 40/276 (14%)

Query: 994  DPDDPDAEPVETIRGEIELRHVDFAYPSRP--------DVVVFKDFNLRIRAGQSQALVG 1045
             P   DA  +      +E+  +   +P +          +      +L +R GQ+  LVG
Sbjct: 267  PPLPEDAPVL------LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVG 320

Query: 1046 ASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSLRLKIGLVQQEPALFAA-- 1100
             SGSGKS++   + R   P+ G++  DG+DI  L+   ++ LR ++ +V Q+P  + +  
Sbjct: 321  ESGSGKSTLGLALLRL-IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP--YGSLS 377

Query: 1101 ---SIFDNIAYG----KEGATEAEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGG 1152
               ++   I  G    +   + AE  +    A    G   A  N Y         + SGG
Sbjct: 378  PRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPH-------EFSGG 430

Query: 1153 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTI 1210
            Q+QRIAIARA++  P ++LLDE TSALD   +  + + L  L    G + + ++H L+ +
Sbjct: 431  QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVV 490

Query: 1211 RGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 1245
            R +   + V++DG+IVEQG    + + P   Y+R L
Sbjct: 491  RALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRAL 526

Length = 534

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score =  118 bits (299), Expect = 2e-30
 Identities = 70/222 (31%), Positives = 108/222 (48%), Gaps = 46/222 (20%)

Query: 1011 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 1070
            E+ ++   Y  R    V  D +L I AG+   ++G +G+GKS+++  +     P++G+++
Sbjct: 1    EVENLSVGYGGR---TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57

Query: 1071 IDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGF 1130
            +DGKD+  L+ K L  KI  V Q                           A     +   
Sbjct: 58   LDGKDLASLSPKELARKIAYVPQ---------------------------ALELLGLAHL 90

Query: 1131 VSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 1189
                         +R   +LSGG++QR+ +ARA+ + P ILLLDE TS LD   +  L E
Sbjct: 91   A------------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLE 138

Query: 1190 ALERLMR--GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQG 1228
             L RL R  G+T V+V H L+   R  D + +++DGRIV QG
Sbjct: 139  LLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score =  120 bits (302), Expect = 2e-30
 Identities = 79/228 (34%), Positives = 116/228 (50%), Gaps = 29/228 (12%)

Query: 1030 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089
             F+L + AG+  A++G SG+GKS+++ LI  F  P +G+++I+G D            + 
Sbjct: 17   RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS--PPAERPVS 74

Query: 1090 LVQQEPALFA-ASIFDNIAYG-----KEGATEAEVVE-AARAANVHGFVSALPNAYKTPV 1142
            ++ QE  LFA  ++  NI  G     K  A + E VE AA    + GF+  LP       
Sbjct: 75   MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG------ 128

Query: 1143 GERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD----AES-ECVLQEALERLMRG 1197
                 +LSGGQ+QR+A+AR +++   ILLLDE  SALD    AE    V Q   E   R 
Sbjct: 129  -----ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDE---RK 180

Query: 1198 RTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 1244
             T ++V H       + D +  + +GRI  QGS  EL+S    A + L
Sbjct: 181  MTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKASAAALL 228

Length = 231

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  123 bits (310), Expect = 3e-30
 Identities = 74/230 (32%), Positives = 117/230 (50%), Gaps = 13/230 (5%)

Query: 364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           +I   NV   + +        D S+   +G+ VA++G SG+GKST++ +I     P+AG 
Sbjct: 2   SIRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58

Query: 424 VLLDNVDIKTLQLRWLRD-QIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAAN 481
           + L+   +  +    +RD ++G V Q  ALF   T+ +NI +G  +        A   A 
Sbjct: 59  IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFG-LKVRKERPSEAEIRAR 117

Query: 482 AHSFITLLPNGYSTQVGER-GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
               + L+       + +R   QLSGGQ+QR+A+ARA+   PK+LLLDE   ALDA    
Sbjct: 118 VEELLRLVQ---LEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRK 174

Query: 541 IVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEE 587
            ++  L +L   +G TTV V H       + D V V+ QG++ + G  +E
Sbjct: 175 ELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDE 224

Length = 345

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score =  120 bits (304), Expect = 3e-30
 Identities = 78/239 (32%), Positives = 119/239 (49%), Gaps = 32/239 (13%)

Query: 1024 DVVVF-------KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMI 1071
            DV VF        D +L I      A +G SG GKS+ +  + R  D        GK+ +
Sbjct: 24   DVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITL 83

Query: 1072 DGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-------KEGATEAEVVEAA 1122
            DG+DI   RL++  LR ++G+V Q+P  F  SI++N+AYG       +  A   E+VE +
Sbjct: 84   DGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETS 143

Query: 1123 --RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 1180
              +A         L    K  + E G  LSGGQ+QR+ IARA+  +P ++L+DE  SALD
Sbjct: 144  LRKAG--------LWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195

Query: 1181 AESECVLQEALERLMRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
              +   ++E ++ L +  T V+V H +    R          G +VE G   ++ + PD
Sbjct: 196  PIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNPD 254

Length = 267

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score =  129 bits (327), Expect = 4e-30
 Identities = 75/240 (31%), Positives = 133/240 (55%), Gaps = 4/240 (1%)

Query: 1008 GEIELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 1066
            G I+   V   Y  RP++  V    +  I   +   +VG +G+GKSS++  + R  +   
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293

Query: 1067 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAAN 1126
            G+++IDG DI +  L  LR  +G++ Q P LF+ ++  N+    E   +A++ E+   A+
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNE-HNDADLWESLERAH 1352

Query: 1127 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 1186
            +   +          V E G   S GQ+Q +++ARA+L+   IL+LDEAT+A+D  ++ +
Sbjct: 1353 LKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1412

Query: 1187 LQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 1246
            +Q+ +    +  T +++AHRL+TI   D I V+  GR+VE  +   L+S    A+S+++Q
Sbjct: 1413 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQ 1472

Length = 1622

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score =  119 bits (300), Expect = 5e-30
 Identities = 83/241 (34%), Positives = 122/241 (50%), Gaps = 26/241 (10%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
             IE+R+V   +    D V   D +L I +G+  AL+G SGSGK++++ LI     P +G 
Sbjct: 2    SIEVRNVSKRFG---DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58

Query: 1069 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG------KEGATEAEVVEA 1121
            ++  G+D   + ++     +G V Q  ALF   ++FDN+A+G       E   EAE+   
Sbjct: 59   ILFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEI--R 114

Query: 1122 ARAANVHGFV--SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 1179
            A+   +   V    L + Y         QLSGGQ+QR+A+ARA+   P +LLLDE   AL
Sbjct: 115  AKVHELLKLVQLDWLADRYPA-------QLSGGQRQRVALARALAVEPKVLLLDEPFGAL 167

Query: 1180 DAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 1236
            DA+    L+  L RL      TTV V H       V D + V+  GRI + G+  E+   
Sbjct: 168  DAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227

Query: 1237 P 1237
            P
Sbjct: 228  P 228

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score =  125 bits (316), Expect = 5e-30
 Identities = 72/244 (29%), Positives = 123/244 (50%), Gaps = 32/244 (13%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +ELR +  ++     V      +L +R G+  AL+G +G+GKS+++ ++   Y P +G++
Sbjct: 9    LELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65

Query: 1070 MIDGKDIRRLNLK-SLRLKIGLVQQEPALFAA-SIFDNIAYGKEGAT------EAEVVEA 1121
            +IDGK +   + + +L   I  V QE +L    S+ +NI  G+E            +   
Sbjct: 66   LIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR 125

Query: 1122 ARA--ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 1179
            AR   A +   +        T VG+    LS  Q+Q + IARA+  +  +L+LDE T+AL
Sbjct: 126  ARELLARLGLDIDP-----DTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAAL 176

Query: 1180 D-AESECVLQEALERLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQG------SH 1230
               E+E +  + + RL  +G   + ++HRL  +  + D I V++DGR+V         S 
Sbjct: 177  TVKETERLF-DLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE 235

Query: 1231 SELV 1234
             ELV
Sbjct: 236  DELV 239

Length = 500

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score =  122 bits (308), Expect = 6e-30
 Identities = 71/205 (34%), Positives = 111/205 (54%), Gaps = 13/205 (6%)

Query: 393 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRWL-RDQIGLVNQ 448
           G+   ++G SGSGKST V ++ R  +P AG + +D  +I      +LR + R +IG+V Q
Sbjct: 19  GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78

Query: 449 EPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG 507
           + ALF   TIL+N   G       E E    A      + L    Y  +  +   +LSGG
Sbjct: 79  QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGL--EEYEHRYPD---ELSGG 133

Query: 508 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRL-ST 564
            +QR+ +ARA+   P ILL+DEA SALD      +Q+ L +L   + +T V + H L   
Sbjct: 134 MQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEA 193

Query: 565 IRNVDTVAVIQQGQVVETGTHEELI 589
           IR  D + +++ G++V+ GT +E++
Sbjct: 194 IRIGDRIVIMKAGEIVQVGTPDEIL 218

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score =  118 bits (299), Expect = 6e-30
 Identities = 79/236 (33%), Positives = 120/236 (50%), Gaps = 26/236 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE +NV+  +     +    D S+  P+G+ VA++G SGSGK+T++ LI     P++G +
Sbjct: 3   IEVRNVSKRFGDFVAL---DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI 59

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG---KPEATMAEVEAAASAA 480
           L    D   + ++     +G V Q  ALF   T+ +N+ +G   KP +       A   A
Sbjct: 60  LFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPP--EAEIRA 115

Query: 481 NAHSFITL-----LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD 535
             H  + L     L + Y  Q       LSGGQ+QR+A+ARA+   PK+LLLDE   ALD
Sbjct: 116 KVHELLKLVQLDWLADRYPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGALD 168

Query: 536 AGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
           A     ++  L RL   +  TTV V H       V D V V+ +G++ + GT +E+
Sbjct: 169 AKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score =  117 bits (295), Expect = 6e-30
 Identities = 68/196 (34%), Positives = 98/196 (50%), Gaps = 23/196 (11%)

Query: 1019 YPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK--DI 1076
            YP  P+V+  K  N     G+  AL+GA+G+GKS+++  +     P +G V+IDG+  D 
Sbjct: 1    YPGGPEVL--KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58

Query: 1077 RRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYG------KEGATEAEVVEAARAANVH 1128
             R  L   R ++GLV Q+P   LFAA +  ++A+G       E   E  V EA  A    
Sbjct: 59   SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS 118

Query: 1129 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 1188
            G      +            LSGG+K+R+AIA AV   P +LLLDE T+ LD      + 
Sbjct: 119  GLRERPTH-----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167

Query: 1189 EALERLMRGRTTVLVA 1204
              L RL     TV+++
Sbjct: 168  AILRRLRAEGMTVVIS 183

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score =  118 bits (297), Expect = 1e-29
 Identities = 75/237 (31%), Positives = 116/237 (48%), Gaps = 29/237 (12%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           I F+NV+ +YP   +    RD S   P G+ V + G SG+GKST++ LI     P  G +
Sbjct: 2   IRFENVSKAYPGGRE--ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59

Query: 425 LLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILY-----GKPEATMAE-VE 474
           L++  D+  L   ++ +LR QIG+V Q+  L    T+ EN+       GKP   +   V 
Sbjct: 60  LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119

Query: 475 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
                         LP+           QLSGG++QR+AIARA++  P +LL DE T  L
Sbjct: 120 EVLDLVGLKHKARALPS-----------QLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168

Query: 535 D-AGSESIVQ--EALDRLMVGRTTVVVAHRLSTIRNVDT-VAVIQQGQVVETGTHEE 587
           D   S  I++  E ++RL  G T ++  H L  +  +   V  ++ G++V   +   
Sbjct: 169 DPDLSWEIMRLFEEINRL--GTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRGV 223

Length = 223

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score =  117 bits (295), Expect = 1e-29
 Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 20/213 (9%)

Query: 1028 FKDFNLRIR---AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK---DIRR-LN 1080
              DF L+I      +   + GASG+GKS+++  I     P  G ++++G    D R+ +N
Sbjct: 10   LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69

Query: 1081 LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYK 1139
            L   + KIGLV Q+ ALF   ++ +N+A+G +     E   +         +  L     
Sbjct: 70   LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDE------LLDLLGL-- 121

Query: 1140 TPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-- 1196
              +  R   QLSGG+KQR+A+ARA+   P +LLLDE  SALD      L   L+++ +  
Sbjct: 122  DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL 181

Query: 1197 GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQG 1228
                + V H LS      D I V++DGR+   G
Sbjct: 182  NIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score =  115 bits (290), Expect = 1e-29
 Identities = 65/215 (30%), Positives = 90/215 (41%), Gaps = 60/215 (27%)

Query: 366 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 425
           E +N++F Y  R       + S+   AG+ VA+VG +GSGKST++  I     P +G +L
Sbjct: 1   EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57

Query: 426 LDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSF 485
           +D  DI  L L  LR +IG V Q                                     
Sbjct: 58  IDGKDIAKLPLEELRRRIGYVPQ------------------------------------- 80

Query: 486 ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEA 545
                   S   G+R       Q+  +A  RA+L NP +LLLDE TS LD  S   + E 
Sbjct: 81  -------LSG--GQR-------QRVALA--RALLLNPDLLLLDEPTSGLDPASRERLLEL 122

Query: 546 LDRLMV-GRTTVVVAHRLSTIRNV-DTVAVIQQGQ 578
           L  L   GRT ++V H         D V V++ G+
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  118 bits (299), Expect = 2e-29
 Identities = 68/235 (28%), Positives = 124/235 (52%), Gaps = 22/235 (9%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            I++ +V F+YP+  +    K+ +  I  G+  A++G +GSGKS++  ++     P +G++
Sbjct: 8    IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE------GATEAEVVEA 1121
             IDG  I + NLK +R KIG++ Q P      A++ D+IA+G E         +  + + 
Sbjct: 67   KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126

Query: 1122 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
            A+   +  ++   P             LSGGQKQR+AIA  +  NP I++ DE+TS LD 
Sbjct: 127  AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175

Query: 1182 ESECVLQEALERLMRGRTTVLVA--HRLSTIRGVDCIGVVQDGRIVEQGSHSELV 1234
            + +  +++ +  L + R   L++  H +      D + V  +G+++ QG   E++
Sbjct: 176  KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEIL 230

Length = 271

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score =  120 bits (302), Expect = 2e-29
 Identities = 77/236 (32%), Positives = 123/236 (52%), Gaps = 17/236 (7%)

Query: 365 IEFKNVT-FSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           I+  N+T   +     +    + S+  PAG+   V+G SG+GKST++  +     P +G 
Sbjct: 2   IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61

Query: 424 VLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASA 479
           V++D  D+ TL   +L   R QIG++ Q   L ++ T+  N+      A   E++     
Sbjct: 62  VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNV------ALPLELDNT-PK 114

Query: 480 ANAHSFITLLPN--GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
                 +T L    G   +       LSGGQKQR+AIARA+  NPK+LL DEATSALD  
Sbjct: 115 DEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174

Query: 538 SESIVQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 590
           +   + E L  +   +G T +++ H +  ++ + D VAVI  G+++E GT  E+ +
Sbjct: 175 TTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score =  118 bits (297), Expect = 3e-29
 Identities = 65/238 (27%), Positives = 103/238 (43%), Gaps = 55/238 (23%)

Query: 365 IEFKNVTFSYPSR------PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD 418
           +E KN+   +P          V      S     G+T+ +VG SG GKST+  LI    +
Sbjct: 5   LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64

Query: 419 PNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAAS 478
           P +G +L +  DI  L     R+++                          + +V     
Sbjct: 65  PTSGEILFEGKDITKLSKEERRERV-----------------------LELLEKVGLPEE 101

Query: 479 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 538
               +                   +LSGGQ+QRI IARA+  NPK+++ DE  SALD   
Sbjct: 102 FLYRYPH-----------------ELSGGQRQRIGIARALALNPKLIVADEPVSALDV-- 142

Query: 539 ESIVQEALDRLM-----VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 590
            S+  + L+ L      +G T + ++H LS +R + D +AV+  G++VE G  EE+ +
Sbjct: 143 -SVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199

Length = 268

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score =  116 bits (292), Expect = 3e-29
 Identities = 58/210 (27%), Positives = 102/210 (48%), Gaps = 36/210 (17%)

Query: 368 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 427
           KN++  +  +   +I  D ++    GK  A++G SGSGKST++++I      ++G V L+
Sbjct: 2   KNISKKFGDK---VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN 58

Query: 428 NVDIKTLQLR----WLRDQIGLVNQEPALFAT-TILENILYG-----KPEATMAEVEAAA 477
             +   L  +    + R+++G + Q  AL    T+ EN+  G       +    E     
Sbjct: 59  GQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKRE----- 113

Query: 478 SAANAHSFITLLPNGYSTQVG-----ERGV-QLSGGQKQRIAIARAMLKNPKILLLDEAT 531
                             +VG     ++ + +LSGG++QR+A+ARA+LK P ++L DE T
Sbjct: 114 -----------KKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPT 162

Query: 532 SALDAGSESIVQEALDRLM-VGRTTVVVAH 560
            +LD  +   V + L  L   G+T ++V H
Sbjct: 163 GSLDPKNRDEVLDLLLELNDEGKTIIIVTH 192

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  123 bits (311), Expect = 4e-29
 Identities = 72/255 (28%), Positives = 116/255 (45%), Gaps = 43/255 (16%)

Query: 365 IEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA-- 421
           +E +N+T  + +    V   RD S     G+ + +VG SGSGKST+   +          
Sbjct: 6   LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65

Query: 422 --GHVLLDNVDIKTL---QLRWLR-DQIGLVNQEP-ALF--ATTILENI-----LYGKPE 467
             G V+LD  D+  L   ++R LR  +I ++ Q+P        TI + I     L+GK  
Sbjct: 66  TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125

Query: 468 ATMAEVEAAA--------SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML 519
              A   A                 +    P+           QLSGG +QR+ IA A+ 
Sbjct: 126 RAEARKRAVELLEQVGLPDPERRDRY----PH-----------QLSGGMRQRVMIAMALA 170

Query: 520 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNV-DTVAVIQQ 576
             PK+L+ DE T+ALD  +++ + + L  L    G   + + H L  +  + D V V+ +
Sbjct: 171 LKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYK 230

Query: 577 GQVVETGTHEELIAK 591
           G++VETG  EE+++ 
Sbjct: 231 GEIVETGPTEEILSN 245

Length = 539

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score =  120 bits (303), Expect = 4e-29
 Identities = 81/229 (35%), Positives = 126/229 (55%), Gaps = 25/229 (10%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL---- 1084
            KD +L I  G+   ++G SGSGKS+++ L+ R  +PT G+V+IDG DI +++   L    
Sbjct: 45   KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR 104

Query: 1085 RLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAE----VVEAARAANVHGFVSALPNA 1137
            R KI +V Q  AL    ++ DN A+G E  G    E     ++A R   +  +  + P+ 
Sbjct: 105  RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD- 163

Query: 1138 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-- 1195
                      +LSGG +QR+ +ARA+  NP ILL+DEA SALD      +Q+ L +L   
Sbjct: 164  ----------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAK 213

Query: 1196 RGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 1243
              RT V ++H L   +R  D I ++Q+G +V+ G+  E+++ P   Y R
Sbjct: 214  HQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262

Length = 400

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  116 bits (293), Expect = 4e-29
 Identities = 77/229 (33%), Positives = 115/229 (50%), Gaps = 22/229 (9%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PT---AGKVMIDGKDI-- 1076
            D  + K+ NL I      AL+G SG GKS+ I  + R  D  P     G + +DG DI  
Sbjct: 15   DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74

Query: 1077 RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-------KEGATEAEVVEAARAANVHG 1129
              +++  LR K+G+V Q+P  F  SIFDN+AYG        E   E  V E+ +AA    
Sbjct: 75   PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAA---- 130

Query: 1130 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 1189
               AL +  K  + +  + LSGGQ+QR+ IAR +  +P ++L+DE  SALD  S   +++
Sbjct: 131  ---ALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED 187

Query: 1190 ALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
             + +L    T V+V H +    R         +G I+E G   ++   P
Sbjct: 188  LIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINP 236

Length = 250

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score =  118 bits (299), Expect = 6e-29
 Identities = 73/236 (30%), Positives = 114/236 (48%), Gaps = 30/236 (12%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E KNV  S+       + +D ++    G+ V ++G SG GKST++ +I    +P +G +
Sbjct: 4   LELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYG------KPEATMAEVEAAA 477
           L+D  D+  L     R  I +V Q  AL+   T+ ENI +G              V+  A
Sbjct: 61  LIDGRDVTDLP-PEKRG-IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118

Query: 478 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
                   +   P            QLSGGQ+QR+A+ARA+++ PK+ LLDE  S LDA 
Sbjct: 119 KLLGLEHLLNRKPL-----------QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167

Query: 538 SE----SIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
                 S +++  +RL  G TT+ V H       + D + V+  G++ + GT  EL
Sbjct: 168 LRVLMRSEIKKLHERL--GTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLEL 221

Length = 338

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  116 bits (292), Expect = 6e-29
 Identities = 71/224 (31%), Positives = 116/224 (51%), Gaps = 20/224 (8%)

Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDI--RRLN 1080
              D NL I   +  AL+G SG GKS+ +  + R  D        G+V++DGK+I  + ++
Sbjct: 20   LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79

Query: 1081 LKSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEVVEAARAANVHGFVSAL 1134
            +  LR ++G+V Q+P  F  SI+DN+AYG      K+     ++VE A         +AL
Sbjct: 80   VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKK------AAL 133

Query: 1135 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 1194
             +  K  + +  ++LSGGQ+QR+ IAR +   P ++L+DE TSALD  S   +++ +  L
Sbjct: 134  WDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL 193

Query: 1195 MRGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRP 1237
             +  T V+V H +    R  D       G ++E     ++   P
Sbjct: 194  KKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEP 237

Length = 251

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  116 bits (293), Expect = 6e-29
 Identities = 68/259 (26%), Positives = 114/259 (44%), Gaps = 37/259 (14%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE +N+T SY +RP   +  D S+    G+  A++G +G+GKST++  I     P++G +
Sbjct: 5   IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPAL---FATTILE----------NILYGKPEATMA 471
            +    ++  + + LR  IG V Q+ ++   F  T+ +                 +    
Sbjct: 62  KIFGKPVRK-RRKRLR--IGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118

Query: 472 EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT 531
           +V+ A                   Q+GE    LSGGQKQR+ +ARA+ +NP +LLLDE  
Sbjct: 119 KVDEALERVGMEDLR-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPF 167

Query: 532 SALDAGSESIVQEALDRL-MVGRTTVVVAHRLST-IRNVDTVAVIQQ-----GQVVETGT 584
           + +D   +  + + L  L   G+T ++V H L   +   D V  + +     G   E  T
Sbjct: 168 TGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLT 227

Query: 585 HEELIAKAGAYASLIRFQE 603
            E L    G   +      
Sbjct: 228 EENLEKAFGGSLAHALAGY 246

Length = 254

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score =  115 bits (289), Expect = 7e-29
 Identities = 68/205 (33%), Positives = 109/205 (53%), Gaps = 23/205 (11%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE  +V   YP           N+ I AG+   LVG SG+GKS+++ LI +   PT+G +
Sbjct: 1    IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58

Query: 1070 MIDGKDIRRLNLKS---LRLKIGLVQQEPALFAA-SIFDNIAYGKE--GATEAE----VV 1119
             ++G+D+  L  ++   LR KIG+V Q+  L    ++++N+A+  E  G    E    V 
Sbjct: 59   RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118

Query: 1120 EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 1179
             A     +     ALP            +LSGG++QR+AIARA++ +P IL+ DE T  L
Sbjct: 119  AALELVGLSHKHRALPA-----------ELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167

Query: 1180 DAESECVLQEALERLMRGRTTVLVA 1204
            D ++   +   L+++ +  TTV+VA
Sbjct: 168  DPDTTWEIMNLLKKINKAGTTVVVA 192

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score =  116 bits (292), Expect = 1e-28
 Identities = 72/248 (29%), Positives = 112/248 (45%), Gaps = 55/248 (22%)

Query: 1010 IELRHVDFAYPSR------PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 1063
            +E++++   +P          V      +  I+ G++  LVG SG GKS++  LI    +
Sbjct: 5    LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64

Query: 1064 PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAAR 1123
            PT+G+++ +GKDI +L+                             KE   E  V+E   
Sbjct: 65   PTSGEILFEGKDITKLS-----------------------------KEERRE-RVLELLE 94

Query: 1124 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
               +          Y+ P      +LSGGQ+QRI IARA+  NP +++ DE  SALD   
Sbjct: 95   KVGLPEEF-----LYRYPH-----ELSGGQRQRIGIARALALNPKLIVADEPVSALDVS- 143

Query: 1184 ECVLQEALERLM-----RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
              V  + L  L       G T + ++H LS +R + D I V+  G+IVE G   E+ S P
Sbjct: 144  --VQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201

Query: 1238 DGAYSRLL 1245
               Y++ L
Sbjct: 202  LHPYTKAL 209

Length = 268

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score =  115 bits (290), Expect = 1e-28
 Identities = 82/244 (33%), Positives = 128/244 (52%), Gaps = 25/244 (10%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA 1066
            ++E R + F Y    D     D +L     Q  AL+G SG GKS+ +  + R  D  P A
Sbjct: 6    KMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGA 62

Query: 1067 ---GKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATE 1115
               G++++DG++I    +++  LR ++G+V Q+P  F  SIF+N+AYG      K+ A  
Sbjct: 63   RVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYL 122

Query: 1116 AEVVEAA-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 1174
            AE VE + R A       AL +  K  + E  + LSGGQ+QR+ IARA+   P +LL+DE
Sbjct: 123  AERVERSLRHA-------ALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDE 175

Query: 1175 ATSALDAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSEL 1233
              SALD  +   ++E +  L    T ++V H +    R  D       G+++E G   ++
Sbjct: 176  PASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235

Query: 1234 VSRP 1237
             +RP
Sbjct: 236  FTRP 239

Length = 253

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  116 bits (292), Expect = 1e-28
 Identities = 76/244 (31%), Positives = 127/244 (52%), Gaps = 17/244 (6%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE++++ F Y    +     D +  ++ G+  +++G +GSGKS+ + LI+   +  +G++
Sbjct: 5    IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAEVVEAARAA 1125
            +IDG  +   N+  +R KIG+V Q P      A++ D++A+G E  G    E+ E  R  
Sbjct: 65   IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKE--RVN 122

Query: 1126 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 1185
                 V       + P      +LSGGQKQR+AIA AV   P I++LDEATS LD E   
Sbjct: 123  EALELVGMQDFKEREP-----ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRL 177

Query: 1186 VLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 1243
             L + ++ +      T + + H L  +   D + V+++G++    +  EL SR +     
Sbjct: 178  ELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGN----D 233

Query: 1244 LLQL 1247
            LLQL
Sbjct: 234  LLQL 237

Length = 279

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score =  115 bits (289), Expect = 2e-28
 Identities = 72/226 (31%), Positives = 111/226 (49%), Gaps = 22/226 (9%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA-----GKVMIDGKDIRR--LNL 1081
            K  +++    +  AL+G SGSGKS+ +  + R  D        G+++  G DI R  +N+
Sbjct: 37   KGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96

Query: 1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEA------EVVEAA-RAANVHGFVSAL 1134
              +R  IG+V Q P  FA SI++NI +  E A         E+VE + + A       AL
Sbjct: 97   YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQA-------AL 149

Query: 1135 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 1194
             +  K  + +  + LSGGQ+QR+ IARA+   P ILL+DE  SALD  S   L+E +  L
Sbjct: 150  WDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL 209

Query: 1195 MRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPDG 1239
             +  T ++V H +    R  D       G ++E      + + P  
Sbjct: 210  KKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNPKL 255

Length = 267

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score =  114 bits (288), Expect = 3e-28
 Identities = 76/255 (29%), Positives = 119/255 (46%), Gaps = 25/255 (9%)

Query: 352 PTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVS 411
                 +      I+ +N+ F Y         ++ ++     +  A +G SG GKST++ 
Sbjct: 1   AAMMSMVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLR 57

Query: 412 LIERFYD--PN---AGHVLLDNVDIKT--LQLRWLRDQIGLVNQEPALFATTILENILYG 464
              R Y+  P     G +LLD  +I T    +  LR ++G+V Q+P  F  +I +NI +G
Sbjct: 58  TFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFG 117

Query: 465 K------PEATMAE-VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 517
                    A M E VE A + A        L N    ++ + G  LSGGQ+QR+ IAR 
Sbjct: 118 VRLFEKLSRAEMDERVEWALTKA-------ALWNEVKDKLHQSGYSLSGGQQQRLCIARG 170

Query: 518 MLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL-STIRNVDTVAVIQQ 576
           +   P++LLLDE  SALD  S   ++E +  L    T V+V H +    R  D  A +  
Sbjct: 171 IAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYL 230

Query: 577 GQVVETGTHEELIAK 591
           G+++E G  + +  K
Sbjct: 231 GELIEFGNTDTIFTK 245

Length = 260

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score =  114 bits (287), Expect = 3e-28
 Identities = 73/242 (30%), Positives = 130/242 (53%), Gaps = 28/242 (11%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +E+ ++   YP+       K+ NL I  G+  A++G SG+GKS+++  I R  +P++G +
Sbjct: 2    LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59

Query: 1070 MIDGKDIRRLN---LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGA-----------T 1114
            +++G DI +L    L+ LR +IG++ Q   L    ++ +N+ +G+ G            +
Sbjct: 60   LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119

Query: 1115 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 1174
            E +   A  A      V     AY+     R  QLSGGQ+QR+AIARA+ + P ++L DE
Sbjct: 120  EEDKERALSALER---VGLADKAYQ-----RADQLSGGQQQRVAIARALAQQPDLILADE 171

Query: 1175 ATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 1231
              ++LD ++   + + L+R+ +  G T ++  H++   +   D I  ++ G IV  G+ S
Sbjct: 172  PIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231

Query: 1232 EL 1233
            EL
Sbjct: 232  EL 233

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  114 bits (287), Expect = 3e-28
 Identities = 68/223 (30%), Positives = 116/223 (52%), Gaps = 20/223 (8%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIR--RLNL 1081
             D  + I   +  AL+G SG GKS+++    R  D        G ++ +G++I     ++
Sbjct: 23   YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82

Query: 1082 KSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEVVEAARAANVHGFVSALP 1135
             +LR KIG+V Q P  F  SI++N+AYG      K   T   +VE +    + G  +AL 
Sbjct: 83   VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKS----LKG--AALW 136

Query: 1136 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 1195
            +  K  + +  + LSGGQ+QR+ IAR +  NP ++L+DE  SALD  +   +++ +E L 
Sbjct: 137  DEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK 196

Query: 1196 RGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
            +  T ++V H +    R  D  G +  G+++E    +++   P
Sbjct: 197  KEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENP 239

Length = 253

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score =  114 bits (286), Expect = 4e-28
 Identities = 74/234 (31%), Positives = 110/234 (47%), Gaps = 26/234 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE  N++  +          D ++  P G  VA++G SGSGKST++ +I     P++G +
Sbjct: 1   IEIANISKRFG---SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI 57

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG------KPEATMAEVEAAA 477
            L+  D   +  R    +IG V Q  ALF   T+ +NI +G            A VE   
Sbjct: 58  RLNGQDATRVHAR--DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELL 115

Query: 478 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
                       PN           QLSGGQ+QR+A+ARA+   P++LLLDE   ALDA 
Sbjct: 116 ELVQLEGLGDRYPN-----------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164

Query: 538 SESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
               ++  L +L   V  TTV V H       V D + V+  G++ + G+ +E+
Sbjct: 165 VRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score =  112 bits (283), Expect = 4e-28
 Identities = 67/197 (34%), Positives = 100/197 (50%), Gaps = 29/197 (14%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPTAGKVMIDGKDIRRLN 1080
            D V+  D NL I  G+  A++G SGSGKS+   +I L+E+F     G+V ++G++   LN
Sbjct: 10   DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDS---GQVYLNGQETPPLN 66

Query: 1081 LKS----LRLKIGLVQQEPALF-AASIFDNI----AYGKEGATEAE--VVEAARAANVHG 1129
             K      R K+G + Q  AL    ++ +N+     Y K    E      EA        
Sbjct: 67   SKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG--- 123

Query: 1130 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE-SECVLQ 1188
                L    K  + E    LSGG++QR+A+ARA+LK P ++L DE T +LD +  + VL 
Sbjct: 124  ----LNLKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLD 175

Query: 1189 EALERLMRGRTTVLVAH 1205
              LE    G+T ++V H
Sbjct: 176  LLLELNDEGKTIIIVTH 192

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  114 bits (288), Expect = 5e-28
 Identities = 77/224 (34%), Positives = 114/224 (50%), Gaps = 22/224 (9%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDI--RRLNL 1081
            K  N  I +    A++G SG GKS+ +  I R  D      T G +M DG+DI  +  + 
Sbjct: 56   KKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115

Query: 1082 KSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEVVEAA-RAANVHGFVSAL 1134
              LR KIG+V Q+P  F  SIFDNIAYG       +     E+VE + R A       AL
Sbjct: 116  VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKA-------AL 168

Query: 1135 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 1194
             +     + +  + LSGGQ+QR+ +AR +   P ILLLDE TSALD ++   +++ ++ L
Sbjct: 169  WDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL 228

Query: 1195 MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
                T ++V H +     V D      +G +VE    ++L + P
Sbjct: 229  RGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNP 272

Length = 286

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score =  113 bits (285), Expect = 5e-28
 Identities = 77/253 (30%), Positives = 129/253 (50%), Gaps = 29/253 (11%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE ++V   +       V  + +L I  G+   ++G SGSGKS+++  I +  + T+G +
Sbjct: 2    IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58

Query: 1070 MIDGKDIR--RLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGK---EGATEAEVVEAAR 1123
            ++DG  +   +++ + +R + G+V Q+  LF   +  +N+ +G     GA++ E  + AR
Sbjct: 59   IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAR 118

Query: 1124 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
                   ++   + Y +       +LSGGQ+QR+AIARA+   P ++L DE TSALD E 
Sbjct: 119  ELLAKVGLAERAHHYPS-------ELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE- 170

Query: 1184 ECVLQEALERLMR-----GRTTVLVAHRLSTIRGVDCIGVVQD-GRIVEQGSHSELVSRP 1237
              +  E L ++M+     G T V+V H +     V    +  D GRI E G    L+  P
Sbjct: 171  --LRHEVL-KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227

Query: 1238 DGAYSRLLQ-LQH 1249
                 RL + LQH
Sbjct: 228  PSQ--RLQEFLQH 238

Length = 240

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score =  117 bits (293), Expect = 6e-28
 Identities = 78/246 (31%), Positives = 115/246 (46%), Gaps = 18/246 (7%)

Query: 1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP--T 1065
            G I + H+  AY +     V  D +L I AG+  AL+G SG GK++++  I  F      
Sbjct: 4    GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60

Query: 1066 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARA 1124
             G++ I  +D+   +    +  + L+ Q  ALF    + DN+A+G       +   A R 
Sbjct: 61   TGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118

Query: 1125 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 1184
            A+    V     A   P      QLSGG +QRIAIARA+   P +LLLDE  SALDA   
Sbjct: 119  ADALKLVGLGDAAAHLPA-----QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIR 173

Query: 1185 CVLQEALERLMR---GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP-DG 1239
              ++E +  L       T + V H +   +   D  G+++DGR+   G    L   P DG
Sbjct: 174  ANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADG 233

Query: 1240 AYSRLL 1245
              +  L
Sbjct: 234  FAAEFL 239

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  114 bits (288), Expect = 6e-28
 Identities = 73/214 (34%), Positives = 116/214 (54%), Gaps = 16/214 (7%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI--RRLNLKSLRL 1086
             + N+ I  G+   L+G +GSGKS++I  +     PT+GK++IDG DI  +++ L  +R 
Sbjct: 24   DNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRK 83

Query: 1087 KIGLVQQEP--ALFAASIFDNIAYGKE--GATEAEVVEAARAA-NVHGFVSALPNAYKTP 1141
            K+GLV Q P   LF  +I  +IA+G    G +E E+    + A N+ G        Y+  
Sbjct: 84   KVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGL------DYEDY 137

Query: 1142 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRT 1199
              +   +LSGGQK+R+AIA  V   P IL+LDE T+ LD +    +   ++ L +    T
Sbjct: 138  KDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMT 197

Query: 1200 TVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSE 1232
             +LV+H +  + +  D I V+  G+   QG+  E
Sbjct: 198  IILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231

Length = 287

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score =  112 bits (283), Expect = 1e-27
 Identities = 77/249 (30%), Positives = 117/249 (46%), Gaps = 33/249 (13%)

Query: 362 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--P 419
            G I  K++   Y    D    +  ++     +  A++G SG GKST +  + R  D  P
Sbjct: 1   MGKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP 57

Query: 420 NA---GHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEA 468
           +    G VLLD  DI    + +  LR ++G+V Q+P  F  +I +N+ YG      K + 
Sbjct: 58  SVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKK 117

Query: 469 TMAE-VEAAASAANAHSFITLLPNGYSTQVGER----GVQLSGGQKQRIAIARAMLKNPK 523
            + E VE +   A               +V +R     + LSGGQ+QR+ IARA+   P+
Sbjct: 118 KLDEIVEKSLKGA-----------ALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPE 166

Query: 524 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL-STIRNVDTVAVIQQGQVVET 582
           +LL+DE TSALD  S   ++E +  L    T V+V H +    R  D  A    G++VE 
Sbjct: 167 VLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEF 226

Query: 583 GTHEELIAK 591
           G   +L   
Sbjct: 227 GDTVDLFTN 235

Length = 250

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score =  115 bits (290), Expect = 2e-27
 Identities = 79/216 (36%), Positives = 121/216 (56%), Gaps = 17/216 (7%)

Query: 384 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRWLR 440
           +D S+    G+   ++G SGSGKST+V L+ R  +P  G VL+D VDI  +   +LR +R
Sbjct: 45  KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR 104

Query: 441 -DQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITL--LPNGYSTQ 496
             +I +V Q  AL    T+L+N  +G   A +   E    A +A   + L    + Y  +
Sbjct: 105 RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDE 164

Query: 497 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG--RT 554
                  LSGG +QR+ +ARA+  NP ILL+DEA SALD    + +Q+ L +L     RT
Sbjct: 165 -------LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRT 217

Query: 555 TVVVAHRL-STIRNVDTVAVIQQGQVVETGTHEELI 589
            V ++H L   +R  D +A++Q G+VV+ GT +E++
Sbjct: 218 IVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253

Length = 400

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  113 bits (285), Expect = 2e-27
 Identities = 78/241 (32%), Positives = 120/241 (49%), Gaps = 21/241 (8%)

Query: 365 IEFKNVTFSY----PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
           I F NV+++Y    P     I   D +  F  GK  A+VG +GSGKST++  I     P 
Sbjct: 3   IRFDNVSYTYQKGTPYEHQAI--HDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT 60

Query: 421 AGHVLLDNVDI----KTLQLRWLRDQIGLVNQ--EPALFATTILENILYGKPEATMAEVE 474
            G V +D++ I    K   +R +R +IG+V Q  E  LF  T+   I++G     M   E
Sbjct: 61  TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDE 120

Query: 475 AAASAANAHSFITLLPNGYSTQVGERG-VQLSGGQKQRIAIARAMLKNPKILLLDEATSA 533
               A        L+  G+S  V  +   Q+SGGQ ++IAI   +  NP I++LDE T+ 
Sbjct: 121 VKNYA-----HRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175

Query: 534 LDAGSESIVQEALDRLMV--GRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELIA 590
           LD  S+  V   L  L     +T ++V+H ++ + R  D V V+++G +V   + +EL  
Sbjct: 176 LDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235

Query: 591 K 591
            
Sbjct: 236 D 236

Length = 286

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  113 bits (284), Expect = 2e-27
 Identities = 78/256 (30%), Positives = 130/256 (50%), Gaps = 30/256 (11%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +E R + ++YP        K  N +   G+  AL+G +G+GKS++         PT+G+V
Sbjct: 2    LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59

Query: 1070 MIDGKDIRRLNLKSL---RLKIGLVQQEP--ALFAASIFDNIAYG------KEGATEAEV 1118
            +I G+ I+    KSL   R  +G+V Q P   LFA ++ +++A+G       +   E  V
Sbjct: 60   LIKGEPIKYDK-KSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV 118

Query: 1119 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
             EA +A  + GF +  P+            LSGGQK+R+AIA  +   P I++LDE TS 
Sbjct: 119  KEALKAVGMEGFENKPPH-----------HLSGGQKKRVAIAGILAMKPEIIVLDEPTSG 167

Query: 1179 LDAESECVLQEALERLMR-GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSR 1236
            LD      + + L  L + G T ++  H +  +    D + V+ DG+I+++G+  E+ S 
Sbjct: 168  LDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227

Query: 1237 PD---GAYSRLLQLQH 1249
             +    A  RL ++ H
Sbjct: 228  IETIRKANLRLPRVAH 243

Length = 275

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score =  107 bits (270), Expect = 2e-27
 Identities = 53/129 (41%), Positives = 71/129 (55%), Gaps = 13/129 (10%)

Query: 407 STVVSLIERFYDPNAGHVLLDNVDIKTL-QLRWLRDQIGLVNQEPALFAT-TILENILYG 464
           ST++ LI     P +G +LLD  D   L   + LR +IG+V Q+P LF   T+ EN+ +G
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60

Query: 465 -KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 523
            + +   A  E A        F+   P G           LSGGQKQR+AIARA+LK PK
Sbjct: 61  LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110

Query: 524 ILLLDEATS 532
           +LLLDE T+
Sbjct: 111 LLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score =  112 bits (282), Expect = 2e-27
 Identities = 76/228 (33%), Positives = 114/228 (50%), Gaps = 50/228 (21%)

Query: 392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL-------------QLRW 438
           AG  ++++G SGSGKST +  I     P+AG + ++  +I+               QL+ 
Sbjct: 31  AGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQR 90

Query: 439 LRDQIGLVNQEPALFA-TTILENIL------YGKPEATMAEVEAAASAANAHSFITLLPN 491
           LR ++G+V Q   L++  T+LEN++       G  +A     EA   A            
Sbjct: 91  LRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKA-----EAIERA-----------E 134

Query: 492 GYSTQVG--ERG----VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEA 545
            Y  +VG  E+       LSGGQ+QR+AIARA+   P+++L DE TSALD     +V E 
Sbjct: 135 KYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP---ELVGEV 191

Query: 546 L----DRLMVGRTTVVVAHRLSTIRNVDT-VAVIQQGQVVETGTHEEL 588
           L    D    GRT VVV H +   R+V + V  + QG++ E G  E++
Sbjct: 192 LKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQV 239

Length = 256

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score =  113 bits (286), Expect = 2e-27
 Identities = 74/261 (28%), Positives = 118/261 (45%), Gaps = 44/261 (16%)

Query: 1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL-IERFYDP-----TAG 1067
             V F   +     V    +  ++ G+   +VG SGSGKS V+A  I             G
Sbjct: 8    SVSFPTDAGVVKAV-DGVSFELKKGEILGIVGESGSGKS-VLAKAIMGLLPKPNARIVGG 65

Query: 1068 KVMIDGKDIRRLNLKSLRL----KIGLVQQEPALFAAS----------IFDNIAYGKEGA 1113
            +++ DGKD+  L+ K LR     +I ++ Q+P     S          I + +    +G 
Sbjct: 66   EILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM---TSLNPVMTIGDQIAEVLRLHGKGL 122

Query: 1114 TEAEVVEAARAA--NVHGFVSALPNAYKT----PVGERGVQLSGGQKQRIAIARAVLKNP 1167
            ++ E  E A      V      +P+  +     P      +LSGG +QR+ IA A+  NP
Sbjct: 123  SKKEAKERAIELLELVG-----IPDPERRLKSYPH-----ELSGGMRQRVMIAMALALNP 172

Query: 1168 AILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRI 1224
             +L+ DE T+ALD   +  + + L+ L R  G   +L+ H L  +  + D + V+  GRI
Sbjct: 173  KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRI 232

Query: 1225 VEQGSHSELVSRPDGAYSRLL 1245
            VE+G   E+   P   Y+R L
Sbjct: 233  VEEGPVEEIFKNPKHPYTRGL 253

Length = 316

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score =  111 bits (280), Expect = 3e-27
 Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 22/235 (9%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IEFKNV+  +       +  +  +    G+ V ++G SGSGKST++  I +  +  +G +
Sbjct: 2   IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58

Query: 425 LLDNVDIK--TLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAAN 481
           ++D + +    +  R +R + G+V Q+  LF   T LEN+++G      A  E A   A 
Sbjct: 59  IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAR 118

Query: 482 AHSFITLLPN-GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
                 LL   G + +      +LSGGQ+QR+AIARA+   PK++L DE TSALD     
Sbjct: 119 E-----LLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP---E 170

Query: 541 IVQEALDRLMV-----GRTTVVVAHRLSTIRNVDT-VAVIQQGQVVETGTHEELI 589
           +  E L ++M      G T V+V H +     V + +  I +G++ E G  + LI
Sbjct: 171 LRHEVL-KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224

Length = 240

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score =  119 bits (301), Expect = 4e-27
 Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 18/229 (7%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA-GH 423
           I  KN  FS+ S+ +     + ++  P G  VA+VG +G GK++++S +     P +   
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674

Query: 424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP-EATMAEVEAAASAANA 482
           V++             R  +  V Q   +F  T+ +NIL+G P +      E A      
Sbjct: 675 VVI-------------RGTVAYVPQVSWIFNATVRDNILFGSPFDP--ERYERAIDVTAL 719

Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESI 541
              + LLP G  T++GERGV +SGGQKQR+++ARA+  N  + + D+  SALDA     +
Sbjct: 720 QHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV 779

Query: 542 VQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 590
             + +   + G+T V+V ++L  +  VD + ++ +G + E GT+EEL  
Sbjct: 780 FDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828

Length = 1622

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  111 bits (279), Expect = 5e-27
 Identities = 74/242 (30%), Positives = 123/242 (50%), Gaps = 23/242 (9%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA- 1066
            +E++ +   Y  +  V    D ++ I      AL+G SG GKS+ +  I R  D  P+A 
Sbjct: 22   LEVKDLSIYYGEKRAV---NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78

Query: 1067 --GKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEA------ 1116
              G+++ +G +I    +N+ +LR +IG+V Q+P  F  SI++NI +  + A E       
Sbjct: 79   SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLD 138

Query: 1117 EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 1176
            E+VE +         +AL +  K  +    + LSGGQ+QR+ IAR +   PA+LLLDE  
Sbjct: 139  EIVEESLTK------AALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPA 192

Query: 1177 SALDAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVS 1235
            SALD  S   ++E +  L    + ++V H +   +R  D      +G +VE     ++ +
Sbjct: 193  SALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFT 252

Query: 1236 RP 1237
             P
Sbjct: 253  SP 254

Length = 268

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score =  109 bits (275), Expect = 6e-27
 Identities = 55/227 (24%), Positives = 110/227 (48%), Gaps = 24/227 (10%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            ++L ++   Y  +         +L +  G    L+G +G+GK++++ ++     P++G +
Sbjct: 1    LQLENLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAY-----GKEGATE-AEVVEAA 1122
             IDG+D+ +   + LR +IG + QE  ++   ++ + + Y     G       A V E  
Sbjct: 57   RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115

Query: 1123 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 1182
               N+           K  +G     LSGG ++R+ IA+A++ +P+IL++DE T+ LD E
Sbjct: 116  ELVNLGDR-------AKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164

Query: 1183 SECVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQG 1228
                 +  L  L   R  +L  H +  +  + + + V+  G++V +G
Sbjct: 165  ERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score =  112 bits (282), Expect = 7e-27
 Identities = 70/199 (35%), Positives = 107/199 (53%), Gaps = 19/199 (9%)

Query: 398 VVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TT 456
           ++G SG GK+T++ L+  F  P++G ++LD  D+ T     LR  I +V Q  ALF   T
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV-TNVPPHLR-HINMVFQSYALFPHMT 58

Query: 457 ILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERG----VQLSGGQKQRI 512
           + EN+ +G     M +V  A         + L+      Q+ E       QLSGGQ+QR+
Sbjct: 59  VEENVAFG---LKMRKVPRAEIKPRVLEALRLV------QLEEFADRKPHQLSGGQQQRV 109

Query: 513 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLS-TIRNVD 569
           A+ARA++  PKILLLDE  SALD      +Q  L  +   +G T V V H     +   D
Sbjct: 110 ALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSD 169

Query: 570 TVAVIQQGQVVETGTHEEL 588
            +A++++G++ + GT EE+
Sbjct: 170 RIAIMRKGKIAQIGTPEEI 188

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score =  109 bits (274), Expect = 7e-27
 Identities = 77/216 (35%), Positives = 108/216 (50%), Gaps = 26/216 (12%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IEF NV+ +YP    V    D S+    G+ + + G SG+GK+T++ L+     P+ G V
Sbjct: 2   IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59

Query: 425 LLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENI-----LYGKPEATMAE-VE 474
            +   D+  L   QL  LR +IG+V Q+  L    T+ EN+     + GK E  +   V 
Sbjct: 60  RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119

Query: 475 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
           AA             P            QLSGG++QR+AIARA++ +P +LL DE T  L
Sbjct: 120 AALRQVGLEHKADAFP-----------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168

Query: 535 DAG-SESIVQEALDRLMVGRTTVVVA-HRLSTIRNV 568
           D   SE I+   L RL    TTV+VA H LS +  V
Sbjct: 169 DPDLSERILD-LLKRLNKRGTTVIVATHDLSLVDRV 203

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  111 bits (279), Expect = 7e-27
 Identities = 81/240 (33%), Positives = 116/240 (48%), Gaps = 27/240 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE KN+TF Y    +     D S     G+ ++++G +GSGKST V LI+   +  +G +
Sbjct: 5   IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64

Query: 425 LLDNVDIKTLQLRW-LRDQIGLVNQEP--ALFATTI-------LENILYGKPEATMAE-V 473
           ++D  D+ T +  W +R +IG+V Q P       T+       LEN   G P   M E V
Sbjct: 65  IIDG-DLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLEN--KGIPHEEMKERV 121

Query: 474 EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSA 533
             A        F    P            +LSGGQKQR+AIA A+   PKI++LDEATS 
Sbjct: 122 NEALELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSM 170

Query: 534 LD-AGSESIVQEALD-RLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 591
           LD  G   +++     R     T + + H L  +   D V V++ GQV  T T  EL ++
Sbjct: 171 LDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230

Length = 279

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score =  110 bits (276), Expect = 7e-27
 Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 11/232 (4%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E  ++T SY S+  V   RD S     G+   ++G +G+GK+T++ +I     P++G V
Sbjct: 2   LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAH 483
            +D VD       ++R +IG++  E  L+A  T  EN+ Y      ++  E  A  A   
Sbjct: 60  TIDGVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
             + LL      +VGE     S G KQ++AIARA++ +P IL+LDE TS LD  +     
Sbjct: 119 KRLQLL-EYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173

Query: 544 EALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAG 593
           + + +L   GR  +  +H +  +  + D V V+ +G+VV  G+ E L A+  
Sbjct: 174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTV 225

Length = 245

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score =  106 bits (268), Expect = 1e-26
 Identities = 60/215 (27%), Positives = 92/215 (42%), Gaps = 60/215 (27%)

Query: 1011 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 1070
            E+ ++ F Y  R       + +L ++AG+  ALVG +GSGKS+++  I       AG + 
Sbjct: 1    EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAI-------AGLLK 50

Query: 1071 IDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGF 1130
                +I        +L +  +++                                     
Sbjct: 51   PTSGEILIDGKDIAKLPLEELRRR------------------------------------ 74

Query: 1131 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA 1190
            +  +P            QLSGGQ+QR+A+ARA+L NP +LLLDE TS LD  S   L E 
Sbjct: 75   IGYVP------------QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122

Query: 1191 LERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGR 1223
            L  L   GRT ++V H         D + V++DG+
Sbjct: 123  LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score =  108 bits (272), Expect = 1e-26
 Identities = 70/212 (33%), Positives = 111/212 (52%), Gaps = 31/212 (14%)

Query: 1031 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 1090
            F+L +  G+  A++G SG+GKS+++ LI  F +P +G + ++ +    L     +  + +
Sbjct: 17   FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL--APYQRPVSM 74

Query: 1091 VQQEPALFA-ASIFDNIAYG-----KEGATEAE-VVEAARAANVHGFVSALPNAYKTPVG 1143
            + QE  LFA  ++  NI  G     K  A + E VV+AA+   +  ++  LP        
Sbjct: 75   LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE------- 127

Query: 1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM------RG 1197
                QLSGGQ+QR+A+AR +++   ILLLDE  SALD     +L+E +  L+      R 
Sbjct: 128  ----QLSGGQRQRVALARCLVRPNPILLLDEPFSALDP----LLREEMLALVKQLCSERQ 179

Query: 1198 RTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQG 1228
            RT ++V H LS  R +   I VV  G+I    
Sbjct: 180  RTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  110 bits (276), Expect = 1e-26
 Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 14/195 (7%)

Query: 1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073
            H+  +Y  +P     +D +L I +G+   ++G SG GK++++ LI  F  P+ G + ++G
Sbjct: 8    HLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66

Query: 1074 KDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVS 1132
            + I     +      G+V Q  AL    ++ DN+A+G +     +      A  +   V 
Sbjct: 67   RRIEGPGAER-----GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVG 121

Query: 1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 1192
                 +K        QLSGG +QR+ IARA+   P +LLLDE   ALDA +   +QE L 
Sbjct: 122  LEGAEHKYIW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLL 176

Query: 1193 RLMR--GRTTVLVAH 1205
             L +  G+  +L+ H
Sbjct: 177  DLWQETGKQVLLITH 191

Length = 259

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score =  109 bits (274), Expect = 1e-26
 Identities = 72/244 (29%), Positives = 119/244 (48%), Gaps = 32/244 (13%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +E+  + F Y +R       D +  +R G+  AL+G +G+GKS++ +L+ R Y    G++
Sbjct: 2    LEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPAL-FAASIFDNIAYGKEGATEAEVVEAARAANVH 1128
             + G D+RR    +L  ++G+V Q+P L    S+  N+ Y                A +H
Sbjct: 59   SVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRY---------------HAALH 102

Query: 1129 GFVSALPNAYKTPV----------GERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
            G   A   A    +           ++  +L+GG ++R+ IARA+L  PA+LLLDE T  
Sbjct: 103  GLSRAEARARIAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVG 162

Query: 1179 LDAESECVLQEALERLMRGR-TTVLVA-HRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236
            LD  S   +   +  L R +  +VL A H +  I   D + V+  GR++  G+ +EL   
Sbjct: 163  LDPASRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222

Query: 1237 PDGA 1240
              GA
Sbjct: 223  TGGA 226

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  109 bits (275), Expect = 1e-26
 Identities = 75/225 (33%), Positives = 112/225 (49%), Gaps = 20/225 (8%)

Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-----AGKVMIDGKDI--RRLN 1080
             K+ NL I   +  A++G SG GKS+ I  +             G++  +G +I   +++
Sbjct: 28   LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87

Query: 1081 LKSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEVVEAARAANVHGFVSAL 1134
            L  LR  IG+V Q+   F  SIFDN+AYG      K      E+VE +          AL
Sbjct: 88   LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKD------VAL 141

Query: 1135 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 1194
             +  K  +  + + LSGGQ+QR+ IARA+  NP +LL+DE TSALD  S   ++E + +L
Sbjct: 142  WDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL 201

Query: 1195 MRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
                T V+V H +    R  D       G +VE    +++ S PD
Sbjct: 202  KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPD 246

Length = 259

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  109 bits (274), Expect = 2e-26
 Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 27/243 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PN-- 420
           IE +N +  Y  +   +      IF    +  A++G SG GK+T++  I R  D  P   
Sbjct: 4   IEIENFSAYYGEK-KAVKNVTMKIF--KNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60

Query: 421 -AGHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMA 471
             G +     DI    L +   R ++G+V Q+P  F  +I +N+ +G      K +  + 
Sbjct: 61  VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120

Query: 472 EV--EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 529
            +  E+   AA        L +   +++ + G +LSGGQ+QR+ IARA+   P+++LLDE
Sbjct: 121 RIVEESLKKAA--------LWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDE 172

Query: 530 ATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEEL 588
            TSALD  +   +++ L+ L    T V+V H +   IR  D +A + +G+++E G   E+
Sbjct: 173 PTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232

Query: 589 IAK 591
           + +
Sbjct: 233 VER 235

Length = 250

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score =  108 bits (272), Expect = 2e-26
 Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 15/206 (7%)

Query: 393 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPAL 452
           G    ++G +GSGKS ++  I  F  P++G +LL+  DI  L     +  I  V Q  AL
Sbjct: 25  GDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRDISYVPQNYAL 82

Query: 453 FA-TTILENILYGKPEATMAEVEAAASAANAHSF--ITLLPNGYSTQVGERGVQLSGGQK 509
           F   T+ +NI YG  +  + + E             I  L N            LSGG++
Sbjct: 83  FPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPE-------TLSGGEQ 135

Query: 510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN 567
           QR+AIARA++ NPKILLLDE  SALD  ++  ++E L ++    G T + V H       
Sbjct: 136 QRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWA 195

Query: 568 V-DTVAVIQQGQVVETGTHEELIAKA 592
           + D VA++  G++++ G  EE+  K 
Sbjct: 196 LADKVAIMLNGKLIQVGKPEEVFKKP 221

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score =  111 bits (279), Expect = 2e-26
 Identities = 69/256 (26%), Positives = 111/256 (43%), Gaps = 46/256 (17%)

Query: 365 IEFKNVTFSYP-SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN--- 420
           +E KN++ S+P     V      S     G+ + +VG SGSGKS +   I          
Sbjct: 2   LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61

Query: 421 --AGHVLLDNVDIKTL---QLRWLR-DQIGLVNQEP--AL-----FATTILENILYGKPE 467
              G +L D  D+ +L   +LR +R  +I ++ Q+P  +L         I E +      
Sbjct: 62  IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG 121

Query: 468 ATMAEVEAAASAA-------NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 520
            +  E +  A          +    +   P+           +LSGG +QR+ IA A+  
Sbjct: 122 LSKKEAKERAIELLELVGIPDPERRLKSYPH-----------ELSGGMRQRVMIAMALAL 170

Query: 521 NPKILLLDEATSALDAGSESIVQEALDRLMV------GRTTVVVAHRLSTIRNV-DTVAV 573
           NPK+L+ DE T+ALD      VQ  +  L+       G   +++ H L  +  + D VAV
Sbjct: 171 NPKLLIADEPTTALDV----TVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAV 226

Query: 574 IQQGQVVETGTHEELI 589
           +  G++VE G  EE+ 
Sbjct: 227 MYAGRIVEEGPVEEIF 242

Length = 316

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  109 bits (274), Expect = 2e-26
 Identities = 78/228 (34%), Positives = 110/228 (48%), Gaps = 20/228 (8%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR 1078
            D     + N++I      AL+G SG GKS+ +  + R  D        G V+ +GK+I  
Sbjct: 19   DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78

Query: 1079 LNLK--SLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEVVEAARAANVHGF 1130
             N     LR KIG+V Q P  F  SI+DNI+YG      K+     E+VE +        
Sbjct: 79   NNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKK----- 133

Query: 1131 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA 1190
             SAL N  K  +    + LSGGQ+QR+ IAR +   P ++L+DE TSALD  S   ++E 
Sbjct: 134  -SALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL 192

Query: 1191 LERLMRGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRP 1237
            +  L    T ++V H +    R  D      +G I E+ S  EL   P
Sbjct: 193  IINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNP 240

Length = 254

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score =  109 bits (274), Expect = 2e-26
 Identities = 70/219 (31%), Positives = 114/219 (52%), Gaps = 12/219 (5%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDI--RRLNL 1081
               +L     +  AL+G SGSGKS+++  I R  D        G ++ +G +I   R + 
Sbjct: 22   NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81

Query: 1082 KSLRLKIGLVQQEPALFAASIFDNIAYGK--EGATEAEVVEAARAANVHGFVSALPNAYK 1139
              LR +IG+V Q+P  F  SI++N+ YG   +G  + +V++ A   ++ G  +++ +  K
Sbjct: 82   VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKG--ASIWDEVK 139

Query: 1140 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 1199
              + +  + LSGGQ+QR+ IAR +  +P I+LLDE TSALD  S   ++E L  L    T
Sbjct: 140  DRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYT 199

Query: 1200 TVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRP 1237
             +LV   +    R  D  G   DG ++E     ++   P
Sbjct: 200  MLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP 238

Length = 252

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  110 bits (276), Expect = 2e-26
 Identities = 83/279 (29%), Positives = 131/279 (46%), Gaps = 51/279 (18%)

Query: 365 IEFKNVTFSYP--SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 422
           I  ++++F YP  +   +   +D S     G+ VA+VG +GSGKST+  L+     P AG
Sbjct: 6   IRVEHISFRYPDAATYAL---KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62

Query: 423 HVLLDNV--DIKTLQLRW-LRDQIGLVNQEP--ALFATTI-------LENILYGKPEATM 470
            + +  +    +T+   W +R Q+G+V Q P       T+       LENI  G P   M
Sbjct: 63  TITVGGMVLSEETV---WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI--GVPREEM 117

Query: 471 AE-VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 529
            E V+ A        F+   P+           +LSGGQKQR+AIA  +   P I++LDE
Sbjct: 118 VERVDQALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDE 166

Query: 530 ATSALD-AGSESIVQEALD--RLMV--GRTTVV-VAHRLSTIRNVDTVAVIQQGQVVETG 583
           ATS LD  G     +E L+  R +      TV+ + H L      D V V+ +G+++E G
Sbjct: 167 ATSMLDPRGR----REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEG 222

Query: 584 THEELIAKAGAYASL-------IRFQEMVRNRDFANPST 615
           T EE+         +       ++ +E+++      P+T
Sbjct: 223 TPEEIFKSGHMLQEIGLDVPFSVKLKELLKRNGILLPNT 261

Length = 279

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score =  112 bits (281), Expect = 2e-26
 Identities = 82/222 (36%), Positives = 116/222 (52%), Gaps = 21/222 (9%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088
            KD +L ++ G+   L+G SG GK++++ +I      TAG +   G+DI RL     +   
Sbjct: 21   KDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRL--PPQKRDY 78

Query: 1089 GLVQQEPALFAA-SIFDNIAYG--KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGER 1145
            G+V Q  ALF   ++ DNIAYG    G   AEV  A R A +   V    +  K P    
Sbjct: 79   GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEV--AERVAELLDLVGLPGSERKYPG--- 133

Query: 1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLV 1203
              QLSGGQ+QR+A+ARA+  +P +LLLDE  SALDA     L+  + +L R  G TT++V
Sbjct: 134  --QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMV 191

Query: 1204 AH----RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
             H     LS     D I V+  G I + G+  E+   P   +
Sbjct: 192  THDQEEALSM---ADRIVVMNHGVIEQVGTPQEIYRHPATPF 230

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  107 bits (271), Expect = 2e-26
 Identities = 60/231 (25%), Positives = 112/231 (48%), Gaps = 19/231 (8%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +++R++   Y       V  D +L +  G+   L+G +G+GK++ + ++     PT+G  
Sbjct: 1    LQIRNLTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAY-----GKEGATEAEVVEAAR 1123
             I+G  IR  + K+ R  +G   Q  ALF   ++ +++ +     G   +   E VE   
Sbjct: 60   YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVE--- 115

Query: 1124 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
               +   +     A           LSGG K+++++A A++  P++LLLDE TS LD  S
Sbjct: 116  --LLLRVLGLTDKA-NKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168

Query: 1184 ECVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSEL 1233
               + + +  + +GR+ +L  H +     + D I ++ DG++   GS  EL
Sbjct: 169  RRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  109 bits (274), Expect = 2e-26
 Identities = 76/240 (31%), Positives = 107/240 (44%), Gaps = 26/240 (10%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           I FKNV+F Y S       +D S   P G+  ++VG +GSGKST+  L+       +G +
Sbjct: 8   IVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPA-LFATTI--------LENILYGKPEATMAE-VE 474
             +N  I       LR  IG+V Q P   F  +I        LEN     P   M   V 
Sbjct: 67  FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAV--PYDEMHRRVS 124

Query: 475 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
            A    +        PN            LSGGQKQR+AIA  +  NP +++LDEATS L
Sbjct: 125 EALKQVDMLERADYEPNA-----------LSGGQKQRVAIAGVLALNPSVIILDEATSML 173

Query: 535 DAGSESIVQEALDRLMVGR--TTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA 592
           D  +   + + + ++      T + + H LS     D V V+ +G V + GT  E+   A
Sbjct: 174 DPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233

Length = 269

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score =  117 bits (293), Expect = 3e-26
 Identities = 55/109 (50%), Positives = 81/109 (74%), Gaps = 2/109 (1%)

Query: 1115 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 1174
            ++EVV+ ++   +H FVSALP+ Y+T VG    +LSGGQKQRI+IARA+++NP IL+LDE
Sbjct: 546  DSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDE 605

Query: 1175 ATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQD 1221
            ATS+LD +SE ++Q+ +  L     R T+++AHRLSTIR  + I V+ +
Sbjct: 606  ATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654

Length = 1466

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score =  116 bits (293), Expect = 3e-26
 Identities = 73/236 (30%), Positives = 124/236 (52%), Gaps = 16/236 (6%)

Query: 1002 PVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF 1061
            P+E     I +++  F++ S+ +     + NL +  G   A+VG++G GK+S+I+ +   
Sbjct: 607  PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGE 666

Query: 1062 YDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEA 1121
              P +   ++            +R  +  V Q   +F A++ DNI +G     + E  E 
Sbjct: 667  LPPRSDASVV------------IRGTVAYVPQVSWIFNATVRDNILFGSP--FDPERYER 712

Query: 1122 A-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 1180
            A     +   +  LP    T +GERGV +SGGQKQR+++ARAV  N  + + D+  SALD
Sbjct: 713  AIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772

Query: 1181 AE-SECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 1235
            A     V  + ++  +RG+T VLV ++L  +  VD I +V +G I E+G++ EL +
Sbjct: 773  AHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828

Length = 1622

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score =  108 bits (271), Expect = 3e-26
 Identities = 66/233 (28%), Positives = 114/233 (48%), Gaps = 12/233 (5%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E   ++F Y +R  +    D S     G+ VA++G +G+GKST+ SL+ R Y    G +
Sbjct: 2   LEVAGLSFRYGARRAL---DDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPAL-FATTILENILYGKPEATMAEVEAAASAANAH 483
            +   D++      L  ++G+V Q+P L    ++ +N+ Y      ++  EA A  A   
Sbjct: 59  SVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAEL- 116

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
               L   G + +  ++  +L+GG ++R+ IARA+L  P +LLLDE T  LD  S + + 
Sbjct: 117 ----LARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172

Query: 544 EALDRLMVGRTTVVV--AHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGA 594
             +  L   +   V+   H +  I   D + V+ +G+V+  G   EL    G 
Sbjct: 173 AHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGG 225

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  109 bits (275), Expect = 3e-26
 Identities = 75/239 (31%), Positives = 120/239 (50%), Gaps = 32/239 (13%)

Query: 1010 IELRHVDFAYP--SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            I + H+ F YP  +   +   KD +  +  G+  A+VG +GSGKS++  L+     P AG
Sbjct: 6    IRVEHISFRYPDAATYAL---KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62

Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAEVVEAAR 1123
             + + G  +    +  +R ++G+V Q P      A++ D++A+G E  G    E+VE   
Sbjct: 63   TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVD 122

Query: 1124 AA----NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 1179
             A     +  F++  P+           +LSGGQKQR+AIA  +   P I++LDEATS L
Sbjct: 123  QALRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSML 171

Query: 1180 DAESECVLQEALE--RLMR--GRTTVL-VAHRLSTIRGVDCIGVVQDGRIVEQGSHSEL 1233
            D       +E LE  R ++     TVL + H L      D + V+  G I+E+G+  E+
Sbjct: 172  DPRGR---REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEI 227

Length = 279

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  109 bits (273), Expect = 3e-26
 Identities = 80/243 (32%), Positives = 126/243 (51%), Gaps = 24/243 (9%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD----- 1063
            +I++ +++  Y  +      K+ +++I      AL+G SG GKS+ I  + R  D     
Sbjct: 12   QIKVENLNLWYGEKQ---ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68

Query: 1064 PTAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GATEAE-- 1117
               GKV I+G+DI    +++  LR  +G+V Q+P  F  SI+DN+AYG    GA + +  
Sbjct: 69   RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLD 128

Query: 1118 -VVEAA-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 1175
             VVE A R+A +    S   +  K+P     + LSGGQ+QR+ IAR +   P I+L DE 
Sbjct: 129  GVVENALRSAALWDETS---DRLKSP----ALSLSGGQQQRLCIARTLAVKPKIILFDEP 181

Query: 1176 TSALDAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELV 1234
            TSALD  S   +++ +  L +  T V+V H +    R  D  G    G ++E G   ++ 
Sbjct: 182  TSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241

Query: 1235 SRP 1237
              P
Sbjct: 242  HNP 244

Length = 258

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  110 bits (277), Expect = 3e-26
 Identities = 69/207 (33%), Positives = 114/207 (55%), Gaps = 12/207 (5%)

Query: 1011 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PT 1065
            E+R+ +F Y +R   V+  D NL I+  +  A +G SG GKS+ +  + +  D       
Sbjct: 82   EIRNFNFWYMNRTKHVL-HDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140

Query: 1066 AGKVMIDGKDIRRLNLKSL--RLKIGLVQQEPALFAASIFDNIAYG--KEGATEAEVVEA 1121
             G++   G + R   + SL  R +IG+V Q+P  F  SIFDN+AYG    G  + +++E 
Sbjct: 141  EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200

Query: 1122 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
                ++    +AL +  K  + + G  LSGGQ+QR+ IARA+   P +LL+DE TSALD 
Sbjct: 201  IVEKSLKS--AALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDP 258

Query: 1182 ESECVLQEALERLMRGRTTVLVAHRLS 1208
             +   ++E +  L +  + ++V H ++
Sbjct: 259  IATAKIEELILELKKKYSIIIVTHSMA 285

Length = 329

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  109 bits (274), Expect = 3e-26
 Identities = 72/237 (30%), Positives = 116/237 (48%), Gaps = 17/237 (7%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA--- 1066
            +E +HV F YP      +  D +  I  G   AL+G +GSGKS++  LI     P     
Sbjct: 6    VEFKHVSFTYPDSKKPAL-NDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64

Query: 1067 GKVMIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAEVVEAA 1122
             K+ +DG  +    +  +R K+G+V Q P      A++ D++A+G E       E+++  
Sbjct: 65   SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124

Query: 1123 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 1182
            R  +V   V  L      P       LSGGQKQR+AIA  +   P I++LDE+TS LD  
Sbjct: 125  R--DVLADVGMLDYIDSEPA-----NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177

Query: 1183 SECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
             +  + + + +L      T + + H +      D + V+ DG+++ QGS  E+ S+ 
Sbjct: 178  GKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSKV 234

Length = 282

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  108 bits (272), Expect = 4e-26
 Identities = 68/238 (28%), Positives = 120/238 (50%), Gaps = 42/238 (17%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
             IE+ ++  +Y +RP   V +D +L +  G+  AL+G +G+GKS+++  I     P++G+
Sbjct: 4    MIEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60

Query: 1069 VMIDGKDIRRLNLKSLRLKIGLVQQEPAL---FAASIFDNIA---YGKEG-------ATE 1115
            + I GK +R+   +  RL+IG V Q+ ++   F  ++ D +    YGK+G         +
Sbjct: 61   IKIFGKPVRK---RRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117

Query: 1116 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 1175
             +V EA     +              +GE    LSGGQKQR+ +ARA+ +NP +LLLDE 
Sbjct: 118  EKVDEALERVGMEDLR-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEP 166

Query: 1176 TSALDAESECVLQEALERL-MRGRTTVLVAHRLSTI-----------RGVDCIGVVQD 1221
             + +D   +  + + L+ L   G+T ++V H L  +           R +   G  ++
Sbjct: 167  FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEE 224

Length = 254

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score =  107 bits (268), Expect = 4e-26
 Identities = 69/224 (30%), Positives = 103/224 (45%), Gaps = 34/224 (15%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IEF NVT +YP           +I   AG+ V +VG SG+GKST++ LI +   P +G +
Sbjct: 1   IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58

Query: 425 LLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILEN------ILYGKPEATMAEVE 474
            ++  D+  L    + +LR +IG+V Q+  L     + EN      +    P      V 
Sbjct: 59  RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118

Query: 475 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
           AA            LP            +LSGG++QR+AIARA++ +P IL+ DE T  L
Sbjct: 119 AALELVGLSHKHRALPA-----------ELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167

Query: 535 DAGSESIVQEALDRLMVGRTTVVVA-----------HRLSTIRN 567
           D  +   +   L ++    TTVVVA           HR+  +  
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALER 211

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score =  103 bits (260), Expect = 4e-26
 Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 13/129 (10%)

Query: 1052 SSVIALIERFYDPTAGKVMIDGKDIRRLN-LKSLRLKIGLVQQEPALFA-ASIFDNIAYG 1109
            S+++ LI     PT+G +++DG+D   L+  K LR +IG+V Q+P LF   ++ +N+ +G
Sbjct: 1    STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60

Query: 1110 -KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 1168
             ++   +A   EA     +  F+   P             LSGGQKQR+AIARA+LK P 
Sbjct: 61   LRDKEADARAEEALERVGLPDFLDREPVG----------TLSGGQKQRVAIARALLKKPK 110

Query: 1169 ILLLDEATS 1177
            +LLLDE T+
Sbjct: 111  LLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score =  108 bits (272), Expect = 4e-26
 Identities = 77/213 (36%), Positives = 110/213 (51%), Gaps = 21/213 (9%)

Query: 392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL--------QLRWLRDQI 443
            G+ VA++G SGSGK+T++  I     P AG + + ++ I T          +R LR  +
Sbjct: 28  PGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHV 87

Query: 444 GLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV 502
           G V Q   LF   T+LENI+ G P     E +  A+A        +   G  T    R  
Sbjct: 88  GFVFQNFNLFPHRTVLENIIEG-PVIVKGEPKEEATARARELLAKVGLAGKETSYPRR-- 144

Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV----GRTTVVV 558
            LSGGQ+QR+AIARA+   P+++L DE TSALD     +V E L+ +       RT V+V
Sbjct: 145 -LSGGQQQRVAIARALAMRPEVILFDEPTSALDP---ELVGEVLNTIRQLAQEKRTMVIV 200

Query: 559 AHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 590
            H +S  R+V D    + QG++VE G  + L A
Sbjct: 201 THEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233

Length = 250

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score =  107 bits (269), Expect = 4e-26
 Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 34/224 (15%)

Query: 366 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 425
           E +++T SY   P   +  D S     G+ +A+VG +G+GKST++  I     P +G   
Sbjct: 1   EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSG--- 54

Query: 426 LDNVDIKTLQLRWLRDQIGLVNQEPAL---FATTILENI---LYGK-------PEATMAE 472
             ++ +    L   R +IG V Q  ++   F  ++ + +   LYG         +A  A+
Sbjct: 55  --SIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112

Query: 473 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 532
           V+ A                   Q+GE    LSGGQ+QR+ +ARA++++P +LLLDE  +
Sbjct: 113 VDEALERVGLSELA-------DRQIGE----LSGGQQQRVLLARALVQDPDLLLLDEPFA 161

Query: 533 ALDAGSESIVQEALDRL-MVGRTTVVVAHRLSTI-RNVDTVAVI 574
            +D  ++  + E L  L   G T +VV H L  +    D V ++
Sbjct: 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL 205

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score =  107 bits (270), Expect = 4e-26
 Identities = 71/236 (30%), Positives = 111/236 (47%), Gaps = 34/236 (14%)

Query: 1030 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP----TAGKVMIDGKDIRRLNLKSLR 1085
            D NL ++ G+  ALVG SGSGKS     I     P    T+G++++DG+ +  L+++   
Sbjct: 4    DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR- 62

Query: 1086 LKIGLVQQEPALFAASIFDNIAYGKEGATE-------------AEVVEAARAANVHGFVS 1132
              I  + Q P     + F+ +      A E             A ++EA  A        
Sbjct: 63   -HIATIMQNPR----TAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVG------ 111

Query: 1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 1192
             LP+  +  + +   QLSGG  QR+ IA A+L  P  L+ DE T+ LD  ++  + + L 
Sbjct: 112  -LPDP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169

Query: 1193 RLM--RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 1245
             L    G   +L+ H L  + R  D + V+ DGRIVE+G+  E+   P    +R L
Sbjct: 170  ELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKL 225

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score =  107 bits (269), Expect = 5e-26
 Identities = 69/227 (30%), Positives = 106/227 (46%), Gaps = 38/227 (16%)

Query: 382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLR 440
           I    S+  P G+ VA++G +G+GK+T++  I     P +G +  D  DI  L      R
Sbjct: 15  ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74

Query: 441 DQIGLVNQEPALFAT-TILENILYG-------KPEATMAEVEAAASAANAHSFITLLPNG 492
             IG V +   +F   T+ EN+L G       K +A +  V              L P  
Sbjct: 75  AGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERV------------YELFPR- 121

Query: 493 YSTQVGER----GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDR 548
               + ER       LSGG++Q +AIARA++  PK+LLLDE +  L   +  IV+E  + 
Sbjct: 122 ----LKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEA 174

Query: 549 LM----VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 590
           +      G T ++V         + D   V+++G+VV  GT  EL+A
Sbjct: 175 IRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  109 bits (274), Expect = 5e-26
 Identities = 77/245 (31%), Positives = 122/245 (49%), Gaps = 23/245 (9%)

Query: 1009 EIELRHVDFAY-PSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 1066
            +I  + V+  Y    P +     D N+ I +G   A++G +GSGKS+++  +     PT+
Sbjct: 2    DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61

Query: 1067 GKVMIDGKDI----RRLNLKSLRLKIGLVQQ--EPALFAASIFDNIAYGKE--GATEAEV 1118
            G V I  + I    +   LK LR K+G+V Q  E  LF  ++  +I +G    G +E + 
Sbjct: 62   GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDA 121

Query: 1119 VEAARAANVHGFVSALPNAY--KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 1176
                +A  +   V  LP     ++P      +LSGGQ +R+AIA  +   P +L+LDE T
Sbjct: 122  --KQKAREMIELV-GLPEELLARSPF-----ELSGGQMRRVAIAGVLAMEPEVLVLDEPT 173

Query: 1177 SALDAESECVLQEALERLMR--GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSEL 1233
            + LD +    + E   +L +  G TTVLV H +    R  D I V+  G +  QG+  E+
Sbjct: 174  AGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREI 233

Query: 1234 VSRPD 1238
             + PD
Sbjct: 234  FADPD 238

Length = 290

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score =  108 bits (272), Expect = 5e-26
 Identities = 69/224 (30%), Positives = 115/224 (51%), Gaps = 22/224 (9%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDI--RRLNL 1081
            K+ NL I   +  A++G SG GKS+ I  + R  +      T GK++   ++I  +  ++
Sbjct: 41   KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100

Query: 1082 KSLRLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEVVEAA-RAANVHGFVSAL 1134
            + LR  +G+V Q+P  F  SI+DN+ YG      K+  T  E+VE + R A       A+
Sbjct: 101  EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGA-------AI 153

Query: 1135 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 1194
             +  K  + +    LSGGQ+QR+ IAR +   P ++L+DE TSALD  S   ++E ++ L
Sbjct: 154  WDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL 213

Query: 1195 MRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
             +  + ++V H +    R  D      +G + E     ++ S P
Sbjct: 214  KKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP 257

Length = 271

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  107 bits (269), Expect = 6e-26
 Identities = 78/233 (33%), Positives = 111/233 (47%), Gaps = 27/233 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA- 421
           I+ ++V F Y    D    +  S+       VA +G SG GKST + L  R  D  P   
Sbjct: 4   IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60

Query: 422 --GHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMA 471
             G + +D  +I  K +Q+  LR  +G+V Q P  F  +I EN+ YG      K  A + 
Sbjct: 61  LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR 120

Query: 472 E--VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 529
           +   E    AA        L +    ++ E    LSGGQ+QR+ IARAM  +P +LL+DE
Sbjct: 121 QRVEETLKGAA--------LWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE 172

Query: 530 ATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVE 581
             SALD  S + V+E +  L    T V+V H +     V D  A    G++VE
Sbjct: 173 PASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225

Length = 250

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score =  107 bits (270), Expect = 6e-26
 Identities = 73/222 (32%), Positives = 115/222 (51%), Gaps = 22/222 (9%)

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDI--KTLQLR 437
           D S+ F   +  A++G SG GKST +  + R  D  P A   G +LLD  +I    + + 
Sbjct: 24  DISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83

Query: 438 WLRDQIGLVNQEPALFATTILENILYG------KPEATMAE-VEAAASAANAHSFITLLP 490
            LR ++G+V Q+P  F  +I EN+ YG      K +A +AE VE +   A        L 
Sbjct: 84  ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHA-------ALW 136

Query: 491 NGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 550
           +    ++ E  + LSGGQ+QR+ IARA+   P++LL+DE  SALD  +   ++E +  L 
Sbjct: 137 DEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK 196

Query: 551 VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 591
              T ++V H +     V D  A    G+++E G  E++  +
Sbjct: 197 ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238

Length = 253

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  107 bits (269), Expect = 6e-26
 Identities = 69/228 (30%), Positives = 114/228 (50%), Gaps = 12/228 (5%)

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKD 1075
            S  +       +L     +  AL+G SG GKS+ +  + R  D        G++  +G++
Sbjct: 13   SYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN 72

Query: 1076 I--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GATEAEVVEAARAANVHGFV 1131
            I   +++L  LR ++G+V Q+P  F  S++DN+AYG +  G  + E+++     ++    
Sbjct: 73   IYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQ-- 130

Query: 1132 SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEAL 1191
            +A+    K  +       SGGQ+QRI IARA+   P ++LLDE TSALD  S   ++E L
Sbjct: 131  AAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL 190

Query: 1192 ERLMRGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
              L    T ++V H L    R  D    + +G ++E G   E+   P 
Sbjct: 191  MELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPK 238

Length = 251

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  107 bits (269), Expect = 7e-26
 Identities = 72/218 (33%), Positives = 115/218 (52%), Gaps = 9/218 (4%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-----AGKVMIDGKDIR--RLNL 1081
            K+ NL ++ G   AL+G SG GK++ +  I R +D T      G++++DG+DI   R++ 
Sbjct: 21   KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80

Query: 1082 KSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT 1140
             ++R ++G+V Q+P  F   S+FDN+  G + A   +       A      +AL +  K 
Sbjct: 81   VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKD 140

Query: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 1200
             +      LSGGQ+QR+ IARA+   P ILL+DE TSALD  S   +++ +  L +  T 
Sbjct: 141  RLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTI 200

Query: 1201 VLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
            ++V H +    R  D       G +VE G   +L + P
Sbjct: 201  IIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNP 238

Length = 252

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  107 bits (269), Expect = 8e-26
 Identities = 72/226 (31%), Positives = 118/226 (52%), Gaps = 16/226 (7%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF---YDP---TAGKVMIDGKDIR 1077
            D  + KD  ++I       ++G SGSGKS+++ ++ R    YD      GKV+  GKDI 
Sbjct: 22   DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81

Query: 1078 RLNLKSLRLKIGLVQQEPALFA-ASIFDNIAY--GKEGATEAEVVEAARAANVH--GFVS 1132
            +++   LR ++G+V Q+P  F   SI+DNIAY     G  E   ++      +   G   
Sbjct: 82   QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK 141

Query: 1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 1192
             + +   +P      QLSGGQ+QR+ IARA+   P +LL+DE TS +D  +   +++ + 
Sbjct: 142  EVYDRLNSPAS----QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197

Query: 1193 RLMRGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRP 1237
             L      V+V+H    + R  D +  + +G +VE GS +E+ + P
Sbjct: 198  ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSP 243

Length = 257

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score =  107 bits (268), Expect = 1e-25
 Identities = 79/251 (31%), Positives = 124/251 (49%), Gaps = 32/251 (12%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA- 1066
            I+++ ++  Y S   V   +D NL I      A +G SG GKS+V+  + R ++  P A 
Sbjct: 5    IDVKDLNIYYGSFHAV---EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61

Query: 1067 --GKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYG------KEGATE 1115
              G+V++DG+D+    ++  ++R  IG+V Q P  F   SI DN+  G      +     
Sbjct: 62   VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDL 121

Query: 1116 AEVVEAA-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 1174
             E+VE + R AN       L N  K  + + G  LSGGQ+QR+ IARA+   P +LL+DE
Sbjct: 122  DELVEKSLRGAN-------LWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDE 174

Query: 1175 ATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGV-------DCIGVVQDGRIVEQ 1227
              SALD  S   +++ +  L +  T V+V H +     V       +     + GR+VE 
Sbjct: 175  PCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234

Query: 1228 GSHSELVSRPD 1238
                ++ S P 
Sbjct: 235  DDTEKIFSNPT 245

Length = 258

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score =  109 bits (275), Expect = 1e-25
 Identities = 84/255 (32%), Positives = 137/255 (53%), Gaps = 26/255 (10%)

Query: 998  PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL 1057
            P A+  + +   +E+R++  ++  +  V    D +L I  G+  AL+GASG GKS+++ +
Sbjct: 8    PQAKTRKALTPLLEIRNLTKSFDGQHAV---DDVSLTIYKGEIFALLGASGCGKSTLLRM 64

Query: 1058 IERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG--KEGAT 1114
            +  F  PTAG++M+DG D+  +     +  I ++ Q  ALF   ++  NIA+G  ++   
Sbjct: 65   LAGFEQPTAGQIMLDGVDLSHV--PPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP 122

Query: 1115 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 1174
            +AE+  A+R   + G V     A + P      QLSGGQ+QR+A+AR++ K P +LLLDE
Sbjct: 123  KAEI--ASRVNEMLGLVHMQEFAKRKPH-----QLSGGQRQRVALARSLAKRPKLLLLDE 175

Query: 1175 ATSALDAESECVLQ----EALERLMRGRTTVLVAH---RLSTIRGVDCIGVVQDGRIVEQ 1227
               ALD +    +Q    + LER+  G T V+V H      T+ G   I ++  G+ V+ 
Sbjct: 176  PMGALDKKLRDRMQLEVVDILERV--GVTCVMVTHDQEEAMTMAGR--IAIMNRGKFVQI 231

Query: 1228 GSHSELVSRPDGAYS 1242
            G   E+   P   YS
Sbjct: 232  GEPEEIYEHPTTRYS 246

Length = 377

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  106 bits (265), Expect = 2e-25
 Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 10/223 (4%)

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA---GHVLLDNVDIKTLQLRWLRD 441
           D ++     K  A++G SG GKST +    R  D  A   G V ++  D+K   +  LR 
Sbjct: 20  DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79

Query: 442 QIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITL-LPNGYSTQVGER 500
            +G+V Q+P +F  +I ENI Y      M + +    A        + L      ++ + 
Sbjct: 80  NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQN 139

Query: 501 GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAH 560
            + LSGGQ+QR+ IARA+   PK+LLLDE TSALD  S  +++E L  L    + ++V H
Sbjct: 140 ALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTH 199

Query: 561 RLSTIRNV-DTVAVIQQGQVVETGTHEELI-----AKAGAYAS 597
            +   + V D  A    G+++E G  +E        K  AY S
Sbjct: 200 NMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKTKAYLS 242

Length = 246

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score =  105 bits (265), Expect = 2e-25
 Identities = 63/234 (26%), Positives = 112/234 (47%), Gaps = 25/234 (10%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +E+ +++  Y       +    +L +  G+  AL+G +G+GK++++  I     P +G +
Sbjct: 1    LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI 57

Query: 1070 MIDGKDIRRLNL-KSLRLKIGLVQQEPALFAA-SIFDNI---AYGKEGATEAEVVEAARA 1124
              DG+DI  L   +  R  IG V +   +F   ++ +N+   AY +  A     +E    
Sbjct: 58   RFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLER--- 114

Query: 1125 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 1184
              V+     L    K   G     LSGG++Q +AIARA++  P +LLLDE +  L   + 
Sbjct: 115  --VYELFPRLKERRKQLAG----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---AP 165

Query: 1185 CVLQEALERLMR----GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSEL 1233
             +++E  E +      G T +LV         + D   V++ GR+V +G+ +EL
Sbjct: 166  KIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score =  103 bits (260), Expect = 2e-25
 Identities = 55/220 (25%), Positives = 102/220 (46%), Gaps = 63/220 (28%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +ELR +   +     V      +L +R G+  AL+G +G+GKS+++ ++   Y P +G++
Sbjct: 1    LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57

Query: 1070 MIDGKDIRRLNLK-SLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVH 1128
            ++DGK++   + + + R  I +                                    V+
Sbjct: 58   LVDGKEVSFASPRDARRAGIAM------------------------------------VY 81

Query: 1129 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVL 1187
                               QLS G++Q + IARA+ +N  +L+LDE T+AL  AE E + 
Sbjct: 82   -------------------QLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF 122

Query: 1188 QEALERLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIV 1225
             + + RL  +G   + ++HRL  +  + D + V++DGR+V
Sbjct: 123  -KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score =  109 bits (273), Expect = 2e-25
 Identities = 79/247 (31%), Positives = 122/247 (49%), Gaps = 44/247 (17%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            + L+++   + S     V  + NL I+ G    L+G SG GK++V+ L+     PT G++
Sbjct: 7    VVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG--KEGATEAE----VVEAA 1122
             IDG+D+   +++  +  I +V Q  ALF   S+ +N+ YG    G  + E    V EA 
Sbjct: 64   FIDGEDVTHRSIQ--QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEAL 121

Query: 1123 RAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
               ++ GF             +R V Q+SGGQ+QR+A+ARA++  P +LL DE  S LDA
Sbjct: 122  ELVDLAGF------------EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169

Query: 1182 ESECVLQEALERLMR----------GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSH 1230
                     L R MR            T++ V H  S    V D + V+  G+I++ GS 
Sbjct: 170  N--------LRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSP 221

Query: 1231 SELVSRP 1237
             EL  +P
Sbjct: 222  QELYRQP 228

Length = 351

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score =  108 bits (271), Expect = 2e-25
 Identities = 70/227 (30%), Positives = 109/227 (48%), Gaps = 48/227 (21%)

Query: 392 AGKTVAVVGGSGSGKSTV---VSLIERFYDPNAGHVLLDNVDIK---TLQLRWLRDQIGL 445
            GKT+AVVG SG GKST+   +++IE    P  G +     D+        + LR +I +
Sbjct: 40  RGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDLLKADPEAQKLLRQKIQI 96

Query: 446 VNQEPALFAT--------TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV 497
           V Q P  + +         ILE     +P      + AA     A + +         +V
Sbjct: 97  VFQNP--YGSLNPRKKVGQILE-----EPLLINTSLSAAERREKALAMMA--------KV 141

Query: 498 GERGVQ-------LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 550
           G R           SGGQ+QRIAIARA++ +P +++ DE  SALD    S+  + L+ +M
Sbjct: 142 GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV---SVQAQVLNLMM 198

Query: 551 -----VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 591
                +G + V ++H LS + ++ D V V+  G+ VE GT E++   
Sbjct: 199 DLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNN 245

Length = 327

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score =  104 bits (262), Expect = 2e-25
 Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 19/197 (9%)

Query: 368 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 427
           +N++FSY    +++   D S+   AG+ +A+ G +G+GK+T+  ++      ++G +LL+
Sbjct: 3   ENISFSYKKGTEIL--DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60

Query: 428 NVDIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAANAHSF 485
              IK    +  R  IG V Q+    LF  ++ E +L G  E        A +       
Sbjct: 61  GKPIK---AKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL------DAGNEQAETVL 111

Query: 486 ITLLPNGYSTQVGERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 544
             L          ER    LSGGQKQR+AIA A+L    +L+ DE TS LD  +   V E
Sbjct: 112 KDLDLYALK----ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGE 167

Query: 545 ALDRLM-VGRTTVVVAH 560
            +  L   G+  +V+ H
Sbjct: 168 LIRELAAQGKAVIVITH 184

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  106 bits (265), Expect = 3e-25
 Identities = 78/242 (32%), Positives = 125/242 (51%), Gaps = 17/242 (7%)

Query: 1007 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIA----LIERFY 1062
              +IE+R +  ++     V V    NL I      AL+G SGSGKS+++     LIE + 
Sbjct: 1    MNKIEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP 57

Query: 1063 DP-TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP-ALFAASIFDNIAYG----KEGATEA 1116
            +   +G+V +DG+DI ++++  LR ++ +V Q P  +   SIF+N+A G    +   ++ 
Sbjct: 58   EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK 117

Query: 1117 EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 1176
            E+ E  R A      + L +  K  +     +LSGGQ+QR+ IARA+   P +LL DE T
Sbjct: 118  ELQERVRWALEK---AQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPT 174

Query: 1177 SALDAESECVLQEALERLMRGRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVS 1235
            + LD E+   ++     L +  T VLV H      R  D +  +  G+IVE G   E+ +
Sbjct: 175  ANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234

Query: 1236 RP 1237
             P
Sbjct: 235  NP 236

Length = 250

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score =  106 bits (266), Expect = 3e-25
 Identities = 67/191 (35%), Positives = 100/191 (52%), Gaps = 19/191 (9%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA---GKVMIDGKDI--RRLNL 1081
            K+  L I   Q  A +G SG GKS+++    R  D  P     GKV   GK++    ++ 
Sbjct: 27   KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86

Query: 1082 KSLRLKIGLVQQEPALFAASIFDNIAYGK-----EGATEAEVVEAARAANVHGFVSALPN 1136
              +R +IG+V Q+P  F  SI+DNIAYG      +G  +  V  + R A       AL +
Sbjct: 87   VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQA-------ALWD 139

Query: 1137 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 1196
              K  + + G+ LSGGQ+QR+ IARA+   P ++L+DE  SALD  S   ++E +  L  
Sbjct: 140  EVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE 199

Query: 1197 GRTTVLVAHRL 1207
              T ++V H +
Sbjct: 200  QYTIIIVTHNM 210

Length = 264

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score =  106 bits (265), Expect = 3e-25
 Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 13/247 (5%)

Query: 376 SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ 435
           S    +I     +  P G    ++G +GSGKST++ L+     P+AG V L  VD+  L 
Sbjct: 10  SAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLS 69

Query: 436 LRWLRDQIGLVNQE-PALFATTILENILYGK-PEATMAEVEAAASAANAHSFITLLPNGY 493
            R    ++ LV Q+       T+ + +  G+ P  ++   ++   AA     +       
Sbjct: 70  RRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTE--- 126

Query: 494 STQVGERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG 552
            + + +R +  LSGG++QR+ +ARA+ + PK+LLLDE T+ LD  ++      +  L   
Sbjct: 127 LSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT 186

Query: 553 RTTVVVA-HRLS-TIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDF 610
             TVV A H L+      D V V+  G+VV  G   E++  A     LIR    V     
Sbjct: 187 GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPA-----LIRAVYGVDATVL 241

Query: 611 ANPSTRR 617
            +P T R
Sbjct: 242 THPDTGR 248

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  106 bits (266), Expect = 3e-25
 Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 23/237 (9%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE+  + F Y         K  +L I  G   AL+G +G+GKS+++  +   Y P  G+V
Sbjct: 5    IEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYG--KEGATEAEVV----EA 1121
             + G+++   N K +R K+GLV Q+P   +F+++++D++A+G    G  + EV     EA
Sbjct: 63   KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122

Query: 1122 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
             +A  +  F        K P       LS GQK+R+AIA  +  +P +++LDE  + LD 
Sbjct: 123  LKAVRMWDF------RDKPPY-----HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171

Query: 1182 ESECVLQEALERLMRGRTTVLVA-HRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSR 1236
              +  L E L+RL     TV+VA H +       D + V+++GR++ +G  S L   
Sbjct: 172  RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228

Length = 274

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score =  104 bits (261), Expect = 3e-25
 Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 8/207 (3%)

Query: 378 PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR 437
             +    + +I  P G+   +VG  G GKS+++  I        G V   N +       
Sbjct: 12  SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71

Query: 438 WLRDQ----IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGY 493
             R +    +    Q+P L   T+ ENI +G P       +A   A +    I LLP G 
Sbjct: 72  ATRSRNRYSVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGD 130

Query: 494 STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQEALDRLMVG 552
            T++GERG+ LSGGQ+QRI +ARA+ +N  I+ LD+  SALD   S+ ++QE + + +  
Sbjct: 131 QTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190

Query: 553 --RTTVVVAHRLSTIRNVDTVAVIQQG 577
             RT V+V H+L  + + D +  ++ G
Sbjct: 191 DKRTLVLVTHKLQYLPHADWIIAMKDG 217

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score =  104 bits (261), Expect = 3e-25
 Identities = 61/224 (27%), Positives = 106/224 (47%), Gaps = 18/224 (8%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +    + FSY  +P       F + F  G+  A+VG SGSGKST+++LI  F  P +G V
Sbjct: 1   VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGK-PEATMAEVEAAASAANA 482
           L++ VD+           + ++ QE  LFA  T+ +N+  G  P   +   +  A     
Sbjct: 56  LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113

Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
                    G +        +LSGG++QR+A+AR ++++  +LLLDE  +ALD    + +
Sbjct: 114 ARV------GLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEM 167

Query: 543 QEALDRL--MVGRTTVVVAHRLSTIRNVDT-VAVIQQGQVVETG 583
            + +  L      T ++V H+    + +   V  +  G++   G
Sbjct: 168 LDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score =  113 bits (285), Expect = 3e-25
 Identities = 70/226 (30%), Positives = 114/226 (50%), Gaps = 17/226 (7%)

Query: 374 YPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT 433
           +   P V++ RD S+  P GK   V+G +GSGKST++  +   ++ + G V         
Sbjct: 668 FELEPKVLL-RDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV--------- 717

Query: 434 LQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGY 493
               W    I  V Q+  +   T+  NIL+   E   A +  A   +   + +  L  G 
Sbjct: 718 ----WAERSIAYVPQQAWIMNATVRGNILFFDEEDA-ARLADAVRVSQLEADLAQLGGGL 772

Query: 494 STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQEALDRLMVG 552
            T++GE+GV LSGGQK R+++ARA+  N  + LLD+  SALDA   E +V+E     + G
Sbjct: 773 ETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAG 832

Query: 553 RTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASL 598
           +T V+  H++  +   D V  +  G+V  +G+  +   +   YA+L
Sbjct: 833 KTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADF-MRTSLYATL 877

Length = 1560

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  106 bits (265), Expect = 3e-25
 Identities = 71/210 (33%), Positives = 110/210 (52%), Gaps = 22/210 (10%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----P 1064
            I L++V  +Y +   V   K+    I  G+  AL+G SG GKS+V+  + R  D      
Sbjct: 14   ISLQNVTISYGTFEAV---KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70

Query: 1065 TAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE-----GATEAE 1117
              G+V+ DG D+   R++   +R +IG+V Q+P  F  SI++NIA+G       G  +  
Sbjct: 71   LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130

Query: 1118 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 1177
            V  + R A       A+ +  K  + E G  LSGGQ+QR+ IAR +   P ++L+DE  S
Sbjct: 131  VERSLRKA-------AVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCS 183

Query: 1178 ALDAESECVLQEALERLMRGRTTVLVAHRL 1207
            ALD  S   ++E +  L +  T V+V H +
Sbjct: 184  ALDPISTLKIEETMHELKKNFTIVIVTHNM 213

Length = 269

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score =  113 bits (284), Expect = 4e-25
 Identities = 138/558 (24%), Positives = 253/558 (45%), Gaps = 58/558 (10%)

Query: 692  IGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF 751
            IG  LS F+GP   ++++ +++     +PA +       +F  +  G+      L +  +
Sbjct: 311  IGHDLSQFVGP---VILSHLLQSMQEGDPAWVGYVYAFLIFFGVTFGV------LCESQY 361

Query: 752  FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHN--SSLVAARLATDAADVKSAIADRIS 809
            F  +G  +  R+R  ++AAI    +    E   N  S  V   + TDA +    IA+++ 
Sbjct: 362  FQNVGR-VGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDA-NALQQIAEQLH 419

Query: 810  -------VILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTA 862
                    I+ +M  L     VA +    +  L++    L+V     ++L+ +G      
Sbjct: 420  GLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIV--RKMRKLTKEGL----- 472

Query: 863  KAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQF 922
            +   K   I  E ++++ TV  + A  K        +R  +    R+   A +L   + F
Sbjct: 473  QWTDKRVGIINEILASMDTVKCY-AWEKSFESRIQGIRNEELSWFRK---AQLLSAFNSF 528

Query: 923  ALHASEALI--LWYGVHLVGKGVSTFSKV---IKVFVVLVVTANSVAETVSLAPEIIRGG 977
             L++   ++  + +GV ++  G  T ++    + +F VL    N +   +S   +++   
Sbjct: 529  ILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLS---QVVNAN 585

Query: 978  ESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRA 1037
             S+  +   L    RI   +P   P++     I +++  F++ S+       D NL I  
Sbjct: 586  VSLQRIEELLLSEERILAQNP---PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPV 642

Query: 1038 GQSQALVGASGSGKSSVI-ALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPA 1096
            G   A+VG +G GK+S+I A++          V+I G              +  V Q   
Sbjct: 643  GSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGS-------------VAYVPQVSW 689

Query: 1097 LFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 1156
            +F A++ +NI +G +  +E     A     +   +  LP    T +GERGV +SGGQKQR
Sbjct: 690  IFNATVRENILFGSDFESE-RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQR 748

Query: 1157 IAIARAVLKNPAILLLDEATSALDAE-SECVLQEALERLMRGRTTVLVAHRLSTIRGVDC 1215
            +++ARAV  N  I + D+  SALDA  +  V    ++  ++G+T VLV ++L  +  +D 
Sbjct: 749  VSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDR 808

Query: 1216 IGVVQDGRIVEQGSHSEL 1233
            I +V +G I E+G+ +EL
Sbjct: 809  IILVSEGMIKEEGTFAEL 826

Length = 1495

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score =  105 bits (264), Expect = 4e-25
 Identities = 66/222 (29%), Positives = 104/222 (46%), Gaps = 24/222 (10%)

Query: 384 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 443
            D S+    G+ V ++G +G+GK+T+ +LI  FY P++G V+    DI  L       ++
Sbjct: 21  NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIARL 79

Query: 444 GLVN--QEPALFAT-TILENILYG------------KPEATMAEVEAAASAANAHSFITL 488
           G+    Q   LF   T+LEN+  G            +P A   E EA   A     F+ L
Sbjct: 80  GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL 139

Query: 489 LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDR 548
                          LS GQ++R+ IARA+   PK+LLLDE  + L+      + E +  
Sbjct: 140 GE-----LADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRE 194

Query: 549 L--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEE 587
           L    G T +++ H +  +  + D + V+  G+V+  GT EE
Sbjct: 195 LRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236

Length = 250

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score =  110 bits (277), Expect = 5e-25
 Identities = 78/307 (25%), Positives = 135/307 (43%), Gaps = 64/307 (20%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E + ++ S+     V      S+    G+  A++G +G+GKST++ ++   Y P++G +
Sbjct: 9   LELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65

Query: 425 LLDNVDIKTLQLRWLRDQ----IGLVNQEPALFAT-TILENILYGKPEATM-------AE 472
           L+D    K +     RD     I  V+QE +L    ++ ENI  G+ E T          
Sbjct: 66  LIDG---KPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGR-EPTRRFGLIDRKA 121

Query: 473 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 532
           +   A    A   + + P+   T VG+    LS  Q+Q + IARA+  + ++L+LDE T+
Sbjct: 122 MRRRARELLARLGLDIDPD---TLVGD----LSIAQRQMVEIARALSFDARVLILDEPTA 174

Query: 533 ALDAGSESIVQEALDRLMV-----GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG--- 583
           AL    E+   E L  L+      G   + ++HRL  +  + D + V++ G+VV T    
Sbjct: 175 ALTV-KET---ERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTA 230

Query: 584 ---THEELIAKAGAYASLIRFQEMV-RNRDFANPSTRRSRS--TRLS-HSLSTK------ 630
              + +EL+              MV R  +   P           L   +LS        
Sbjct: 231 AETSEDELVRL------------MVGRELEDLFPEPPEEGIGEPVLEVRNLSGGGKVRDV 278

Query: 631 SLSLRSG 637
           S ++R+G
Sbjct: 279 SFTVRAG 285

Length = 500

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  105 bits (262), Expect = 5e-25
 Identities = 71/219 (32%), Positives = 113/219 (51%), Gaps = 9/219 (4%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA---GKVMIDGKDI--RRLNL 1081
            KD ++        A++G SG GKS+V+  I R +D  P+A   GK+++D  DI  R ++ 
Sbjct: 21   KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80

Query: 1082 KSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKT 1140
             S+R ++G+V Q+P  F A SI+DN+  G +        EA           AL +  K 
Sbjct: 81   VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140

Query: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 1200
             +    ++LSGGQ+QR+ IAR +   P ++L+DE  SALD  S   ++E +E L    T 
Sbjct: 141  RLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTI 200

Query: 1201 VLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
            ++V H +    R  D       G +VE G   ++ + P+
Sbjct: 201  IIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239

Length = 252

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score =  105 bits (263), Expect = 6e-25
 Identities = 75/243 (30%), Positives = 124/243 (51%), Gaps = 36/243 (14%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--------- 1077
            V K  +L+  AG   +++G+SGSGKS+ +  I     P+AG + ++G++IR         
Sbjct: 21   VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80

Query: 1078 ----RLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE---GATEAEVVEAARAANVHG 1129
                +  L+ LR ++G+V Q   L++  ++ +N+        G ++AE +E A       
Sbjct: 81   KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKV 140

Query: 1130 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 1189
             ++   +AY          LSGGQ+QR+AIARA+   P ++L DE TSALD E   ++ E
Sbjct: 141  GIAEKADAYP-------AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE---LVGE 190

Query: 1190 ALERLMR-----GRTTVLVAHRLSTIRGVDC-IGVVQDGRIVEQGSHSELVSRPDGAYSR 1243
             L ++M+     GRT V+V H +   R V   +  +  G+I E+G   ++   P     R
Sbjct: 191  VL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQSP--R 247

Query: 1244 LLQ 1246
            L Q
Sbjct: 248  LKQ 250

Length = 256

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score =  103 bits (259), Expect = 7e-25
 Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 8/207 (3%)

Query: 1023 PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 1082
              +    + N+RI  GQ   +VG  G GKSS++  I        GKV    K+    + +
Sbjct: 12   SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71

Query: 1083 SL----RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAY 1138
            +     R  +    Q+P L  A++ +NI +G     +        A ++   +  LP   
Sbjct: 72   ATRSRNRYSVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGD 130

Query: 1139 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE-SECVLQEALERLMRG 1197
            +T +GERG+ LSGGQ+QRI +ARA+ +N  I+ LD+  SALD   S+ ++QE + + ++ 
Sbjct: 131  QTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190

Query: 1198 --RTTVLVAHRLSTIRGVDCIGVVQDG 1222
              RT VLV H+L  +   D I  ++DG
Sbjct: 191  DKRTLVLVTHKLQYLPHADWIIAMKDG 217

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  105 bits (264), Expect = 7e-25
 Identities = 70/254 (27%), Positives = 131/254 (51%), Gaps = 25/254 (9%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +++  +++ Y      +  K  N+ I+ G+  A++G +G+GKS++   +     P++G++
Sbjct: 6    LKVEELNYNYSDGTHAL--KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63

Query: 1070 MIDGK--DIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYG--KEGATEAEVVEAAR 1123
            + DGK  D  R  L  LR  +G+V Q+P   LF+AS++ ++++G       E EV +   
Sbjct: 64   LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123

Query: 1124 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD--- 1180
             A     +  L +    P       LS GQK+R+AIA  ++  P +L+LDE T+ LD   
Sbjct: 124  NALKRTGIEHLKD---KPTH----CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176

Query: 1181 -AESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 1238
             +E   +L E  + L  G T ++  H +  +    D + V+++GR++ QG+  E+ +  +
Sbjct: 177  VSEIMKLLVEMQKEL--GLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 234

Query: 1239 ---GAYSRLLQLQH 1249
                   RL ++ H
Sbjct: 235  MLRKVNLRLPRIGH 248

Length = 283

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  106 bits (265), Expect = 9e-25
 Identities = 87/302 (28%), Positives = 130/302 (43%), Gaps = 59/302 (19%)

Query: 985  STLDRSTRIDPDDPDAEPVETIRGEI------ELRHVDFAYPSRPDVV----------VF 1028
            S  D +   D  D     VET  GE       E    +F   ++  V             
Sbjct: 2    SETDTAGTADASDGTDPEVETTSGESDEQTRDEWTDYEFDGDAKLSVEDLDVYYGDDHAL 61

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA-----GKVMIDGKDIRR--LNL 1081
            K  ++ I      AL+G SG GKS+ +  + R  D        G V +DG+DI +  +NL
Sbjct: 62   KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121

Query: 1082 KSLRLKIGLVQQEPALFAASIFDNIAYG--KEG----------------ATEAEVVEAA- 1122
              LR ++G+V Q P  F  SI +NI+YG  K G                  E E+VE + 
Sbjct: 122  VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSL 181

Query: 1123 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 1182
            R A       AL +     + +  + LSGGQ+QR+ IAR +  +P ++L+DE  SALD  
Sbjct: 182  RQA-------ALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPI 234

Query: 1183 SECVLQEALERLMRGRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236
            +   +++ +E L    T V+V H      R+S    V   G    G +VE     ++   
Sbjct: 235  ATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTG----GELVEYDDTDKIFEN 290

Query: 1237 PD 1238
            P+
Sbjct: 291  PE 292

Length = 305

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  104 bits (260), Expect = 1e-24
 Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 15/211 (7%)

Query: 394 KTVAVVGGSGSGKSTVVSLIERFYD--PN---AGHVLLDNVDI--KTLQLRWLRDQIGLV 446
           +  A +G SG GKST +    R  D  PN    G + +D +D+      +  LR ++G+V
Sbjct: 32  EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMV 91

Query: 447 NQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGER----GV 502
            Q+P  F  +I +N+ YG     +A+ +         S  ++   G   ++G+R      
Sbjct: 92  FQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSV---GLWEELGDRLKDSAF 148

Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL 562
           +LSGGQ+QR+ IARA+   P +LL+DE  SALD  + ++++  +  L    T +VV H +
Sbjct: 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSM 208

Query: 563 STIRNV-DTVAVIQQGQVVETGTHEELIAKA 592
              + V D VA  Q G++VE  T +E+    
Sbjct: 209 KQAKKVSDRVAFFQSGRIVEYNTTQEIFKNP 239

Length = 251

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score =  104 bits (262), Expect = 1e-24
 Identities = 73/214 (34%), Positives = 106/214 (49%), Gaps = 22/214 (10%)

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDI--KTLQLR 437
           D S+  P  +  A +G SG GKST++    R  D   N    G + LD  +I  K + + 
Sbjct: 43  DISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102

Query: 438 WLRDQIGLVNQEPALFATTILENILYG------KPEATMAE-VEAAASAANAHSFITLLP 490
            LR ++G+V Q P  F  +I EN++YG           + E VE +   A        L 
Sbjct: 103 ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAA-------LW 155

Query: 491 NGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 550
           +    ++ E    LSGGQ+QR+ IARA+   P++LLLDE TSALD  S   ++E +  L 
Sbjct: 156 DEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK 215

Query: 551 VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 583
              T V+V H +     V D  A +  G++VE G
Sbjct: 216 SKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYG 249

Length = 272

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score =  103 bits (258), Expect = 1e-24
 Identities = 57/200 (28%), Positives = 93/200 (46%), Gaps = 17/200 (8%)

Query: 393 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI----KTLQLRWLRDQIGLVNQ 448
            +   + G SG+GKST++  I     P+ G ++L+   +    K + L   + +IGLV Q
Sbjct: 23  EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQ 82

Query: 449 EPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV-QLSG 506
           + ALF    + EN+ +G       E   +         +          +  R   QLSG
Sbjct: 83  QYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL--------DHLLNRYPAQLSG 134

Query: 507 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLST 564
           G+KQR+A+ARA+   P++LLLDE  SALD      +   L ++   +    + V H LS 
Sbjct: 135 GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE 194

Query: 565 I-RNVDTVAVIQQGQVVETG 583
                D + V++ G++   G
Sbjct: 195 AEYLADRIVVMEDGRLQYIG 214

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score =  102 bits (257), Expect = 1e-24
 Identities = 57/227 (25%), Positives = 110/227 (48%), Gaps = 24/227 (10%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           ++ +N+T  Y  +         S+    G    ++G +G+GK+T++ ++     P++G +
Sbjct: 1   LQLENLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILE-----NILYGKPEATM-AEVEAAA 477
            +D  D+   Q + LR +IG + QE  ++   T+ E       L G P   + A V+   
Sbjct: 57  RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115

Query: 478 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
              N       L +    ++G     LSGG ++R+ IA+A++ +P IL++DE T+ LD  
Sbjct: 116 ELVN-------LGDRAKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164

Query: 538 SESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 583
                +  L  L   R  ++  H +  + ++ + VAV+ +G++V  G
Sbjct: 165 ERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  104 bits (261), Expect = 1e-24
 Identities = 61/195 (31%), Positives = 99/195 (50%), Gaps = 14/195 (7%)

Query: 369 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 428
           +++ SY  +P      D S+   +G+ V V+G SG GK+T+++LI  F  P+ G + L+ 
Sbjct: 8   HLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66

Query: 429 VDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFIT 487
             I+           G+V Q  AL     +++N+ +G     +  +E A     AH  + 
Sbjct: 67  RRIEGPGAER-----GVVFQNEALLPWLNVIDNVAFG---LQLRGIEKAQRREIAHQMLA 118

Query: 488 LLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALD 547
           L+  G      +   QLSGG +QR+ IARA+   P++LLLDE   ALDA +   +QE L 
Sbjct: 119 LV--GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLL 176

Query: 548 RL--MVGRTTVVVAH 560
            L    G+  +++ H
Sbjct: 177 DLWQETGKQVLLITH 191

Length = 259

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score =  106 bits (267), Expect = 1e-24
 Identities = 74/215 (34%), Positives = 106/215 (49%), Gaps = 19/215 (8%)

Query: 382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 441
             +D S+    G+ V ++G SG GK+T++ +I       AG +     DI  L  +  RD
Sbjct: 19  ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ-KRD 77

Query: 442 QIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGER 500
             G+V Q  ALF   T+ +NI YG     M   E A   A     +     G      + 
Sbjct: 78  -YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----GLPGSERKY 131

Query: 501 GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQE--ALDRLMVGRTTVV 557
             QLSGGQ+QR+A+ARA+  +P +LLLDE  SALDA   E +  E   L R  +G TT++
Sbjct: 132 PGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR-RLGVTTIM 190

Query: 558 VAH----RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
           V H     LS     D + V+  G + + GT +E+
Sbjct: 191 VTHDQEEALSM---ADRIVVMNHGVIEQVGTPQEI 222

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score =  103 bits (259), Expect = 1e-24
 Identities = 61/210 (29%), Positives = 107/210 (50%), Gaps = 25/210 (11%)

Query: 1011 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 1070
            E+  +  +Y   P   V +D +  ++ G+  A+VG +G+GKS+++  I     PT+G + 
Sbjct: 1    EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57

Query: 1071 IDGKDIRRLNLKSLRLKIGLVQQEPAL---FAASIFDNIA---YGKEGATE-AEVVEAAR 1123
            + GK + +      R +IG V Q  ++   F  S+ D +    YG +G        + A+
Sbjct: 58   VFGKPLEK-----ERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112

Query: 1124 AANVHGFV--SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
                   V  S L +     +GE    LSGGQ+QR+ +ARA++++P +LLLDE  + +D 
Sbjct: 113  VDEALERVGLSELADR---QIGE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDP 165

Query: 1182 ESECVLQEALERL-MRGRTTVLVAHRLSTI 1210
            +++  + E L  L   G T ++V H L  +
Sbjct: 166  KTQEDIYELLRELRREGMTILVVTHDLGLV 195

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score =  103 bits (260), Expect = 1e-24
 Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 21/229 (9%)

Query: 1025 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL-KS 1083
            +V   D +  +R G+   L+G +G+GK+++  LI  F  PT+G V+ DG+DI  L   + 
Sbjct: 13   LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72

Query: 1084 LRLKIGLVQQEPALFAA-SIFDNI----------AYGKEGATEAEVVEAARAANVHGFVS 1132
             RL IG   Q P LF   ++ +N+                A   E     RA  +   V 
Sbjct: 73   ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV- 131

Query: 1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVLQEAL 1191
             L +    P GE    LS GQ++R+ IARA+  +P +LLLDE  + L   E+E  L E +
Sbjct: 132  GLADLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETE-ELAELI 186

Query: 1192 ERL-MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 1238
              L  RG T +LV H +  +  + D + V+  GR++ +G+  E+ + P 
Sbjct: 187  RELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPR 235

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score =  104 bits (262), Expect = 1e-24
 Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 17/225 (7%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
            V K+ NL+I  G+  A+ G++GSGK+S++ LI    +P+ GK+   G+            
Sbjct: 52   VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR------------ 99

Query: 1087 KIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERG 1146
             I    Q   +   +I +NI +G     E       +A  +   ++  P    T +GE G
Sbjct: 100  -ISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGG 157

Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVLVAH 1205
            + LSGGQ+ RI++ARAV K+  + LLD     LD  +E  + +  + +LM  +T +LV  
Sbjct: 158  ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTS 217

Query: 1206 RLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPDGAYSRLLQLQH 1249
            ++  ++  D I ++ +G     G+ SEL S RPD + S+L+    
Sbjct: 218  KMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFS-SKLMGYDT 261

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score =  106 bits (267), Expect = 2e-24
 Identities = 71/230 (30%), Positives = 115/230 (50%), Gaps = 20/230 (8%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E + ++ S+  +    +  +  +    G+ + ++G SG GK+TV+ LI  F  P++G +
Sbjct: 15  VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71

Query: 425 LLDNVDIKTL--QLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAAN 481
           +LD  DI  +  + R     +  V Q  ALF   T+ EN+ +G         E       
Sbjct: 72  MLDGQDITHVPAENR----HVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVME 127

Query: 482 AHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
           A   + L       +  +R   QLSGGQ+QR+AIARA++  PK+LLLDE+ SALD     
Sbjct: 128 ALRMVQL------EEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRK 181

Query: 541 IVQEALDRLM--VGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEE 587
            +Q  L  L   +G T V V H +   +   D + V++ G++ + GT  E
Sbjct: 182 QMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231

Length = 375

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score =  103 bits (260), Expect = 2e-24
 Identities = 70/233 (30%), Positives = 111/233 (47%), Gaps = 26/233 (11%)

Query: 1025 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-LKS 1083
            +    D +L +R G+   L+G +G+GK+++  LI  FY P++G V+  G+DI  L   + 
Sbjct: 17   LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76

Query: 1084 LRLKIGLVQQEPALFAA-SIFDNIA--------------YGKEGATEAEVVEAARAANVH 1128
             RL I    Q   LF   ++ +N+A                +    E E  E AR   + 
Sbjct: 77   ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARE--LL 134

Query: 1129 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 1188
             FV     A   P G     LS GQ++R+ IARA+   P +LLLDE  + L+ E    L 
Sbjct: 135  EFVGLGELAD-RPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA 189

Query: 1189 EALERL--MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 1238
            E +  L    G T +L+ H +  + G+ D I V+  G ++ +G+  E+ + P 
Sbjct: 190  ELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPR 242

Length = 250

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score =  101 bits (255), Expect = 2e-24
 Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 46/225 (20%)

Query: 365 IEFKNVTFSYPSRP---DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLI--ERFYDP 419
           + F+N+T +  S P      + ++ S     G+  A++G SG+GKST+++ +   R    
Sbjct: 4   LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63

Query: 420 NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAAS 478
            +G VL++   +     R  R  IG V Q+  L  T T+ E +++               
Sbjct: 64  VSGEVLINGRPLD---KRSFRKIIGYVPQDDILHPTLTVRETLMF--------------- 105

Query: 479 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 538
           AA                   RG  LSGG+++R++IA  ++ NP +L LDE TS LD+ S
Sbjct: 106 AAKL-----------------RG--LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146

Query: 539 ESIVQEALDRLM-VGRTTVVVAHRLST--IRNVDTVAVIQQGQVV 580
              V   L RL   GRT +   H+ S+      D + ++ QG+V+
Sbjct: 147 ALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score =  100 bits (252), Expect = 3e-24
 Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 11/190 (5%)

Query: 374 YPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN--VDI 431
           YP  P+V+  +  +     G+ +A++G +G+GKST++  +     P +G VL+D   +D 
Sbjct: 1   YPGGPEVL--KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58

Query: 432 KTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAANAHSFITLL 489
               L   R ++GLV Q+P   LFA  + +++ +G     ++E E       A + +   
Sbjct: 59  SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS 118

Query: 490 PNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL 549
             G   +       LSGG+K+R+AIA A+   P +LLLDE T+ LD      +   L RL
Sbjct: 119 --GLRERPTH---CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRL 173

Query: 550 MVGRTTVVVA 559
                TVV++
Sbjct: 174 RAEGMTVVIS 183

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  103 bits (260), Expect = 3e-24
 Identities = 71/232 (30%), Positives = 121/232 (52%), Gaps = 12/232 (5%)

Query: 365 IEFKNVTFSY-PSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 422
           I+ +N+T  Y    P +     + +I    G+ V ++G +GSGKST++  +     P +G
Sbjct: 3   IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62

Query: 423 HVLLDNVDI--KTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAAS 478
            +++D VDI  K ++L  +R ++GLV Q P   LF  TI ++I +G     ++E E    
Sbjct: 63  KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122

Query: 479 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD-AG 537
              A + + L    Y  +      +LSGGQK+R+AIA  +   PKIL+LDE T+ LD  G
Sbjct: 123 VKRAMNIVGLDYEDYKDK---SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179

Query: 538 SESIVQEALD-RLMVGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEE 587
            + I+ +  +       T ++V+H +  + +  D + V+ +G+    GT  E
Sbjct: 180 RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231

Length = 287

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score =  101 bits (253), Expect = 3e-24
 Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 20/198 (10%)

Query: 1011 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 1070
             + ++ F+Y    +++   D +L + AG+  AL G +G+GK+++  ++      ++G ++
Sbjct: 1    RIENISFSYKKGTEIL--DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58

Query: 1071 IDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYG-KEGATEAEVVEAA-RAAN 1126
            ++GK I+    K  R  IG V Q+    LF  S+ + +  G KE     E  E   +  +
Sbjct: 59   LNGKPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLD 115

Query: 1127 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 1186
            ++      P +           LSGGQKQR+AIA A+L    +L+ DE TS LD ++   
Sbjct: 116  LYALKERHPLS-----------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMER 164

Query: 1187 LQEALERLMRGRTTVLVA 1204
            + E +  L      V+V 
Sbjct: 165  VGELIRELAAQGKAVIVI 182

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  103 bits (259), Expect = 3e-24
 Identities = 70/250 (28%), Positives = 121/250 (48%), Gaps = 28/250 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE +++ F Y         +  S+  P G   A++G +G+GKST++  +   Y P  G V
Sbjct: 5   IEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYG------KPEATMAEVEAA 476
            +   ++     +W+R ++GLV Q+P   +F++T+ +++ +G        +     VE A
Sbjct: 63  KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122

Query: 477 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
             A     F    P             LS GQK+R+AIA  +  +P +++LDE  + LD 
Sbjct: 123 LKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171

Query: 537 GSESIVQEALDRLMVGRTTVVVA-HRLS-TIRNVDTVAVIQQGQVVETG-----THEELI 589
             +  + E LDRL     TV+VA H +       D V V+++G+V+  G     T E+++
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIV 231

Query: 590 AKAGAYASLI 599
            +AG    L+
Sbjct: 232 EQAGLRLPLV 241

Length = 274

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  102 bits (256), Expect = 4e-24
 Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 23/221 (10%)

Query: 383 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-----HVLLDNVDI-KTLQL 436
            +  ++  PA +  A++G SG GKST++  + R  D   G      + +D  DI   + +
Sbjct: 19  LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78

Query: 437 RWLRDQIGLVNQEPALFATTILENILYG------KPEATMAEV--EAAASAANAHSFITL 488
             LR ++G+V Q+P  F  +I EN+ YG      K +  + EV   +   AA        
Sbjct: 79  ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAA-------- 130

Query: 489 LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDR 548
           L +    ++      LSGGQ+QR+ IAR +   P ++L+DE TSALD  +   ++E ++ 
Sbjct: 131 LWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEE 190

Query: 549 LMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
           L    T V+V H +   R + D  A    G++VE    + +
Sbjct: 191 LKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231

Length = 249

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score =  102 bits (255), Expect = 4e-24
 Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 21/229 (9%)

Query: 365 IEFKNVTFSYPS-RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           ++ +N+   Y   + D  + +  S+    G+ VA+VG SGSGKST++ L+    +P +G 
Sbjct: 2   LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61

Query: 424 VLLDNVDIKTL---QLRWLRDQ-IGLVNQEPALFAT-TILENI----LYGKPEATMAEVE 474
           VL +   +  L   +   LR++ +G + Q   L    T LEN+    L GK     +  E
Sbjct: 62  VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK----KSVKE 117

Query: 475 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
           A   A        L   G   ++  R  +LSGG++QR+AIARA++  P ++L DE T  L
Sbjct: 118 AKERAYE-----MLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNL 172

Query: 535 DAGSESIVQEALDRLMVGRTT--VVVAHRLSTIRNVDTVAVIQQGQVVE 581
           D  +  I+ + +  L     T  +VV H L   + +D V  ++ GQ+  
Sbjct: 173 DNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score =  109 bits (274), Expect = 5e-24
 Identities = 78/257 (30%), Positives = 128/257 (49%), Gaps = 20/257 (7%)

Query: 993  IDPDDPDAEPVETIRG-EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGK 1051
            ++PD  +   ++   G  I + +  F + +R            I  G   A+VG  G GK
Sbjct: 619  LEPDSIERRTIKPGEGNSITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGK 677

Query: 1052 SSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE 1111
            SS+++ +    D   G V + G              +  V Q+  +   S+ +NI +GK 
Sbjct: 678  SSLLSALLAEMDKVEGHVHMKGS-------------VAYVPQQAWIQNDSLRENILFGKA 724

Query: 1112 GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILL 1171
               E    +   A  +   +  LP+  +T +GE+GV LSGGQKQR+++ARAV  N  I L
Sbjct: 725  -LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYL 783

Query: 1172 LDEATSALDAE-SECVLQEAL--ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 1228
             D+  SA+DA   + + +  +  E +++ +T +LV H +S +  VD I V+  G+I E G
Sbjct: 784  FDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMG 843

Query: 1229 SHSELVSRPDGAYSRLL 1245
            S+ EL+ R DGA++  L
Sbjct: 844  SYQELLQR-DGAFAEFL 859

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score =  101 bits (252), Expect = 6e-24
 Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 28/229 (12%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            + L  + F+Y  +P       F+L    G+  A+VG SGSGKS+++ LI  F  P +G+V
Sbjct: 1    VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG-----KEGATEAEVVE-AA 1122
            +I+G D+           + ++ QE  LFA  ++  N+  G     K  A + + +E A 
Sbjct: 56   LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113

Query: 1123 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 1182
                + G    LP            +LSGG++QR+A+AR ++++  +LLLDE  +ALD  
Sbjct: 114  ARVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162

Query: 1183 SECVLQEALERL--MRGRTTVLVAHRLSTIRGVDCIGV-VQDGRIVEQG 1228
                + + +  L      T ++V H+    + +    V + +GRI  QG
Sbjct: 163  LRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  102 bits (255), Expect = 6e-24
 Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 28/230 (12%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG-----KVMIDGKDI--RRLNL 1081
            +D ++ IR  +    +G SG GKS+V+  + R  D   G      V   G+D+  + ++ 
Sbjct: 25   RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84

Query: 1082 KSLRLKIGLVQQEPALFAASIFDNIAYG-----KEGATEAEVVEAARAANVHGFVSALPN 1136
              +R  IG+V Q+P  F+ SIFDN+A+G      +G     V  A + A       AL +
Sbjct: 85   VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGA-------ALWD 137

Query: 1137 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 1196
              K  +   G+ LSGGQ+QR+ IARA+   P +LLLDE  SALD  +   ++E +  L +
Sbjct: 138  EVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK 197

Query: 1197 GRTTVLVAHRLSTIRGVD------CIGVVQDGR---IVEQGSHSELVSRP 1237
              T  LV H +     V        + + Q  R   +VE G  +++   P
Sbjct: 198  DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNP 247

Length = 261

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  102 bits (257), Expect = 7e-24
 Identities = 75/258 (29%), Positives = 124/258 (48%), Gaps = 24/258 (9%)

Query: 365 IEFKNVTFSY-PSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 422
           I F+ V   Y    P +     D ++  P+G  VA++G +GSGKST++  +     P +G
Sbjct: 3   ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62

Query: 423 HVLLDNVDI----KTLQLRWLRDQIGLVNQ--EPALFATTILENILYGKPEATMAEVEAA 476
            V +    I    K  +L+ LR ++G+V Q  E  LF  T+ ++I +G     ++E +A 
Sbjct: 63  TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAK 122

Query: 477 ASAANAHSFITLLPNGYSTQVGERG-VQLSGGQKQRIAIARAMLKNPKILLLDEATSALD 535
             A      I L+  G   ++  R   +LSGGQ +R+AIA  +   P++L+LDE T+ LD
Sbjct: 123 QKAREM---IELV--GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177

Query: 536 AGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 592
                 + E   +L    G TTV+V H +       D + V+ +G V   GT  E+ A  
Sbjct: 178 PKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237

Query: 593 GAYASL-------IRFQE 603
               ++       ++F+ 
Sbjct: 238 DELEAIGLDLPETVKFKR 255

Length = 290

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  102 bits (257), Expect = 7e-24
 Identities = 70/215 (32%), Positives = 111/215 (51%), Gaps = 18/215 (8%)

Query: 1030 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR----RLNLKSLR 1085
            D NL I  G   A +G +GSGKS+++ L+   + PT G V +D   I       ++K +R
Sbjct: 25   DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIR 84

Query: 1086 LKIGLVQQ--EPALFAASIFDNIAYGKE--GATEAEVVEAARAA-NVHGFVSALPNAYKT 1140
             K+GLV Q  E  LF  ++  ++A+G +  G ++ E    AR    + G   +L    K 
Sbjct: 85   KKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFE--KN 142

Query: 1141 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRT 1199
            P      +LSGGQ +R+AIA  +   P IL+LDE T+ LD +    L    ++L + G T
Sbjct: 143  P-----FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMT 197

Query: 1200 TVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 1233
             VLV H +  +    D + V++ G++V  G   ++
Sbjct: 198  IVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232

Length = 280

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score =  101 bits (252), Expect = 7e-24
 Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 16/178 (8%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 1083
            D  +  + +L +RAG+  A+ G SG GKS+++ ++     PT+G ++ +G+D+  L  ++
Sbjct: 15   DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74

Query: 1084 LRLKIGLVQQEPALFAASIFDNI-----AYGKEGATEAEVVEAARAANVHGFVSALPNAY 1138
             R ++    Q PALF  ++ DN+        +     A +   AR A     ++      
Sbjct: 75   YRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILT------ 128

Query: 1139 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 1196
                 +   +LSGG+KQRIA+ R +   P ILLLDE TSALD  ++  ++E + R +R
Sbjct: 129  -----KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR 181

Length = 223

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score =  101 bits (254), Expect = 7e-24
 Identities = 74/220 (33%), Positives = 115/220 (52%), Gaps = 29/220 (13%)

Query: 392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL-------------QLRW 438
           AG  ++++G SGSGKST +  I     P+ G ++++   I  +             QLR 
Sbjct: 30  AGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRL 89

Query: 439 LRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV 497
           LR ++ +V Q   L++  T+LEN++    EA +  +  +   A   +   L   G   + 
Sbjct: 90  LRTRLTMVFQHFNLWSHMTVLENVM----EAPIQVLGLSKQEARERAVKYLAKVGIDERA 145

Query: 498 -GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV----- 551
            G+  V LSGGQ+QR++IARA+   P++LL DE TSALD     +V E L R+M      
Sbjct: 146 QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP---ELVGEVL-RIMQQLAEE 201

Query: 552 GRTTVVVAHRLSTIRNVDT-VAVIQQGQVVETGTHEELIA 590
           G+T VVV H +   R+V + V  + QG++ E G  E+L  
Sbjct: 202 GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241

Length = 257

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  101 bits (254), Expect = 8e-24
 Identities = 68/240 (28%), Positives = 122/240 (50%), Gaps = 27/240 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----P 419
           IE +N+   +    D  I ++ ++  P     A++G SG GKST +  + R  D      
Sbjct: 4   IEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60

Query: 420 NAGHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMA 471
           + GH+ LD VDI    + +  LR ++G+V Q+P  F  +I +N+ YG        E  + 
Sbjct: 61  HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120

Query: 472 EV--EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 529
           E   E+  +AA        L +    ++ +  + LSGGQ+QR+ IAR +  +P+++L+DE
Sbjct: 121 ERVEESLKAAA--------LWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDE 172

Query: 530 ATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDT-VAVIQQGQVVETGTHEEL 588
             SALD  S + +++ + +L    T V+V H +     V    +    G+++E+G  +++
Sbjct: 173 PCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232

Length = 250

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  101 bits (253), Expect = 8e-24
 Identities = 65/194 (33%), Positives = 97/194 (50%), Gaps = 19/194 (9%)

Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA---GKVMIDGKDIRRLNLK 1082
             K  +L     +  AL+G SG GKS+ +  + R  D  P     G V + G++I   N  
Sbjct: 21   LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80

Query: 1083 S--LRLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEVVEAARAANVHGFVSAL 1134
               LR ++G+V Q+P  F  SI++N+ YG      K+ A   E VE +         +A+
Sbjct: 81   VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQ------AAI 134

Query: 1135 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 1194
             +  K  + E  + LSGGQ+QR+ IAR +   P ++LLDE TSALD  S   ++  L  L
Sbjct: 135  WDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL 194

Query: 1195 MRGRTTVLVAHRLS 1208
                T +LV H + 
Sbjct: 195  RDQYTIILVTHSMH 208

Length = 252

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  102 bits (255), Expect = 9e-24
 Identities = 72/241 (29%), Positives = 117/241 (48%), Gaps = 24/241 (9%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            I  ++V F Y S       KD +  I  GQ  ++VG +GSGKS++  L+       +G++
Sbjct: 8    IVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPA-LFAASI--FDNIAYGKEGAT------EAEVVE 1120
              + + I   N + LR  IG+V Q P   F  SI  +D +A+G E            V E
Sbjct: 67   FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYD-VAFGLENHAVPYDEMHRRVSE 125

Query: 1121 AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 1180
            A +  ++       PNA           LSGGQKQR+AIA  +  NP++++LDEATS LD
Sbjct: 126  ALKQVDMLERADYEPNA-----------LSGGQKQRVAIAGVLALNPSVIILDEATSMLD 174

Query: 1181 AESECVLQEALERLMRGR--TTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
             ++   L + + ++      T + + H LS     D + V+  G + ++G+ +E+    +
Sbjct: 175  PDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAE 234

Query: 1239 G 1239
             
Sbjct: 235  E 235

Length = 269

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score =  109 bits (273), Expect = 9e-24
 Identities = 63/213 (29%), Positives = 114/213 (53%), Gaps = 15/213 (7%)

Query: 1026 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 1085
            V+ +D ++ +  G+   ++GA+GSGKS+++  +   ++ + G+V  +         +S  
Sbjct: 674  VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE---------RS-- 722

Query: 1086 LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGER 1145
              I  V Q+  +  A++  NI +  E    A + +A R + +   ++ L    +T +GE+
Sbjct: 723  --IAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEK 779

Query: 1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE-SECVLQEALERLMRGRTTVLVA 1204
            GV LSGGQK R+++ARAV  N  + LLD+  SALDA   E V++E     + G+T VL  
Sbjct: 780  GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLAT 839

Query: 1205 HRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
            H++  +   D +  + DGR+   GS ++ +   
Sbjct: 840  HQVHVVPRADYVVALGDGRVEFSGSSADFMRTS 872

Length = 1560

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score =  101 bits (253), Expect = 9e-24
 Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 24/234 (10%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           I+   +   Y +        D ++  P G+T+ ++G SG+GKS+++ ++     P +G +
Sbjct: 3   IQLNGINCFYGAHQ---ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59

Query: 425 LLDN--VDIKTL----QLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAA 477
            +     D         +R LR  +G+V Q+  L+   T+ EN++    EA    +  + 
Sbjct: 60  NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLI----EAPCRVLGLSK 115

Query: 478 SAANAHSFITLLPNGYSTQVGER-GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD- 535
             A A +   LL         +R  + LSGGQ+QR+AIARA++  P++LL DE T+ALD 
Sbjct: 116 DQALARA-EKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174

Query: 536 ---AGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDT-VAVIQQGQVVETGTH 585
              A   SI++E  +    G T V+V H +   R   + V  ++ G +VE G  
Sbjct: 175 EITAQIVSIIKELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225

Length = 242

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  102 bits (255), Expect = 9e-24
 Identities = 75/236 (31%), Positives = 123/236 (52%), Gaps = 21/236 (8%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +E+ ++ F Y    DV      +  I  G+  +++G +GSGKS+   LI+  ++   GKV
Sbjct: 5    LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAEVV----EA 1121
             IDG+ +   N+ +LR KIG+V Q P      A++ D++A+G E  G    E++    EA
Sbjct: 65   KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124

Query: 1122 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
              A N+  F +  P            +LSGGQKQR+A+A  +   P I++LDE+TS LD 
Sbjct: 125  LLAVNMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173

Query: 1182 ESECVLQEALERLM-RGRTTVL-VAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 1235
                 +   +  +  + + TVL + H L      D I V++ G I+++ + SEL +
Sbjct: 174  TGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229

Length = 277

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score =  100 bits (252), Expect = 1e-23
 Identities = 77/238 (32%), Positives = 113/238 (47%), Gaps = 33/238 (13%)

Query: 1026 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV-----MIDGKDIRRLN 1080
             V    +L ++ G+  A++G SGSGK++++  I     P AG +      ID    R L+
Sbjct: 17   TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTA--RSLS 74

Query: 1081 -----LKSLRLKIGLVQQEPALFA-ASIFDNIAYGK---EGATEAEVVEAARAANVHGFV 1131
                 ++ LR  +G V Q   LF   ++ +NI  G    +G  + E    AR       +
Sbjct: 75   QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL 134

Query: 1132 SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE-----SECV 1186
            +    +Y         +LSGGQ+QR+AIARA+   P ++L DE TSALD E        +
Sbjct: 135  AGKETSYPR-------RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTI 187

Query: 1187 LQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD-GRIVEQGSHSELVSRPDGAYSR 1243
             Q A E+    RT V+V H +S  R V    +  D GRIVEQG    L + P    +R
Sbjct: 188  RQLAQEK----RTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTR 241

Length = 250

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  101 bits (252), Expect = 1e-23
 Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 27/244 (11%)

Query: 1011 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PT 1065
            E+  ++F Y         K+ N+ +   Q  AL+G SG GKS+ +    R +D       
Sbjct: 18   EVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHY 74

Query: 1066 AGKVMI--DGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-------KEGAT 1114
             G++++  D  +I    ++   +R++I +V Q+P  F  SIF+N+AYG       +    
Sbjct: 75   EGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSIL 134

Query: 1115 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 1174
            E  V  A R A       AL +  K  +G+    LSGGQ+QR+ IARA+  +P ILL DE
Sbjct: 135  EERVENALRNA-------ALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDE 187

Query: 1175 ATSALDAESECVLQEALERLMRGRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSEL 1233
             TSALD  +   ++E +  L    T ++V H +    R  D    +  G ++E G+   +
Sbjct: 188  PTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247

Query: 1234 VSRP 1237
              +P
Sbjct: 248  FIKP 251

Length = 265

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 99.6 bits (249), Expect = 2e-23
 Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 14/223 (6%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E +NVT  + +   +    D ++    G+ V ++G SG GK+T + +I    +P +G +
Sbjct: 1   VELENVTKRFGNVTAL---DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAH 483
            +   D+  L  +  RD I +V Q  AL+   T+ +NI +G     + +V          
Sbjct: 58  YIGGRDVTDLPPK-DRD-IAMVFQNYALYPHMTVYDNIAFG---LKLRKVPKDEIDERVR 112

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
               LL       +  +  QLSGGQ+QR+A+ RA+++ PK+ L+DE  S LDA     ++
Sbjct: 113 EVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR 170

Query: 544 EALDRLM--VGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETG 583
             L RL   +G TT+ V H ++  +   D +AV+  GQ+ + G
Sbjct: 171 AELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score =  101 bits (253), Expect = 2e-23
 Identities = 72/221 (32%), Positives = 107/221 (48%), Gaps = 23/221 (10%)

Query: 384 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDI--KTLQL 436
            D  +  P     A +G SG GKST +  + R  D        G + LD  DI    L +
Sbjct: 36  FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95

Query: 437 RWLRDQIGLVNQEPALFATTILENILYG-------KPEATMAE-VEAAASAANAHSFITL 488
             LR ++G+V Q+P  F  +I EN+ YG       + +A + E VE +   A        
Sbjct: 96  VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAG------- 148

Query: 489 LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDR 548
           L      ++ E G  LSGGQ+QR+ IARA+  +P+++L+DE  SALD  + + V+E +D 
Sbjct: 149 LWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDE 208

Query: 549 LMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
           L    T V+V H +     V    A    G +VE G  E++
Sbjct: 209 LRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKM 249

Length = 267

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 99.2 bits (247), Expect = 2e-23
 Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 34/228 (14%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +    V + Y   P       F +    G+ VA++G SG+GKST+++LI  F +P +G +
Sbjct: 1   LALDKVRYEYEHLP----ME-FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG-----KPEATMAE-VEAAA 477
            +++     L     +  + ++ QE  LFA  T+ +NI  G     K  A   E V  AA
Sbjct: 56  KVNDQSHTGLAPY--QRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA 113

Query: 478 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
                  ++  LP            QLSGGQ+QR+A+AR +++   ILLLDE  SALD  
Sbjct: 114 QQVGIADYLDRLPE-----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALD-- 160

Query: 538 SESIVQEALDRLMV-----GRTTVVVAHRLS-TIRNVDTVAVIQQGQV 579
              + +E L  +        RT ++V H LS        +AV+ QG++
Sbjct: 161 -PLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score =  100 bits (251), Expect = 2e-23
 Identities = 66/220 (30%), Positives = 106/220 (48%), Gaps = 17/220 (7%)

Query: 384 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 443
            D S     G+   ++G +G+GK+T+ +LI  F  P +G VL D  DI  L       ++
Sbjct: 17  DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH-EIARL 75

Query: 444 GLV--NQEPALFAT-TILENIL--------YGKPEATMAEVEAAASAANAHSFITLLPNG 492
           G+    Q P LF   T+LEN++         G   A     E  A    A   +  +  G
Sbjct: 76  GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARER-AEELLERV--G 132

Query: 493 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV- 551
            +        +LS GQ++R+ IARA+  +PK+LLLDE  + L+      + E +  L   
Sbjct: 133 LADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER 192

Query: 552 GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 590
           G T ++V H +  + ++ D V V+ QG+V+  GT +E+  
Sbjct: 193 GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score =  100 bits (252), Expect = 2e-23
 Identities = 71/240 (29%), Positives = 118/240 (49%), Gaps = 34/240 (14%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKST---VVSLIERFYDPNA 421
           I+   +   Y +     +F D ++  P G+T+ ++G SG+GKS+   V++L+E    P +
Sbjct: 3   IQLNGINCFYGA--HQALF-DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRS 56

Query: 422 GHV--------LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAE 472
           G +               K   +R LR  +G+V Q+  L+   T+ +N++    EA    
Sbjct: 57  GTLNIAGNHFDFSKTPSDK--AIRELRRNVGMVFQQYNLWPHLTVQQNLI----EAPCRV 110

Query: 473 VEAAASAANAHSFITLLPNGYSTQVGER-GVQLSGGQKQRIAIARAMLKNPKILLLDEAT 531
           +  +   A A +   LL         +R  + LSGGQ+QR+AIARA++  P++LL DE T
Sbjct: 111 LGLSKDQALARA-EKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169

Query: 532 SALD----AGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDT-VAVIQQGQVVETGTHE 586
           +ALD    A   SI++E  +    G T V+V H +   R   + V  ++ G +VE G   
Sbjct: 170 AALDPEITAQIVSIIRELAE---TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226

Length = 242

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score =  103 bits (258), Expect = 2e-23
 Identities = 68/208 (32%), Positives = 105/208 (50%), Gaps = 15/208 (7%)

Query: 391 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI----KTLQLRWLRDQIGLV 446
           P     A+ G SGSGK+T++ LI     P+ G ++L+   +    K + L   + +IG V
Sbjct: 21  PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80

Query: 447 NQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 505
            QE  LF   ++  N+ YG     M     +    +    I LL  G    +G    +LS
Sbjct: 81  FQEARLFPHLSVRGNLRYG-----MKRARPSERRISFERVIELL--GIGHLLGRLPGRLS 133

Query: 506 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLS 563
           GG+KQR+AI RA+L +P++LL+DE  +ALD   +  +   L+RL    G   + V+H L 
Sbjct: 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ 193

Query: 564 TI-RNVDTVAVIQQGQVVETGTHEELIA 590
            + R  D V V++ G+V   G   E+ A
Sbjct: 194 EVLRLADRVVVLEDGRVAAAGPIAEVWA 221

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score =  100 bits (250), Expect = 3e-23
 Identities = 69/218 (31%), Positives = 110/218 (50%), Gaps = 29/218 (13%)

Query: 389 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-----AGHVLLDNVDI-----KTLQLRW 438
           F+P   T A++G SGSGKST++  I R  D N      G ++ +  +I      T+ LR 
Sbjct: 28  FYPNEIT-ALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLR- 85

Query: 439 LRDQIGLVNQEPALFATTILENILYG------KPEATMAE-VEAAASAANAHSFITLLPN 491
              +IG+V Q+P  F  +I EN++YG      K +  + E VE +   A+       + +
Sbjct: 86  --KEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGAS-------IWD 136

Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV 551
               ++ +  + LSGGQ+QR+ IAR +  +PKI+LLDE TSALD  S   ++E L  L  
Sbjct: 137 EVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD 196

Query: 552 GRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEEL 588
             T ++V   +    R  D       G ++E    +++
Sbjct: 197 DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234

Length = 252

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score =  102 bits (257), Expect = 3e-23
 Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 14/228 (6%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E +N+T S+  +  V    D S+    G+  A++G SG GKST++ ++  F  P AG +
Sbjct: 20  LEIRNLTKSFDGQHAV---DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI 76

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAH 483
           +LD VD+    +   +  I ++ Q  ALF   T+ +NI +G  +  + + E A+      
Sbjct: 77  MLDGVDLS--HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEML 134

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
             + +           +  QLSGGQ+QR+A+AR++ K PK+LLLDE   ALD      +Q
Sbjct: 135 GLVHMQEFA-----KRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQ 189

Query: 544 -EALDRL-MVGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
            E +D L  VG T V+V H +   +     +A++ +G+ V+ G  EE+
Sbjct: 190 LEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237

Length = 377

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 99.3 bits (248), Expect = 3e-23
 Identities = 63/214 (29%), Positives = 112/214 (52%), Gaps = 20/214 (9%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN--- 1080
            D  V K  +L I  G+  A+VG+SGSGKS+++ L+    +PT+G+V+ +G+ + +L+   
Sbjct: 17   DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76

Query: 1081 LKSLR-LKIGLVQQEPALFAA-SIFDNIAY----GKEGATEAEVVEAARAANVHGFVSAL 1134
               LR  K+G + Q   L    +  +N+A     GK+   EA+         V       
Sbjct: 77   RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVG------ 130

Query: 1135 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 1194
                +  +  R  +LSGG++QR+AIARA++  P+++L DE T  LD  +  ++ + +  L
Sbjct: 131  ---LEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187

Query: 1195 MRGRTT--VLVAHRLSTIRGVDCIGVVQDGRIVE 1226
             R   T  ++V H L   + +D +  ++DG++  
Sbjct: 188  NRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 99.2 bits (247), Expect = 3e-23
 Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 24/219 (10%)

Query: 379 DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW 438
           D  I  + S+   AG+ +A+ G SG GKST++ ++     P +G +L +  D+ TL+   
Sbjct: 15  DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74

Query: 439 LRDQIGLVNQEPALFATTILENILY------GKPEATMAEVEAAASAANAHSFITLLPNG 492
            R Q+    Q PALF  T+ +N+++       +P+   A ++  A  A   S +T     
Sbjct: 75  YRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAA-LDLLARFALPDSILT----- 128

Query: 493 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV- 551
                 +   +LSGG+KQRIA+ R +   PKILLLDE TSALD  ++  ++E + R +  
Sbjct: 129 ------KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVRE 182

Query: 552 -GRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
                + + H +   IR+ D V  +Q G     G  +E 
Sbjct: 183 QNVAVLWITHDKDQAIRHADKVITLQPGHA---GEMQEA 218

Length = 223

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score =  102 bits (256), Expect = 3e-23
 Identities = 69/219 (31%), Positives = 113/219 (51%), Gaps = 19/219 (8%)

Query: 1030 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI----RRLNLKSLR 1085
            D +  +      A+ G SGSGK+++I LI     P  G+++++G+ +    + + L   +
Sbjct: 15   DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74

Query: 1086 LKIGLVQQEPALFA-ASIFDNIAYGKEGATEAE-VVEAARAANVHGFVSALPNAYKTPVG 1143
             +IG V QE  LF   S+  N+ YG + A  +E  +   R   + G            + 
Sbjct: 75   RRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGI---------GHLL 125

Query: 1144 ERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTT 1200
             R   +LSGG+KQR+AI RA+L +P +LL+DE  +ALD   +  +   LERL    G   
Sbjct: 126  GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185

Query: 1201 VLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
            + V+H L  + R  D + V++DGR+   G  +E+ + PD
Sbjct: 186  LYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score =  100 bits (250), Expect = 4e-23
 Identities = 69/212 (32%), Positives = 101/212 (47%), Gaps = 22/212 (10%)

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDI--KTLQLR 437
              + F   K  A++G SGSGKST +  + R  D    A   G +L   +DI  K + + 
Sbjct: 38  GIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97

Query: 438 WLRDQIGLVNQEPALFATTILENILYG------KPEATMAE-VEAAASAANAHSFITLLP 490
            +R  IG+V Q P  FA +I ENI +       K +  + E VE +   A        L 
Sbjct: 98  EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAA-------LW 150

Query: 491 NGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 550
           +     + +  + LSGGQ+QR+ IARA+   P ILL+DE  SALD  S   ++E +  L 
Sbjct: 151 DQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK 210

Query: 551 VGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVE 581
              T ++V H +    R  D  A    G ++E
Sbjct: 211 KNYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242

Length = 267

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score =  100 bits (249), Expect = 4e-23
 Identities = 69/215 (32%), Positives = 116/215 (53%), Gaps = 11/215 (5%)

Query: 384 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDI--KTLQL 436
           +D S+ FP     A++G SG GKSTV+  I R +D  P+A   G +LLD+ DI  + +  
Sbjct: 21  KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80

Query: 437 RWLRDQIGLVNQEPALF-ATTILENILYG-KPEATMAEVEAAASAANAHSFITLLPNGYS 494
             +R ++G+V Q+P  F A +I +N++ G K    +   EA     ++   + L  +   
Sbjct: 81  VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALW-DEVK 139

Query: 495 TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRT 554
            ++    ++LSGGQ+QR+ IAR +   P+++L+DE  SALD  S   ++E ++ L    T
Sbjct: 140 DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYT 199

Query: 555 TVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
            ++V H +     V D  A    G +VE G  +++
Sbjct: 200 IIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKI 234

Length = 252

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score =  106 bits (267), Expect = 4e-23
 Identities = 71/225 (31%), Positives = 116/225 (51%), Gaps = 17/225 (7%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
            V K+ + ++  GQ  A+ G++GSGKSS++ +I    +P+ GK+   G+            
Sbjct: 441  VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR------------ 488

Query: 1087 KIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERG 1146
             I    Q   +   +I DNI +G     E       +A  +   ++  P   KT +GE G
Sbjct: 489  -ISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGG 546

Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVLVAH 1205
            + LSGGQ+ RI++ARAV K+  + LLD   + LD  +E  + +  L +LM  +T +LV  
Sbjct: 547  ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTS 606

Query: 1206 RLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPDGAYSRLLQLQH 1249
            +L  ++  D I ++ +G     G+ SEL + RPD + S LL L+ 
Sbjct: 607  KLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFS-SLLLGLEA 650

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 99.0 bits (247), Expect = 4e-23
 Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 13/225 (5%)

Query: 1010 IELRHVDFAYPS-RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            IE+ H+         ++ + K   L ++ G++ A+VG SGSGKS+++A++    DP++G+
Sbjct: 7    IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66

Query: 1069 VMIDGKDIRRLN---LKSLRLK-IGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAAR 1123
            V + G+ + +L+     +LR + +G V Q   L    +  +N+A   E   E+     A 
Sbjct: 67   VRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG 126

Query: 1124 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
            A  +   V         P      QLSGG++QR+A+ARA    P +L  DE T  LD  +
Sbjct: 127  AKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT 181

Query: 1184 ECVLQEALERLMRGR--TTVLVAHRLSTIRGVDCIGVVQDGRIVE 1226
               + + L  L R R  T VLV H        D    ++ GR+VE
Sbjct: 182  GDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226

Length = 228

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 99.3 bits (247), Expect = 5e-23
 Identities = 71/232 (30%), Positives = 108/232 (46%), Gaps = 11/232 (4%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PN-- 420
           I  K+V  SY    +       S+ F   +  A++G SG GKST +  + R  D   N  
Sbjct: 5   ISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61

Query: 421 -AGHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAA 477
             G +  +  +I    + L  LR ++G+V Q+P  F  ++ +N+ YG   A + + E   
Sbjct: 62  ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121

Query: 478 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
                      +       +       SGGQ+QRI IARA+   PK++LLDE TSALD  
Sbjct: 122 QRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPI 181

Query: 538 SESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
           S S ++E L  L    T ++V H L     + D  A +  G ++E G  EE+
Sbjct: 182 SSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233

Length = 251

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 99.9 bits (249), Expect = 5e-23
 Identities = 69/240 (28%), Positives = 110/240 (45%), Gaps = 24/240 (10%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE R  D  Y          + N         A++G +G+GKS++         PT+G V
Sbjct: 4    IETR--DLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYG------KEGATEAEVVEA 1121
            +I G+ I + N++ +R  +GLV Q P   +F+ ++  +IA+G       E      V  A
Sbjct: 62   LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121

Query: 1122 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
                 +      +P+            LSGG+K+R+AIA  +   P +L+LDE T+ LD 
Sbjct: 122  LHMLGLEELRDRVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170

Query: 1182 ESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 1238
            +    L + L  L    G T +   H+L  +  + D I V+  GRIV  G+  E+  +PD
Sbjct: 171  QGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230

Length = 277

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 99.3 bits (247), Expect = 6e-23
 Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 23/238 (9%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA- 421
           +E KN+   Y  +       D ++     K  A++G SG GKST +  + R  D   N  
Sbjct: 5   MESKNLNLWYGEKQ---ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61

Query: 422 --GHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMA 471
             G VLLD  +I  K + +  LR ++G+V Q+P  F  +I +N+ YG      K +  + 
Sbjct: 62  IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELD 121

Query: 472 EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT 531
           ++   A    A      L +     + +  ++LSGGQ+QR+ IAR +   P ++L+DE T
Sbjct: 122 KIVEWALKKAA------LWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPT 175

Query: 532 SALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
           SALD  S   +++ +  L    T V+V H +     V D  A    G ++E    E++
Sbjct: 176 SALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233

Length = 251

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score =  100 bits (250), Expect = 6e-23
 Identities = 72/232 (31%), Positives = 122/232 (52%), Gaps = 18/232 (7%)

Query: 365 IEFKNVTFSYPSRPDV---IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 421
           I  +NV+++Y +        +F D ++    G   A +G +GSGKST++ L+   + P  
Sbjct: 3   INLQNVSYTYQAGTPFEGRALF-DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61

Query: 422 GHVLLDNVDI----KTLQLRWLRDQIGLVNQ--EPALFATTILENILYGKPEATMAEVEA 475
           G V +D+  I    K   ++ +R ++GLV Q  E  LF  T+L+++ +G     +++ EA
Sbjct: 62  GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEA 121

Query: 476 AASAANAHSFITLLPNGYSTQVGERG-VQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
            A A    + +     G S  + E+   +LSGGQ +R+AIA  +   PKIL+LDE T+ L
Sbjct: 122 EALAREKLALV-----GISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176

Query: 535 DAGSESIVQEALDRL-MVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT 584
           D      +     +L   G T V+V H +  + N  D V V+++G++V +G 
Sbjct: 177 DPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228

Length = 280

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score =  103 bits (258), Expect = 1e-22
 Identities = 77/247 (31%), Positives = 125/247 (50%), Gaps = 28/247 (11%)

Query: 365 IEFKNVTFSYPS-----RPDVIIFR---DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF 416
           +E +++   +P      R  V   R     S+    G+T+ +VG SGSGKST+   + R 
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336

Query: 417 YDPNAGHVLLDNVDIKTL---QLRWLRDQIGLVNQEP--AL-----FATTILENILYGKP 466
             P+ G +  D  DI  L   ++R LR ++ +V Q+P  +L         I E +   +P
Sbjct: 337 -IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP 395

Query: 467 EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILL 526
           + + AE +     A     + L P   +    E     SGGQ+QRIAIARA++  P+++L
Sbjct: 396 KLSAAERDQRVIEA-LEE-VGLDPATRNRYPHE----FSGGQRQRIAIARALILKPELIL 449

Query: 527 LDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 583
           LDE TSALD   ++ V + L  L    G + + ++H L+ +R +   V V++ G++VE G
Sbjct: 450 LDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509

Query: 584 THEELIA 590
             E + A
Sbjct: 510 PTEAVFA 516

Length = 534

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 97.9 bits (244), Expect = 1e-22
 Identities = 54/188 (28%), Positives = 99/188 (52%), Gaps = 11/188 (5%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            ++L++V +         +  + +  +RAG+ + + G SG GKS+++ ++     PT+G +
Sbjct: 8    LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHG 1129
            + +G+DI  L  +  R ++    Q P LF  +++DN+ +  +   +     A    ++  
Sbjct: 65   LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQ-PDPAIFLDDLER 123

Query: 1130 FVSALP-NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 1188
            F  ALP       + E    LSGG+KQRI++ R +   P +LLLDE TSALD  ++  + 
Sbjct: 124  F--ALPDTILTKNIAE----LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177

Query: 1189 EALERLMR 1196
            E + R +R
Sbjct: 178  EIIHRYVR 185

Length = 225

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score =  103 bits (258), Expect = 1e-22
 Identities = 65/230 (28%), Positives = 121/230 (52%), Gaps = 29/230 (12%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +E+R +   +P    VV   D +L ++ G+  AL+G +G+GKS+++ ++   Y P +G++
Sbjct: 5    LEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61

Query: 1070 MIDGKDIRRLNLKS----LRLKIGLVQQEPALF-AASIFDNIAYGKEGAT------EAEV 1118
             +DGK++R   +KS    +RL IG+V Q   L    ++ +NI  G E +           
Sbjct: 62   RVDGKEVR---IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQAR 118

Query: 1119 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
                  +  +G     P+A    V +    LS G++QR+ I +A+ +   +L+LDE T+ 
Sbjct: 119  ARIKELSERYGL-PVDPDAK---VAD----LSVGEQQRVEILKALYRGARLLILDEPTAV 170

Query: 1179 L-DAESECVLQEALERLMR-GRTTVLVAHRLSTIRGV-DCIGVVQDGRIV 1225
            L   E++ +  E L RL   G+T + + H+L  +  + D + V++ G++V
Sbjct: 171  LTPQEADELF-EILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219

Length = 501

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 97.8 bits (243), Expect = 2e-22
 Identities = 69/236 (29%), Positives = 117/236 (49%), Gaps = 13/236 (5%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-- 422
           I+ + V F Y       + ++ ++ FP  +  A++G SG GKST++  + R  D  +G  
Sbjct: 5   IKIRGVNFFYHKHQ---VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61

Query: 423 ---HVLLDNVDIKT--LQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAA 477
               VLLDN +I +  L +  LR ++G+V Q+P  F  +I +N+ +G P       ++  
Sbjct: 62  LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFG-PRMLGTTAQSRL 120

Query: 478 SAANAHSF-ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
                 S     L +     + + G+ LSGGQ+QR+ IAR +   P+++L+DE  SALD 
Sbjct: 121 DEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDP 180

Query: 537 GSESIVQEALDRLMVGRTTVVVAHRL-STIRNVDTVAVIQQGQVVETGTHEELIAK 591
            S   ++E +  L    T  +V H +    R  D    +  G +VE G   E+ ++
Sbjct: 181 VSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236

Length = 251

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 99.1 bits (247), Expect = 2e-22
 Identities = 67/211 (31%), Positives = 103/211 (48%), Gaps = 21/211 (9%)

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLD--NVDIKTLQLR 437
           D S+  P  +  A++G SG GKST +  I R  D        G +     NV    +   
Sbjct: 57  DVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116

Query: 438 WLRDQIGLVNQEPALFATTILENILYG-----KPEATMAEVEAAASAANAHSFITLLPNG 492
            LR +IG+V Q+P  F  +I +N+ YG             VE +   A        L + 
Sbjct: 117 ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRA-------ALWDE 169

Query: 493 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG 552
              Q+   G+ LSGGQ+QR+ IARA+  +P+++L+DE  SALD  + S +++ ++ L   
Sbjct: 170 VKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE 229

Query: 553 RTTVVVAHRL-STIRNVDTVAV-IQQGQVVE 581
            T V+V H +    R  D  AV +  G++VE
Sbjct: 230 YTVVIVTHNMQQAARISDKTAVFLTGGELVE 260

Length = 285

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 98.5 bits (245), Expect = 2e-22
 Identities = 65/190 (34%), Positives = 102/190 (53%), Gaps = 19/190 (10%)

Query: 1030 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA---GKVMIDGKDI--RRLNLK 1082
            D +L+I A +  A +G SG GKS+++    R  D  P A   G+++   ++I   ++N  
Sbjct: 38   DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97

Query: 1083 SLRLKIGLVQQEPALFAASIFDNIAY-----GKEGATEAEVVEAARAANVHGFVSALPNA 1137
             LR ++G+V Q P  F  SI++NIA+     G +G  +  V ++ R A       A+   
Sbjct: 98   KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRA-------AIWEE 150

Query: 1138 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG 1197
             K  + E+G  LSGGQ+QR+ IARA+   P +LL+DE  SALD  S   ++E    L   
Sbjct: 151  VKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ 210

Query: 1198 RTTVLVAHRL 1207
             T ++V H +
Sbjct: 211  YTIIMVTHNM 220

Length = 274

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 98.2 bits (244), Expect = 2e-22
 Identities = 74/253 (29%), Positives = 125/253 (49%), Gaps = 28/253 (11%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----P 1064
            I+++ + F Y +   +   +  ++ I   +  A++G SG GKS+ I  + R  +      
Sbjct: 8    IKVKDLSFYYNTSKAI---EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64

Query: 1065 TAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEA------ 1116
              G V   G++I   R+N+  LR +IG+V Q P  F  SI++N+AYG   + +       
Sbjct: 65   VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124

Query: 1117 EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 1176
            E+VE+A         +AL    K  + +  + LSGGQ+QR+ IARA+   P +LL+DE  
Sbjct: 125  EIVESALKG------AALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPC 178

Query: 1177 SALDAESECVLQEALERLMRGRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGSH 1230
            SALD  +   ++E +  L    T  +V H      R+S           + G++VE G  
Sbjct: 179  SALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVT 238

Query: 1231 SELVSRPDGAYSR 1243
            +++ S P  + +R
Sbjct: 239  TQIFSNPLDSRTR 251

Length = 259

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 97.6 bits (243), Expect = 2e-22
 Identities = 71/244 (29%), Positives = 119/244 (48%), Gaps = 30/244 (12%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           + F +VT  +     + +    +    AG+ VA++G SGSGKST++ ++      + G +
Sbjct: 1   VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI 57

Query: 425 LLDNVDIKTLQ-------------LRWLRDQIGLVNQEPALFA-TTILENILYGKPEATM 470
            ++   +  +              LR +R++IG+V Q   LF   T+L+N+     EA +
Sbjct: 58  QVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVT----EAPV 113

Query: 471 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 530
             +  A + A   +   L   G + +      QLSGGQ+QR+AIARA+   PK++L DE 
Sbjct: 114 LVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV 173

Query: 531 TSALDAGSESIVQEALDRLM-----VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGT 584
           TSALD     +V E L+ +         T ++V H +   R   D V    +G++VE G 
Sbjct: 174 TSALDP---ELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230

Query: 585 HEEL 588
            +E+
Sbjct: 231 PDEI 234

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 96.4 bits (241), Expect = 3e-22
 Identities = 56/232 (24%), Positives = 109/232 (46%), Gaps = 21/232 (9%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           ++ +N+T +Y       +  D S+    G+   ++G +G+GK+T + ++     P +G  
Sbjct: 1   LQIRNLTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENI-----LYGKPEATM-AEVEAAA 477
            ++   I+T   +  R  +G   Q  ALF   T+ E++     L G P++ +  EVE   
Sbjct: 60  YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLL 118

Query: 478 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
                             +       LSGG K+++++A A++  P +LLLDE TS LD  
Sbjct: 119 RVLGLTDKAN-------KRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPA 167

Query: 538 SESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
           S   + + +  +  GR+ ++  H +     + D +A++  G++   G+ +EL
Sbjct: 168 SRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 96.6 bits (241), Expect = 3e-22
 Identities = 70/218 (32%), Positives = 107/218 (49%), Gaps = 29/218 (13%)

Query: 1031 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 1090
            F+L +  G+  A++G SG+GKS+++ LI  F  P +G + ++G+D         R  + +
Sbjct: 18   FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTT--PPSRRPVSM 75

Query: 1091 VQQEPALFA-ASIFDNIAYGKE------GATEAEVVEAARAANVHGFVSALPNAYKTPVG 1143
            + QE  LF+  ++  NI  G         A   ++   AR   +   ++ LP        
Sbjct: 76   LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG------- 128

Query: 1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-----MRGR 1198
                QLSGGQ+QR+A+AR +++   ILLLDE  SALD     + QE L  +      R  
Sbjct: 129  ----QLSGGQRQRVALARCLVREQPILLLDEPFSALDP---ALRQEMLTLVSQVCQERQL 181

Query: 1199 TTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVS 1235
            T ++V+H L    R      VV DGRI   G   EL+S
Sbjct: 182  TLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219

Length = 232

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 99.4 bits (248), Expect = 3e-22
 Identities = 70/190 (36%), Positives = 101/190 (53%), Gaps = 22/190 (11%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
            V  D +L I +GQ  AL+G SGSGK++++ +I      T+G +   G D+ RL+ +  + 
Sbjct: 17   VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK- 75

Query: 1087 KIGLVQQEPALFA-ASIFDNIAYG------KEGATEAEVVEAARAANVHGFV--SALPNA 1137
             +G V Q  ALF   ++FDNIA+G      +E    A +   A+   +   V  + L + 
Sbjct: 76   -VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAI--KAKVTQLLEMVQLAHLADR 132

Query: 1138 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR- 1196
            Y         QLSGGQKQR+A+ARA+   P ILLLDE   ALDA+    L+  L +L   
Sbjct: 133  YPA-------QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE 185

Query: 1197 -GRTTVLVAH 1205
               T+V V H
Sbjct: 186  LKFTSVFVTH 195

Length = 353

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score =  101 bits (254), Expect = 4e-22
 Identities = 73/249 (29%), Positives = 114/249 (45%), Gaps = 40/249 (16%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKS----SVIALIERFYDPTA---GKVMIDGKDI 1076
             V   K  +  I AG++ ALVG SGSGKS    S++ L+       A   G ++ DG+D+
Sbjct: 22   TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLP--SPAAAHPSGSILFDGEDL 79

Query: 1077 RRLNLKSLRL----KIGLVQQEP--AL-----FAASIFDNIAY---GKEGATEAEVVEAA 1122
               + + LR     KIG++ QEP  +L         + + +         A  A  +E  
Sbjct: 80   LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELL 139

Query: 1123 RAANV---HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 1179
                +      + A P+           +LSGGQ+QR+ IA A+   P +L+ DE T+AL
Sbjct: 140  ELVGIPEPEKRLDAYPH-----------ELSGGQRQRVMIAMALANEPDLLIADEPTTAL 188

Query: 1180 DAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 1236
            D   +  + + L+ L    G   + + H L  +R   D + V+Q G IVE G+   L + 
Sbjct: 189  DVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAA 248

Query: 1237 PDGAYSRLL 1245
            P   Y+R L
Sbjct: 249  PQHPYTRKL 257

Length = 534

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 97.7 bits (243), Expect = 4e-22
 Identities = 74/236 (31%), Positives = 115/236 (48%), Gaps = 35/236 (14%)

Query: 381 IIFRDFSIF---FPAGKTV----------AVVGGSGSGKSTVVSLIERFYD--PN---AG 422
           ++ ++FSI+   F A K V          A++G SG GKST +  I R  D  P+    G
Sbjct: 40  VVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTG 99

Query: 423 HVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMAE-V 473
            ++ D  DI  K      LR +IG+V Q+P  F  +I +NI YG        +  + E V
Sbjct: 100 ALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIV 159

Query: 474 EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSA 533
           E +   A        L +  S ++ +  + LSGGQ+QR+ +AR +   P+ILLLDE TSA
Sbjct: 160 EKSLRKA-------ALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSA 212

Query: 534 LDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
           LD  + + +++ +  L    T ++V H +     V D      +G +VE     +L
Sbjct: 213 LDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268

Length = 286

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 97.2 bits (242), Expect = 4e-22
 Identities = 74/232 (31%), Positives = 110/232 (47%), Gaps = 22/232 (9%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA- 421
           I  +NVT SY +   V   ++     P GK  A++G SG GKSTV+  + R  D      
Sbjct: 14  ISLQNVTISYGTFEAV---KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70

Query: 422 --GHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYGKP----EATMAE- 472
             G VL D  D+    +    +R +IG+V Q+P  F  +I ENI +G         M E 
Sbjct: 71  LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130

Query: 473 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 532
           VE +   A        + +    ++ E G  LSGGQ+QR+ IAR +   P+++L+DE  S
Sbjct: 131 VERSLRKA-------AVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCS 183

Query: 533 ALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 584
           ALD  S   ++E +  L    T V+V H +     V  +      + VE G+
Sbjct: 184 ALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGS 235

Length = 269

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 97.5 bits (242), Expect = 4e-22
 Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 25/244 (10%)

Query: 361 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
           +N  +E +N+ F Y    DV      S     G+ V+++G +GSGKST   LI+  ++  
Sbjct: 1   MNKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF 60

Query: 421 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKP------EATMAE 472
            G V +D   +    +  LR +IG+V Q P       T+ +++ +G        E  +  
Sbjct: 61  EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR 120

Query: 473 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 532
           V+ A  A N   F T  P            +LSGGQKQR+A+A  +   P+I++LDE+TS
Sbjct: 121 VDEALLAVNMLDFKTREP-----------ARLSGGQKQRVAVAGIIALRPEIIILDESTS 169

Query: 533 ALDAGSES----IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 588
            LD         ++ E  ++  +  T + + H L    + D + V++ G++++     EL
Sbjct: 170 MLDPTGRQEIMRVIHEIKEKYQL--TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSEL 227

Query: 589 IAKA 592
            A +
Sbjct: 228 FATS 231

Length = 277

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 96.3 bits (240), Expect = 5e-22
 Identities = 68/230 (29%), Positives = 117/230 (50%), Gaps = 11/230 (4%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +E+  +  +Y S+  V   +D +     G+   L+G +G+GK++++ +I     P +GKV
Sbjct: 2    LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVH 1128
             IDG D  R     +R KIG++  E  L+A  +  +N+ Y       +     AR A + 
Sbjct: 60   TIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118

Query: 1129 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 1188
              +  L       VGE     S G KQ++AIARA++ +P+IL+LDE TS LD  +     
Sbjct: 119  KRLQ-LLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173

Query: 1189 EALERLMR-GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 1236
            + +++L   GR  +  +H +  +  + D + V+  G +V +GS   L +R
Sbjct: 174  DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223

Length = 245

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 96.7 bits (240), Expect = 5e-22
 Identities = 72/229 (31%), Positives = 112/229 (48%), Gaps = 10/229 (4%)

Query: 369 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF---YDPNA---G 422
           N++  Y    D  I +D +I  P      ++G SGSGKST++ ++ R    YD      G
Sbjct: 12  NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDG 71

Query: 423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG-KPEATMAEVEAAASAA 480
            VL    DI  +    LR ++G+V Q+P  F   +I +NI Y  K      + E      
Sbjct: 72  KVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVE 131

Query: 481 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
                + L    Y  ++     QLSGGQ+QR+ IARA+   PK+LL+DE TS +D  +  
Sbjct: 132 ECLRKVGLWKEVYD-RLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQ 190

Query: 541 IVQEALDRLMVGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEEL 588
            +++ +  L      V+V+H    + R  D VA +  G++VE G+  E+
Sbjct: 191 AIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239

Length = 257

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 97.2 bits (242), Expect = 6e-22
 Identities = 74/245 (30%), Positives = 118/245 (48%), Gaps = 27/245 (11%)

Query: 361 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
            +  +EFK+V+F+YP      +  D S   P G   A++G +GSGKST+  LI     P+
Sbjct: 2   KDNIVEFKHVSFTYPDSKKPAL-NDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPD 60

Query: 421 AGHVLLDNVDIKTLQLR--W-LRDQIGLVNQEP--ALFATTILENILYG-----KPEATM 470
                   VD  TL  +  W +R+++G+V Q P       T+ +++ +G      P   M
Sbjct: 61  DNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEM 120

Query: 471 AE-VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 529
            + V    +      +I   P             LSGGQKQR+AIA  +   PKI++LDE
Sbjct: 121 IKIVRDVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDE 169

Query: 530 ATSALD-AGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHE 586
           +TS LD AG E I++  + +L      T + + H +      D V V+  G+++  G+  
Sbjct: 170 STSMLDPAGKEQILK-LIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPV 228

Query: 587 ELIAK 591
           E+ +K
Sbjct: 229 EIFSK 233

Length = 282

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 96.8 bits (241), Expect = 8e-22
 Identities = 69/268 (25%), Positives = 129/268 (48%), Gaps = 32/268 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           ++ + + ++Y      +  +  +I    G+  A++GG+G+GKST+   +     P++G +
Sbjct: 6   LKVEELNYNYSDGTHAL--KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63

Query: 425 LLDN--VDIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAA 480
           L D   +D     L  LR+ +G+V Q+P   LF+ ++ +++ +G     + E E      
Sbjct: 64  LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123

Query: 481 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
           NA     L   G      +    LS GQK+R+AIA  ++  PK+L+LDE T+ LD    S
Sbjct: 124 NA-----LKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178

Query: 541 IVQEALDRLM--VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAKAGAYAS 597
            + + L  +   +G T ++  H +  +    D V V+++G+V+  G  +E+ A+      
Sbjct: 179 EIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE------ 232

Query: 598 LIRFQEMVRNRDFANPSTRRSRSTRLSH 625
               +EM+R  +         R  R+ H
Sbjct: 233 ----KEMLRKVNL--------RLPRIGH 248

Length = 283

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 95.8 bits (238), Expect = 1e-21
 Identities = 66/207 (31%), Positives = 99/207 (47%), Gaps = 22/207 (10%)

Query: 390 FPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDIKTLQLR--WLRDQ 442
           F   +  A++G SG GKST +  + R  D  P     G+V L   +I         LR Q
Sbjct: 28  FNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQ 87

Query: 443 IGLVNQEPALFATTILENILYG------KPEATMAE-VEAAASAANAHSFITLLPNGYST 495
           +G+V Q+P  F  +I EN++YG      K +A + E VE +   A     +         
Sbjct: 88  VGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KD 140

Query: 496 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTT 555
            + E  + LSGGQ+QR+ IAR +   P ++LLDE TSALD  S + ++  L  L    T 
Sbjct: 141 HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTI 200

Query: 556 VVVAHRLSTIRNV-DTVAVIQQGQVVE 581
           ++V H +     + D  A    G ++E
Sbjct: 201 ILVTHSMHQASRISDKTAFFLTGNLIE 227

Length = 252

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 97.1 bits (242), Expect = 2e-21
 Identities = 75/231 (32%), Positives = 120/231 (51%), Gaps = 20/231 (8%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +  KN+T  + S   VI   + +I    G  V ++G SG GK+TV+ L+     P  G +
Sbjct: 7   VVLKNITKRFGSNT-VIDNLNLTI--KQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63

Query: 425 LLDNVDI--KTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAAN 481
            +D  D+  +++Q R     I +V Q  ALF   ++ EN+ YG     + + E       
Sbjct: 64  FIDGEDVTHRSIQQR----DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKE 119

Query: 482 AHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
           A   + L   G+     +R V Q+SGGQ+QR+A+ARA++  PK+LL DE  S LDA    
Sbjct: 120 ALELVDL--AGF----EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRR 173

Query: 541 IVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
            ++E +  L      T++ V H  S    V DTV V+ +G++++ G+ +EL
Sbjct: 174 SMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224

Length = 351

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 99.5 bits (249), Expect = 2e-21
 Identities = 69/247 (27%), Positives = 123/247 (49%), Gaps = 41/247 (16%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E + +T  +P    V+   D S+    G+  A++G +G+GKST++ ++   Y P++G +
Sbjct: 5   LEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61

Query: 425 LLD--NVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAAN 481
            +D   V IK+ +   +R  IG+V+Q   L  T T+ ENI+ G   +    ++   + A 
Sbjct: 62  RVDGKEVRIKSPR-DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR 120

Query: 482 AHSF-----ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
                    + + P+     V +    LS G++QR+ I +A+ +  ++L+LDE T+ L  
Sbjct: 121 IKELSERYGLPVDPDAK---VAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173

Query: 537 GSESIVQEALDRLMV--------GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG---- 583
                 QEA D L          G+T + + H+L  +  + D V V+++G+VV T     
Sbjct: 174 ------QEA-DELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDPVA 226

Query: 584 --THEEL 588
             T EEL
Sbjct: 227 ETTEEEL 233

Length = 501

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 95.7 bits (238), Expect = 2e-21
 Identities = 72/238 (30%), Positives = 119/238 (50%), Gaps = 18/238 (7%)

Query: 365 IEFKNVTFSY-PSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 422
           I+F+NV + Y P  P +     + S     G  VA+VG +GSGKST++        P++G
Sbjct: 3   IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62

Query: 423 HVLLDNVDIKTLQ-----LRWLRDQIGLVNQ--EPALFATTILENILYGKPEATMAEVEA 475
            + +    I T +     L+ LR ++ LV Q  E  LF  T+L+++ +G      +E EA
Sbjct: 63  TITIAGYHI-TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEA 121

Query: 476 AASAANAHSFITLLPNGYSTQVGERG-VQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
              A        L   G S  +  +   +LSGGQ +R+AIA  M   P+IL LDE  + L
Sbjct: 122 KEKALK-----WLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGL 176

Query: 535 DA-GSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA 590
           D  G + ++Q   D    G T ++V H +  +    D V V++ G++++  + +E+ +
Sbjct: 177 DPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234

Length = 287

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 95.1 bits (236), Expect = 2e-21
 Identities = 71/255 (27%), Positives = 127/255 (49%), Gaps = 30/255 (11%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----P 1064
            I++ ++ F Y ++    + +  ++ I   +  A++G SG GKS+ +  + R  +      
Sbjct: 8    IKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR 64

Query: 1065 TAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAA 1122
              G+V    ++I  RR+NL  LR ++ +V  +P LF  S++DN+AYG       ++V   
Sbjct: 65   VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYG------VKIVGWR 118

Query: 1123 RAANVHGFV-SALPNA-----YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 1176
                +   V SAL +A      K  + +  + LSGGQ+QR+ IARA+   P +LL+DE  
Sbjct: 119  PKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178

Query: 1177 SALDAESECVLQEALE--RLMRGRTTVLVAHRLSTI-RGVDCIGVVQD-----GRIVEQG 1228
              LD  +   ++  ++  RL    T V+V+H L  + R  D     +      G++VE G
Sbjct: 179  FGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFG 238

Query: 1229 SHSELVSRPDGAYSR 1243
               ++ + P  + +R
Sbjct: 239  LTKKIFNSPHDSRTR 253

Length = 261

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 94.0 bits (234), Expect = 2e-21
 Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 28/215 (13%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
               + +L +       L+G +G+GKS+++ +I     PT+G+++ DG    R +L     
Sbjct: 15   AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLH---- 70

Query: 1087 KIGLVQQEPALFA-ASIFDN--IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVG 1143
            KIG + + P L+   +  +N  +     G  ++ + E     +       L N  K    
Sbjct: 71   KIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVD-------LTNTGKKKAK 123

Query: 1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-----GR 1198
                Q S G KQR+ IA A+L +P +L+LDE T+ LD      +QE L  L+R     G 
Sbjct: 124  ----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIG---IQE-LRELIRSFPEQGI 175

Query: 1199 TTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSE 1232
            T +L +H LS ++ + D IG++ +G +  QG  ++
Sbjct: 176  TVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 94.1 bits (234), Expect = 3e-21
 Identities = 70/247 (28%), Positives = 116/247 (46%), Gaps = 33/247 (13%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA- 421
           +  KN+   Y  +  +    D +I  P  +  A++G SG GKST++    R  D  P   
Sbjct: 7   LSTKNLNLWYGEKHALY---DITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR 63

Query: 422 --GHVLLDNVDIKTLQLR--WLRDQIGLVNQEPALFATTILENILYG------KPEATMA 471
             G +L +  +I         LR +IG+V Q P  F  +I EN+ YG      K + T+ 
Sbjct: 64  ITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLD 123

Query: 472 E-VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 530
             VE +   A        L +    ++ +  + LSGGQ+QR+ IAR +  NP+++L+DE 
Sbjct: 124 TIVEKSLKGA-------ALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEP 176

Query: 531 TSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGT----- 584
            SALD  + + +++ ++ L    T ++V H +     V D    +  G+++E        
Sbjct: 177 CSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236

Query: 585 ---HEEL 588
              HEEL
Sbjct: 237 ENPHEEL 243

Length = 253

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 93.6 bits (233), Expect = 3e-21
 Identities = 64/216 (29%), Positives = 94/216 (43%), Gaps = 32/216 (14%)

Query: 393 GKTVAVVGGSGSGKSTVVSLIERFYDPNA----GHVLLDNVDIKTLQLRWLRDQIGLVNQ 448
           G+ +A+VG SGSGKS     I     P      G +LLD   +  L +R     I  + Q
Sbjct: 12  GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR--HIATIMQ 69

Query: 449 EP-----ALF--ATTILENI-----LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQ 496
            P      LF      +E +     L  +  A + E   A    +    +   P      
Sbjct: 70  NPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYP------ 123

Query: 497 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTT- 555
                 QLSGG  QR+ IA A+L  P  L+ DE T+ LD  +++ V + L  L     T 
Sbjct: 124 -----FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTG 178

Query: 556 -VVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELI 589
            +++ H L  + R  D VAV+  G++VE GT +E+ 
Sbjct: 179 ILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 91.3 bits (228), Expect = 3e-21
 Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 67/224 (29%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E + +T  +     V      S+    G+  A++G +G+GKST++ ++   Y P++G +
Sbjct: 1   LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS 484
           L                    V+ +   FA+                        A    
Sbjct: 58  L--------------------VDGKEVSFAS---------------------PRDARRA- 75

Query: 485 FITLLPNGYSTQVGERGV----QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
                           G+    QLS G++Q + IARA+ +N ++L+LDE T+AL      
Sbjct: 76  ----------------GIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVE 119

Query: 541 IVQEALDRLMV-GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVET 582
            + + + RL   G   + ++HRL  +  + D V V++ G+VV T
Sbjct: 120 RLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 94.5 bits (235), Expect = 3e-21
 Identities = 75/234 (32%), Positives = 111/234 (47%), Gaps = 33/234 (14%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL------- 1079
            V    N  + AG+  AL+G SGSGKS+++ ++        G++ ++G+ +  +       
Sbjct: 15   VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74

Query: 1080 ------NLKSLRLKIGLVQQEPALFA-ASIFDNIAYGK---EGATEAEVVEAARAANVHG 1129
                  +L+ +R KIG+V Q   LF   ++ DN+        G   AE     RA  +  
Sbjct: 75   VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEA--EKRAMELLD 132

Query: 1130 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 1189
             V     A   P      QLSGGQ+QR+AIARA+   P ++L DE TSALD E   ++ E
Sbjct: 133  MVGLADKADHMPA-----QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE---LVGE 184

Query: 1190 ALERLMR-----GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
             L  + R       T +LV H +   R   D +     GRIVEQG   E+  +P
Sbjct: 185  VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQP 238

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 96.7 bits (241), Expect = 3e-21
 Identities = 79/235 (33%), Positives = 121/235 (51%), Gaps = 22/235 (9%)

Query: 364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           +IE  N+  S+       +  D S+  P+G+ VA++G SGSGK+T++ +I       +GH
Sbjct: 2   SIEIANIKKSFGRTQ---VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGH 58

Query: 424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANA 482
           +     D+  L  R    ++G V Q  ALF   T+ +NI +G    T+       +AA  
Sbjct: 59  IRFHGTDVSRLHAR--DRKVGFVFQHYALFRHMTVFDNIAFG---LTVLPRRERPNAAAI 113

Query: 483 HSFIT-LLPNGYSTQVGER-GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
            + +T LL       + +R   QLSGGQKQR+A+ARA+   P+ILLLDE   ALDA    
Sbjct: 114 KAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ--- 170

Query: 541 IVQEALDRLM------VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
            V++ L R +      +  T+V V H       V D V V+ QG + + GT +++
Sbjct: 171 -VRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224

Length = 353

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 94.4 bits (235), Expect = 3e-21
 Identities = 61/206 (29%), Positives = 104/206 (50%), Gaps = 30/206 (14%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +++ H+   Y  +P     +D NL + +G+   ++G SG GK++++ LI  F     G +
Sbjct: 2    LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAEVVEAARAA- 1125
             +DGK +     +    + G+V Q   L    ++ DN+A+G +  G  + + +E A    
Sbjct: 59   TLDGKPV-----EGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQML 113

Query: 1126 ---NVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
                + G              +R + QLSGGQ+QR+ IARA+  NP +LLLDE   ALDA
Sbjct: 114  KKVGLEGA------------EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161

Query: 1182 ESECVLQEALERLMR--GRTTVLVAH 1205
             +   +Q  L +L +  G+  +L+ H
Sbjct: 162  FTREQMQTLLLKLWQETGKQVLLITH 187

Length = 255

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 94.4 bits (235), Expect = 3e-21
 Identities = 65/202 (32%), Positives = 103/202 (50%), Gaps = 20/202 (9%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
            V    +L I AGQ  A+VG SG GKS+++ L+     P+AG+++          L   R 
Sbjct: 27   VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG-----TAPLAEARE 81

Query: 1087 KIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGER 1145
               L+ Q+  L     + DN+  G +G      ++A  A  +    +  P A        
Sbjct: 82   DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAA-------- 133

Query: 1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLV 1203
               LSGGQKQR+A+ARA++  P +LLLDE   ALDA +   +Q+ +E L +  G T +LV
Sbjct: 134  ---LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLV 190

Query: 1204 AHRLS-TIRGVDCIGVVQDGRI 1224
             H +S  +   D + ++++G+I
Sbjct: 191  THDVSEAVAMADRVLLIEEGKI 212

Length = 257

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 93.9 bits (233), Expect = 5e-21
 Identities = 70/240 (29%), Positives = 112/240 (46%), Gaps = 26/240 (10%)

Query: 364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA 421
            I+ +N+   Y  +      ++ S+  P     A++G SG GKST +  + R  D   N 
Sbjct: 12  QIKVENLNLWYGEKQ---ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68

Query: 422 ---GHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG-------KPEAT 469
              G V ++  DI    + +  LR  +G+V Q+P  F  +I +N+ YG       K +  
Sbjct: 69  RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLD 128

Query: 470 MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 529
                A  SAA        L +  S ++    + LSGGQ+QR+ IAR +   PKI+L DE
Sbjct: 129 GVVENALRSAA--------LWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180

Query: 530 ATSALDAGSESIVQEALDRLMVGRTTVVVAHRL-STIRNVDTVAVIQQGQVVETGTHEEL 588
            TSALD  S + +++ +  L    T V+V H +    R  D       G+++E G   ++
Sbjct: 181 PTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240

Length = 258

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 92.9 bits (231), Expect = 5e-21
 Identities = 65/214 (30%), Positives = 106/214 (49%), Gaps = 13/214 (6%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           ++ +NV +         I  + S    AG+   + G SG GKST++ ++     P +G +
Sbjct: 8   LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP-EATMAEVEAAASAANAH 483
           L +  DI TL+    R Q+    Q P LF  T+ +N+++  P +    + + A    +  
Sbjct: 65  LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIF--PWQIRNQQPDPAIFLDDLE 122

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
            F   LP+   T + +   +LSGG+KQRI++ R +   PK+LLLDE TSALD  ++  V 
Sbjct: 123 RF--ALPD---TILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177

Query: 544 EALDRLMVGRTTVV--VAHRLSTIRNVDTVAVIQ 575
           E + R +  +   V  V H    I + D V  +Q
Sbjct: 178 EIIHRYVREQNIAVLWVTHDKDEINHADKVITLQ 211

Length = 225

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 92.3 bits (230), Expect = 5e-21
 Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 27/227 (11%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            ++   +   Y  +    V  D +L ++ G+    +G +G+GK++ + +I     P +G++
Sbjct: 1    LKTNDLTKTYGKKR---VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNI-----AYGKEGATEAEVVEAAR 1123
              DGK            +IG + + P  +   +  +N+       G       EV++   
Sbjct: 58   TFDGKSY--QKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLD--- 112

Query: 1124 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
                   V  L ++ K  V       S G KQR+ IA A+L NP +L+LDE T+ LD + 
Sbjct: 113  -------VVGLKDSAKKKVK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161

Query: 1184 ECVLQEALERLMRGRTTVLVA-HRLSTIRGV-DCIGVVQDGRIVEQG 1228
               L+E +  L     TVL++ H LS I+ V D IG++  G+++E+G
Sbjct: 162  IKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 95.0 bits (237), Expect = 6e-21
 Identities = 72/244 (29%), Positives = 109/244 (44%), Gaps = 58/244 (23%)

Query: 1034 RIRAGQSQALVGASGSGKSSV---IALIERFYDPTAGKVMIDGKDIR---RLNLKSLRLK 1087
             +  G++ A+VG SG GKS++   + +IE    PT G++   G+D+        K LR K
Sbjct: 37   TLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDLLKADPEAQKLLRQK 93

Query: 1088 IGLVQQEPALFAASIFDNIAYG------KEGATEAEVVE-------AARAANVHGFVSAL 1134
            I +V Q P            YG      K G    E +        A R           
Sbjct: 94   IQIVFQNP------------YGSLNPRKKVGQILEEPLLINTSLSAAERREKAL------ 135

Query: 1135 PNAYKTPVGERGVQ-------LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
              A    VG R           SGGQ+QRIAIARA++ +P +++ DE  SALD     V 
Sbjct: 136  --AMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS---VQ 190

Query: 1188 QEALERLMR-----GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
             + L  +M      G + V ++H LS +  + D + V+  GR VE+G+  ++ + P   Y
Sbjct: 191  AQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPY 250

Query: 1242 SRLL 1245
            ++ L
Sbjct: 251  TQAL 254

Length = 327

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 94.5 bits (235), Expect = 6e-21
 Identities = 74/256 (28%), Positives = 123/256 (48%), Gaps = 27/256 (10%)

Query: 1010 IELRHVDFAY-PSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            I+  +VD+ Y P  P +     + +  +  G   ALVG +GSGKS+++        P++G
Sbjct: 3    IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62

Query: 1068 KVMIDGKDIR----RLNLKSLRLKIGLVQQ--EPALFAASIFDNIAYGKE--GATEAEVV 1119
             + I G  I       NLK LR K+ LV Q  E  LF  ++  ++ +G +  G +E E  
Sbjct: 63   TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122

Query: 1120 EAA-RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
            E A +     G    L +  K+P      +LSGGQ +R+AIA  +   P IL LDE  + 
Sbjct: 123  EKALKWLKKVGLSEDLIS--KSPF-----ELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175

Query: 1179 LDAESECVLQEALERLMR-GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSR 1236
            LD E    + +  +   + G T +LV H +  +    D + V++ G++++  S  E+ S 
Sbjct: 176  LDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235

Query: 1237 PDGAYSRLLQLQHHHI 1252
             +        L+ H++
Sbjct: 236  KE-------WLKKHYL 244

Length = 287

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 95.5 bits (238), Expect = 6e-21
 Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 19/217 (8%)

Query: 1030 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI----RRLNLKSLR 1085
            D N  + A    AL G SGSGK+S+I +I     P  G++ ++G+ +    + + L   +
Sbjct: 16   DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75

Query: 1086 LKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGE 1144
             +IG V Q+  LF   ++  N+ YG   +  A+  +      +   +   P         
Sbjct: 76   RRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG-------- 127

Query: 1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT--VL 1202
                LSGG+KQR+AI RA+L  P +LL+DE  ++LD   +  +   LERL        + 
Sbjct: 128  ---TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILY 184

Query: 1203 VAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
            V+H L  + R  D + V+++G++   G   E+   PD
Sbjct: 185  VSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSPD 221

Length = 352

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 93.2 bits (232), Expect = 7e-21
 Identities = 73/250 (29%), Positives = 113/250 (45%), Gaps = 38/250 (15%)

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDI--KTLQLR 437
           D ++        A +G SG GKSTV+  + R ++  P A   G VLLD  D+    +   
Sbjct: 22  DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81

Query: 438 WLRDQIGLVNQEPALFAT-TILENILYG--------KPEATMAEVEAAASAANAHSFITL 488
            +R  IG+V Q P  F T +I +N++ G        K +     VE +   AN       
Sbjct: 82  AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLD-ELVEKSLRGAN------- 133

Query: 489 LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDR 548
           L N    ++ + G  LSGGQ+QR+ IARA+   P +LL+DE  SALD  S   +++ ++ 
Sbjct: 134 LWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE 193

Query: 549 LMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNR 608
           L    T V+V H +            QQ   V   T    +   G    L+   +    +
Sbjct: 194 LKQDYTIVIVTHNM------------QQAARVSDQTAFFNLEATGKPGRLVEIDDT--EK 239

Query: 609 DFANPSTRRS 618
            F+NP+ + +
Sbjct: 240 IFSNPTQKAT 249

Length = 258

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 93.2 bits (232), Expect = 8e-21
 Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 33/221 (14%)

Query: 368 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 427
             V+  Y  R    +     +  PAG+ VAVVG SG GKST++ L+     P+AG +L  
Sbjct: 16  NAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG 72

Query: 428 NVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG-----KPEATMAEVEAAASAAN 481
                   L   R+   L+ Q+  L     +++N+  G     +  A  A + A      
Sbjct: 73  TA-----PLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQA-LAAV----- 121

Query: 482 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 541
                     G + +  E    LSGGQKQR+A+ARA++  P +LLLDE   ALDA +   
Sbjct: 122 ----------GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIE 171

Query: 542 VQEALDRLMV--GRTTVVVAHRLS-TIRNVDTVAVIQQGQV 579
           +Q+ ++ L    G T ++V H +S  +   D V +I++G++
Sbjct: 172 MQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212

Length = 257

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 92.2 bits (229), Expect = 8e-21
 Identities = 74/202 (36%), Positives = 104/202 (51%), Gaps = 17/202 (8%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            I   HV  AY      +    F++R   G+   L G SG+GKS+++ LI     P+AGK+
Sbjct: 2    IRFEHVSKAYLGGRQALQGVTFHMR--PGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59

Query: 1070 MIDGKDIRRLNLKS---LRLKIGLV-QQEPALFAASIFDNIAYGK--EGATEAEVVEAAR 1123
               G DI RL  +    LR +IG++ Q    L   +++DN+A      GA+  ++     
Sbjct: 60   WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVS 119

Query: 1124 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD-AE 1182
            AA     V  L  A   P+     QLSGG++QR+ IARAV+  PA+LL DE T  LD A 
Sbjct: 120  AA--LDKVGLLDKAKNFPI-----QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDAL 172

Query: 1183 SECVLQEALERLMRGRTTVLVA 1204
            SE +L+   E   R   TVL+A
Sbjct: 173  SEGILR-LFEEFNRVGVTVLMA 193

Length = 222

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 94.7 bits (235), Expect = 1e-20
 Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 17/233 (7%)

Query: 363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA- 421
           G I   ++  +Y +     +  D S+   AG+ +A++G SG GK+T++  I  F      
Sbjct: 4   GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60

Query: 422 -GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASA 479
            G + + + D+        +  + L+ Q  ALF    + +N+ +G     M + + A   
Sbjct: 61  TGRIAIADRDLTHAPPH--KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118

Query: 480 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
           A+A   +     G          QLSGG +QRIAIARA+   P +LLLDE  SALDA   
Sbjct: 119 ADALKLV-----GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIR 173

Query: 540 SIVQEALDRL---MVGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
           + ++E +  L   +   T + V H +   +   D   +++ G++   G  + L
Sbjct: 174 ANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 92.4 bits (229), Expect = 1e-20
 Identities = 66/208 (31%), Positives = 107/208 (51%), Gaps = 9/208 (4%)

Query: 390 FPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDIKTLQLR--WLRDQ 442
              G   A++G SG GK+T +  I R +D  P A   G +LLD  DI   ++    +R +
Sbjct: 27  VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRR 86

Query: 443 IGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERG 501
           +G+V Q+P  F T ++ +N++ G   A + + +     A        L +    ++    
Sbjct: 87  VGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPA 146

Query: 502 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHR 561
             LSGGQ+QR+ IARA+   P+ILL+DE TSALD  S + +++ +  L    T ++V H 
Sbjct: 147 TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHN 206

Query: 562 L-STIRNVDTVAVIQQGQVVETGTHEEL 588
           +    R  DT +    G +VE G  ++L
Sbjct: 207 MHQAARVSDTTSFFLVGDLVEHGPTDQL 234

Length = 252

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 92.2 bits (230), Expect = 1e-20
 Identities = 69/221 (31%), Positives = 105/221 (47%), Gaps = 30/221 (13%)

Query: 382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-R 440
           I R  S+  P G+   V+G +G GK+T++  +       +G + LD  DI  L      R
Sbjct: 15  ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74

Query: 441 DQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFI-----TLLPNGYS 494
             I  V Q   +F   T+ EN+L G            A+       I      L P    
Sbjct: 75  AGIAYVPQGREIFPRLTVEENLLTG-----------LAALPRRSRKIPDEIYELFP--VL 121

Query: 495 TQV-GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE---ALDRL- 549
            ++ G RG  LSGGQ+Q++AIARA++  PK+LLLDE T  +     SI+++    + RL 
Sbjct: 122 KEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQP---SIIKDIGRVIRRLR 178

Query: 550 -MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
              G   ++V   L   R + D   V+++G+VV +G  +EL
Sbjct: 179 AEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 93.1 bits (231), Expect = 1e-20
 Identities = 69/273 (25%), Positives = 123/273 (45%), Gaps = 17/273 (6%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           I  +NV++SYP     +   + ++    G+ + ++G +GSGKST+   +     P  G V
Sbjct: 2   IRLENVSYSYPDGTPAL--ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59

Query: 425 LLDNVDIKTL-QLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAAN 481
           L+  +D     +L+ +R  +G+V Q P       T+ E++ +G     +  +E       
Sbjct: 60  LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119

Query: 482 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 541
           A + I L    + +        LSGGQ Q +A+A  +   P+ L+ DE TS LD  S   
Sbjct: 120 ALAEIGLEKYRHRSPK-----TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174

Query: 542 VQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAG------A 594
           V E + +L   G+T V + H L  + + D + V+ +G++V  G  E +++          
Sbjct: 175 VLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLT 234

Query: 595 YASLIRFQEMVRNRDFANPSTRRSRSTRLSHSL 627
             SLI   E ++      P    S  +  +  +
Sbjct: 235 PPSLIELAENLKMHGVVIPWENTSSPSSFAEEI 267

Length = 274

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 98.3 bits (245), Expect = 2e-20
 Identities = 73/257 (28%), Positives = 125/257 (48%), Gaps = 6/257 (2%)

Query: 993  IDPDDP-DAEPVETIRGEIELRHVDFAYPSRPDV-VVFKDFNLRIRAGQSQALVGASGSG 1050
            I+P  P  A P     G +    V   Y  R  + +V +  + RI   +   +VG +GSG
Sbjct: 1291 IEPASPTSAAPHPVQAGSLVFEGVQMRY--REGLPLVLRGVSFRIAPREKVGIVGRTGSG 1348

Query: 1051 KSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK 1110
            KS+++    R  +   G++ ++G++I    L+ LR +  ++ Q+P LF  ++  N+    
Sbjct: 1349 KSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL 1408

Query: 1111 EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK-NPAI 1169
            E A+ AEV  A     +   V++      + V E G   S GQ+Q + +ARA+LK     
Sbjct: 1409 E-ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGF 1467

Query: 1170 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 1229
            +L+DEAT+ +D   +  +Q  +       T + +AHRL T+   D I V+  G + E GS
Sbjct: 1468 ILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGS 1527

Query: 1230 HSELVSRPDGAYSRLLQ 1246
              ELV      +  +++
Sbjct: 1528 PRELVMNRQSIFHSMVE 1544

Length = 1560

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 92.4 bits (229), Expect = 2e-20
 Identities = 73/243 (30%), Positives = 120/243 (49%), Gaps = 27/243 (11%)

Query: 366 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PN--- 420
           E   + F Y         ++ ++     +  A++G SG GKST +    R +D  P    
Sbjct: 18  EVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHY 74

Query: 421 AGHVLL--DNVDIKTLQLR--WLRDQIGLVNQEPALFATTILENILYG------KPEATM 470
            G ++L  DNV+I + ++    +R +I +V Q+P  F  +I EN+ YG      K  + +
Sbjct: 75  EGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSIL 134

Query: 471 AE-VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 529
            E VE A   A        L +    ++G+    LSGGQ+QR+ IARA+  +P+ILL DE
Sbjct: 135 EERVENALRNA-------ALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDE 187

Query: 530 ATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
            TSALD  + + ++E +  L    T ++V H +     V D  A +  G+++E G  + +
Sbjct: 188 PTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247

Query: 589 IAK 591
             K
Sbjct: 248 FIK 250

Length = 265

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 91.8 bits (229), Expect = 2e-20
 Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 34/222 (15%)

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLRDQI 443
              +    G+ VA++G +G+GK+T++  I     P +G ++ D  DI  L      R  I
Sbjct: 23  SLEV--ERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80

Query: 444 GLVNQEPALFAT-TILENILYG--------KPEATMAEVEAAASAANAHSFITLLPNGYS 494
             V +   +F   T+ EN+L G          E  + EV              L P    
Sbjct: 81  AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEV------------YELFPR-LK 127

Query: 495 TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALD-----RL 549
            +  +R   LSGG++Q +AIARA++  PK+LLLDE +  L   +  IV+E  +     R 
Sbjct: 128 ERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKELRK 184

Query: 550 MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 590
             G T ++V         + D   V++ G++V +GT  EL+A
Sbjct: 185 EGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226

Length = 237

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 92.9 bits (230), Expect = 2e-20
 Identities = 65/206 (31%), Positives = 103/206 (50%), Gaps = 7/206 (3%)

Query: 1042 ALVGASGSGKSSVIALIERFYDPTAG-----KVMIDGKDIRRL-NLKSLRLKIGLVQQEP 1095
            +L+G +GSGK++ +  + R  D  +G      V++ G+ I    ++   R ++G++ Q P
Sbjct: 51   SLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRP 110

Query: 1096 ALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 1155
              F  SI DN+  G          E    A        L +A K  + +   +LSGGQ+Q
Sbjct: 111  NPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQ 170

Query: 1156 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLS-TIRGVD 1214
             + +AR +  NP +LLLDE TSALD  +   ++E +  L    T ++V H L+   R  D
Sbjct: 171  LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISD 230

Query: 1215 CIGVVQDGRIVEQGSHSELVSRPDGA 1240
               +  DGR+VE+G   +L S P  A
Sbjct: 231  RAALFFDGRLVEEGPTEQLFSSPKHA 256

Length = 276

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 96.6 bits (241), Expect = 2e-20
 Identities = 67/286 (23%), Positives = 120/286 (41%), Gaps = 53/286 (18%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           I  +N++ +Y  RP   +  + S+    G+ + +VG +G+GKST++ ++    +P++G V
Sbjct: 4   ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAH 483
                            ++G ++QEP L    T+L+ ++ G  E      E   + A   
Sbjct: 61  TRPKGL-----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109

Query: 484 SFITLLPNGYSTQVGERGV------------------------QLSGGQKQRIAIARAML 519
                L       + E                            LSGG ++R+A+ARA+L
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALL 169

Query: 520 KNPKILLLDEATSALDAGSESIVQEALDRLMVGR--TTVVVAHRLSTIRNVDTVAVIQQG 577
           + P +LLLDE T+ LD   ESI  E L+  +     T +VV+H    + NV T       
Sbjct: 170 EEPDLLLLDEPTNHLDL--ESI--EWLEDYLKRYPGTVIVVSHDRYFLDNVAT------- 218

Query: 578 QVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRL 623
            ++E     +L    G Y+S +  +     ++ A    ++    + 
Sbjct: 219 HILEL-DRGKLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKE 263

Length = 530

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 97.1 bits (242), Expect = 2e-20
 Identities = 78/259 (30%), Positives = 125/259 (48%), Gaps = 27/259 (10%)

Query: 365 IEFKNVTFSYPS-RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           +E K++  SYPS    V + +  S+   AG+ VA+VG SGSGKST+++++     P +G 
Sbjct: 5   LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64

Query: 424 VLLDNVDIKTL------QLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAA 476
             +   D+ TL      QLR  R+  G + Q   L +  T  +N+   +  A  A +E  
Sbjct: 65  YRVAGQDVATLDADALAQLR--REHFGFIFQRYHLLSHLTAAQNV---EVPAVYAGLERK 119

Query: 477 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
                A   +  L  G   +V  +  QLSGGQ+QR++IARA++   +++L DE T ALD+
Sbjct: 120 QRLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDS 177

Query: 537 GSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVV----------ETGTH 585
            S   V   L +L   G T ++V H        + V  I+ G++V            G  
Sbjct: 178 HSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKVNVAGGT 237

Query: 586 EELIAKAGAYASLI-RFQE 603
           E ++  A  +   +  F+E
Sbjct: 238 EPVVNTASGWRQFVSGFRE 256

Length = 648

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 92.5 bits (230), Expect = 2e-20
 Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 25/238 (10%)

Query: 365 IEFKNVTFSYPSRPD---VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 421
           I+ KNV++ Y S  +    +   D ++    G+ + ++G +GSGKST+   +     P+ 
Sbjct: 5   IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64

Query: 422 GHVLLDNVDIKTLQLRW-LRDQIGLVNQEP--ALFATTILENILYG------KPEATMAE 472
           G V +D +D    +  W +R++ G+V Q P   + AT + E++ +G       PE     
Sbjct: 65  GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124

Query: 473 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 532
           V+ +      + +    P+            LSGGQKQR+AIA  +   P+ ++ DE T+
Sbjct: 125 VDESLKKVGMYEYRRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEPTA 173

Query: 533 ALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 588
            LD      V   +  L    G T +++ H +      D + V+  G+VV  GT +E+
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231

Length = 280

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 34/217 (15%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKS 1083
            V  D NL I  G+   L G SGSGK++++ LI        G + + G+++   +   L  
Sbjct: 20   VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79

Query: 1084 LRLKIGLVQQEPALF-----------AASIFDNIAYGKEGATEAEVVEAARAANVHGFVS 1132
            LR  IG + Q   L            A  +  N++Y +       ++EA    +   +  
Sbjct: 80   LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY-- 137

Query: 1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 1192
              P+            LSGGQKQR+AIARA++  P ++L DE T+ALD++S   + E ++
Sbjct: 138  -YPH-----------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQ 185

Query: 1193 RLMR--GRTTVLVAH--RLSTIRGVDCIGVVQDGRIV 1225
            +L R  G T ++V H  R+  +   D I  ++DG+++
Sbjct: 186  KLAREQGCTILIVTHDNRILDV--ADRIVHMEDGKLL 220

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 91.5 bits (227), Expect = 3e-20
 Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 34/222 (15%)

Query: 383 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLI--------------ERFYDPNAGHVLLDN 428
            ++ ++  P  +  A++G SG GKST +  +              E  Y  N  ++L   
Sbjct: 28  LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNY--NGSNILKGK 85

Query: 429 VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMAEVEAAASAANA 482
           VD+  L     R  IG+V Q+   F  +I +N+ YG      K +  + E+   +    A
Sbjct: 86  VDLVEL-----RKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVA 140

Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
                 L +    ++  + + LSGGQ+QR+ IARA+  NP +LL+DE TSALD  S   +
Sbjct: 141 ------LWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKI 194

Query: 543 QEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 583
           +E + +L    T V+V H +     V D  A    G++VE  
Sbjct: 195 EELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECN 236

Length = 259

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 91.6 bits (227), Expect = 3e-20
 Identities = 73/245 (29%), Positives = 119/245 (48%), Gaps = 37/245 (15%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--------- 1077
            V K  +L+  AG   +++G+SGSGKS+ +  I     P+ G ++++G+ I          
Sbjct: 20   VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79

Query: 1078 ----RLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE---GATEAEVVE-AARAANVH 1128
                +  L+ LR ++ +V Q   L++  ++ +N+        G ++ E  E A +     
Sbjct: 80   KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV 139

Query: 1129 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 1188
            G        Y        V LSGGQ+QR++IARA+   P +LL DE TSALD E   ++ 
Sbjct: 140  GIDERAQGKYP-------VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE---LVG 189

Query: 1189 EALERLMR-----GRTTVLVAHRLSTIRGVDC-IGVVQDGRIVEQGSHSELVSRPDGAYS 1242
            E L R+M+     G+T V+V H +   R V   +  +  G+I E+G+  +L   P     
Sbjct: 190  EVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSP-- 246

Query: 1243 RLLQL 1247
            RL Q 
Sbjct: 247  RLQQF 251

Length = 257

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 91.6 bits (227), Expect = 3e-20
 Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 30/244 (12%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           I+ K+++F Y +   +      S+     K  A++G SG GKST +  + R  +   G V
Sbjct: 8   IKVKDLSFYYNTSKAI---EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE-GPV 63

Query: 425 LLD--------NVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATM 470
            ++        N+    + +  LR QIG+V Q P  F  +I EN+ YG       P+A +
Sbjct: 64  KVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADL 123

Query: 471 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 530
            E+  +A    A      L      ++ +  + LSGGQ+QR+ IARA+   PK+LL+DE 
Sbjct: 124 DEIVESALKGAA------LWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEP 177

Query: 531 TSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQ-----GQVVETGT 584
            SALD  +   V+E +  L    T  +V H +     V D  A         GQ+VE G 
Sbjct: 178 CSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237

Query: 585 HEEL 588
             ++
Sbjct: 238 TTQI 241

Length = 259

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 90.6 bits (226), Expect = 3e-20
 Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 22/223 (9%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL-KSLR 1085
              +  +L +  G+  AL+G +G+GK++++  I     P +G+++ DG+DI  L   +  R
Sbjct: 18   ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77

Query: 1086 LKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAY------ 1138
            L I  V +   +F   ++ +N+  G           A    +       L   Y      
Sbjct: 78   LGIAYVPEGRRIFPRLTVEENLLLG-----------AYARRDKEAQERDLEEVYELFPRL 126

Query: 1139 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-- 1196
            K    +R   LSGG++Q +AIARA++  P +LLLDE +  L  +    + EA++ L +  
Sbjct: 127  KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEG 186

Query: 1197 GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 1238
            G T +LV         + D   V+++GRIV  G+ +EL++ PD
Sbjct: 187  GMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229

Length = 237

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 92.1 bits (228), Expect = 3e-20
 Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 10/229 (4%)

Query: 369 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH----- 423
           N+T  +  +    +    S+ FPA    +++G +GSGK+T +  + R  D  +G+     
Sbjct: 26  NLTLGFAGK---TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGD 82

Query: 424 VLLDNVDIKTLQ-LRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANA 482
           VLL    I   + +   R ++G++ Q P  F  +I++N+L G     +   +     A A
Sbjct: 83  VLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQA 142

Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
                 L +    ++ +   +LSGGQ+Q + +AR +  NP++LLLDE TSALD  +   +
Sbjct: 143 RLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKI 202

Query: 543 QEALDRLMVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELIA 590
           +E +  L    T ++V H L+   R  D  A+   G++VE G  E+L +
Sbjct: 203 EEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251

Length = 276

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 91.3 bits (227), Expect = 3e-20
 Identities = 73/249 (29%), Positives = 109/249 (43%), Gaps = 40/249 (16%)

Query: 1023 PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP----TAGKVMIDGKDIRR 1078
                +    +L ++ G+  ALVG SGSGKS   A            TAG+V++DGK    
Sbjct: 14   AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK---P 70

Query: 1079 LNLKSLR-LKIGLVQQEPALFAASIFDNI------------AYGKEG--ATEAEVVEAAR 1123
            +   +LR  KI  + Q P     S F+ +            A GK    AT    +EA  
Sbjct: 71   VAPCALRGRKIATIMQNPR----SAFNPLHTMHTHARETCLALGKPADDATLTAALEAVG 126

Query: 1124 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
              N    +   P            ++SGG  QR+ IA A+L     ++ DE T+ LD  +
Sbjct: 127  LENAARVLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVA 175

Query: 1184 ECVLQEALERLMRGRT--TVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGA 1240
            +  + + LE +++ R    +LV H +  + R  D + V+  GRIVEQG    L + P  A
Sbjct: 176  QARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHA 235

Query: 1241 YSRLLQLQH 1249
             +R L   H
Sbjct: 236  VTRSLVSAH 244

Length = 254

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 93.9 bits (234), Expect = 3e-20
 Identities = 79/237 (33%), Positives = 120/237 (50%), Gaps = 28/237 (11%)

Query: 1012 LRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 1071
            LR+V  AY    DVV+ KD NL I  G+    VG SG GKS+++ +I    D T+G + I
Sbjct: 6    LRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI 62

Query: 1072 DGKDIRRLN-LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAE----VVEAAR 1123
              K   R+N +      +G+V Q  AL+   S+ +N+++G +  GA + E    V + A 
Sbjct: 63   GEK---RMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAE 119

Query: 1124 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
               +   +   P A           LSGGQ+QR+AI R ++  P++ LLDE  S LDA  
Sbjct: 120  VLQLAHLLDRKPKA-----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168

Query: 1184 ECVLQEALERLMR--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
               ++  + RL +  GRT + V H ++  +   D I V+  GR+ + G   EL   P
Sbjct: 169  RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225

Length = 369

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 91.4 bits (227), Expect = 3e-20
 Identities = 70/228 (30%), Positives = 111/228 (48%), Gaps = 22/228 (9%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTA---GKVMIDGKDI--RRL 1079
            V K  +L+I      AL+G SG GKS+++    R  +    A   G+V + G++I    +
Sbjct: 19   VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78

Query: 1080 NLKSLRLKIGLVQQEPALFA-ASIFDNIAYG-------KEGATEAEVVEAARAANVHGFV 1131
            +   +R ++G+V Q P  F   +I+DN+A G       K      E VE A         
Sbjct: 79   DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKK------ 132

Query: 1132 SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEAL 1191
            +AL +  K  + +    LSGGQ+QR+ IARA+   P ILL+DE T+ +D      ++E L
Sbjct: 133  AALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELL 192

Query: 1192 ERLMRGRTTVLVAHR-LSTIRGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
              L +  T VLV H      R  D +  +  G+++E G   ++   P+
Sbjct: 193  FELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPE 240

Length = 253

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 93.0 bits (231), Expect = 3e-20
 Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 26/225 (11%)

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI------------- 431
           + S  F   K   ++G SGSGKST+V+          G + + ++ I             
Sbjct: 44  NISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNP 103

Query: 432 ---KTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAANAHSFI 486
              K    + LR ++ +V Q P   LF  TI ++I++G     + + EA   A       
Sbjct: 104 YSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAK-----F 158

Query: 487 TLLPNGYSTQVGERG-VQLSGGQKQRIAIARAMLKNPKILLLDEATSALD-AGSESIVQE 544
            L   G      ER    LSGGQK+R+AIA  +   P+IL+ DE T+ LD  G   ++Q 
Sbjct: 159 YLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL 218

Query: 545 ALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
            LD     +T  V+ H +  +  V D V V+ +G++++TGT  E+
Sbjct: 219 ILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEI 263

Length = 320

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 91.2 bits (227), Expect = 3e-20
 Identities = 62/249 (24%), Positives = 110/249 (44%), Gaps = 28/249 (11%)

Query: 995  PDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV 1054
                  E  E +   IEL++V      +    +  D + ++  G+  A+VG +G+GK+++
Sbjct: 20   KKRHPIEINEPL---IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTL 73

Query: 1055 IALIERFYDPTAGKVMIDGKDIRRLNLKS-LRLKIGLV---QQEPALFAASIFDNIAYGK 1110
            ++L+   + P++G V + G+   +      LR +IGLV     E      ++ D +  G 
Sbjct: 74   LSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGF 133

Query: 1111 -------EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 1163
                   +    AE + AA+          L +    P G     LS G+++R+ IARA+
Sbjct: 134  FASIGIYQEDLTAEDLAAAQWLLELLGAKHLADR---PFG----SLSQGEQRRVLIARAL 186

Query: 1164 LKNPAILLLDEATSALDAESECVLQEALERLM---RGRTTVLVAHRLSTI-RGVDCIGVV 1219
            +K+P +L+LDE    LD  +   L   LE L         + V H    I        ++
Sbjct: 187  VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLL 246

Query: 1220 QDGRIVEQG 1228
            ++G +V QG
Sbjct: 247  KEGEVVAQG 255

Length = 257

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 91.2 bits (227), Expect = 3e-20
 Identities = 74/238 (31%), Positives = 113/238 (47%), Gaps = 27/238 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +  +N+T  Y ++    I  D S+  P GK  A++G +G GKST++    R   P +G V
Sbjct: 3   LRTENLTVGYGTKR---ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV 59

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQE-PALFATTILENILYGK-PEATM-----AEVEAAA 477
            L +  I  L  R L  ++ L+ Q        T+ E + YG+ P  ++     AE  A  
Sbjct: 60  FLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARV 119

Query: 478 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
           + A   + I  L +        R   LSGGQ+QR  +A  + ++  ++LLDE T+ LD  
Sbjct: 120 NQAMEQTRINHLAD-------RRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDIN 172

Query: 538 SESIVQEALDRLM-----VGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 589
                Q  L RLM      G+T V V H L+   R  D + V+  G V+  GT EE++
Sbjct: 173 H----QVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226

Length = 255

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 91.8 bits (228), Expect = 4e-20
 Identities = 73/236 (30%), Positives = 117/236 (49%), Gaps = 26/236 (11%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI----RRLNLKSL 1084
             D N     G+  A+VG +GSGKS++I  I     PT G V +D   I    +   ++ +
Sbjct: 24   HDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPV 83

Query: 1085 RLKIGLVQQ--EPALFAASIFDNIAYG-KEGATEAEVVE--AARAANVHGFVSALPNAYK 1139
            R +IG+V Q  E  LF  ++   I +G K      + V+  A R     GF   + +  +
Sbjct: 84   RKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMS--Q 141

Query: 1140 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RG 1197
            +P      Q+SGGQ ++IAI   +  NP I++LDE T+ LD +S+  +   L+ L     
Sbjct: 142  SPF-----QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDEN 196

Query: 1198 RTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI 1252
            +T +LV+H ++ + R  D + V+++G IV Q S  EL       +    +L   HI
Sbjct: 197  KTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL-------FKDKKKLADWHI 245

Length = 286

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 92.9 bits (230), Expect = 4e-20
 Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 9/226 (3%)

Query: 366 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG--- 422
           E +N  F Y +R   ++  D ++     K  A +G SG GKST +  + +  D   G   
Sbjct: 82  EIRNFNFWYMNRTKHVL-HDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140

Query: 423 ----HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAAS 478
               + L  N   K +    LR +IG+V Q+P  F  +I +N+ YG     + + +    
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200

Query: 479 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 538
                     L +     + + G  LSGGQ+QR+ IARA+   P++LL+DE TSALD  +
Sbjct: 201 IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260

Query: 539 ESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 583
            + ++E +  L    + ++V H ++  + + D      QG + E G
Sbjct: 261 TAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306

Length = 329

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 97.2 bits (242), Expect = 4e-20
 Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 9/231 (3%)

Query: 363  GNIEFKNVTFSYPSRPDV-IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 421
            G++ F+ V   Y  R  + ++ R  S      + V +VG +GSGKST++    R  +   
Sbjct: 1307 GSLVFEGVQMRY--REGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG 1364

Query: 422  GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP--EATMAEVEAAASA 479
            G + ++  +I    LR LR Q  ++ Q+P LF  T+ +N+    P  EA+ AEV AA   
Sbjct: 1365 GEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNV---DPFLEASSAEVWAALEL 1421

Query: 480  ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK-NPKILLLDEATSALDAGS 538
                  +     G  ++V E G   S GQ+Q + +ARA+LK     +L+DEAT+ +D   
Sbjct: 1422 VGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPAL 1481

Query: 539  ESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELI 589
            +  +Q  +       T + +AHRL T+   D + V+  G V E G+  EL+
Sbjct: 1482 DRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELV 1532

Length = 1560

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 92.2 bits (229), Expect = 4e-20
 Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 35/233 (15%)

Query: 384 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA-----GHVLLDNVDI--KTLQL 436
           +  S+  P     A++G SG GKST +  + R  D        G V LD  DI    + L
Sbjct: 62  KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121

Query: 437 RWLRDQIGLVNQEPALFATTILENILYG-------------------KPEATMAEVEAAA 477
             LR ++G+V Q P  F  +I ENI YG                     +A    VE + 
Sbjct: 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSL 181

Query: 478 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
             A        L +  + ++ +  + LSGGQ+QR+ IAR +  +P+++L+DE  SALD  
Sbjct: 182 RQA-------ALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPI 234

Query: 538 SESIVQEALDRLMVGRTTVVVAHRL-STIRNVDTVAV-IQQGQVVETGTHEEL 588
           + S +++ ++ L    T VVV H +    R  D  AV +  G++VE    +++
Sbjct: 235 ATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKI 287

Length = 305

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 91.6 bits (227), Expect = 4e-20
 Identities = 64/232 (27%), Positives = 112/232 (48%), Gaps = 11/232 (4%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            I L +V ++YP        ++ NL I+ G+   ++G +GSGKS++   +     P  GKV
Sbjct: 2    IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59

Query: 1070 MIDGKDIRRLN-LKSLRLKIGLVQQEP--ALFAASIFDNIAYGKEGATEAEVVEAARAAN 1126
            ++ G D    + L+ +R  +G+V Q P       ++ +++A+G E      +    R   
Sbjct: 60   LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119

Query: 1127 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 1186
                +      +++P       LSGGQ Q +A+A  +   P  L+ DE TS LD +S   
Sbjct: 120  ALAEIGLEKYRHRSPK-----TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIA 174

Query: 1187 LQEALERLMR-GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
            + E +++L   G+T V + H L  +   D I V+  G+IV +G    ++S  
Sbjct: 175  VLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDV 226

Length = 274

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 95.1 bits (237), Expect = 5e-20
 Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 20/230 (8%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +  R +   Y     V V K  +  + AG+  AL+G +G+GKS+++ +I     P +G +
Sbjct: 12   LCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68

Query: 1070 MIDGKDIRRLN-LKSLRLKIGLVQQEPALFAA-SIFDNIAYG--KEGATEAEVVEAARAA 1125
             I G    RL   K+ +L I LV QEP LF   S+ +NI +G  K  A+  ++ +   A 
Sbjct: 69   EIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL 128

Query: 1126 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD-AESE 1184
                 + +  +A    V +R         Q + I R ++++  IL+LDE T++L  AE+E
Sbjct: 129  GCQLDLDS--SAGSLEVADR---------QIVEILRGLMRDSRILILDEPTASLTPAETE 177

Query: 1185 CVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSEL 1233
             +     E L +G   V ++H+L  IR + D I V++DG I   G  ++L
Sbjct: 178  RLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227

Length = 510

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 90.8 bits (226), Expect = 6e-20
 Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 11/210 (5%)

Query: 381 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR 440
                 S+    G  V V+G +G+GKST+++ I     P +G +L+D VD+ T +    R
Sbjct: 20  RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDV-TKKSVAKR 78

Query: 441 -DQIGLVNQEPAL---FATTILENILYGKPEATMAEVEAAASAANAHSF---ITLLPNGY 493
            + +  V Q+P        TI EN+   +       + +A +     SF   +  L  G 
Sbjct: 79  ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGL 138

Query: 494 STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR 553
             ++ +R   LSGGQ+Q +++  A L  PKILLLDE T+ALD  +   V E   +++   
Sbjct: 139 ENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEH 198

Query: 554 --TTVVVAHRL-STIRNVDTVAVIQQGQVV 580
             TT++V H +   +   + + ++  G++V
Sbjct: 199 KLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228

Length = 263

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 90.5 bits (224), Expect = 8e-20
 Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 36/248 (14%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA--- 421
           I+  N++F Y ++    I    S+     K  A++G SG GKST +  + R  +  +   
Sbjct: 8   IKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR 64

Query: 422 --GHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYG------KPEATMA 471
             G V   N +I  + + L  LR Q+ +V+ +P LF  ++ +N+ YG      +P+  + 
Sbjct: 65  VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID 124

Query: 472 E-VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 530
           + VE+A   A+       L +    ++ +  + LSGGQ+QR+ IARA+   PK+LL+DE 
Sbjct: 125 DIVESALKDAD-------LWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177

Query: 531 TSALDAGS----ESIVQEALDRLMVGRTTVVVAHRLSTI-RNVDTVAVIQQ-----GQVV 580
              LD  +    ES++Q    RL    T V+V+H L  + R  D  A  +      GQ+V
Sbjct: 178 CFGLDPIASMKVESLIQSL--RLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235

Query: 581 ETGTHEEL 588
           E G  +++
Sbjct: 236 EFGLTKKI 243

Length = 261

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 90.1 bits (224), Expect = 8e-20
 Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 37/245 (15%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
             +   ++   Y ++    +  D +L +  G+  AL+G +G GKS+++    R   P +G 
Sbjct: 2    TLRTENLTVGYGTKR---ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGT 58

Query: 1069 VMIDGKDIRRLNLKSLRLKIGLV-QQEPALFAASIFDNIAYGKE----------GATEAE 1117
            V +  K I  L+ + L  ++ L+ Q        ++ + +AYG+               A 
Sbjct: 59   VFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNAR 118

Query: 1118 VVEAARAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEAT 1176
            V +A     ++               +R +  LSGGQ+QR  +A  + ++  ++LLDE T
Sbjct: 119  VNQAMEQTRINHLA------------DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPT 166

Query: 1177 SALDAESECVLQEALERLMR-----GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSH 1230
            + LD       Q  L RLMR     G+T V V H L+   R  D + V+ +G ++ QG+ 
Sbjct: 167  TYLDINH----QVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTP 222

Query: 1231 SELVS 1235
             E+++
Sbjct: 223  EEVMT 227

Length = 255

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 89.1 bits (222), Expect = 9e-20
 Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 36/228 (15%)

Query: 1012 LRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 1071
               +        +    KD +  +  G+   L+G +G+GKS+++ L+   Y P +G V +
Sbjct: 22   KLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV 81

Query: 1072 DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE---------GATEAEVVEAA 1122
             G+                      L     F+    G+E         G +  E+    
Sbjct: 82   RGRVS------------------SLLGLGGGFNPELTGRENIYLNGRLLGLSRKEI--DE 121

Query: 1123 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 1182
            +   +  F S L +    PV       S G K R+A A A    P ILL+DE  +  DA 
Sbjct: 122  KIDEIIEF-SELGDFIDLPVKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAA 176

Query: 1183 -SECVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQG 1228
              E   +   E L +G+T +LV+H  S+I+ + D   V++ G+I   G
Sbjct: 177  FQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 90.1 bits (224), Expect = 1e-19
 Identities = 67/232 (28%), Positives = 118/232 (50%), Gaps = 13/232 (5%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E +++ +SYP   + +   +F      G+ VA++G +G+GKST+         P +G V
Sbjct: 2   LETRDLKYSYPDGTEALKGINFKA--EKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59

Query: 425 LLDNVDIK--TLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAA 480
           L+    IK     L  +R  +G+V Q P   LFA T+ E++ +G     +++ E      
Sbjct: 60  LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119

Query: 481 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA-GSE 539
            A   + +   G+  +       LSGGQK+R+AIA  +   P+I++LDE TS LD  G+ 
Sbjct: 120 EALKAVGM--EGFENKPPH---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174

Query: 540 SIVQEALDRLMVGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELIA 590
            I++   D    G T ++  H +  +    D V V+  G++++ GT +E+ +
Sbjct: 175 QIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226

Length = 275

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 93.1 bits (232), Expect = 2e-19
 Identities = 85/250 (34%), Positives = 125/250 (50%), Gaps = 43/250 (17%)

Query: 369 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKS-TVVSLIERFYDPNAGH---- 423
           +V F       V   +  S    AG+T+A+VG SGSGKS T +S++     P A H    
Sbjct: 13  SVAFHQEGG-TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGS 71

Query: 424 VLLDNVDIKTL---QLRWLR-DQIGLVNQEPALFATTILENILYGKPEATMAE------- 472
           +L D  D+      QLR +R ++IG++ QEP     T L N L+      +AE       
Sbjct: 72  ILFDGEDLLAASERQLRGVRGNKIGMIFQEP----MTSL-NPLH-TIGKQLAEVLRLHRG 125

Query: 473 VEAAASAANAHSFITLLPNGYSTQVG----ERGV-----QLSGGQKQRIAIARAMLKNPK 523
           +  AA+ A A   + LL       VG    E+ +     +LSGGQ+QR+ IA A+   P 
Sbjct: 126 LSRAAARARA---LELL-----ELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPD 177

Query: 524 ILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVV 580
           +L+ DE T+ALD   ++ + + L  L   +G   + + H L  +R   D V V+Q G++V
Sbjct: 178 LLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237

Query: 581 ETGTHEELIA 590
           ETGT E L A
Sbjct: 238 ETGTTETLFA 247

Length = 534

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 89.6 bits (222), Expect = 2e-19
 Identities = 73/267 (27%), Positives = 127/267 (47%), Gaps = 33/267 (12%)

Query: 338 LMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVA 397
           +++++++K  I   P            +E K+++  Y  +  V    D S+        A
Sbjct: 1   VVQMVREKIEIAPFPE------AKEHILEVKDLSIYYGEKRAV---NDISMDIEKHAVTA 51

Query: 398 VVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDI--KTLQLRWLRDQIGLVNQEP 450
           ++G SG GKST +  I R  D  P+A   G +L + ++I    + +  LR +IG+V Q+P
Sbjct: 52  LIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111

Query: 451 ALFATTILENILYG------KPEATMAEV--EAAASAANAHSFITLLPNGYSTQVGERGV 502
             F  +I  NI +       + ++ + E+  E+   AA        L +    ++    +
Sbjct: 112 NPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAA--------LWDEVKDRLHSSAL 163

Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL 562
            LSGGQ+QR+ IAR +   P +LLLDE  SALD  S + ++E +  L    + ++V H +
Sbjct: 164 SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNM 223

Query: 563 -STIRNVDTVAVIQQGQVVETGTHEEL 588
              +R  D  A    G +VE    E++
Sbjct: 224 QQALRVSDRTAFFLNGDLVEYDQTEQI 250

Length = 268

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 88.4 bits (219), Expect = 2e-19
 Identities = 67/239 (28%), Positives = 109/239 (45%), Gaps = 32/239 (13%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            I+L  ++  Y +        D  L    G++  L+G SG+GKSS++ ++     P +G +
Sbjct: 3    IQLNGINCFYGAHQ---ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59

Query: 1070 MIDGKDIRRLNLKS------LRLKIGLVQQEPALFA-ASIFDNI--------AYGKEGAT 1114
             I G         S      LR  +G+V Q+  L+   ++ +N+           K+ A 
Sbjct: 60   NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQA- 118

Query: 1115 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 1174
             A   +  +   +  +    P           + LSGGQ+QR+AIARA++  P +LL DE
Sbjct: 119  LARAEKLLKRLRLKPYADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLFDE 167

Query: 1175 ATSALDAESECVLQEALERLMR-GRTTVLVAHRLSTIRGVDCIGV-VQDGRIVEQGSHS 1231
             T+ALD E    +   ++ L   G T V+V H +   R      V +++G IVEQG  S
Sbjct: 168  PTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226

Length = 242

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 71/249 (28%), Positives = 114/249 (45%), Gaps = 52/249 (20%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            I+L  ++  Y +     +F D  L    G++  L+G SG+GKSS++ ++     P +G +
Sbjct: 3    IQLNGINCFYGA--HQALF-DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59

Query: 1070 MI-----------DGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNI--AYGK-EGAT 1114
             I             K IR      LR  +G+V Q+  L+   ++  N+  A  +  G +
Sbjct: 60   NIAGNHFDFSKTPSDKAIR-----ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLS 114

Query: 1115 EAEVVEAARAA----NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAIL 1170
            + + +  A        +  +    P           + LSGGQ+QR+AIARA++  P +L
Sbjct: 115  KDQALARAEKLLERLRLKPYADRFP-----------LHLSGGQQQRVAIARALMMEPQVL 163

Query: 1171 LLDEATSALDAE--SECV-----LQEALERLMRGRTTVLVAHRLSTIRGVDCIGV-VQDG 1222
            L DE T+ALD E  ++ V     L E       G T V+V H +   R      V +++G
Sbjct: 164  LFDEPTAALDPEITAQIVSIIRELAET------GITQVIVTHEVEVARKTASRVVYMENG 217

Query: 1223 RIVEQGSHS 1231
             IVEQG  S
Sbjct: 218  HIVEQGDAS 226

Length = 242

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 89.5 bits (222), Expect = 2e-19
 Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 24/235 (10%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE +++ +SY    + +   + +   P    +AV+G +G+GKST+         P +G V
Sbjct: 4   IETRDLCYSYSGSKEAL--NNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYGK-----PEATMAE-VEAA 476
           L+    I    +R +R  +GLV Q P   +F+ T+ ++I +G       E T+A  V +A
Sbjct: 62  LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121

Query: 477 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
                       +P+            LSGG+K+R+AIA  +   P++L+LDE T+ LD 
Sbjct: 122 LHMLGLEELRDRVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDP 170

Query: 537 GSESIVQEALDRLMV--GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
                + + L+ L    G T +   H+L  +  + D + V+ +G++V  GT EE+
Sbjct: 171 QGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225

Length = 277

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 89.8 bits (222), Expect = 2e-19
 Identities = 63/232 (27%), Positives = 123/232 (53%), Gaps = 18/232 (7%)

Query: 365 IEFKNVTFSY-PSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 421
           I+F+ V ++Y P+ P     +F D  +    G   A++G +GSGKST++  +     P  
Sbjct: 2   IKFEKVNYTYQPNSPFASRALF-DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60

Query: 422 GHVLLDNVDI----KTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEA 475
           G V + ++ +    K  +++ +R ++G+V Q P   LF  T+L+++ +G     + + +A
Sbjct: 61  GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKA 120

Query: 476 AASAANAHSFITLLPNGYSTQVGERG-VQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
              AA     +     G + +  E+   +LSGGQ +R+AIA  +   P++L+LDE T+ L
Sbjct: 121 EKIAAEKLEMV-----GLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGL 175

Query: 535 DAGSESIVQEALDRL-MVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT 584
           D  +   + +  + +   G+T V+V H +  + +  D V ++++G ++  GT
Sbjct: 176 DPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227

Length = 288

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 92.7 bits (231), Expect = 3e-19
 Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 34/222 (15%)

Query: 988  DRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGAS 1047
             +        P     + +   +E  +V   Y      ++ KD + RI  G   A+VG +
Sbjct: 303  GKPLAFRFPPPGKRLGKLV---LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPN 357

Query: 1048 GSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE-PALFAA-SIFDN 1105
            G+GKS+++ L+     P +G V           +K     IG   Q    L    ++ + 
Sbjct: 358  GAGKSTLLKLLAGELGPLSGTV------KVGETVK-----IGYFDQHRDELDPDKTVLEE 406

Query: 1106 IAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 1165
            ++ G     E EV          G         + PVG     LSGG+K R+ +A+ +L+
Sbjct: 407  LSEGFPDGDEQEVRAYLGRFGFTG------EDQEKPVGV----LSGGEKARLLLAKLLLQ 456

Query: 1166 NPAILLLDEATSALDAESECVLQEALERLMRGR--TTVLVAH 1205
             P +LLLDE T+ LD ES     EALE  +     T +LV+H
Sbjct: 457  PPNLLLLDEPTNHLDIES----LEALEEALLDFEGTVLLVSH 494

Length = 530

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 93.2 bits (232), Expect = 3e-19
 Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 18/226 (7%)

Query: 1010 IELRHVDFAYPS-RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            +EL+ +  +YPS    V V K  +L I AG+  A+VGASGSGKS+++ ++     PT+G 
Sbjct: 5    LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64

Query: 1069 VMIDGKDIRRLNLKSL----RLKIGLVQQE----PALFAASIFDNIAYGKEGATEAEVVE 1120
              + G+D+  L+  +L    R   G + Q       L AA    N+   +  A  A +  
Sbjct: 65   YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQ---NV---EVPAVYAGLER 118

Query: 1121 AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 1180
              R       +  L    +  V  +  QLSGGQ+QR++IARA++    ++L DE T ALD
Sbjct: 119  KQRLLRAQELLQRLGLEDR--VEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176

Query: 1181 AESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 1225
            + S   +   L +L  RG T ++V H        + +  ++DG IV
Sbjct: 177  SHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222

Length = 648

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 89.0 bits (221), Expect = 3e-19
 Identities = 67/240 (27%), Positives = 116/240 (48%), Gaps = 25/240 (10%)

Query: 1010 IELRHVDFAYPSRPD---VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 1066
            I+ ++V + Y S  +    +   D NL ++ G+   ++G +GSGKS++   +     P+ 
Sbjct: 5    IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64

Query: 1067 GKVMIDGKDIRRL-NLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAE---- 1117
            GKV +DG D     NL  +R K G+V Q P   + A  + +++A+G E  G    E    
Sbjct: 65   GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124

Query: 1118 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 1177
            V E+ +   ++ +    P+            LSGGQKQR+AIA  +   P  ++ DE T+
Sbjct: 125  VDESLKKVGMYEYRRHAPHL-----------LSGGQKQRVAIAGILAMRPECIIFDEPTA 173

Query: 1178 ALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 1235
             LD      +   ++ L +  G T +L+ H +      D I V+  G++V +G+  E+  
Sbjct: 174  MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK 233

Length = 280

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 54/229 (23%), Positives = 104/229 (45%), Gaps = 22/229 (9%)

Query: 1010 IELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            I    +   +   +  V      +  ++ G+   L+G +G+GK++ + ++    +P AG 
Sbjct: 2    ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61

Query: 1069 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAY-----GKEG-ATEAEVVEA 1121
              +DG D+ +      R ++G V     L+   +  +N+ Y     G +G    A + E 
Sbjct: 62   ATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEEL 120

Query: 1122 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
            A    +   +             R    S G +Q++AIARA++ +P +LLLDE T+ LD 
Sbjct: 121  ADRLGMEELLD-----------RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV 169

Query: 1182 ESECVLQEALERLMRGRTTVLVA-HRLSTIRGV-DCIGVVQDGRIVEQG 1228
             +   L+E + +L      +L + H +  +  + D + V+  GR+V +G
Sbjct: 170  MATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 92.5 bits (230), Expect = 3e-19
 Identities = 81/285 (28%), Positives = 131/285 (45%), Gaps = 50/285 (17%)

Query: 997  DPDAEPVETIRGEIELRHVD---FAYPSRPDV--------VVFKDFNLRIRAGQSQALVG 1045
            +P  +PV        L  V+    A+P R  +        VV K+ +  +R G++  LVG
Sbjct: 260  EPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVG 319

Query: 1046 ASGSGKSSV-IALIERFYDPTAGKVMIDGKDIRRLNLKSL---RLKIGLVQQEP------ 1095
             SGSGKS+  +AL+      + G++  DG+ +  LN + L   R +I +V Q+P      
Sbjct: 320  ESGSGKSTTGLALLRLI--NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNP 377

Query: 1096 ALFAASIFDNIAYGKE--------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGV 1147
             L    I   I  G             E +V+         G      + Y         
Sbjct: 378  RLNVLQI---IEEGLRVHQPTLSAAQREQQVIAVMEEV---GLDPETRHRYPA------- 424

Query: 1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR--TTVLVAH 1205
            + SGGQ+QRIAIARA++  P++++LDE TS+LD   +  +   L+ L +      + ++H
Sbjct: 425  EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISH 484

Query: 1206 RLSTIRGVDC--IGVVQDGRIVEQGSHSELVSRPDGAYSR-LLQL 1247
             L  +R + C  + V++ G +VEQG    + + P   Y+R LL L
Sbjct: 485  DLHVVRAL-CHQVIVLRQGEVVEQGDCERVFAAPQQEYTRQLLAL 528

Length = 529

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 89.4 bits (222), Expect = 3e-19
 Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 32/259 (12%)

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 444
           +F +    G+    +G +G+GK+T + ++     P +G   +   D+   + R +R  IG
Sbjct: 13  NFKV--REGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV-VREPRKVRRSIG 69

Query: 445 LVNQEPALF-ATTILENI-----LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVG 498
           +V Q  ++    T  EN+     LYG P+      EA   A        L       +  
Sbjct: 70  IVPQYASVDEDLTGRENLEMMGRLYGLPKD-----EAEERAEELLELFEL------GEAA 118

Query: 499 ERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTV 556
           +R V   SGG ++R+ IA +++  P +L LDE T+ LD  +   + + +  L   G T +
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178

Query: 557 VVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPST 615
           +  H +     + D +A+I  G+++  GT EEL  + G         + + +R     S 
Sbjct: 179 LTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGK--------DTLESRPRDIQSL 230

Query: 616 RRSRSTRLSHSLSTKSLSL 634
           +   S  L   L    L L
Sbjct: 231 KVEVS-MLIAELGETGLGL 248

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 93.8 bits (233), Expect = 4e-19
 Identities = 133/638 (20%), Positives = 261/638 (40%), Gaps = 94/638 (14%)

Query: 38   WCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCK---------YAL 88
            +CL+IF         +S+   +L+          +Q   +  + +V K         Y +
Sbjct: 872  FCLVIF----LAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYI 927

Query: 89   YFVYLGLIVCFSSYAEIACWMYTGERQVSTL-------RKKYLEAVLKQDVGFFDTDART 141
            +++Y+G          +A   + G   V TL        ++ L +VL+  +   +T  + 
Sbjct: 928  FYIYVGTADSV-----LALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT-MKA 981

Query: 142  GDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFA 201
            G I+   + D  ++ D +   + +FI      L  + V  VS  +  +  IA IP     
Sbjct: 982  GRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFV--VSVLQPYIF-IAAIPVAVIF 1038

Query: 202  GGLYAYTL-TGLTSKSRESYANAGIIAEQAIA--QVRTVYSYVGES-------KALNSYS 251
              L AY L T    K  ES A + I +    +   + T+ ++  +S       KALN ++
Sbjct: 1039 IMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHT 1098

Query: 252  DAIQ----NTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTA 307
             A      +TL+                + +      + F+ A  FI  G    G+    
Sbjct: 1099 -ANWFLYLSTLRW---------------FQMRIDIIFVFFFIAVTFIAIGTNQDGEGEVG 1142

Query: 308  IFSAIVGGMSLGQSFS-------NLGAFSKGKAAGYKLMEIIKQKPS------------- 347
            I   +   M++  +         ++    +  +  +K +++ +++P              
Sbjct: 1143 IILTL--AMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTV 1200

Query: 348  -IIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGK 406
             +I++P   +C     G ++ + +T  Y      ++ +D S     G+ V ++G +GSGK
Sbjct: 1201 LVIENPHAQKCWPS-GGQMDVQGLTAKYTEAGRAVL-QDLSFSVEGGQRVGLLGRTGSGK 1258

Query: 407  STVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP 466
            ST++S + R      G + +D V   ++ L+  R   G++ Q+  +F+ T  +N+    P
Sbjct: 1259 STLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL---DP 1314

Query: 467  EATMA--EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI 524
                +  E+   A      S I   P+     + + G  LS G KQ + +AR++L   KI
Sbjct: 1315 YEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKI 1374

Query: 525  LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 584
            LLLDE ++ LD  +  I+++ L +     T ++  HR+  +       VI+   V +  +
Sbjct: 1375 LLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDS 1434

Query: 585  HEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTR 622
             ++L+ +   +   +   +  R + F  P  RR+ S R
Sbjct: 1435 IQKLLNETSLFKQAMSAAD--RLKLF--PLHRRNSSKR 1468

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 93.4 bits (232), Expect = 4e-19
 Identities = 73/262 (27%), Positives = 123/262 (46%), Gaps = 25/262 (9%)

Query: 382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 441
           + ++ S     G+ +AV G +GSGKS+++ +I    +P+ G +                 
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487

Query: 442 QIGLVNQEPALFATTILENILYGKPEATMAEVE--AAASAANAHSFITLLPNGYSTQVGE 499
           +I    Q   +   TI +NI++G    +  E    +   A      I L P    T +GE
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFG---LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGE 544

Query: 500 RGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTTVVV 558
            G+ LSGGQ+ RI++ARA+ K+  + LLD   + LD  +E  I +  L +LM  +T ++V
Sbjct: 545 GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILV 604

Query: 559 AHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRS 618
             +L  ++  D + ++ +G     GT  EL AK   ++SL+   E      F N S  R 
Sbjct: 605 TSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLE-----AFDNFSAER- 658

Query: 619 RSTRLSHSLSTKSLSLRSGSLR 640
           R++ L+ +L   S+   S    
Sbjct: 659 RNSILTETLRRVSIDGDSTVFS 680

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 91.0 bits (226), Expect = 4e-19
 Identities = 71/234 (30%), Positives = 114/234 (48%), Gaps = 21/234 (8%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI-DGK---DIRRL 1079
             V+   + +L I  G+   L+G SGSGKS+++  +      + G V++ DG    D+   
Sbjct: 36   LVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANC 95

Query: 1080 NLKSLRL----KIGLVQQEPALFA-ASIFDNIAYGKE--GATEAEVVEAARAANVHGFVS 1132
            +  +LR     ++ +V Q+ AL    ++ +N+A+G E  G  +AE  +  R       V 
Sbjct: 96   DAATLRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRK--RVDEQLELVG 153

Query: 1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 1192
             L        GE    LSGG +QR+ +ARA      ILL+DE  SALD      LQ+ L 
Sbjct: 154  -LAQWADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELL 208

Query: 1193 RLMR--GRTTVLVAHRL-STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 1243
             L     +T V V+H L   ++  + I +++ GRI++ G+  E+V  P   Y  
Sbjct: 209  ELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 88.1 bits (218), Expect = 5e-19
 Identities = 66/191 (34%), Positives = 94/191 (49%), Gaps = 21/191 (10%)

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDIKTLQLRW- 438
           D  +  PA K +A +G SG GKST++    R  D  P A   G +L  + +I   Q+   
Sbjct: 38  DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97

Query: 439 -LRDQIGLVNQEPALFATTILENILYGKPEATMAE------VEAAASAANAHSFITLLPN 491
            LR Q+G+V Q P  F  +I ENI +  P A   +      VE +   A        +  
Sbjct: 98  KLRRQVGMVFQRPNPFPKSIYENIAFA-PRANGYKGNLDELVEDSLRRA-------AIWE 149

Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV 551
               ++ E+G  LSGGQ+QR+ IARA+   P +LL+DE  SALD  S   V+E    L  
Sbjct: 150 EVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE 209

Query: 552 GRTTVVVAHRL 562
             T ++V H +
Sbjct: 210 QYTIIMVTHNM 220

Length = 274

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 88.6 bits (219), Expect = 6e-19
 Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 30/247 (12%)

Query: 1010 IELRHVDFAY-PSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            I+   V++ Y P+ P       D +L ++ G   AL+G +GSGKS+++  +     PT G
Sbjct: 2    IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61

Query: 1068 KVMIDGKDI------RRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE----GATE 1115
            KV +   DI      ++  +K +R K+G+V Q P   LF  ++  ++A+G +       +
Sbjct: 62   KVTVG--DIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEK 119

Query: 1116 AEVVEAARAANVHGFVSALPNAY--KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD 1173
            AE + A +   V      L + +  K+P      +LSGGQ +R+AIA  +   P +L+LD
Sbjct: 120  AEKIAAEKLEMV-----GLADEFWEKSPF-----ELSGGQMRRVAIAGILAMEPEVLVLD 169

Query: 1174 EATSALDAESECVLQEALERLMR-GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 1231
            E T+ LD ++   + +  E + + G+T VLV H +  +    D + +++ G I+  G+ S
Sbjct: 170  EPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229

Query: 1232 ELVSRPD 1238
            ++    D
Sbjct: 230  DVFQEVD 236

Length = 288

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 89.4 bits (222), Expect = 6e-19
 Identities = 66/210 (31%), Positives = 103/210 (49%), Gaps = 19/210 (9%)

Query: 392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL---DNVDIKTLQLRWLRDQIGLVNQ 448
            G+T+ VVG SG GKST    I        G V     D + +K  + R +R  I ++ Q
Sbjct: 46  EGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQ 105

Query: 449 EP-------ALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERG 501
           +P             I E +    P+ +  EV+    A      + LLPN     +    
Sbjct: 106 DPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLK--VGLLPN----LINRYP 159

Query: 502 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVA 559
            + SGGQ QRI IARA++  PK+++ DE  SALD   ++ V   L +L   +G + + +A
Sbjct: 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIA 219

Query: 560 HRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
           H L+ ++++ D V V+  G  VE GT++E+
Sbjct: 220 HDLAVVKHISDRVLVMYLGHAVELGTYDEV 249

Length = 331

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score = 88.0 bits (218), Expect = 6e-19
 Identities = 65/261 (24%), Positives = 127/261 (48%), Gaps = 7/261 (2%)

Query: 363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 422
           G +  K++T  Y    + ++  + S     G+ V ++G +GSGKST++S   R  +   G
Sbjct: 1   GQMTVKDLTAKYTEGGNAVL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 58

Query: 423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENI-LYGKPEATMAEVEAAASAAN 481
            + +D V   ++ L+  R   G++ Q+  +F+ T  +N+  YGK   +  E+   A    
Sbjct: 59  DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGK--WSDEEIWKVAEEVG 116

Query: 482 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 541
             S I   P      + + G  LS G KQ + +AR++L   KILLLDE ++ LD  +  +
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176

Query: 542 VQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRF 601
           +++ L +     T ++  HR+  +       VI++ +V +  + ++L+ +   +   I  
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP 236

Query: 602 QEMVR--NRDFANPSTRRSRS 620
            + ++   R  ++ S R+ R 
Sbjct: 237 SDRLKLFPRRNSSKSKRKPRP 257

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 86.8 bits (215), Expect = 6e-19
 Identities = 64/182 (35%), Positives = 95/182 (52%), Gaps = 15/182 (8%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088
            K  NL I+ G+  +L+G SG GKS+++ LI     PT+G V+++GK I       +    
Sbjct: 2    KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM---- 57

Query: 1089 GLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANV--HGFVSALPNAYKTPVGER 1145
             +V Q  +L    ++ +NIA   +     ++ ++ R A V  H  +  L  A     G  
Sbjct: 58   -VVFQNYSLLPWLTVRENIALAVD-RVLPDLSKSERRAIVEEHIALVGLTEAADKRPG-- 113

Query: 1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLV 1203
              QLSGG KQR+AIARA+   P +LLLDE   ALDA +   LQE L ++      T ++V
Sbjct: 114  --QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMV 171

Query: 1204 AH 1205
             H
Sbjct: 172  TH 173

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 86.3 bits (214), Expect = 7e-19
 Identities = 55/222 (24%), Positives = 101/222 (45%), Gaps = 22/222 (9%)

Query: 371 TFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 430
            F    +    +    S     G+   ++G +G+GK+T + ++    +P+AG   +D  D
Sbjct: 10  RFRDVKKTVQAV-DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD 68

Query: 431 IKTLQLRWLRDQIGLVNQEPALFA-TTILENI-----LYG-KPEATMAEVEAAASAANAH 483
           +   +    R ++G V+    L+   T  EN+     LYG K +   A +E  A      
Sbjct: 69  VVK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME 127

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
             +             R    S G +Q++AIARA++ +P +LLLDE T+ LD  +   ++
Sbjct: 128 ELLD-----------RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176

Query: 544 EALDRLMVGRTTVVVA-HRLSTIRNV-DTVAVIQQGQVVETG 583
           E + +L      ++ + H +  +  + D V V+ +G+VV  G
Sbjct: 177 EFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 87.2 bits (216), Expect = 8e-19
 Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 25/240 (10%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
             + L  V ++   R    +    ++    G    L+G +GSGKS+++ L+     P AG 
Sbjct: 1    GLRLSRVSWSAGGRL---IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGT 57

Query: 1069 VMIDGKDIRRLNLKSLRLKIGLVQQE-PALFAASIFDNIAYGK---------EGATEAEV 1118
            V + G D+  L+ ++   ++ LV+Q+       ++ D +A G+         +   +A V
Sbjct: 58   VDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAV 117

Query: 1119 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
            V+ A A               T        LSGG++QR+ +ARA+ + P +LLLDE T+ 
Sbjct: 118  VDRALART--ELSHLADRDMST--------LSGGERQRVHVARALAQEPKLLLLDEPTNH 167

Query: 1179 LDAESECVLQEALERLMRGRTTVLVA-HRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSR 1236
            LD  ++      +  L     TV+ A H L+      D + V+  GR+V  G   E+++ 
Sbjct: 168  LDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTP 227

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 86.9 bits (216), Expect = 8e-19
 Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 30/246 (12%)

Query: 1007 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 1066
               +   ++  +Y  R    V  D +L + +G+   L+G +G+GK++   +I     P +
Sbjct: 2    MSTLVAENLAKSYKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS 58

Query: 1067 GKVMIDGKDIRRLNL-KSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARA 1124
            GK+++D +DI +L + K  RL IG + QE ++F   ++ DNI        E    +  +A
Sbjct: 59   GKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNI----MAVLEIREKDLKKA 114

Query: 1125 ANVHGFVSALPNAYKTPV-GERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
                   + L   + T +   +   LSGG+++R+ IARA+  NP  +LLDE  + +D  +
Sbjct: 115  ERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174

Query: 1184 ECVLQEALERLM-RG----------RTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 1232
               +Q  ++ L  RG          R T+ +  R   I          DG+++ +GS  E
Sbjct: 175  VIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIIS---------DGKVLAEGSPEE 225

Query: 1233 LVSRPD 1238
            +V+  D
Sbjct: 226  IVNNED 231

Length = 243

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 86.9 bits (216), Expect = 8e-19
 Identities = 61/240 (25%), Positives = 96/240 (40%), Gaps = 38/240 (15%)

Query: 364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
               K +        +    +D S     G+ V ++G +G+GKST++ LI   Y P +G 
Sbjct: 24  KKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGK 83

Query: 424 VLLDNVDIKTLQLRWLRD-QIGLVNQEPALFATTILENI-LYG-----KPEATMAEVEAA 476
           V        T ++  L +   G   +       T  ENI L G       +    +V+  
Sbjct: 84  V------KVTGKVAPLIELGAGFDPE------LTGRENIYLRGLILGLTRKEIDEKVDEI 131

Query: 477 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
              A    FI      YS+           G   R+A + A    P ILLLDE  +  DA
Sbjct: 132 IEFAELGDFIDQPVKTYSS-----------GMYARLAFSVATHVEPDILLLDEVLAVGDA 180

Query: 537 GSESIVQEALDRLMV----GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 591
              +  ++ L+RL       +T V+V+H L  I+   D    ++ GQ+   G+ EE+I  
Sbjct: 181 ---AFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237

Length = 249

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 87.5 bits (217), Expect = 8e-19
 Identities = 72/237 (30%), Positives = 120/237 (50%), Gaps = 28/237 (11%)

Query: 1012 LRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 1071
            LR+V F  P R    +    +L   AG+   L+G +GSGKS+++ ++ R   P+ G++++
Sbjct: 14   LRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70

Query: 1072 DGKDIRRLNLKSLRLKIG-LVQQEPALFAASIFDNIAYGKE---------GATEAEVVEA 1121
            D + +   + K+   K+  L QQ PA    ++ + +A G+          GA + E VE 
Sbjct: 71   DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130

Query: 1122 ARAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALD 1180
            A +  + G           P+  R V  LSGG++QR  IA  V ++   LLLDE TSALD
Sbjct: 131  AIS--LVGL---------KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179

Query: 1181 AESECVLQEALERL--MRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELV 1234
               +  +   + RL   RG T + V H ++   R  D +  ++ G ++ QG+ +EL+
Sbjct: 180  IAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236

Length = 265

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 86.9 bits (215), Expect = 1e-18
 Identities = 72/239 (30%), Positives = 114/239 (47%), Gaps = 25/239 (10%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVS----LIERFYDPN 420
           IE +++  S+     V +    ++  P     A++G SGSGKST++     LIE + +  
Sbjct: 4   IEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60

Query: 421 -AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYG-------KPEATMA 471
            +G V LD  DI  + +  LR ++ +V Q P      +I EN+  G       K +  + 
Sbjct: 61  VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ 120

Query: 472 E-VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 530
           E V  A   A        L +    ++     +LSGGQ+QR+ IARA+   P++LL DE 
Sbjct: 121 ERVRWALEKAQ-------LWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEP 173

Query: 531 TSALDAGSESIVQEALDRLMVGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
           T+ LD  + + ++     L    T V+V H      R  D VA + +GQ+VE G   E+
Sbjct: 174 TANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232

Length = 250

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 20/190 (10%)

Query: 382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRW 438
           +  D ++    G+ V + G SGSGK+T+++LI        G + +   ++      +L  
Sbjct: 20  VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79

Query: 439 LRDQIGLVNQEPALF-ATTILENILYGKPEATMA-----EVEAAASAANAHSFITLLPNG 492
           LR  IG + Q   L    T  +N+        MA      +    +   A + +  +  G
Sbjct: 80  LRRNIGYIFQAHNLLGFLTARQNV-------QMALELQPNLSYQEARERARAMLEAV--G 130

Query: 493 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV- 551
               +      LSGGQKQR+AIARA++  PK++L DE T+ALD+ S   V E + +L   
Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190

Query: 552 -GRTTVVVAH 560
            G T ++V H
Sbjct: 191 QGCTILIVTH 200

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 13/229 (5%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE KNV+     +    I  D S     G+  A+VG +G+GK+T++SL+   + P++G V
Sbjct: 32  IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88

Query: 425 LLDNVDIKTLQLRW-LRDQIGLVN---QEPALFATTILENILYGKPEATMAEVEAAASAA 480
            L        +  + LR +IGLV+    E      T+ + +L G   A++   +   +A 
Sbjct: 89  TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGF-FASIGIYQEDLTAE 147

Query: 481 NAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
           +  +   LL    +  + +R    LS G+++R+ IARA++K+P++L+LDE    LD  + 
Sbjct: 148 DLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAR 207

Query: 540 SIVQEALDRLMV---GRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGT 584
             +   L+ L         + V H    I        ++++G+VV  G 
Sbjct: 208 EQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256

Length = 257

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 88.2 bits (219), Expect = 1e-18
 Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 25/227 (11%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 1083
            D       N ++R G+    +G +G+GK++ I ++     PT+G   + G D+ R   + 
Sbjct: 5    DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRK 63

Query: 1084 LRLKIGLVQQEPALFAASIFDNIAYGKE---------GATEAEVVEAARAANVHGFVSAL 1134
            +R  IG+V Q  ++      D    G+E         G  + E  E  RA  +      L
Sbjct: 64   VRRSIGIVPQYASV------DEDLTGRENLEMMGRLYGLPKDEAEE--RAEELLELFE-L 114

Query: 1135 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 1194
              A   PVG      SGG ++R+ IA +++  P +L LDE T+ LD  +   + + +  L
Sbjct: 115  GEAADRPVG----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170

Query: 1195 MR-GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDG 1239
               G T +L  H +     + D I ++  GRI+ +G+  EL  R   
Sbjct: 171  KEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGK 217

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 53/224 (23%), Positives = 111/224 (49%), Gaps = 19/224 (8%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E +NVT  +     V    D S     G+   ++G +G+GK+T + +I     P++G V
Sbjct: 1   LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57

Query: 425 LLDN--VDIKTLQLRWLRDQIGLVNQEPALF-ATTILENILYGKPEATMAEVEAAASAAN 481
           L D   +DI        R++IG + +E  L+    +++ ++Y    A +  ++   +   
Sbjct: 58  LFDGKPLDIAA------RNRIGYLPEERGLYPKMKVIDQLVY---LAQLKGLKKEEARRR 108

Query: 482 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 541
              ++  L    S    +R  +LS G +Q++    A++ +P++L+LDE  S LD  +  +
Sbjct: 109 IDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVEL 166

Query: 542 VQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 583
           +++ +  L   G+T ++  H++  +  + D V ++ +G+ V  G
Sbjct: 167 LKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 16/178 (8%)

Query: 374 YPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT 433
           Y  +P      D ++   +G+ + V+G SG GK+T+++LI  F     G + LD   ++ 
Sbjct: 11  YGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG 67

Query: 434 LQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNG 492
                   + G+V Q   L     + +N+ +G   A + +++    A      + L    
Sbjct: 68  PGA-----ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGL---- 118

Query: 493 YSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL 549
                 +R + QLSGGQ+QR+ IARA+  NP++LLLDE   ALDA +   +Q  L +L
Sbjct: 119 --EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKL 174

Length = 255

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 86.4 bits (214), Expect = 2e-18
 Identities = 70/231 (30%), Positives = 112/231 (48%), Gaps = 18/231 (7%)

Query: 368 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 427
           +NV+F  P R    +    S+ FPAGK   ++G +GSGKST++ ++ R   P+ G +LLD
Sbjct: 15  RNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLD 71

Query: 428 NVDIKTLQLRWLRDQIG-LVNQEPALFATTILENILYGKPEATMA----EVEAAASAANA 482
              +++   +    ++  L  Q PA    T+ E +  G+     A              A
Sbjct: 72  AQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEA 131

Query: 483 HSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 541
            S + L P      +  R V  LSGG++QR  IA  + ++ + LLLDE TSALD   +  
Sbjct: 132 ISLVGLKP------LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVD 185

Query: 542 VQEALDRL--MVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 589
           V   + RL    G T + V H ++   R  D +  ++ G+++  GT  EL+
Sbjct: 186 VLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236

Length = 265

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 86.8 bits (215), Expect = 2e-18
 Identities = 64/210 (30%), Positives = 107/210 (50%), Gaps = 12/210 (5%)

Query: 382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRW 438
           +  + S+    G+TV ++G SG GKST+  L+     P  G V     D+  L   Q R 
Sbjct: 26  VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85

Query: 439 LRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQ 496
            R  + LV Q+   A+     +  I+ G+P   +  ++ +   A     + ++  G  ++
Sbjct: 86  FRRDVQLVFQDSPSAVNPRMTVRQII-GEPLRHLTSLDESEQKARIAELLDMV--GLRSE 142

Query: 497 VGER-GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGR 553
             ++   QLSGGQ QRI IARA+   PK+++LDEA S LD   ++++ E L +L    G 
Sbjct: 143 DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGT 202

Query: 554 TTVVVAHRLSTIRNV-DTVAVIQQGQVVET 582
             + + H L  +++    VAV+ +GQ+VE 
Sbjct: 203 AYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 86.4 bits (214), Expect = 2e-18
 Identities = 72/231 (31%), Positives = 110/231 (47%), Gaps = 17/231 (7%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKS 1083
            V  + +L I  G++  L+G SG GKS++  L+     P  G V   G+D+ +L+    ++
Sbjct: 26   VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRA 85

Query: 1084 LRLKIGLV-QQEPALFAA--SIFDNIAYGKEGATE-AEVVEAARAANVHGFVSALPN-AY 1138
             R  + LV Q  P+      ++   I       T   E  + AR A +   V      A 
Sbjct: 86   FRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDAD 145

Query: 1139 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-- 1196
            K P      QLSGGQ QRI IARA+   P +++LDEA S LD   + V+ E L +L +  
Sbjct: 146  KLP-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAF 200

Query: 1197 GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 1246
            G   + + H L  +      + V+  G+IVE+   ++L+S    A  R LQ
Sbjct: 201  GTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPA-GRNLQ 250

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 85.5 bits (211), Expect = 3e-18
 Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 11/232 (4%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----P 419
           IE +N+   Y    D     + +I        A++G SG GKST +  + R  D      
Sbjct: 8   IETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64

Query: 420 NAGHVLLDNVDI--KTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAA 477
             G+V+ +  +I      +  LR +IG+V Q P  F  +I +NI YG       + +   
Sbjct: 65  IEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLD 124

Query: 478 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
                    + L N    ++    + LSGGQ+QR+ IAR +   P ++L+DE TSALD  
Sbjct: 125 EIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPI 184

Query: 538 SESIVQEALDRLMVGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEEL 588
           S   ++E +  L    T ++V H +    R  D  A    G + E  + +EL
Sbjct: 185 STGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236

Length = 254

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 36/220 (16%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 1083
             V    D +  +  G+   L+G +G+GK++ I +I     P +G+V+ DGK +      +
Sbjct: 12   RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD----IA 67

Query: 1084 LRLKIGLVQQEPALF-AASIFDNIAY-------GKEGATEA-----EVVEAARAANVHGF 1130
             R +IG + +E  L+    + D + Y        KE A        E +E +  AN    
Sbjct: 68   ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN---- 123

Query: 1131 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA 1190
                         +R  +LS G +Q++    AV+ +P +L+LDE  S LD  +  +L++ 
Sbjct: 124  -------------KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDV 170

Query: 1191 LERLMR-GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQG 1228
            +  L R G+T +L  H++  +    D + ++  GR V  G
Sbjct: 171  IRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 85.6 bits (213), Expect = 3e-18
 Identities = 65/240 (27%), Positives = 111/240 (46%), Gaps = 32/240 (13%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +E R++      R    +  D +L +R G+  A++G +G+GKS+++  +     P +G+V
Sbjct: 3    LEARNLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPAL-FAASIFDNIAYG------KEGATEAEVVEAA 1122
             ++G+ +   +   L  +  ++ Q  +L F  ++ + +A G           +A V  A 
Sbjct: 60   RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119

Query: 1123 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL-------KNPAILLLDEA 1175
               ++          Y         QLSGG++QR+ +AR VL         P  LLLDE 
Sbjct: 120  AQVDLAHLAG---RDYP--------QLSGGEQQRVQLAR-VLAQLWEPDGPPRWLLLDEP 167

Query: 1176 TSALD-AESECVLQEALERLMRGRTTVL-VAHRLS-TIRGVDCIGVVQDGRIVEQGSHSE 1232
            TSALD A    VL+ A +        V+ V H L+   R  D I ++  GR+V  G+ +E
Sbjct: 168  TSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227

Length = 258

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 86.4 bits (214), Expect = 4e-18
 Identities = 66/251 (26%), Positives = 119/251 (47%), Gaps = 48/251 (19%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            I+ R+V+  Y    D +V    +  ++ G+   L+G +G+GK++ + ++     P AG +
Sbjct: 8    IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIA---------------YGKEGAT 1114
             + G+ +     +  R ++G+V Q         FDN+                +G   A 
Sbjct: 65   SLCGEPVPS-RARHARQRVGVVPQ---------FDNLDPDFTVRENLLVFGRYFGLSAAA 114

Query: 1115 EAEVV----EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAIL 1170
               +V    E A+          L N     VGE    LSGG K+R+ +ARA++ +P +L
Sbjct: 115  ARALVPPLLEFAK----------LENKADAKVGE----LSGGMKRRLTLARALVNDPDVL 160

Query: 1171 LLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQG 1228
            +LDE T+ LD ++  ++ E L  L+ RG+T +L  H +    R  D + V+++GR + +G
Sbjct: 161  VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEG 220

Query: 1229 SHSELVSRPDG 1239
            +   L+    G
Sbjct: 221  APHALIESEIG 231

Length = 306

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 84.0 bits (208), Expect = 5e-18
 Identities = 68/228 (29%), Positives = 106/228 (46%), Gaps = 19/228 (8%)

Query: 365 IEFKNVTFSYPS-RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           IE  +++ +      ++ I +   +    G+TVA+VG SGSGKST+++++    DP++G 
Sbjct: 7   IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66

Query: 424 VLLDNVDIKTL------QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAA 476
           V L    +  L       LR     +G V Q   L    T LEN+      A   E+   
Sbjct: 67  VRLLGQPLHKLDEDARAALR--ARHVGFVFQSFHLIPNLTALENV------ALPLELRGE 118

Query: 477 ASAANAHSFITLLPN-GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD 535
           +SA +      LL   G   ++     QLSGG++QR+A+ARA    P +L  DE T  LD
Sbjct: 119 SSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLD 178

Query: 536 AGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVE 581
             +   + + L  L    G T V+V H        D    ++ G++VE
Sbjct: 179 RATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226

Length = 228

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 85.4 bits (211), Expect = 5e-18
 Identities = 69/242 (28%), Positives = 115/242 (47%), Gaps = 18/242 (7%)

Query: 362 NGNIEFKNVTFSYPSRPDVIIFR---DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD 418
           + +I   NV+++Y ++     F+   + S+ F   K   V+G +GSGKST++ L      
Sbjct: 4   SKDIILDNVSYTY-AKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62

Query: 419 PNAGHVLLDNVDI-----KTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMA 471
              G  ++ +  I     K  +++ LR +IGLV Q P   LF  TI ++I +G       
Sbjct: 63  SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGEN 122

Query: 472 EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT 531
           + EA          + L P  Y   V     +LSGGQK+R+A+A  +  +   L+LDE T
Sbjct: 123 KQEAYKKVPELLKLVQL-PEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPT 178

Query: 532 SALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEEL 588
             LD   E       +RL     +  ++V H +  + R  D V V+ +G+V+  G+  E+
Sbjct: 179 GGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238

Query: 589 IA 590
            +
Sbjct: 239 FS 240

Length = 289

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 84.5 bits (209), Expect = 6e-18
 Identities = 73/241 (30%), Positives = 111/241 (46%), Gaps = 27/241 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA--- 421
           IE  N+   Y     VI  +   +  P     A++G SG GKST++    R  + N    
Sbjct: 5   IETVNLRVYY-GSNHVI--KGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61

Query: 422 --GHVLLDNVDIKTLQLRWL--RDQIGLVNQEPALFA-TTILENILYG-------KPEAT 469
             G V L   +I +  +  +  R ++G+V Q P  F   TI +N+  G       K +  
Sbjct: 62  VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121

Query: 470 MAE-VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD 528
           + E VE A   A     +    N Y +        LSGGQ+QR+ IARA+   PKILL+D
Sbjct: 122 LDERVEWALKKAALWDEVKDRLNDYPSN-------LSGGQRQRLVIARALAMKPKILLMD 174

Query: 529 EATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEE 587
           E T+ +D    + ++E L  L    T V+V H  +    V D VA +  G+++E G   +
Sbjct: 175 EPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234

Query: 588 L 588
           +
Sbjct: 235 V 235

Length = 253

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 84.7 bits (209), Expect = 7e-18
 Identities = 67/226 (29%), Positives = 105/226 (46%), Gaps = 28/226 (12%)

Query: 384 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-------HVLLDNVDIKTLQL 436
           RD  +     +    +G SG GKSTV+  + R  D   G       H L  +V  K +  
Sbjct: 25  RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84

Query: 437 RWLRDQIGLVNQEPALFATTILENILYG----KPEATMAE-VEAAASAANAHSFITLLPN 491
             +R  IG+V Q+P  F+ +I +N+ +G    + +  + + V+ A   A        L +
Sbjct: 85  VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGA-------ALWD 137

Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV 551
               ++   G+ LSGGQ+QR+ IARA+   P++LLLDE  SALD  +   V+E +  L  
Sbjct: 138 EVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK 197

Query: 552 GRTTVVVAHRLSTIRNV-DTVAVI--------QQGQVVETGTHEEL 588
             T  +V H +     V DT A          + G +VE G   ++
Sbjct: 198 DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQI 243

Length = 261

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 84.2 bits (209), Expect = 7e-18
 Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 40/242 (16%)

Query: 368 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 427
           +N+  SY  R  V    D S+   +G+ V ++G +G+GK+T   +I     P++G +LLD
Sbjct: 8   ENLAKSYKKRKVV---NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLD 64

Query: 428 NVDIKTLQL-RWLRDQIGLVNQEPALF-ATTILENIL------YGKPEATMAEVEAAASA 479
           + DI  L + +  R  IG + QE ++F   T+ +NI+          +    + E  A  
Sbjct: 65  DEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALL 124

Query: 480 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
              H  IT L +        +   LSGG+++R+ IARA+  NPK +LLDE  + +D  + 
Sbjct: 125 EEFH--ITHLRD-------SKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAV 175

Query: 540 SIVQEALDRLMVGRTTVVVAHR----LSTIRNV-------DTVAVIQQGQVVETGTHEEL 588
             +Q  +  L           R    L T  NV       D   +I  G+V+  G+ EE+
Sbjct: 176 IDIQRIIKHL---------KDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEI 226

Query: 589 IA 590
           + 
Sbjct: 227 VN 228

Length = 243

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 83.4 bits (207), Expect = 9e-18
 Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 61/252 (24%)

Query: 365 IEFKNVTFSYPS-------------------RPDVIIFRDFSIFFPAGKTVAVVGGSGSG 405
           IE +NV+ SYP+                     +    +D S   P G+ + ++G +G+G
Sbjct: 1   IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60

Query: 406 KSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD-QIGLVNQEPALFATTILENI--- 461
           KST++ L+   Y P++G V +        ++  L     G     P L   T  ENI   
Sbjct: 61  KSTLLRLLAGIYPPDSGTVTVRG------RVSSLLGLGGGF---NPEL---TGRENIYLN 108

Query: 462 --LYGKPEATMAEVEAAASAANAHSFI---TLLPNGYSTQVGERGVQLSGGQKQRIAIAR 516
             L G     + E             I   + L +     V       S G K R+A A 
Sbjct: 109 GRLLGLSRKEIDEKID---------EIIEFSELGDFIDLPVKT----YSSGMKARLAFAI 155

Query: 517 AMLKNPKILLLDEATSALDAGSESIVQEALDRL--MV--GRTTVVVAHRLSTIRNV-DTV 571
           A    P ILL+DE  +    G  +  ++   RL  ++  G+T ++V+H  S+I+ + D  
Sbjct: 156 ATALEPDILLIDEVLA---VGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRA 212

Query: 572 AVIQQGQVVETG 583
            V+++G++   G
Sbjct: 213 LVLEKGKIRFDG 224

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 87.8 bits (218), Expect = 9e-18
 Identities = 76/253 (30%), Positives = 121/253 (47%), Gaps = 54/253 (21%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKS----SVIALIERFYDPT------AGKVMIDGKDI 1076
            V  D +L+I AG++ ALVG SGSGKS    S++ L+     P+      +G +   G+ +
Sbjct: 24   VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL-----PSPPVVYPSGDIRFHGESL 78

Query: 1077 RRLNLKSLRL----KIGLVQQEPALFAASIFDNIAYGKEGATEAEVV--------EAARA 1124
               + ++LR     KI ++ QEP + + +    +          EV+        EAAR 
Sbjct: 79   LHASEQTLRGVRGNKIAMIFQEP-MVSLNPLHTLE-----KQLYEVLSLHRGMRREAARG 132

Query: 1125 ANVHGFVSALPNAYKTPVGERGV---------QLSGGQKQRIAIARAVLKNPAILLLDEA 1175
                  ++ L       VG R           QLSGG++QR+ IA A+L  P +L+ DE 
Sbjct: 133  E----ILNCLDR-----VGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEP 183

Query: 1176 TSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSE 1232
            T+ALD   +  + + L  L +      + + H LS +R + D + V+Q+GR VEQ   + 
Sbjct: 184  TTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAAT 243

Query: 1233 LVSRPDGAYSRLL 1245
            L S P   Y++ L
Sbjct: 244  LFSAPTHPYTQKL 256

Length = 529

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 84.1 bits (208), Expect = 1e-17
 Identities = 63/205 (30%), Positives = 97/205 (47%), Gaps = 26/205 (12%)

Query: 394 KTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDI--KTLQLRWLRDQIGLV 446
           +  A++G SG GKST +  + R  +        G +L  + +I  K+  +  LR  +G+V
Sbjct: 51  EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMV 110

Query: 447 NQEPALFATTILENILYG------KPEATMAE-VEAAASAANAHSFIT--LLPNGYSTQV 497
            Q+P  F  +I +N+ YG      K + T+ E VE +   A     +   L  N Y    
Sbjct: 111 FQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYG--- 167

Query: 498 GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVV 557
                 LSGGQ+QR+ IAR +   P ++L+DE TSALD  S   V+E +  L    + ++
Sbjct: 168 ------LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIII 221

Query: 558 VAHRLSTIRNV-DTVAVIQQGQVVE 581
           V H +     + D  A    G V E
Sbjct: 222 VTHNMQQAARISDKTAFFLNGYVNE 246

Length = 271

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 84.5 bits (209), Expect = 1e-17
 Identities = 62/234 (26%), Positives = 114/234 (48%), Gaps = 19/234 (8%)

Query: 369 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 428
           N+ FS        + ++ ++    G+ +A+ G +GSGK++++ LI    +P+ G      
Sbjct: 39  NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEG------ 92

Query: 429 VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEV--EAAASAANAHSFI 486
             IK         +I   +Q   +   TI ENI++G    +  E   ++   A      I
Sbjct: 93  -KIKH------SGRISFSSQFSWIMPGTIKENIIFG---VSYDEYRYKSVVKACQLEEDI 142

Query: 487 TLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEA 545
           T  P   +T +GE G+ LSGGQ+ RI++ARA+ K+  + LLD     LD  +E  I +  
Sbjct: 143 TKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESC 202

Query: 546 LDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI 599
           + +LM  +T ++V  ++  ++  D + ++ +G     GT  EL +    ++S +
Sbjct: 203 VCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKL 256

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 82.2 bits (204), Expect = 1e-17
 Identities = 50/187 (26%), Positives = 92/187 (49%), Gaps = 41/187 (21%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALI--ERFYDPTAGKVMIDGKDIRRLNLKSL 1084
            + K+ + + + G+  A++G SG+GKS+++  +   R     +G+V+I+G+ + +   +S 
Sbjct: 24   LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSF 80

Query: 1085 RLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVG 1143
            R  IG V Q+  L    ++ + + +               AA + G              
Sbjct: 81   RKIIGYVPQDDILHPTLTVRETLMF---------------AAKLRG-------------- 111

Query: 1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTTVL 1202
                 LSGG+++R++IA  ++ NP++L LDE TS LD+ S   +   L RL   GRT + 
Sbjct: 112  -----LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIIC 166

Query: 1203 VAHRLST 1209
              H+ S+
Sbjct: 167  SIHQPSS 173

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 85.5 bits (212), Expect = 1e-17
 Identities = 73/240 (30%), Positives = 118/240 (49%), Gaps = 39/240 (16%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSS----VIALIERFYDPTAGKVMIDGKDIRRLNLKSL 1084
                LR+  G++  +VG SG GKS+    +I L++     T G+V   GKD+  +     
Sbjct: 38   DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK----ATDGEVAWLGKDLLGMKDDEW 93

Query: 1085 RLK---IGLVQQEPALFAAS------IFDNIA-----YGKEGATEAEVVEAARAANVHGF 1130
            R     I ++ Q+P    AS      I + IA     Y  +  +  EV +  +A  +   
Sbjct: 94   RAVRSDIQMIFQDPL---ASLNPRMTIGEIIAEPLRTYHPK-LSRQEVKDRVKAMMLK-- 147

Query: 1131 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD----AESECV 1186
            V  LPN     +     + SGGQ QRI IARA++  P +++ DE  SALD    A+   +
Sbjct: 148  VGLLPNL----INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNL 203

Query: 1187 LQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 1245
            LQ+ L+R M G + + +AH L+ ++ + D + V+  G  VE G++ E+   P   Y++ L
Sbjct: 204  LQQ-LQREM-GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKAL 261

Length = 331

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 84.1 bits (209), Expect = 1e-17
 Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 44/246 (17%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E +N++     R    +  D S+    G+ VA++G +G+GKST++  +     P++G V
Sbjct: 3   LEARNLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPAL-FATTILENILYGK-------------PEATM 470
            L+   +       L  +  ++ Q  +L F  T+ E +  G+               A +
Sbjct: 60  RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAAL 119

Query: 471 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML------KNPKI 524
           A+V+ A  A   +                   QLSGG++QR+ +AR +         P+ 
Sbjct: 120 AQVDLAHLAGRDYP------------------QLSGGEQQRVQLARVLAQLWEPDGPPRW 161

Query: 525 LLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLS-TIRNVDTVAVIQQGQVVE 581
           LLLDE TSALD   +  V     +L    G   +VV H L+   R  D + ++ QG++V 
Sbjct: 162 LLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA 221

Query: 582 TGTHEE 587
            GT  E
Sbjct: 222 DGTPAE 227

Length = 258

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 83.4 bits (207), Expect = 1e-17
 Identities = 66/234 (28%), Positives = 110/234 (47%), Gaps = 28/234 (11%)

Query: 369 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 428
           N++  Y  R    +    S+    G+ V ++G +G+GK+T   +I     P++G +LLD 
Sbjct: 5   NLSKRYGKRK---VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDG 61

Query: 429 VDIKTLQL-RWLRDQIGLVNQEPALFAT-TILENIL-----YGKPEATMAEVEAAASAAN 481
            DI  L + +  R  IG + QE ++F   T+ ENIL      G  +    E         
Sbjct: 62  QDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE--------K 113

Query: 482 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS--- 538
               +       +     +   LSGG+++R+ IARA+  NPK LLLDE  + +D  +   
Sbjct: 114 LEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQD 171

Query: 539 -ESIVQEALDRLMVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELIA 590
            + I++   DR   G   ++  H +  T+   D   +I +G+V+  GT EE+ A
Sbjct: 172 IQKIIKILKDR---GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 83.4 bits (207), Expect = 1e-17
 Identities = 55/216 (25%), Positives = 108/216 (50%), Gaps = 9/216 (4%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL-KSLR 1085
            V    +L ++ G+   L+G +G+GK++   +I     P +GK+++DG+DI +L + K  R
Sbjct: 15   VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74

Query: 1086 LKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGE 1144
            L IG + QE ++F   ++ +NI    E    ++     +   +                 
Sbjct: 75   LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKS----- 129

Query: 1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVA 1204
            +   LSGG+++R+ IARA+  NP  LLLDE  + +D  +   +Q+ ++ L      VL+ 
Sbjct: 130  KASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLIT 189

Query: 1205 -HRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
             H +  T+   D   ++ +G+++ +G+  E+ +   
Sbjct: 190  DHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 84.4 bits (209), Expect = 1e-17
 Identities = 64/242 (26%), Positives = 116/242 (47%), Gaps = 36/242 (14%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           ++ + V+F+  +R    IF + S+  P GK  A++G SG GK+T++ LI     P+ G +
Sbjct: 8   VDMRGVSFTRGNRC---IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64

Query: 425 LLDNVDIKTL---QLRWLRDQIGLVNQEPALFA-TTILENILYGKPEAT----------- 469
           L D  +I  +   +L  +R ++ ++ Q  ALF    + +N+ Y   E T           
Sbjct: 65  LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV 124

Query: 470 MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 529
           M ++EA      A     L+P+           +LSGG  +R A+ARA+   P +++ DE
Sbjct: 125 MMKLEAVGLRGAAK----LMPS-----------ELSGGMARRAALARAIALEPDLIMFDE 169

Query: 530 ATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNVDTVAVIQQGQ-VVETGTHE 586
                D  +  ++ + +  L   +G T VVV+H +  + ++   A I   + +V  G+ +
Sbjct: 170 PFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQ 229

Query: 587 EL 588
            L
Sbjct: 230 AL 231

Length = 269

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 82.2 bits (204), Expect = 1e-17
 Identities = 63/223 (28%), Positives = 99/223 (44%), Gaps = 50/223 (22%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPTAGKVMIDGKDIRRLN 1080
               + K  NL I+ G+  AL+G +GSGKS+    I    + Y+ T G+++  G+DI   +
Sbjct: 12   GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK-YEVTEGEILFKGEDI--TD 68

Query: 1081 LKS---LRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA 1137
            L      RL I L  Q P                G   A+ +   R  N  GF       
Sbjct: 69   LPPEERARLGIFLAFQYPPEI------------PGVKNADFL---RYVNE-GF------- 105

Query: 1138 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR- 1196
                        SGG+K+R  I + +L  P + +LDE  S LD ++  ++ E + +L   
Sbjct: 106  ------------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE 153

Query: 1197 GRTTVLVAHR---LSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236
            G++ +++ H    L  I+  D + V+ DGRIV+ G   EL   
Sbjct: 154  GKSVLIITHYQRLLDYIKP-DRVHVLYDGRIVKSGD-KELALE 194

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 20/219 (9%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 1083
            D    +  + R+R G+   L+G +G+GK++ I ++     PT+G+  + G D+ R   + 
Sbjct: 12   DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPRE 70

Query: 1084 LRLKIGLVQQEPAL-FAASIFDNIA-----YGKEGATEAEVVEAARAANVHGFVSALPNA 1137
            +R +IG+V Q+ ++    + ++N+      YG  GA   E     R   +  FV  L  A
Sbjct: 71   VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RIDELLDFV-GLLEA 124

Query: 1138 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR- 1196
                V       SGG ++R+ IAR+++  P +L LDE T  LD ++   + E +E+L   
Sbjct: 125  ADRLVK----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE 180

Query: 1197 -GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSEL 1233
             G T +L  H +     + D + ++  GRI+ +G+  EL
Sbjct: 181  FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 61/235 (25%), Positives = 120/235 (51%), Gaps = 18/235 (7%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            I + +V  +Y ++    V  D +L I  G   +++G +G+GKS++++++ R     +G++
Sbjct: 2    ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGK----EGATEAEVVEAARA 1124
             IDG ++     K L  K+ +++QE  + +  ++ D + +G+    +G    E       
Sbjct: 59   TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118

Query: 1125 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 1184
            A  +  +  L + Y         +LSGGQ+QR  IA  + ++   +LLDE  + LD +  
Sbjct: 119  AIEYLHLEDLSDRYLD-------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171

Query: 1185 CVLQEALERLMR--GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSR 1236
              + + L RL    G+T V+V H ++      D I  +++G++V+QGS  E++  
Sbjct: 172  VQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226

Length = 252

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 83.3 bits (206), Expect = 2e-17
 Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 19/213 (8%)

Query: 384 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--PNA---GHVLLDNVDIKTLQLR- 437
           ++  +  P  +  A +G SG GKST++    R  D  P     G V     ++    +  
Sbjct: 27  KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86

Query: 438 -WLRDQIGLVNQEPALFATTILENILYGKP----EATMAE-VEAAASAANAHSFITLLPN 491
             +R +IG+V Q+P  F  +I +NI YG      +  M E VE +   A        L +
Sbjct: 87  VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQA-------ALWD 139

Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV 551
               ++ + G+ LSGGQ+QR+ IARA+   P+++L+DE  SALD  S   ++E +  L  
Sbjct: 140 EVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE 199

Query: 552 GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 584
             T ++V H +     V  +      ++ E G 
Sbjct: 200 QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGG 232

Length = 264

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 86.9 bits (216), Expect = 2e-17
 Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 50/223 (22%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            I L ++  AY  RP   + ++ +L +  G+   LVG +G+GKS+++ ++    +P +G+V
Sbjct: 4    ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG----------KEGATEAEV 1118
                            L++G + QEP L    ++ D +  G           E A     
Sbjct: 61   TRPKG-----------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109

Query: 1119 VEAARAANVHGFVSALPNAYK------------------TPVGERGVQLSGGQKQRIAIA 1160
                        +    + +                    PV      LSGG ++R+A+A
Sbjct: 110  DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSS----LSGGWRRRVALA 165

Query: 1161 RAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLV 1203
            RA+L+ P +LLLDE T+ LD ES   L++ L+R      TV+V
Sbjct: 166  RALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PGTVIV 205

Length = 530

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 53/192 (27%), Positives = 98/192 (51%), Gaps = 12/192 (6%)

Query: 1026 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 1085
                  +L I  G    ++G++G+GKS+++  I     PT+G+++IDG D+ + ++    
Sbjct: 20   RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRA 79

Query: 1086 LKIGLVQQEPALFAA---SIFDNIAY-----GKEGATEAEVVEAARAANVHGFVSALPNA 1137
              +  V Q+P    A   +I +N+A       K G + A  +   R ++    ++ L   
Sbjct: 80   NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLG 137

Query: 1138 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-- 1195
             +  + +R   LSGGQ+Q +++  A L  P ILLLDE T+ALD ++   + E   +++  
Sbjct: 138  LENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEE 197

Query: 1196 RGRTTVLVAHRL 1207
               TT++V H +
Sbjct: 198  HKLTTLMVTHNM 209

Length = 263

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 83.7 bits (207), Expect = 2e-17
 Identities = 68/243 (27%), Positives = 122/243 (50%), Gaps = 28/243 (11%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +++R V F   +R +  +F + +L +  G+  A++G SG GK++++ LI     P  G++
Sbjct: 8    VDMRGVSF---TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64

Query: 1070 MIDGKDI---RRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATE-------AEV 1118
            + DG++I    R  L ++R ++ ++ Q  ALF   ++FDN+AY     T+       + V
Sbjct: 65   LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTV 124

Query: 1119 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
            +    A  + G    +P+           +LSGG  +R A+ARA+   P +++ DE    
Sbjct: 125  MMKLEAVGLRGAAKLMPS-----------ELSGGMARRAALARAIALEPDLIMFDEPFVG 173

Query: 1179 LDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVS 1235
             D  +  VL + +  L    G T V+V+H +  +  + D   +V D +IV  GS   L +
Sbjct: 174  QDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233

Query: 1236 RPD 1238
             PD
Sbjct: 234  NPD 236

Length = 269

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 84.7 bits (210), Expect = 3e-17
 Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 19/205 (9%)

Query: 391 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN---VDI-KTLQLRWLRDQIGLV 446
           PA    A+ G SGSGK++++++I     P+ G + L+    VD  K + L   + +IG V
Sbjct: 22  PARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYV 81

Query: 447 NQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 505
            Q+  LF   T+  N+ YG  ++  A+ +           + LL  G    +      LS
Sbjct: 82  FQDARLFPHYTVRGNLRYGMWKSMRAQFDQL---------VALL--GIEHLLDRYPGTLS 130

Query: 506 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLS 563
           GG+KQR+AI RA+L  P++LL+DE  ++LD   +  +   L+RL   +    + V+H L 
Sbjct: 131 GGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLD 190

Query: 564 TI-RNVDTVAVIQQGQVVETGTHEE 587
            + R  D V V++ G+V  +G  EE
Sbjct: 191 EVLRLADRVVVLENGKVKASGPLEE 215

Length = 352

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score = 83.0 bits (205), Expect = 3e-17
 Identities = 58/229 (25%), Positives = 116/229 (50%), Gaps = 5/229 (2%)

Query: 1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            G++ ++ +   Y    + V+ ++ +  I  GQ   L+G +GSGKS++++   R  + T G
Sbjct: 1    GQMTVKDLTAKYTEGGNAVL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 58

Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI-AYGKEGATEAEVVEAARAAN 1126
             + IDG     + L+  R   G++ Q+  +F+ +   N+  YGK   ++ E+ + A    
Sbjct: 59   DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKW--SDEEIWKVAEEVG 116

Query: 1127 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 1186
            +   +   P      + + G  LS G KQ + +AR+VL    ILLLDE ++ LD  +  V
Sbjct: 117  LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176

Query: 1187 LQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 1235
            +++ L++     T +L  HR+  +       V+++ ++ +  S  +L++
Sbjct: 177  IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLN 225

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 81.9 bits (203), Expect = 4e-17
 Identities = 73/254 (28%), Positives = 122/254 (48%), Gaps = 46/254 (18%)

Query: 365 IEFKNVTFSY---PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 421
           ++  ++T+ Y   P R        F +    G+ VA++G SG+GKST+++LI  F  P +
Sbjct: 2   LKLTDITWLYHHLPMR--------FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS 53

Query: 422 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG-KP-----EATMAEVE 474
           G + L+  D  T      R  + ++ QE  LF+  T+ +NI  G  P      A   ++ 
Sbjct: 54  GSLTLNGQDHTTTPPS--RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLH 111

Query: 475 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
           A A        +  LP            QLSGGQ+QR+A+AR +++   ILLLDE  SAL
Sbjct: 112 AIARQMGIEDLLARLPG-----------QLSGGQRQRVALARCLVREQPILLLDEPFSAL 160

Query: 535 DAG---------SESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTH 585
           D           S+   +  L  LMV   ++  A R++  R++    V+  G++   G  
Sbjct: 161 DPALRQEMLTLVSQVCQERQLTLLMVSH-SLEDAARIAP-RSL----VVADGRIAWDGPT 214

Query: 586 EELIAKAGAYASLI 599
           +EL++   + ++L+
Sbjct: 215 DELLSGKASASALL 228

Length = 232

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 61/235 (25%), Positives = 121/235 (51%), Gaps = 22/235 (9%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           I  +NV+ SY ++    +  D S+  P G   +++G +G+GKST++S++ R    ++G +
Sbjct: 2   ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENIL------YGKPEATMAEVEAAAS 478
            +D +++ +   + L  ++ ++ QE  + +   + +++      Y +   T  E     +
Sbjct: 59  TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLT-KEDRRIIN 117

Query: 479 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD-AG 537
            A  +  +  L + Y         +LSGGQ+QR  IA  + ++   +LLDE  + LD   
Sbjct: 118 EAIEYLHLEDLSDRYLD-------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKH 170

Query: 538 SESIVQEALDRLM--VGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 589
           S  I++  L RL   +G+T VVV H ++      D +  ++ G+VV+ G+ +E+I
Sbjct: 171 SVQIMK-ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224

Length = 252

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 82.7 bits (204), Expect = 4e-17
 Identities = 71/250 (28%), Positives = 115/250 (46%), Gaps = 34/250 (13%)

Query: 1001 EPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIER 1060
            E V  +RGE     +   Y       V ++  + I  G   A++G +G GKS+++  + R
Sbjct: 3    ESVARLRGE----QLTLGYGKY---TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSR 55

Query: 1061 FYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGK--------- 1110
               P  G V +DG+ I+    K +  +IGL+ Q        ++ + +A G+         
Sbjct: 56   LMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTR 115

Query: 1111 -EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ-LSGGQKQRIAIARAVLKNPA 1168
                 E  V +A +A  +            T + ++ V  LSGGQ+QR  IA  + +  A
Sbjct: 116  WRKEDEEAVTKAMQATGI------------THLADQSVDTLSGGQRQRAWIAMVLAQETA 163

Query: 1169 ILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLS-TIRGVDCIGVVQDGRIV 1225
            I+LLDE T+ LD   +  L E L  L R  G T   V H L+   R    +  +++G+IV
Sbjct: 164  IMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223

Query: 1226 EQGSHSELVS 1235
             QG+  E+V+
Sbjct: 224  AQGAPKEIVT 233

Length = 265

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 82.0 bits (203), Expect = 5e-17
 Identities = 58/243 (23%), Positives = 111/243 (45%), Gaps = 33/243 (13%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           I  +N+++S   R    +    S+    G+ +A++G +G+GKST++  +     P++G V
Sbjct: 2   IRAENLSYSLAGRR---LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPAL-FATTILENILYG--------KPEATMAEVEA 475
            L+ V + +     L     ++ Q  +L F  T+ E +  G        +PE        
Sbjct: 59  TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118

Query: 476 AASAANAHSFITLLPNGYSTQVGERGVQ-LSGGQKQRIAIARAMLK------NPKILLLD 528
           A +A +                  R  + LSGG++QR+ +AR + +      + + L LD
Sbjct: 119 ALAATDLSGL------------AGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLD 166

Query: 529 EATSALD-AGSESIVQEALDRLMVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHE 586
           E TSALD A     ++ A      G   + V H L+   +  D + ++ QG+V+ +G+ +
Sbjct: 167 EPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226

Query: 587 ELI 589
           +++
Sbjct: 227 DVL 229

Length = 259

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 85.4 bits (212), Expect = 7e-17
 Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 26/233 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +EF+NV+  Y      ++ +D S     G  +A+VG +G+GKST++ L+     P +G V
Sbjct: 322 LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379

Query: 425 LLDNVDIKTLQLRWLR-DQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAH 483
            +     +T+++ +    +  L   +      T+LE +  G P+    EV A        
Sbjct: 380 KVG----ETVKIGYFDQHRDELDPDK------TVLEELSEGFPDGDEQEVRAYL-----G 424

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
            F             +    LSGG+K R+ +A+ +L+ P +LLLDE T+ LD  S   ++
Sbjct: 425 RF--GFT---GEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALE 479

Query: 544 EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET-GTHEELIAKAGAY 595
           EAL     G T ++V+H    +  V T   + + +V E  G +E+ + +    
Sbjct: 480 EALLDFE-G-TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLEQKKER 530

Length = 530

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 82.4 bits (203), Expect = 7e-17
 Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 22/243 (9%)

Query: 1008 GEIELRHVDFAYPSRPDVVVFKDFN---LRIRAGQSQALVGASGSGKSSVIALIERFYDP 1064
             +I L +V + Y ++     FK  N   L  +  +   ++G +GSGKS++I L       
Sbjct: 5    KDIILDNVSYTY-AKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63

Query: 1065 TAGKVMIDG----KDIRRLN-LKSLRLKIGLVQQEP--ALFAASIFDNIAYG--KEGATE 1115
              G+ ++       +++++  +K LR +IGLV Q P   LF  +I  +IA+G    G  +
Sbjct: 64   ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123

Query: 1116 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 1175
             E  +  +   +   V  LP  Y   V     +LSGGQK+R+A+A  +  +   L+LDE 
Sbjct: 124  QEAYK--KVPELLKLVQ-LPEDY---VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177

Query: 1176 TSALDAESECVLQEALERLMR--GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSE 1232
            T  LD + E       ERL +   +  ++V H +  + R  D + V+ +G+++  GS  E
Sbjct: 178  TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237

Query: 1233 LVS 1235
            + S
Sbjct: 238  IFS 240

Length = 289

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 84.1 bits (208), Expect = 7e-17
 Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 24/230 (10%)

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
               D  V    +L +R G    LVG +G+GK++++  I     PTAG V++ G D+  L+
Sbjct: 12   EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71

Query: 1081 LKSLRLKIGLVQQEPAL-FAASIFDNIAYGK-------EGATEAE---VVEAARAANVHG 1129
             ++   ++  V Q+ +L F   +   +  G+       +  TE +   V  A     V  
Sbjct: 72   ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ 131

Query: 1130 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 1189
            F          PV      LSGG++QR+ +ARA+ +   +LLLDE T++LD   +    E
Sbjct: 132  FAD-------RPVTS----LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLE 180

Query: 1190 ALERLMR-GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
             + RL+  G+T V   H L    R  D + ++ DGR+   G  +++++  
Sbjct: 181  LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTAD 230

Length = 402

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 81.1 bits (201), Expect = 8e-17
 Identities = 67/228 (29%), Positives = 101/228 (44%), Gaps = 34/228 (14%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPTAGKVMIDGKDIRRLNLK--- 1082
            K  NL ++ G+  A++G +GSGKS+    I    + Y+ T G+++ DG+DI  L L    
Sbjct: 21   KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDI--LELSPDE 77

Query: 1083 SLRLKIGLVQQEPALFA---ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYK 1139
              R  I L  Q P        S F   A          + E         F+  L    +
Sbjct: 78   RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPE---------FIKELKEKAE 128

Query: 1140 TPVG------ERGVQ--LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEAL 1191
              +G      ER V    SGG+K+R  I + +L  P + +LDE  S LD ++  ++ E +
Sbjct: 129  L-LGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGI 187

Query: 1192 ERLM-RGRTTVLVAH--RLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236
              L   GR  +++ H  RL      D + V+ DGRIV+ G   EL   
Sbjct: 188  NALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGD-PELAEE 234

Length = 251

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 81.1 bits (201), Expect = 9e-17
 Identities = 63/217 (29%), Positives = 93/217 (42%), Gaps = 23/217 (10%)

Query: 382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF--YDPNAGHVLLDNVDIKTLQL--R 437
           I +  ++    G+  A++G +GSGKST+   I     Y+   G +L D  DI  L    R
Sbjct: 19  ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78

Query: 438 WLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPN-----G 492
             R  I L  Q P         + L              A       FI  L       G
Sbjct: 79  -ARAGIFLAFQYPVEIPGVTNSDFL-----RAAMNARRGARGILPE-FIKELKEKAELLG 131

Query: 493 YSTQVGERGVQ--LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM 550
              +  ER V    SGG+K+R  I + +L  PK+ +LDE  S LD  +  IV E ++ L 
Sbjct: 132 LDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR 191

Query: 551 -VGRTTVVVAHR---LSTIRNVDTVAVIQQGQVVETG 583
             GR  +++ H    L  I+  D V V+  G++V++G
Sbjct: 192 EEGRGVLIITHYQRLLDYIK-PDKVHVLYDGRIVKSG 227

Length = 251

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 80.7 bits (200), Expect = 1e-16
 Identities = 66/247 (26%), Positives = 101/247 (40%), Gaps = 48/247 (19%)

Query: 1019 YPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR 1078
                 +    KD +  I  G+   ++G +G+GKS+++ LI   Y PT+GKV + GK +  
Sbjct: 34   GRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-VA- 91

Query: 1079 LNLKSLRLKIGLVQQEPALFAASI-FDNIAYGKE---------GATEAEVVEAARAANVH 1128
                              L      FD    G+E         G T  E+ E  +   + 
Sbjct: 92   -----------------PLIELGAGFDPELTGRENIYLRGLILGLTRKEIDE--KVDEII 132

Query: 1129 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 1188
             F + L +    PV       S G   R+A + A    P ILLLDE  +  DA      +
Sbjct: 133  EF-AELGDFIDQPVK----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAA---FQE 184

Query: 1189 EALERLM----RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSR 1243
            + LERL     + +T VLV+H L  I+   D    ++ G+I  +GS  E++     AY  
Sbjct: 185  KCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI----PAYEE 240

Query: 1244 LLQLQHH 1250
             L  +  
Sbjct: 241  DLADRLS 247

Length = 249

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 81.4 bits (201), Expect = 1e-16
 Identities = 55/210 (26%), Positives = 108/210 (51%), Gaps = 19/210 (9%)

Query: 392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPA 451
            G+T+A++G +GSGKST+  ++    +P +G +L+++  +      +   +I ++ Q+P 
Sbjct: 38  EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPN 97

Query: 452 ------LFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS 505
                 L    IL+  L  +    +   +           + LLP+  +         L+
Sbjct: 98  TSLNPRLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH----MLA 151

Query: 506 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSES----IVQEALDRLMVGRTTVVVAHR 561
            GQKQR+A+ARA++  PKI++ DEA ++LD    S    ++ E  ++   G + + V   
Sbjct: 152 PGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQ--GISYIYVTQH 209

Query: 562 LSTIRNV-DTVAVIQQGQVVETGTHEELIA 590
           +  I+++ D V V+ +G+VVE G+  +++A
Sbjct: 210 IGMIKHISDQVLVMHEGEVVERGSTADVLA 239

Length = 267

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 83.0 bits (206), Expect = 1e-16
 Identities = 79/255 (30%), Positives = 122/255 (47%), Gaps = 59/255 (23%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV---IALIERFYDPTA 1066
            ++L+ V  +Y  +  V+  K  +L +  G+   LVG SG GKS++   +A +ER    T+
Sbjct: 4    LKLQAVRKSYDGKTQVI--KGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI---TS 58

Query: 1067 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG------KEGATEAEVV 1119
            G++ I G+ +  L     R  I +V Q  AL+   S+ +N+AYG       +   E  V 
Sbjct: 59   GEIWIGGRVVNELEPAD-R-DIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVA 116

Query: 1120 EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 1179
            EAAR   +   +   P            +LSGGQ+QR+A+ RA+++ PA+ L DE  S L
Sbjct: 117  EAARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNL 165

Query: 1180 DAESECVL--QEALE--RLMR--GRTTVLV----------AHRLSTIRGVDCIGVVQDGR 1223
            DA+    L  Q  LE  RL R    T++ V          A R+          VV +G 
Sbjct: 166  DAK----LRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRV----------VVMNGG 211

Query: 1224 IVEQ-GSHSELVSRP 1237
            + EQ G+  E+  +P
Sbjct: 212  VAEQIGTPVEVYEKP 226

Length = 356

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 82.6 bits (204), Expect = 1e-16
 Identities = 65/229 (28%), Positives = 115/229 (50%), Gaps = 14/229 (6%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           I+   V+ SY  +    +    S    +G+   ++G +G+GKST+  +I     P+AG +
Sbjct: 42  IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPAL-FATTILENIL-YGKPEATMAEVEAAASAANA 482
            +  V +   + R  R +IG+V Q   L    T+ EN+L +G+    M+  E  A   + 
Sbjct: 99  TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGR-YFGMSTREIEAVIPSL 156

Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
             F  L      ++   R   LSGG K+R+ +ARA++ +P++L+LDE T+ LD  +  ++
Sbjct: 157 LEFARL-----ESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 211

Query: 543 QEALDRLMV-GRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELI 589
            E L  L+  G+T ++  H +    R  D + V++ G+ +  G    LI
Sbjct: 212 WERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260

Length = 340

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 81.8 bits (202), Expect = 2e-16
 Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 32/238 (13%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            I+L  V  +Y  +    V    +  + +G+   L+G +G+GKS++  +I     P AGK+
Sbjct: 42   IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDN-----------IAYGKEGATEAEV 1118
             + G  +     +  R +IG+V Q         FDN           + +G+        
Sbjct: 99   TVLGVPVPA-RARLARARIGVVPQ---------FDNLDLEFTVRENLLVFGRYFGMSTRE 148

Query: 1119 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
            +EA   + +    + L +     V +    LSGG K+R+ +ARA++ +P +L+LDE T+ 
Sbjct: 149  IEAVIPSLLE--FARLESKADARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTG 202

Query: 1179 LDAESECVLQEALERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELV 1234
            LD  +  ++ E L  L+ RG+T +L  H +    R  D + V++ GR + +G    L+
Sbjct: 203  LDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260

Length = 340

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 62/230 (26%), Positives = 99/230 (43%), Gaps = 46/230 (20%)

Query: 383 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL------ 436
            RD S     G+ + +VG SGSGKST++  +     P+ G           L+L      
Sbjct: 19  CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78

Query: 437 ---RWLRDQIGLVNQEPA-------LFATTILENIL------YGKPEAT----MAEVEAA 476
              R +R + G V+Q P             I E ++      YG   AT    + EVE  
Sbjct: 79  ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEID 138

Query: 477 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
                             T++ +     SGG +QR+ IAR ++  P+++ +DE T  LD 
Sbjct: 139 P-----------------TRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 181

Query: 537 GSESIVQEALDRLMV--GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 583
             ++ + + L  L+   G   ++V H L   R +   + V+QQG+VVE+G
Sbjct: 182 SVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 79.9 bits (197), Expect = 2e-16
 Identities = 67/246 (27%), Positives = 101/246 (41%), Gaps = 44/246 (17%)

Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL--- 1084
             +D +  +  G+   +VG SGSGKS+++  +     P  G      +    L L  L   
Sbjct: 19   CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78

Query: 1085 ------RLKIGLVQQEPA---LFAASIFDNIA----------YGKEGATEA---EVVEAA 1122
                  R + G V Q P        S   NI           YG   AT     E VE  
Sbjct: 79   ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEID 138

Query: 1123 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 1182
                    +  LP A+           SGG +QR+ IAR ++  P ++ +DE T  LD  
Sbjct: 139  PTR-----IDDLPRAF-----------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 182

Query: 1183 SECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDG 1239
             +  L + L  L+R  G   ++V H L   R +   + V+Q GR+VE G   +++  P  
Sbjct: 183  VQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQH 242

Query: 1240 AYSRLL 1245
             Y++LL
Sbjct: 243  PYTQLL 248

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 71/245 (28%), Positives = 113/245 (46%), Gaps = 35/245 (14%)

Query: 1022 RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN- 1080
                 V  + +L +++G++ AL+G SG GKS++  L+     P+ G V   G+ + +LN 
Sbjct: 22   HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81

Query: 1081 --LKSLRLKIGLVQQEPALFAA-----SIFDNIAYGKEGATEAEVVEAARAANVHGFVSA 1133
               K+ R  I +V Q+    +A     ++ + I          +  +A R A      S 
Sbjct: 82   AQRKAFRRDIQMVFQDS--ISAVNPRKTVREIIREPLRHLLSLD--KAERLARA----SE 133

Query: 1134 LPNAYKTPVG---ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ-- 1188
            +  A         +R  QLSGGQ QR+ +ARA+   P +L+LDEA S LD     VLQ  
Sbjct: 134  MLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL----VLQAG 189

Query: 1189 --EALERLMRGRTT--VLVAHRLSTI-RGVDCIGVVQDGRIVEQG--SHSELVSRPDGAY 1241
                L++L +   T  + + H L  + R    + V+ +G+IVE          S P G  
Sbjct: 190  VIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLTFSSPAG-- 247

Query: 1242 SRLLQ 1246
             R+LQ
Sbjct: 248  -RVLQ 251

Length = 268

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 83.5 bits (207), Expect = 3e-16
 Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 20/206 (9%)

Query: 1003 VETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY 1062
             +     I L ++    P      +  + N  +R G+   + G SG+GK+S++  +   +
Sbjct: 386  DDNADHGITLENLSLRTPDGQ--TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW 443

Query: 1063 DPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAY--GKEGATEAEVVE 1120
               +G++          +   L      + Q P L   ++ + + Y       ++AE+V 
Sbjct: 444  PWGSGRI------SMPADSALL-----FLPQRPYLPQGTLREALCYPNAAPDFSDAELVA 492

Query: 1121 AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 1180
                  +      L              LSGG++QR+A AR +L  P  + LDEATSALD
Sbjct: 493  VLHKVGLGDLAERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547

Query: 1181 AESECVLQEALERLMRGRTTVLVAHR 1206
             E+E  L + L+  +   T + V HR
Sbjct: 548  EETEDRLYQLLKEELPDATVISVGHR 573

Length = 604

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 80.4 bits (198), Expect = 3e-16
 Identities = 65/238 (27%), Positives = 113/238 (47%), Gaps = 32/238 (13%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            I+L  V  +Y    D VV  D +  I  G+   L+G +G+GKS++  ++     P  GK+
Sbjct: 5    IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI-----------AYGKEGATEAEV 1118
             + G+ +     +  R+ IG+V Q         FDN+            +G+        
Sbjct: 62   TVLGEPVPS-RARLARVAIGVVPQ---------FDNLDPEFTVRENLLVFGRYFGMSTRE 111

Query: 1119 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
            +EA   + +    + L +     V      LSGG K+R+ +ARA++ +P +L+LDE T+ 
Sbjct: 112  IEAVIPSLLE--FARLESKADVRVA----LLSGGMKRRLTLARALINDPQLLILDEPTTG 165

Query: 1179 LDAESECVLQEALERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELV 1234
            LD  +  ++ E L  L+ RG+T +L  H +    R  D + V++ GR + +G    L+
Sbjct: 166  LDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI 223

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 79.7 bits (197), Expect = 4e-16
 Identities = 65/213 (30%), Positives = 103/213 (48%), Gaps = 14/213 (6%)

Query: 382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRW 438
           +  + S+   +G+TVA++G SG GKST+  L+     P+ G+V      +  L   Q + 
Sbjct: 27  VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKA 86

Query: 439 LRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAANAHSFITL--LPNGYS 494
            R  I +V Q+   A+     +  I+  +P   +  ++ A   A A   +    L +   
Sbjct: 87  FRRDIQMVFQDSISAVNPRKTVREII-REPLRHLLSLDKAERLARASEMLRAVDLDDSVL 145

Query: 495 TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VG 552
            +   R  QLSGGQ QR+ +ARA+   PK+L+LDEA S LD   ++ V   L +L    G
Sbjct: 146 DK---RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFG 202

Query: 553 RTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGT 584
              + + H L  + R    V V+  GQ+VET  
Sbjct: 203 TACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235

Length = 268

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 78.0 bits (193), Expect = 4e-16
 Identities = 53/180 (29%), Positives = 88/180 (48%), Gaps = 21/180 (11%)

Query: 1022 RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 1081
            R   V+F   +  + AG++  L G +GSGK++++ LI     P AG + +DG DI   ++
Sbjct: 12   RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDV 71

Query: 1082 KSLRLKIG-LVQQEPALFAASIFDNIAYGKE--GATEAEVVEAARAANVHGFVSALPNAY 1138
                  +G     +PAL   ++ +N+ +     G  E ++  A  A  +   ++ LP  Y
Sbjct: 72   AEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEELDIAAALEAVGLAP-LAHLPFGY 127

Query: 1139 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR 1198
                      LS GQK+R+A+AR ++ N  I +LDE T+ALDA +          L+R  
Sbjct: 128  ----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAA----VALFAELIRAH 173

Length = 207

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 80.0 bits (197), Expect = 5e-16
 Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 12/228 (5%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           I+   V+ SY    D ++  D S     G+   ++G +G+GKST+  ++     P+ G +
Sbjct: 5   IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPAL-FATTILENILYGKPEATMAEVEAAASAANAH 483
            +    + + + R  R  IG+V Q   L    T+ EN+L       M+  E  A   +  
Sbjct: 62  TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLL 120

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
            F  L      ++   R   LSGG K+R+ +ARA++ +P++L+LDE T+ LD  +  ++ 
Sbjct: 121 EFARL-----ESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 175

Query: 544 EALDRLMV-GRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELI 589
           E L  L+  G+T ++  H +    R  D + V++ G+ +  G    LI
Sbjct: 176 ERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI 223

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 79.2 bits (196), Expect = 5e-16
 Identities = 71/249 (28%), Positives = 108/249 (43%), Gaps = 57/249 (22%)

Query: 368 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 427
           + +T  Y  R      RD S     G+ + +VG SGSGK+T+++ +     P+AG V   
Sbjct: 10  RGLTKLYGPR---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYR 66

Query: 428 N-----VDIKTL---QLRWL-RDQIGLVNQEPA---LFATTILENI----------LYGK 465
                  D+  L   + R L R + G V+Q P        +   NI           YG 
Sbjct: 67  MRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGD 126

Query: 466 PEAT----MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 521
             AT    +  VE  A+       I  LP  +S           GG +QR+ IAR ++ +
Sbjct: 127 IRATAGDWLERVEIDAAR------IDDLPTTFS-----------GGMQQRLQIARNLVTH 169

Query: 522 PKILLLDEATSALDAGSESIVQEALDRLMVGRTT------VVVAHRLSTIRNV-DTVAVI 574
           P+++ +DE T  LD      VQ  L  L+ G         V+V H L+  R +   + V+
Sbjct: 170 PRLVFMDEPTGGLDVS----VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVM 225

Query: 575 QQGQVVETG 583
           +QG+VVE+G
Sbjct: 226 KQGRVVESG 234

Length = 258

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 78.0 bits (192), Expect = 6e-16
 Identities = 61/182 (33%), Positives = 95/182 (52%), Gaps = 18/182 (9%)

Query: 393 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLRDQIGLVNQE 449
           G+   + G SG+GKST++ LI     P+AG +     DI  L+ R   +LR QIG++ Q+
Sbjct: 28  GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD 87

Query: 450 PALFAT-TILENILYGKPEATMAEVEAAASAANAHSFIT--LLPNGYSTQVGERGVQLSG 506
             L    T+ +N+        +  + A AS  +    ++  L   G   +     +QLSG
Sbjct: 88  HHLLMDRTVYDNV-------AIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSG 140

Query: 507 GQKQRIAIARAMLKNPKILLLDEATSALD-AGSESIVQ--EALDRLMVGRTTVVVAHRLS 563
           G++QR+ IARA++  P +LL DE T  LD A SE I++  E  +R  VG T ++  H + 
Sbjct: 141 GEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR--VGVTVLMATHDIG 198

Query: 564 TI 565
            I
Sbjct: 199 LI 200

Length = 222

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 78.0 bits (192), Expect = 6e-16
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 15/173 (8%)

Query: 368 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN---AGHV 424
           KNV+   P      +  + +     G+ V ++G SG GKST++S +           G +
Sbjct: 6   KNVSLRLPGS---CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGEL 62

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAH 483
            L+   +  L     + QIG++ Q+  LF   ++ +N+L+  P        A  +AANA 
Sbjct: 63  WLNEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNLLFALPATLKGN--ARRNAANA- 117

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
               L  +G      +    LSGGQ+ R+A+ RA+L  PK LLLDE  S LD 
Sbjct: 118 ---ALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167

Length = 213

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 78.2 bits (193), Expect = 6e-16
 Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 33/195 (16%)

Query: 382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL----DNVDI------ 431
           + ++ S+   AG+ VA+ G SG+GKST++  +   Y P++G +L+      VD+      
Sbjct: 23  VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82

Query: 432 KTLQLRWLRDQIGLVNQ----EPALFATTILENILYGKPEATMAEVEAAASAANAHSFIT 487
           + L++R  R  IG V+Q     P + A  ++      +P      V   A+ A A   + 
Sbjct: 83  EVLEVR--RKTIGYVSQFLRVIPRVSALEVVA-----EPLLERG-VPREAARARARELLA 134

Query: 488 LLPNGYSTQVGERGVQL-----SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
            L       + ER   L     SGG++QR+ IAR  + +  ILLLDE T++LDA +  +V
Sbjct: 135 RL------NIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVV 188

Query: 543 QEALDRLMVGRTTVV 557
            E +         ++
Sbjct: 189 VELIAEAKARGAALI 203

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 82.0 bits (203), Expect = 7e-16
 Identities = 62/222 (27%), Positives = 115/222 (51%), Gaps = 34/222 (15%)

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL------QLRW 438
           DF++   AG+  A++GG+G+GKST++ +I     P++G + +       L      QL  
Sbjct: 31  DFTLH--AGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL-- 86

Query: 439 LRDQIGLVNQEPALFAT-TILENILYG--KPEATMAEVEAAASAANAHSFITLLPNGYST 495
               I LV QEP LF   ++ ENIL+G  K +A+M +++   +A      + L  +  S 
Sbjct: 87  ---GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ--LDLDSSAGSL 141

Query: 496 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQEALDRLMVGRT 554
           +V +R         Q + I R ++++ +IL+LDE T++L    +E +     + L  G  
Sbjct: 142 EVADR---------QIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVG 192

Query: 555 TVVVAHRLSTIRNV-DTVAVIQQGQVVETG-----THEELIA 590
            V ++H+L  IR + D ++V++ G +  +G     + +++I 
Sbjct: 193 IVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDIIQ 234

Length = 510

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 82.1 bits (203), Expect = 7e-16
 Identities = 73/239 (30%), Positives = 113/239 (47%), Gaps = 52/239 (21%)

Query: 385 DFSIFFPAGKTVAVVGGSGSGKS-TVVSLIERFYDPN----------AGHVLLDNVDIKT 433
           D S+   AG+T+A+VG SGSGKS T +S++     P            G  LL +   +T
Sbjct: 27  DVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL-HASEQT 85

Query: 434 LQLRWLR-DQIGLVNQEPALFATTILENILYGKPEATMAEV---------EAAASAANAH 483
           L  R +R ++I ++ QEP + +   L  +     E  + EV         EAA       
Sbjct: 86  L--RGVRGNKIAMIFQEP-MVSLNPLHTL-----EKQLYEVLSLHRGMRREAARGEI--- 134

Query: 484 SFITLLPNGYSTQVGERGV---------QLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
             +  L      +VG R           QLSGG++QR+ IA A+L  P++L+ DE T+AL
Sbjct: 135 --LNCL-----DRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTAL 187

Query: 535 DAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 590
           D   ++ + + L  L   +    + + H LS +R + D VAV+Q G+ VE      L +
Sbjct: 188 DVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFS 246

Length = 529

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 77.9 bits (192), Expect = 7e-16
 Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 20/193 (10%)

Query: 382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW--- 438
           +  + S     G+ +A+VG SGSGKST++ L+     P +G V+ +   +  L       
Sbjct: 24  VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83

Query: 439 LRDQ-IGLVNQEPALFAT-TILENI----LYGKPEATMAEVEAAASAANAHSFITLLPNG 492
           LR+Q +G + Q   L    T LEN+    L GK            +  N+ +   L   G
Sbjct: 84  LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK---------KKPAEINSRALEMLAAVG 134

Query: 493 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG 552
              +   R  +LSGG++QR+AIARA++ NP+++L DE T  LDA +   + + L  L   
Sbjct: 135 LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL 194

Query: 553 RTT--VVVAHRLS 563
           + T  +VV H L 
Sbjct: 195 QGTAFLVVTHDLQ 207

Length = 233

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 27/227 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           ++  ++T +Y  +  +    D S+    G+    +G +G+GK+T + +I     P++G +
Sbjct: 1   LKTNDLTKTYGKKRVL---DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENI-----LYGKPEATMAEVEAAAS 478
             D    +       R  IG + + P  +   T  EN+     L G  +  + EV     
Sbjct: 58  TFDGKSYQKNIEALRR--IGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEV----- 110

Query: 479 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 538
                    L   G      ++    S G KQR+ IA A+L NP +L+LDE T+ LD   
Sbjct: 111 ---------LDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161

Query: 539 ESIVQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 583
              ++E +  L   G T ++ +H LS I+ V D + +I +G+++E G
Sbjct: 162 IKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 56/240 (23%), Positives = 102/240 (42%), Gaps = 36/240 (15%)

Query: 364 NIEFKNVTFSYPS-RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA- 421
            + + +V     +      I  D S+   +G+ +A++G SGSGK+T++  I    +    
Sbjct: 3   VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT 62

Query: 422 --GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILY-----------GKPE 467
             G +L +    K  Q +     +  V Q+  L    T+ E + Y               
Sbjct: 63  TSGQILFNGQPRKPDQFQ---KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIR 119

Query: 468 ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQ-LSGGQKQRIAIARAMLKNPKILL 526
               E       A              T++G   V+ +SGG+++R++IA  +L +PK+L+
Sbjct: 120 KKRVEDVLLRDLAL-------------TRIGGNLVKGISGGERRRVSIAVQLLWDPKVLI 166

Query: 527 LDEATSALDAGSESIVQEALDRLMVGRTTVVVA-H--RLSTIRNVDTVAVIQQGQVVETG 583
           LDE TS LD+ +   +   L +L      V++  H  R    R  D + ++  G++V +G
Sbjct: 167 LDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 67/234 (28%), Positives = 114/234 (48%), Gaps = 25/234 (10%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE +N+   Y    D    R  S     G+   ++G +G+GK+T + ++     P +G  
Sbjct: 1   IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA 57

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPAL-FATTILENI-----LYGKPEATMAEVEAAAS 478
            +   D+   + R +R +IG+V Q+ ++    T  EN+     LYG P A     E    
Sbjct: 58  TVAGHDV-VREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-----ERRER 111

Query: 479 AANAHSFITLLPNGYSTQVGERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
                 F+ LL      +  +R V+  SGG ++R+ IAR+++  P++L LDE T  LD  
Sbjct: 112 IDELLDFVGLL------EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQ 165

Query: 538 SESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
           + + V E +++L    G T ++  H +     + D VA+I  G+++  GT EEL
Sbjct: 166 TRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 76.4 bits (188), Expect = 2e-15
 Identities = 57/218 (26%), Positives = 89/218 (40%), Gaps = 40/218 (18%)

Query: 1030 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT---AGKVMIDGKDIRRLNLKSLRL 1086
            + N  I  G+   L+G SG GKS++++ +           G++ ++ + +    L + + 
Sbjct: 20   NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD--MLPAAQR 77

Query: 1087 KIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGER 1145
            +IG++ Q+  LF   S+  N+ +    A  A +   AR            NA     G  
Sbjct: 78   QIGILFQDALLFPHLSVGQNLLF----ALPATLKGNARRNAA--------NAALERSGLD 125

Query: 1146 GV------QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE-----SECVLQEALERL 1194
            G        LSGGQ+ R+A+ RA+L  P  LLLDE  S LD        + V  E     
Sbjct: 126  GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRA-- 183

Query: 1195 MRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 1232
              G  TV V H        D   V    R++E     +
Sbjct: 184  -AGIPTVQVTH--------DLQDVPAGSRVIEMAQWEQ 212

Length = 213

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 77.4 bits (190), Expect = 2e-15
 Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 16/228 (7%)

Query: 372 FSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN--V 429
           F Y   P   + +  ++ F       +VG +G GKST+   +     P  G VL     +
Sbjct: 9   FRYQDEP---VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65

Query: 430 DIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAASAANAHSFIT 487
           D     L  LR Q+  V Q+P   +F T I  +I +      + E E       A + + 
Sbjct: 66  DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVD 125

Query: 488 LLPNGYSTQVGERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL 546
                 +     + +Q LS GQK+R+AIA A++   + LLLDE T+ LD    + +   +
Sbjct: 126 ------AQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAII 179

Query: 547 DRLMV-GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKA 592
            R++  G   ++ +H +  I  + D V V++QGQ++  G   E+ A  
Sbjct: 180 RRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACT 227

Length = 271

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 75.3 bits (186), Expect = 3e-15
 Identities = 59/223 (26%), Positives = 93/223 (41%), Gaps = 49/223 (21%)

Query: 382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF--YDPNAGHVLLDNVDIKTL--QLR 437
           I +  ++    G+  A++G +GSGKST+   I     Y+   G +L    DI  L  + R
Sbjct: 15  ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74

Query: 438 WLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV 497
             R  I L  Q P               P    A+            F+           
Sbjct: 75  -ARLGIFLAFQYPPEI------------PGVKNAD------------FL----------- 98

Query: 498 GERGVQ--LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRT 554
             R V    SGG+K+R  I + +L  P + +LDE  S LD  +  +V E +++L   G++
Sbjct: 99  --RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156

Query: 555 TVVVAH--RLSTIRNVDTVAVIQQGQVVETGTHE--ELIAKAG 593
            +++ H  RL      D V V+  G++V++G  E    I K G
Sbjct: 157 VLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALEIEKKG 199

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 77.8 bits (192), Expect = 3e-15
 Identities = 67/259 (25%), Positives = 121/259 (46%), Gaps = 43/259 (16%)

Query: 365 IEFKNVTFSYPSR-PDVI-IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 422
           I+ KN+   +  + P  +    + S+    G+ +A++G +GSGK+T +  +     P+ G
Sbjct: 3   IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62

Query: 423 HVLLDNVDIKTL------------------------QLRWLRDQIGLVNQ--EPALFATT 456
            +     D K                          +++ +R ++G+V Q  E  LF  T
Sbjct: 63  TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122

Query: 457 ILENILYGKPEATMAEVEAAASAANAHSFITL--LPNGYSTQVGERG-VQLSGGQKQRIA 513
           I ++I++G     +++ EA   AA    +I L  L   Y     +R   +LSGGQK+R+A
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAK---YIELVGLDESYL----QRSPFELSGGQKRRVA 175

Query: 514 IARAMLKNPKILLLDEATSALD-AGSESIVQEALDRL-MVGRTTVVVAHRL-STIRNVDT 570
           +A  +   P  L+ DE T+ LD  G + I+ E  D L   G+T ++V H L + +     
Sbjct: 176 LAGILAMEPDFLVFDEPTAGLDPQGVKEIL-EIFDNLNKQGKTIILVTHDLDNVLEWTKR 234

Query: 571 VAVIQQGQVVETG-THEEL 588
               + G++++ G T++ L
Sbjct: 235 TIFFKDGKIIKDGDTYDIL 253

Length = 305

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 79.8 bits (197), Expect = 3e-15
 Identities = 64/267 (23%), Positives = 119/267 (44%), Gaps = 48/267 (17%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF--YDPNAG 422
           IE KN+T  +       + ++ S     G+ + ++G SG+GKS ++ ++     Y+P +G
Sbjct: 1   IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57

Query: 423 HVL---------------------------------LDNVDIKTLQLRWLRDQIGLVNQE 449
            ++                                 +D  ++     R +R +I ++ Q 
Sbjct: 58  RIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQR 117

Query: 450 P-ALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG 507
             AL+   T+L+N+L    E      EA   A +    + L     S ++      LSGG
Sbjct: 118 TFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL-----SHRITHIARDLSGG 172

Query: 508 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTI 565
           +KQR+ +AR + K P + L DE T  LD  +  +V  AL+  +   G + V+ +H    I
Sbjct: 173 EKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232

Query: 566 RNVDTVAV-IQQGQVVETGTHEELIAK 591
            ++   A+ ++ G++ E GT +E++A 
Sbjct: 233 EDLSDKAIWLENGEIKEEGTPDEVVAV 259

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 77.1 bits (190), Expect = 3e-15
 Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 33/247 (13%)

Query: 365 IEFKNV--TFSYPS----RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD 418
           +E +N+  TF Y +    R  V   +  S     G+T+A++G +GSGKST+  ++    +
Sbjct: 5   LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64

Query: 419 PNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF------ATTILENILYGKPEATMAE 472
           P +G +L+D+  +      +   +I ++ Q+P+         + IL+  L    +    +
Sbjct: 65  PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQ 124

Query: 473 VEAAASAANAHSFITLLPN--GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 530
            E           + LLP+   Y   +      L+ GQKQR+ +ARA++  PK+++ DEA
Sbjct: 125 REKQIIETLRQ--VGLLPDHASYYPHM------LAPGQKQRLGLARALILRPKVIIADEA 176

Query: 531 TSALDAGSESIVQEALDRLMV------GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 583
            ++LD    S     L  LM+      G + + V   L  ++++ D V V+ QG+VVE G
Sbjct: 177 LASLDMSMRS----QLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232

Query: 584 THEELIA 590
           +  +++A
Sbjct: 233 STADVLA 239

Length = 267

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 76.6 bits (189), Expect = 4e-15
 Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 20/216 (9%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
            +    +L +R G+  A++G +G+GKS+++  +     P +G+V ++G  +     + L  
Sbjct: 16   LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75

Query: 1087 KIG-LVQQEPALFAASIFDNIAYGK----EGATEAEVVEAARAANVHGFVSALPNAYKTP 1141
                L Q     F  ++ + +  G+     G    E    A  A     +S L       
Sbjct: 76   HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYR- 134

Query: 1142 VGERGVQLSGGQKQRIAIAR------AVLKNPAILLLDEATSALD-AESECVLQEALERL 1194
                   LSGG++QR+ +AR        + +   L LDE TSALD A     L+ A +  
Sbjct: 135  ------TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA 188

Query: 1195 MRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGS 1229
              G   + V H L+   +  D I ++  GR++  GS
Sbjct: 189  REGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224

Length = 259

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 76.4 bits (188), Expect = 4e-15
 Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 21/217 (9%)

Query: 1031 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLKIG 1089
             +  +RAG+   LVG +G+GKS+++A +       +G +   G+ +   +   L R +  
Sbjct: 18   LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76

Query: 1090 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 1149
            L QQ+   FA  ++  +   +   T  E++     A        L  +          QL
Sbjct: 77   LSQQQTPPFAMPVWHYLTLHQPDKTRTELLN--DVAGALALDDKLGRSTN--------QL 126

Query: 1150 SGGQKQRIAIARAVLK-----NPA--ILLLDEATSALDAESECVLQEALERLMR-GRTTV 1201
            SGG+ QR+ +A  VL+     NPA  +LLLDE  ++LD   +  L   L  L + G   V
Sbjct: 127  SGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIV 186

Query: 1202 LVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
            + +H L+ T+R      +++ G+++  G   E+++ P
Sbjct: 187  MSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPP 223

Length = 248

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 79.7 bits (197), Expect = 4e-15
 Identities = 55/214 (25%), Positives = 101/214 (47%), Gaps = 18/214 (8%)

Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPT----AGKVMIDGKDIRRLNLKSLRLKIGL 1090
             + G+  A++G+SG+GK++++  +  F  P     +G V+++G     ++ K +R     
Sbjct: 48   AKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNG---MPIDAKEMRAISAY 103

Query: 1091 VQQE----PALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERG 1146
            VQQ+    P L         A+ +      +  +  R   V   +  L     T +G  G
Sbjct: 104  VQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-LRKCANTRIGVPG 162

Query: 1147 VQ--LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-MRGRTTVLV 1203
                LSGG+++R+A A  +L +P +L  DE TS LD+     + + L+ L  +G+T +  
Sbjct: 163  RVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICT 222

Query: 1204 AHRLST--IRGVDCIGVVQDGRIVEQGSHSELVS 1235
             H+ S+      D I ++ +GR+   GS  + V 
Sbjct: 223  IHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 59/224 (26%), Positives = 93/224 (41%), Gaps = 55/224 (24%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI--DGKDI-------- 1076
            V K+ +L + AG+  AL G SG+GKS+++  +   Y P +G++++  +G  +        
Sbjct: 23   VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82

Query: 1077 RRLNLKSLRLKIGLVQQ-------EPAL--FAASIFDNIAYGKEGATEAEVVEAARAA-- 1125
              L ++  R  IG V Q         AL   A  + +       G         AR    
Sbjct: 83   EVLEVR--RKTIGYVSQFLRVIPRVSALEVVAEPLLER------GVPREAARARARELLA 134

Query: 1126 --NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
              N+   +  LP A            SGG++QR+ IAR  + +  ILLLDE T++LDA +
Sbjct: 135  RLNIPERLWHLPPA----------TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAAN 184

Query: 1184 ECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 1227
              V+ E +                   RG   IG+  D  + E 
Sbjct: 185  RQVVVELIAEAKA--------------RGAALIGIFHDEEVREL 214

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 80.4 bits (198), Expect = 5e-15
 Identities = 71/253 (28%), Positives = 120/253 (47%), Gaps = 30/253 (11%)

Query: 386  FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL 445
             +I F   +  A +G +G+GK+T +S++     P +G VL+   DI+T  L  +R  +G+
Sbjct: 949  LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGM 1007

Query: 446  VNQEPALFA-TTILENILY-----GKP-EATMAEVEAAASAANAHSFITLLPNGYSTQVG 498
              Q   LF   T+ E+IL+     G+  E    E+EA            L   G   +  
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEA-----------MLEDTGLHHKRN 1056

Query: 499  ERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVV 558
            E    LSGG ++++++A A + + K+++LDE TS +D  S   + + L +   GRT ++ 
Sbjct: 1057 EEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMS 1116

Query: 559  AHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK----AGAYASLIR----FQEMVRNRD 609
             H +     + D +A+I QG++  +GT   L  K     G Y +L+R     Q      +
Sbjct: 1117 THHMDEADLLGDRIAIISQGRLYCSGT--PLFLKNCFGTGFYLTLVRKMKNIQSQRGGCE 1174

Query: 610  FANPSTRRSRSTR 622
                 T +  STR
Sbjct: 1175 GTCSCTSKGFSTR 1187

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 78.7 bits (195), Expect = 6e-15
 Identities = 67/290 (23%), Positives = 121/290 (41%), Gaps = 40/290 (13%)

Query: 963  VAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDD-----------PDAEPVETIRGEIE 1011
            +A+ V+    ++R G+ VG    T+D       ++                  +  GE+ 
Sbjct: 206  IADRVT----VLRRGKVVG----TVDPVAETTEEELAELMVGREVVLRVVKPPSTPGEVV 257

Query: 1012 LRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 1071
            L   D +   R  V   KD +  +RAG+   + G +G+G+S ++  I     P +G++++
Sbjct: 258  LEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILL 317

Query: 1072 DGKDI---------RRLNLKSL---RLKIGLVQQEP--ALFAASIFDNIAYGKEGATEAE 1117
            +GKD+         RRL L  +   R   GLV              D   + + G  +  
Sbjct: 318  NGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRR 377

Query: 1118 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 1177
             +       +  F      +   P       LSGG +Q++ +AR + + P +L+  + T 
Sbjct: 378  AIRKFARELIEEF-DVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTR 432

Query: 1178 ALDAES-ECVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIV 1225
             LD  + E + +  LE    G+  +L++  L  I  + D I V+ +GRIV
Sbjct: 433  GLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482

Length = 501

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 75.2 bits (185), Expect = 6e-15
 Identities = 58/175 (33%), Positives = 90/175 (51%), Gaps = 19/175 (10%)

Query: 393 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG----LVNQ 448
           G+ ++++G SG GKST+++LI     P +G V+L+   I          + G    +V Q
Sbjct: 11  GEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI---------TEPGPDRMVVFQ 61

Query: 449 EPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG 507
             +L    T+ ENI     +  + ++  +   A     I L+  G +    +R  QLSGG
Sbjct: 62  NYSLLPWLTVRENI-ALAVDRVLPDLSKSERRAIVEEHIALV--GLTEAADKRPGQLSGG 118

Query: 508 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAH 560
            KQR+AIARA+   PK+LLLDE   ALDA +   +QE L ++      T ++V H
Sbjct: 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTH 173

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 76.7 bits (189), Expect = 6e-15
 Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 42/235 (17%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI---------- 1076
               + ++ I  G+  A++G +GSGK++ I  +     P  G +    KD           
Sbjct: 22   ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81

Query: 1077 -------------RRL-NLKSLRLKIGLVQQ--EPALFAASIFDNIAYG--KEGATEAEV 1118
                         +++  +K +R ++G+V Q  E  LF  +I  +I +G    G ++ E 
Sbjct: 82   KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEA 141

Query: 1119 VEAARAANVHGFVSALPNAY--KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 1176
             +  RAA     V  L  +Y  ++P       LSGGQK+R+A+A  +   P  L+ DE T
Sbjct: 142  KK--RAAKYIELV-GLDESYLQRSPFE-----LSGGQKRRVALAGILAMEPDFLVFDEPT 193

Query: 1177 SALDAESECVLQEALERL-MRGRTTVLVAHRLSTI--RGVDCIGVVQDGRIVEQG 1228
            + LD +    + E  + L  +G+T +LV H L  +       I   +DG+I++ G
Sbjct: 194  AGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI-FFKDGKIIKDG 247

Length = 305

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 79.5 bits (196), Expect = 6e-15
 Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 36/278 (12%)

Query: 994  DPDDPDAEPVETIRGE--IELRHVDFAYPSRP--------DVVVFKDFNLRIRAGQSQAL 1043
               +P  E    + GE  +++R++   +P R         +V   +  +  +  G++ +L
Sbjct: 296  AKQEPPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSL 355

Query: 1044 VGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSLRLKIGLVQQEPALFAA 1100
            VG SGSGKS+    + R  +   G+++ +G+ I  L+   L++LR  I  + Q+P  +A+
Sbjct: 356  VGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP--YAS 413

Query: 1101 ---------SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALP-NAYKTPVGERGVQLS 1150
                     SI + +        +A    AAR A +   V  LP +A++ P      + S
Sbjct: 414  LDPRQTVGDSIMEPLRVHGLLPGKAA---AARVAWLLERVGLLPEHAWRYPH-----EFS 465

Query: 1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLS 1208
            GGQ+QRI IARA+  NP +++ DEA SALD      +   L  L R  G   + ++H ++
Sbjct: 466  GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA 525

Query: 1209 TIRGVDC-IGVVQDGRIVEQGSHSELVSRPDGAYSRLL 1245
             +  +   + V+  G+IVE G    +   P   Y+R L
Sbjct: 526  VVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKL 563

Length = 623

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 74.6 bits (184), Expect = 6e-15
 Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 42/231 (18%)

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
             R +  +F D +  + AG++  + G +G+GK++++ ++     P AG+V   G+ I+ + 
Sbjct: 11   ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70

Query: 1081 LKSLRLKIGLVQQEPALFAA-SIFDNIAYGKE---GATEAEVVEAARAANVHGFVSALPN 1136
             +S    +  +  +P +    +  +N+ + +        A + EA     + G       
Sbjct: 71   -ESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED---- 125

Query: 1137 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 1196
                PVG    QLS GQ++R+A+AR  L    + +LDE  +ALD E   +L         
Sbjct: 126  ---LPVG----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL--------- 169

Query: 1197 GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247
              T ++ AH                G IV   +H  L      A  R L L
Sbjct: 170  --TALMAAH-------------AAQGGIVLLTTHQPLPI--ASAQIRRLDL 203

Length = 209

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 79.0 bits (195), Expect = 7e-15
 Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 20/212 (9%)

Query: 392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRWLRDQIGLVNQ 448
            G+T+ +VG SGSGKST    + R    + G +  D   +  L   QL  +R +I +V Q
Sbjct: 311 PGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQ 369

Query: 449 EP--AL-----FATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERG 501
           +P  +L         I E +   +P  + A+ E    A      + L P        E  
Sbjct: 370 DPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEE--VGLDPETRHRYPAE-- 425

Query: 502 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR--TTVVVA 559
              SGGQ+QRIAIARA++  P +++LDE TS+LD   ++ +   L  L        + ++
Sbjct: 426 --FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFIS 483

Query: 560 HRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 590
           H L  +R +   V V++QG+VVE G  E + A
Sbjct: 484 HDLHVVRALCHQVIVLRQGEVVEQGDCERVFA 515

Length = 529

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 78.0 bits (192), Expect = 7e-15
 Identities = 61/228 (26%), Positives = 101/228 (44%), Gaps = 26/228 (11%)

Query: 376 SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ 435
              D  +     +    G  V +VG +G+GK+T++  I     P AG VL+   D++ L 
Sbjct: 12  EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71

Query: 436 LRWLRDQIGLVNQEPAL-FATTILENILYGKP----------EATMAEVEAAASAANAHS 484
            R    ++  V Q+ +L F   + + +  G+           E   A VE A        
Sbjct: 72  ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ 131

Query: 485 FITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
           F             +R V  LSGG++QR+ +ARA+ +   +LLLDE T++LD   +    
Sbjct: 132 FA------------DRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTL 179

Query: 544 EALDRLM-VGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 589
           E + RL+  G+T V   H L    R  D + ++  G+V   G   +++
Sbjct: 180 ELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227

Length = 402

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 76.0 bits (187), Expect = 7e-15
 Identities = 69/262 (26%), Positives = 120/262 (45%), Gaps = 59/262 (22%)

Query: 1009 EIELRHVDFAYPS----RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP 1064
            E+      F Y +    R  V   K  +  +R GQ+ A++G +GSGKS++  ++    +P
Sbjct: 6    EVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP 65

Query: 1065 TAGKVMIDG------------KDIR--------RLNLKSLRLKIGLVQQEPALFAASIFD 1104
            T+G+++I+             K IR         LN    RL+IG +   P      +  
Sbjct: 66   TSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP---RLRIGQILDFPLRLNTDL-- 120

Query: 1105 NIAYGKEGATEAEVVEAARAANVHGFVSALPN-AYKTPVGERGVQLSGGQKQRIAIARAV 1163
                 +      ++ E  R       V  LP+ A   P       L+ GQKQR+A+ARA+
Sbjct: 121  -----EPEQRRKQIFETLR------MVGLLPDHANYYPH-----MLAPGQKQRVALARAL 164

Query: 1164 LKNPAILLLDEATSALDA--ESECV-----LQEALERLMRGRTTVLVAHRLSTIRGV-DC 1215
            +  P I++ DEA ++LD    S+ +     LQE       G + + V   +  I+ + D 
Sbjct: 165  ILRPKIIIADEALASLDMSMRSQLINLMLELQEKQ-----GISYIYVTQHIGMIKHISDQ 219

Query: 1216 IGVVQDGRIVEQGSHSELVSRP 1237
            + V+ +G +VE+GS +++++ P
Sbjct: 220  VLVMHEGEVVERGSTADVLASP 241

Length = 267

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 75.7 bits (187), Expect = 7e-15
 Identities = 70/248 (28%), Positives = 111/248 (44%), Gaps = 48/248 (19%)

Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL--- 1084
             +D +  +  G+   +VG SGSGK++++  +     P AG+V    +D +  +L +L   
Sbjct: 22   CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81

Query: 1085 ------RLKIGLVQQEPA---LFAASIFDNIA----------YGKEGATEA---EVVE-- 1120
                  R + G V Q P        S   NI           YG   AT     E VE  
Sbjct: 82   ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEID 141

Query: 1121 AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 1180
            AAR       +  LP  +           SGG +QR+ IAR ++ +P ++ +DE T  LD
Sbjct: 142  AAR-------IDDLPTTF-----------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183

Query: 1181 AESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
               +  L + L  L+R  G   V+V H L+  R +   + V++ GR+VE G   +++  P
Sbjct: 184  VSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDP 243

Query: 1238 DGAYSRLL 1245
               Y++LL
Sbjct: 244  QHPYTQLL 251

Length = 258

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 79.1 bits (195), Expect = 7e-15
 Identities = 70/214 (32%), Positives = 107/214 (50%), Gaps = 40/214 (18%)

Query: 393 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRWLRDQIGLVNQE 449
           G+T+++VG SGSGKST    + R  +   G ++ +   I TL   +L+ LR  I  + Q+
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409

Query: 450 PALFAT---------TILE-----NILYGKPEATMAEVEAAASAANAHSFITLLPNGYST 495
           P  +A+         +I+E      +L GK         AAA  A     + LLP     
Sbjct: 410 P--YASLDPRQTVGDSIMEPLRVHGLLPGK--------AAAARVAWLLERVGLLPEHAWR 459

Query: 496 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM----- 550
              E     SGGQ+QRI IARA+  NPK+++ DEA SALD    SI  + ++ L+     
Sbjct: 460 YPHE----FSGGQRQRICIARALALNPKVIIADEAVSALDV---SIRGQIINLLLDLQRD 512

Query: 551 VGRTTVVVAHRLSTIRNVD-TVAVIQQGQVVETG 583
            G   + ++H ++ +  +   VAV+  GQ+VE G
Sbjct: 513 FGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546

Length = 623

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 78.9 bits (195), Expect = 8e-15
 Identities = 64/287 (22%), Positives = 112/287 (39%), Gaps = 40/287 (13%)

Query: 290 AGVFIRN-----GVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAG---YKLMEI 341
           A  +        G+     AF  + S      SL     N  A +  +A      +  + 
Sbjct: 312 APRYFSGQITFGGLMQAVGAFGQVHS------SLSWFIDNYDAIADWRATLLRLAEFRQA 365

Query: 342 IK--QKPSIIQDPTNGRC--LDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVA 397
           ++  Q  +     T  R    D  +  I  +N++   P     ++  + +     G+ + 
Sbjct: 366 LEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-QTLL-SELNFEVRPGERLL 423

Query: 398 VVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL-VNQEPALFATT 456
           + G SG+GK++++  +   +   +G           + +    D   L + Q P L   T
Sbjct: 424 ITGESGAGKTSLLRALAGLWPWGSG----------RISMP--ADSALLFLPQRPYLPQGT 471

Query: 457 ILENILY--GKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 514
           + E + Y    P+ + AE+ A             L      +       LSGG++QR+A 
Sbjct: 472 LREALCYPNAAPDFSDAELVAVLHKVGLGDLAERL-----DEEDRWDRVLSGGEQQRLAF 526

Query: 515 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHR 561
           AR +L  PK + LDEATSALD  +E  + + L   +   T + V HR
Sbjct: 527 ARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573

Length = 604

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 73.6 bits (182), Expect = 9e-15
 Identities = 48/209 (22%), Positives = 93/209 (44%), Gaps = 52/209 (24%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-LKSLR 1085
              +D +  +RAG+   + G  G+G++ +   +     P +G++ +DGK + R +   ++R
Sbjct: 15   AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74

Query: 1086 LKIGLV----QQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTP 1141
              I  V    ++E  +   S+ +NIA                                  
Sbjct: 75   AGIAYVPEDRKREGLVLDLSVAENIAL--------------------------------- 101

Query: 1142 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR----- 1196
                   LSGG +Q++ +AR + ++P +L+LDE T  +D  +    +  + RL+R     
Sbjct: 102  ----SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGA----KAEIYRLIRELADA 153

Query: 1197 GRTTVLVAHRLSTIRGV-DCIGVVQDGRI 1224
            G+  +L++  L  + G+ D I V+ +GRI
Sbjct: 154  GKAVLLISSELDELLGLCDRILVMYEGRI 182

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 20/216 (9%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-LKSLR 1085
            + +  +L +  G+   ++G +G GK++++  +       +G + +DG+DI +L   +  R
Sbjct: 15   ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74

Query: 1086 LKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGE 1144
              I  V Q   +F   ++ +N+  G             R+  +   +  L    K  +G 
Sbjct: 75   AGIAYVPQGREIFPRLTVEENLLTGLAAL-------PRRSRKIPDEIYELFPVLKEMLGR 127

Query: 1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD----AESECVLQEALERL--MRGR 1198
            RG  LSGGQ+Q++AIARA++  P +LLLDE T  +      +    +   + RL    G 
Sbjct: 128  RGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKD----IGRVIRRLRAEGGM 183

Query: 1199 TTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSEL 1233
              +LV   L   R + D   V++ GR+V  G+  EL
Sbjct: 184  AILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 76.0 bits (187), Expect = 1e-14
 Identities = 66/232 (28%), Positives = 115/232 (49%), Gaps = 18/232 (7%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           I+F+NV   Y    D ++    S     G+   ++G +G+GK+T + ++     P+AG +
Sbjct: 8   IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64

Query: 425 LLDNVDIKTLQLRWLRDQIGLV----NQEPALFATTILENILYGKPEATMAEVEAAASAA 480
            L    + + + R  R ++G+V    N +P     T+ EN+L       ++   A A   
Sbjct: 65  SLCGEPVPS-RARHARQRVGVVPQFDNLDPDF---TVRENLLVFGRYFGLSAAAARALVP 120

Query: 481 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
               F  L  N    +VGE    LSGG K+R+ +ARA++ +P +L+LDE T+ LD  +  
Sbjct: 121 PLLEFAKL-ENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH 175

Query: 541 IVQEALDRLMV-GRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELIA 590
           ++ E L  L+  G+T ++  H +    R  D + VI++G+ +  G    LI 
Sbjct: 176 LMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227

Length = 306

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 57/230 (24%), Positives = 93/230 (40%), Gaps = 66/230 (28%)

Query: 376 SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN----VDI 431
            R +  +F D S    AG+ + + G +G+GK+T++ ++     P+AG V           
Sbjct: 11  ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70

Query: 432 KTLQ--LRWLRDQIGLVNQEPALFATTILENI-----LYGKPEATMAEVEAAASAANAHS 484
           ++    L +L  Q G+   +  L   T LEN+      +G   A  A +  A        
Sbjct: 71  ESYHQALLYLGHQPGI---KTEL---TALENLHFWQRFHGSGNA--ATIWEAL------- 115

Query: 485 FITLLPNGYSTQVGERGV------QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 538
                      QVG  G+      QLS GQ++R+A+AR  L    + +LDE  +ALD   
Sbjct: 116 ----------AQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEG 165

Query: 539 ESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 588
            +++           T ++ AH               QG +V   TH+ L
Sbjct: 166 VALL-----------TALMAAH-------------AAQGGIVLLTTHQPL 191

Length = 209

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 78.3 bits (193), Expect = 1e-14
 Identities = 57/232 (24%), Positives = 113/232 (48%), Gaps = 23/232 (9%)

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
            S   V   K  NL +  G+  AL+G +G+GKS+++ ++   ++PT G + I+  +  +L+
Sbjct: 14   SFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD 73

Query: 1081 LK-SLRLKIGLVQQEPALF-AASIFDNIAYGKE------GATEAEVVEAARAANVHGFVS 1132
             K + +L IG++ QE ++    ++ +N+  G+       G    +  E    A +     
Sbjct: 74   HKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRV 133

Query: 1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVLQEAL 1191
             L       V      LS   KQ + IA+ ++ +  ++++DE TS+L + E + +    +
Sbjct: 134  GLKVDLDEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF--LI 187

Query: 1192 ERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDG-----RIVEQGSHSELVS 1235
               +R  G   V ++H+L+ IR + D   V++DG      +V   S+ ++V 
Sbjct: 188  MNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVR 239

Length = 510

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 66/248 (26%), Positives = 107/248 (43%), Gaps = 49/248 (19%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +    ++  Y         RD S     G+ + +VG SGSGK+T++  I     P+AG V
Sbjct: 7   LSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV 63

Query: 425 LLDN-----VDIKTL----QLRWLRDQIGLVNQEPA-------LFATTILENIL------ 462
                     D+ T+    + R LR + G V+Q P             I E ++      
Sbjct: 64  TYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH 123

Query: 463 YGKPEAT----MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM 518
           YG   A     + EVE                     ++ +     SGG +QR+ IAR +
Sbjct: 124 YGNIRAEAQDWLEEVEIDL-----------------DRIDDLPRTFSGGMQQRLQIARNL 166

Query: 519 LKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNV-DTVAVIQ 575
           +  P+++ +DE T  LD   ++ + + L  L+   G   V+V H L+  R + D + V++
Sbjct: 167 VTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMK 226

Query: 576 QGQVVETG 583
           QGQVVE+G
Sbjct: 227 QGQVVESG 234

Length = 258

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 77.6 bits (192), Expect = 1e-14
 Identities = 72/232 (31%), Positives = 113/232 (48%), Gaps = 30/232 (12%)

Query: 1023 PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 1082
            P V    D +   RAGQ  AL+G +G+GKS+++ ++   Y P AG ++IDG+++R  +  
Sbjct: 15   PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTT 74

Query: 1083 -SLRLKIGLVQQE----PALFAASIFDNIAYG----KEGAT-EAEVVEAARAANVHGFVS 1132
             +L   + ++ QE    P +   ++ +N+  G    K G      +   AR    H  V 
Sbjct: 75   AALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD 131

Query: 1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA-ESECVLQEAL 1191
              P+   TP+      LS GQ+Q + IA+A+ +N  ++  DE TS+L A E E  L   +
Sbjct: 132  IDPD---TPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIE-QLFRVI 183

Query: 1192 ERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVE------QGSHSELVS 1235
              L   GR  + V+HR+  I    D I V +DGR V       Q    +LV 
Sbjct: 184  RELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVDRDQLVQ 235

Length = 501

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 73.7 bits (181), Expect = 2e-14
 Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 30/201 (14%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS--- 1083
            V  + +  I  G+  A+VG+SGSGKS+++ L+     PT+G V+ +G+ + +L+  +   
Sbjct: 24   VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83

Query: 1084 LR-LKIGLVQQEPAL---FAASIFDNIAY----GKEGATEAEVVEAARAANVHGFVSALP 1135
            LR  K+G + Q   L   F A   +N+A     GK+   E      +RA  +   V    
Sbjct: 84   LRNQKLGFIYQFHHLLPDFTA--LENVAMPLLIGKKKPAEIN----SRALEMLAAVGLEH 137

Query: 1136 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL- 1194
             A   P      +LSGG++QR+AIARA++ NP ++L DE T  LDA +   + + L  L 
Sbjct: 138  RANHRPS-----ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELN 192

Query: 1195 MRGRTTVLV-------AHRLS 1208
                T  LV       A R+S
Sbjct: 193  RLQGTAFLVVTHDLQLAKRMS 213

Length = 233

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 73.8 bits (182), Expect = 2e-14
 Identities = 47/187 (25%), Positives = 93/187 (49%), Gaps = 10/187 (5%)

Query: 1022 RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIE---RFYDPTAGKVMIDGKDIRR 1078
                 +  D +L + +GQ  A++G+SGSGK++++  I         T+G+++ +G+  + 
Sbjct: 17   NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP 76

Query: 1079 LNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA 1137
                  +  +  V+Q+  L    ++ + + Y        +  +A R   V      L + 
Sbjct: 77   ---DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE--DVLLRDL 131

Query: 1138 YKTPVGERGVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 1196
              T +G   V+ +SGG+++R++IA  +L +P +L+LDE TS LD+ +   L   L +L R
Sbjct: 132  ALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR 191

Query: 1197 GRTTVLV 1203
                V++
Sbjct: 192  RNRIVIL 198

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 77.1 bits (190), Expect = 2e-14
 Identities = 59/214 (27%), Positives = 115/214 (53%), Gaps = 22/214 (10%)

Query: 393 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL----DNVDI--KTLQLRWLRDQ-IGL 445
           G+   +VG SG+GK+T+  +I    +P +G V +    + VD+       R    + IG+
Sbjct: 310 GEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGI 369

Query: 446 VNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV-- 502
           ++QE  L+   T+L+N+     EA    +E     A   + ITL   G+  +  E  +  
Sbjct: 370 LHQEYDLYPHRTVLDNL----TEAI--GLELPDELARMKAVITLKMVGFDEEKAEEILDK 423

Query: 503 ---QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL--DRLMVGRTTVV 557
              +LS G++ R+A+A+ ++K P+I++LDE T  +D  ++  V  ++   R  + +T ++
Sbjct: 424 YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFII 483

Query: 558 VAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 590
           V+H +  + +V D  A+++ G++V+ G  EE++ 
Sbjct: 484 VSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 38/243 (15%)

Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL--- 1084
             +D +  +  G+   +VG SGSGK++++  I     P AG V    +D +  +L ++   
Sbjct: 22   CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81

Query: 1085 ------RLKIGLVQQEPA---LFAASIFDNIA----------YGKEGATEAEVVEAARAA 1125
                  R + G V Q P        S   NI           YG   A   + +E     
Sbjct: 82   ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLE--EVE 139

Query: 1126 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 1185
                 +  LP  +           SGG +QR+ IAR ++  P ++ +DE T  LD   + 
Sbjct: 140  IDLDRIDDLPRTF-----------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQA 188

Query: 1186 VLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYS 1242
             L + L  L+R  G   V+V H L+  R + D + V++ G++VE G    ++  P   Y+
Sbjct: 189  RLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYT 248

Query: 1243 RLL 1245
            +LL
Sbjct: 249  QLL 251

Length = 258

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 76.1 bits (188), Expect = 2e-14
 Identities = 65/214 (30%), Positives = 101/214 (47%), Gaps = 37/214 (17%)

Query: 391 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL-DNVDIKTLQLRWL---RDQIGLV 446
           PA    A+ G SG+GK+++++ I     P  G ++L   V     +   L   + +IG V
Sbjct: 22  PAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYV 81

Query: 447 NQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQ-- 503
            Q+  LF    +  N+ YG     MA+       A     + LL           G++  
Sbjct: 82  FQDARLFPHYKVRGNLRYG-----MAKS----MVAQFDKIVALL-----------GIEPL 121

Query: 504 -------LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRT 554
                  LSGG+KQR+AI RA+L  P++LL+DE  ++LD   +  +   L+RL   +   
Sbjct: 122 LDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIP 181

Query: 555 TVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEE 587
            + V+H L  I R  D V V++QG+V   G  EE
Sbjct: 182 ILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEE 215

Length = 352

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 76.9 bits (190), Expect = 2e-14
 Identities = 62/215 (28%), Positives = 116/215 (53%), Gaps = 24/215 (11%)

Query: 1023 PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA---GKVMIDGKDIRRL 1079
              V    + +L++RAG+  +L G +G+GKS+++ ++   Y P     G+++ +G++++  
Sbjct: 16   GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQAS 74

Query: 1080 NLK-SLRLKIGLVQQEPALFAA-SIFDNIAYGKE----GAT--EAEVVEAAR-AANVHGF 1130
            N++ + R  I ++ QE AL    S+ +NI  G E    G    +A  + A +  A +   
Sbjct: 75   NIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD 134

Query: 1131 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA 1190
            ++  P    TPVG     L  GQ+Q + IA+A+ K   +L+LDE T++L      VL + 
Sbjct: 135  IN--PA---TPVGN----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185

Query: 1191 LERLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGR 1223
            +  L   G   + ++H+L+ ++ + D I V++DGR
Sbjct: 186  IRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220

Length = 506

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 43/230 (18%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E KN++  +  +       + S+  P      ++G +G+GKST++ +I     P +G +
Sbjct: 1   LETKNLSKRFGKQ---TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI 57

Query: 425 LLDNVDIKTLQLRWLRD---QIGLVNQEPALFAT-TILENI-----LYGKPEATMAEVEA 475
           + D          W R    +IG + + P L+   T  EN+     L G P++ + EV  
Sbjct: 58  IFDG-------HPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLN 110

Query: 476 AASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD 535
                     I  L N    +      Q S G KQR+ IA A+L +PK+L+LDE T+ LD
Sbjct: 111 ----------IVDLTNTGKKKAK----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156

Query: 536 AGSESIVQEALDRLMV-----GRTTVVVAHRLSTIRNV-DTVAVIQQGQV 579
                 +QE L  L+      G T ++ +H LS ++ + D + +I +G +
Sbjct: 157 PIG---IQE-LRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVL 202

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 74.3 bits (182), Expect = 3e-14
 Identities = 67/233 (28%), Positives = 107/233 (45%), Gaps = 28/233 (12%)

Query: 1017 FAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK-- 1074
            F Y   P   V K  NL         LVGA+G GKS++   +     P  G V+  GK  
Sbjct: 9    FRYQDEP---VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65

Query: 1075 DIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAEVV----EAARAAN 1126
            D  +  L +LR ++  V Q+P   +F   I  +IA+     G  EAE+     EA    +
Sbjct: 66   DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVD 125

Query: 1127 VHGFVSALPNAYKTPVGERGVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 1185
               F              + +Q LS GQK+R+AIA A++     LLLDE T+ LD     
Sbjct: 126  AQHF------------RHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRT 173

Query: 1186 VLQEALERLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 1236
             +   + R++ +G   ++ +H +  I  + D + V++ G+I+  G+  E+ + 
Sbjct: 174  QMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226

Length = 271

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 76.8 bits (189), Expect = 3e-14
 Identities = 65/246 (26%), Positives = 121/246 (49%), Gaps = 28/246 (11%)

Query: 1010 IELRHVDFAYPS--RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            I++R+V   Y S  R  V    + +L ++ G+   +VG SG+GK+++  +I    +PT+G
Sbjct: 280  IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339

Query: 1068 KV-------MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNI--AYGKEGATEAE 1117
            +V        +D            +  IG++ QE  L+   ++ DN+  A G E   E  
Sbjct: 340  EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA 399

Query: 1118 VVEAARAANVHGF-----VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLL 1172
             ++A     + GF        L    K P      +LS G++ R+A+A+ ++K P I++L
Sbjct: 400  RMKAVITLKMVGFDEEKAEEILD---KYPD-----ELSEGERHRVALAQVLIKEPRIVIL 451

Query: 1173 DEATSALDAESECVLQEAL--ERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGS 1229
            DE T  +D  ++  +  ++   R    +T ++V+H +  +  V D   +++DG+IV+ G 
Sbjct: 452  DEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511

Query: 1230 HSELVS 1235
              E+V 
Sbjct: 512  PEEIVE 517

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 77.6 bits (191), Expect = 4e-14
 Identities = 49/181 (27%), Positives = 95/181 (52%), Gaps = 2/181 (1%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
            V +D +  +  GQ   L+G +GSGKS++++ + R    T G++ IDG     + L++ R 
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRK 1292

Query: 1087 KIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERG 1146
              G++ Q+  +F+ +   N+    E  ++ E+ + A    +   +   P+     + + G
Sbjct: 1293 AFGVIPQKVFIFSGTFRKNLD-PYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351

Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHR 1206
              LS G KQ + +AR++L    ILLLDE ++ LD  +  ++++ L++     T +L  HR
Sbjct: 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHR 1411

Query: 1207 L 1207
            +
Sbjct: 1412 V 1412

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 69/243 (28%), Positives = 106/243 (43%), Gaps = 34/243 (13%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN---- 420
           IE +N+           +    S+    G+ +A+VGGSGSGKS   +             
Sbjct: 5   IELRNIALQ----AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60

Query: 421 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEP-ALF------ATTILENIL-YGKP--EATM 470
           AG VLLD   +    LR    +I  + Q P + F       T   E  L  GKP  +AT+
Sbjct: 61  AGRVLLDGKPVAPCALRGR--KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATL 118

Query: 471 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 530
                A    NA   + L P            ++SGG  QR+ IA A+L     ++ DE 
Sbjct: 119 TAALEAVGLENAARVLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEP 167

Query: 531 TSALDAGSESIVQEALDRLMVGRT--TVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEE 587
           T+ LD  +++ + + L+ ++  R    ++V H +  + R  D VAV+  G++VE G  E 
Sbjct: 168 TTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVET 227

Query: 588 LIA 590
           L  
Sbjct: 228 LFN 230

Length = 254

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 73.9 bits (181), Expect = 4e-14
 Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 15/212 (7%)

Query: 392 AGKTVAVVGGSGSGKSTVV----SLIERFYDPNAGHVLLDNVDIKTLQL----RWLRDQI 443
            G+ VA++G SGSGKST++     LI       +   LL     +  +L    R  R   
Sbjct: 29  HGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANT 88

Query: 444 GLVNQEPALF-ATTILENILYGKPEAT---MAEVEAAASAANAHSFITLLPNGYSTQVGE 499
           G + Q+  L    ++LEN+L G   +T                 +   L   G      +
Sbjct: 89  GYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ 148

Query: 500 RGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVV 557
           R   LSGGQ+QR+AIARA+++  K++L DE  ++LD  S  IV + L  +    G T VV
Sbjct: 149 RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVV 208

Query: 558 VAHRLS-TIRNVDTVAVIQQGQVVETGTHEEL 588
             H++   +R  + +  ++QG V   G+ ++ 
Sbjct: 209 TLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240

Length = 262

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 73.5 bits (180), Expect = 5e-14
 Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 20/232 (8%)

Query: 368 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 427
           + +T  Y       +  + ++  P G   A++G +G GKST++  + R   P  GHV LD
Sbjct: 11  EQLTLGYGKY---TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLD 67

Query: 428 NVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGK-PEATM-----AEVEAAASAA 480
              I+    + +  +IGL+ Q        T+ E +  G+ P   +      E E A + A
Sbjct: 68  GEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKA 127

Query: 481 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
              + IT L         +    LSGGQ+QR  IA  + +   I+LLDE T+ LD   + 
Sbjct: 128 MQATGITHL-------ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQI 180

Query: 541 IVQEALDRL--MVGRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 589
            + E L  L    G T   V H L+   R    +  +++G++V  G  +E++
Sbjct: 181 DLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232

Length = 265

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 73.0 bits (180), Expect = 5e-14
 Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 33/220 (15%)

Query: 1031 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLKIG 1089
             +  +RAG+   LVG +G+GKS+++A +     P +G +   G+ +   +   L R +  
Sbjct: 15   LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73

Query: 1090 LVQQEPALFAASIFDNIA-YGKEGATEAEVVEAARAANVHGFVSALPNAYK--TPVGERG 1146
            L QQ+   FA  +F  +  +  +      V  A     ++    AL    K    V    
Sbjct: 74   LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASA-----LNEVAEALGLDDKLGRSVN--- 125

Query: 1147 VQLSGGQKQRIAIARAVLK-----NPA--ILLLDEATSALDAESECVLQE-ALERLMR-- 1196
             QLSGG+ QR+ +A  VL+     NPA  +LLLDE  ++LD     V Q+ AL+RL+   
Sbjct: 126  -QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-----VAQQAALDRLLSEL 179

Query: 1197 ---GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSE 1232
               G   V+ +H L+ T+R  D + +++ G+++  G   E
Sbjct: 180  CQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDE 219

Length = 248

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 74.0 bits (182), Expect = 6e-14
 Identities = 64/243 (26%), Positives = 101/243 (41%), Gaps = 31/243 (12%)

Query: 371 TFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD 430
            F +     +   +D S   P G+ V  +G +G+GKST + ++     P +G V ++  D
Sbjct: 28  HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD 87

Query: 431 IKTLQLRWLRDQIGLVNQE--------PALFATTILENILYGKPEATMAEVEAAASAANA 482
               +  +LR  IGLV  +        PAL +  +L+ I          E+     A   
Sbjct: 88  PFRRREEYLRS-IGLVMGQKLQLWWDLPALDSLEVLKLI---------YEIPDDEFAERL 137

Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
                +L       +     +LS GQ+ R  +A A+L  PK+L LDE T  LD       
Sbjct: 138 DFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV----NA 191

Query: 543 QEALDRLM-----VGRTTVVVA-HRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAGAY 595
           Q  +   +       + TV++  H    I  + D V +I QGQ+V  GT  +L  + G Y
Sbjct: 192 QANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251

Query: 596 ASL 598
              
Sbjct: 252 KEF 254

Length = 325

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 76.0 bits (187), Expect = 7e-14
 Identities = 65/255 (25%), Positives = 113/255 (44%), Gaps = 43/255 (16%)

Query: 1022 RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 1081
            +  +   ++ +  ++ G++ A+VG SGSGKS     + R  +   G V  D   +RR + 
Sbjct: 26   QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSR 85

Query: 1082 KSLRLK--------------IGLVQQEPAL-----------FAASIFDNIAYGKEGA-TE 1115
            + + L               + ++ QEP              A SI  +    +E A  E
Sbjct: 86   QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVE 145

Query: 1116 AE-VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 1174
            A+ +++  R       +S  P+           QLSGG +QR+ IA A+   PA+L+ DE
Sbjct: 146  AKRMLDQVRIPEAQTILSRYPH-----------QLSGGMRQRVMIAMALSCRPAVLIADE 194

Query: 1175 ATSALDAESEC-VLQ--EALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSH 1230
             T+ALD   +  +LQ  + L++ M     + + H +  +  + D + V+  G  VE GS 
Sbjct: 195  PTTALDVTIQAQILQLIKVLQKEM-SMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSV 253

Query: 1231 SELVSRPDGAYSRLL 1245
             ++   P   Y+R L
Sbjct: 254  EQIFHAPQHPYTRAL 268

Length = 623

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 73.5 bits (181), Expect = 7e-14
 Identities = 53/226 (23%), Positives = 108/226 (47%), Gaps = 23/226 (10%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +E+  V  ++    D     + +  +  G+   L+G +G+GK++   +I    +PT G++
Sbjct: 3    LEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAEVVEAARAAN 1126
              +G  + +     ++ +IG + +E  L+   ++ D + Y  E  G  +AE+ +  +A  
Sbjct: 60   TWNGGPLSQ----EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQA-- 113

Query: 1127 VHGFVSAL--PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 1184
               ++  L         + E    LS G +Q+I    AV+  P +L+LDE  S LD  + 
Sbjct: 114  ---WLERLEIVGKKTKKIKE----LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNV 166

Query: 1185 CVLQEALERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQG 1228
             +L++A+  L   G T +  +HR+  +    D + +++ G+ V  G
Sbjct: 167  ELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYG 212

Length = 300

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 71.4 bits (176), Expect = 7e-14
 Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 37/200 (18%)

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL- 1079
             R + ++F   +  + AG+   + G +G+GK+S++ ++     P AG+V+  G+ IRR  
Sbjct: 10   ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69

Query: 1080 -----NLKSLRLKIG--------LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAAN 1126
                 +L    L +G        L   E   F   +            +  + EA     
Sbjct: 70   DEYHQDL----LYLGHQPGIKTELTALENLRFYQRLHGP-------GDDEALWEALAQVG 118

Query: 1127 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 1186
            + GF          PV     QLS GQ++R+A+AR  L    + +LDE  +A+D +    
Sbjct: 119  LAGFEDV-------PVR----QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVAR 167

Query: 1187 LQEALER-LMRGRTTVLVAH 1205
            L+  L +   +G   +L  H
Sbjct: 168  LEALLAQHAEQGGMVILTTH 187

Length = 204

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 72.4 bits (178), Expect = 9e-14
 Identities = 52/221 (23%), Positives = 104/221 (47%), Gaps = 17/221 (7%)

Query: 1030 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG-KDIRRLNLKSL-RLK 1087
            D +  +  G+ + L+G +G+GK++++ +I     P  G+V+ DG  D+ +L    + R  
Sbjct: 23   DLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82

Query: 1088 IGLVQQEPALFAA-SIFDN--IAYGKEGATEAEVV------EAARAANVHGFVSALPNAY 1138
            IG   Q+P +F   ++ +N  +A  ++ +  A +       E  R   +   +       
Sbjct: 83   IGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD 142

Query: 1139 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR 1198
            +         LS GQKQ + I   + ++P +LLLDE  + +         E L+ L    
Sbjct: 143  RL-----AALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKH 197

Query: 1199 TTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 1238
            + ++V H +  +R + D + V+ +G ++ +GS  E+ + P 
Sbjct: 198  SILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDPK 238

Length = 249

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 74.0 bits (182), Expect = 1e-13
 Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 19/212 (8%)

Query: 393 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN----VDIKTL---QLRWLR-DQIG 444
           G+   ++G SGSGKST++  +      + G VL+ +    VD+       LR LR  ++ 
Sbjct: 50  GEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVS 109

Query: 445 LVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV- 502
           +V Q+ AL    T+ EN+ +G     M + E           + L       Q  +R   
Sbjct: 110 MVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGL------AQWADRKPG 163

Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAH 560
           +LSGG +QR+ +ARA      ILL+DE  SALD    + +Q+ L  L   + +T V V+H
Sbjct: 164 ELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSH 223

Query: 561 RL-STIRNVDTVAVIQQGQVVETGTHEELIAK 591
            L   ++  + +A+++ G++++ GT EE++  
Sbjct: 224 DLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 75.3 bits (185), Expect = 1e-13
 Identities = 81/274 (29%), Positives = 121/274 (44%), Gaps = 49/274 (17%)

Query: 964  AETVSLAPEIIRGGESVGSVFSTLDRSTRIDPD------DPDAEPVETIRGEIELRHVDF 1017
            A+  SL    I+  + +G V + ++     DPD       PD  P   I   I      F
Sbjct: 465  AKRASLVQSRIKALDRLGHVDAVVN-----DPDYKFEFPTPDDRPGPPI---ISFSDASF 516

Query: 1018 AYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR 1077
             YP  P  ++FK+ N  I      A+VG +G GKS+++ LI     P++G V    K   
Sbjct: 517  GYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--V 572

Query: 1078 RLNLKSLRLKIGL-VQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPN 1136
            R+ + S     GL +   P L+    F        G  E ++     +  V G + AL  
Sbjct: 573  RMAVFSQHHVDGLDLSSNPLLYMMRCF-------PGVPEQKLRAHLGSFGVTGNL-ALQP 624

Query: 1137 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 1196
             Y          LSGGQK R+A A+   K P ILLLDE ++ LD        +A+E L++
Sbjct: 625  MYT---------LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDL-------DAVEALIQ 668

Query: 1197 GRT-----TVLVAHRLSTIRG-VDCIGVVQDGRI 1224
            G        ++V+H    I G VD + VV +G++
Sbjct: 669  GLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKV 702

Length = 718

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 61/233 (26%), Positives = 115/233 (49%), Gaps = 23/233 (9%)

Query: 368 KNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD 427
           KN+  +Y  R    +  D S+   +G+ V ++G +G+GK+T   ++      +AG++++D
Sbjct: 7   KNLAKAYKGRR---VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIID 63

Query: 428 NVDIKTLQLRW-LRDQIGLVNQEPALFAT-TILEN---ILYGKPEATMAEVEAAASAANA 482
           + DI  L L    R  IG + QE ++F   ++ +N   +L  + + +  + E  A+    
Sbjct: 64  DEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELME 123

Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS---- 538
              I  L +         G  LSGG+++R+ IARA+  NPK +LLDE  + +D  S    
Sbjct: 124 EFHIEHLRDSM-------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDI 176

Query: 539 ESIVQEALDRLMVGRTTVVVAHRL-STIRNVDTVAVIQQGQVVETGTHEELIA 590
           + I++   D    G   ++  H +  T+   +   ++ QG ++  GT  E++ 
Sbjct: 177 KRIIEHLRDS---GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226

Length = 241

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 71.5 bits (175), Expect = 1e-13
 Identities = 59/225 (26%), Positives = 111/225 (49%), Gaps = 17/225 (7%)

Query: 1018 AYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR 1077
            AY  R    V +D +L + +G+   L+G +G+GK++   ++       AG ++ID +DI 
Sbjct: 12   AYKGRR---VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDIS 68

Query: 1078 RLNLKS-LRLKIGLVQQEPALFAA-SIFDNIAYG---KEGATEAEVVEAARAANVHGFVS 1132
             L L +  R  IG + QE ++F   S++DN+      ++  +  +  + A        + 
Sbjct: 69   LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE 128

Query: 1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 1192
             L ++        G  LSGG+++R+ IARA+  NP  +LLDE  + +D  S   ++  +E
Sbjct: 129  HLRDSM-------GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIE 181

Query: 1193 RLMRGRTTVLVA-HRL-STIRGVDCIGVVQDGRIVEQGSHSELVS 1235
             L      VL+  H +  T+   +   +V  G ++  G+ +E++ 
Sbjct: 182  HLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226

Length = 241

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 73.1 bits (180), Expect = 2e-13
 Identities = 65/229 (28%), Positives = 111/229 (48%), Gaps = 14/229 (6%)

Query: 364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           ++  +NVT +Y    DV+I +D ++    G+ V  VG SG GKST++ +I    D  +G 
Sbjct: 3   SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59

Query: 424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANA 482
           + +    +  +        +G+V Q  AL+   ++ EN+ +G   A   + E        
Sbjct: 60  LFIGEKRMNDVPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQV 117

Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
              + L     +  +  +   LSGGQ+QR+AI R ++  P + LLDE  S LDA     +
Sbjct: 118 AEVLQL-----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172

Query: 543 QEALDRL--MVGRTTVVVAH-RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
           +  + RL   +GRT + V H ++  +   D + V+  G+V + G   EL
Sbjct: 173 RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221

Length = 369

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 15/215 (6%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088
            +D +  I  G+    +GA+G+GKS+ + ++     PT+GKV ++GKD  R   + LR  I
Sbjct: 41   QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR-SI 99

Query: 1089 GLV--QQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSAL--PNAYKTPVGE 1144
            GLV  Q+    +     D++   K      E+ +   A  +      L      K PV  
Sbjct: 100  GLVMGQKLQLWWDLPALDSLEVLKL---IYEIPDDEFAERLDFLTEILDLEGFLKWPVR- 155

Query: 1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEAL--ERLMRGRTTVL 1202
               +LS GQ+ R  +A A+L  P +L LDE T  LD  ++  ++E L      R  T +L
Sbjct: 156  ---KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212

Query: 1203 VAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSR 1236
              H    I    D + ++  G++V  G+ ++L  +
Sbjct: 213  TTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247

Length = 325

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 53/232 (22%), Positives = 106/232 (45%), Gaps = 15/232 (6%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E + VT S+    D     + S   P G+   ++G +G+GK+T   +I    +P  G +
Sbjct: 3   LEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAH 483
             +   +        +++IG + +E  L+   T+ + + Y      M + E         
Sbjct: 60  TWNGGPLSQEI----KNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQA-- 113

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
               L       +  ++  +LS G +Q+I    A++  P++L+LDE  S LD  +  +++
Sbjct: 114 ---WLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLK 170

Query: 544 EALDRLMV-GRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELIAKAG 593
           +A+  L   G T +  +HR+  +    D + ++++GQ V  GT E++    G
Sbjct: 171 DAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222

Length = 300

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVV-VAHR 561
           LSGG++QR+A AR +L  PK + LDEATSALD  SE  + + L  L     TV+ V HR
Sbjct: 92  LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG---ITVISVGHR 147

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 30/215 (13%)

Query: 1033 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQ 1092
            L    G+   L+G +G+GK++++  I     P  G V + G    +         IG V 
Sbjct: 1    LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55

Query: 1093 QEPAL---FAASIFDNIAYGKEG----------ATEAEVVEAARAANVHGFVSALPNAYK 1139
            Q       F  S+   +  G+ G          A  A V +A R          L     
Sbjct: 56   QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVG-------LTELAD 108

Query: 1140 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GR 1198
             PVGE    LSGGQ+QR+ +ARA+   P++LLLDE  + LD  ++ +L E    L   G 
Sbjct: 109  RPVGE----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGT 164

Query: 1199 TTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSEL 1233
              ++  H L+         V+ +GR++  G+  +L
Sbjct: 165  AILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQL 199

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 71.8 bits (176), Expect = 3e-13
 Identities = 61/239 (25%), Positives = 111/239 (46%), Gaps = 32/239 (13%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI------- 1076
            ++V   + +      +   ++G SGSGKS+++           G + +   DI       
Sbjct: 38   ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQV--GDIYIGDKKN 95

Query: 1077 ----------RRL-NLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKEGATEAEVVEAAR 1123
                      +++ N K LR ++ +V Q P   LF  +I  +I +G   A   +  EA +
Sbjct: 96   NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPV-ALGVKKSEAKK 154

Query: 1124 AANVHGFVSALPNAY--KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
             A  +     L ++Y  ++P G     LSGGQK+R+AIA  +   P IL+ DE T+ LD 
Sbjct: 155  LAKFYLNKMGLDDSYLERSPFG-----LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDP 209

Query: 1182 ESEC-VLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 1238
            + E  ++Q  L+     +T  ++ H +  +  V D + V+  G+I++ G+  E+ +   
Sbjct: 210  KGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQH 268

Length = 320

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 69.9 bits (172), Expect = 3e-13
 Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 23/174 (13%)

Query: 377 RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL 436
           R   ++F   S    AG+ + + G +GSGK+T++ LI     P AG + LD  DI    +
Sbjct: 12  RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDV 71

Query: 437 RWLRDQIGLVNQ-EPALFATTILENI-----LYGKPEATMAEVEAAASAANAHSFITLLP 490
                 +G  N  +PAL   T+ EN+       G  E    ++ AA  A      +  LP
Sbjct: 72  AEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEEL---DIAAALEAVGLAP-LAHLP 124

Query: 491 NGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 544
            GY          LS GQK+R+A+AR ++ N  I +LDE T+ALDA + ++  E
Sbjct: 125 FGY----------LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168

Length = 207

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 7/212 (3%)

Query: 384 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD-NVDIKTL-QLRWLRD 441
            D S     G+   ++G +G+GK+T++ +I     P  G VL D + D+  L + R  R 
Sbjct: 22  NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81

Query: 442 QIGLVNQEPALF-ATTILEN--ILYGKPEATMAEVEAAASAANAHSFITLLPN-GYSTQV 497
            IG   Q+P +F   T+ EN  +   + ++  A + A   A        LL   G   + 
Sbjct: 82  GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDER 141

Query: 498 GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVV 557
                 LS GQKQ + I   + ++PK+LLLDE  + +         E L  L    + +V
Sbjct: 142 DRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILV 201

Query: 558 VAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
           V H +  +R + D V V+ +G V+  G+ +E+
Sbjct: 202 VEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233

Length = 249

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 73.7 bits (181), Expect = 3e-13
 Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 20/215 (9%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA---GKVMIDGKDIRRLN 1080
             V      +L +R G+   L G +G+GKS+++ ++   Y P     G++   G  ++  N
Sbjct: 13   GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSGSPLKASN 71

Query: 1081 LKSLRLK-IGLVQQEPALFAA-SIFDNIAYGKE----GATEAEVVEAARAANV--HGFVS 1132
            ++      I ++ QE  L    S+ +NI  G E    G   A      RA N+     + 
Sbjct: 72   IRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLD 131

Query: 1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVLQEAL 1191
            A       PVG+ G    GGQ+Q + IA+A+ K   +L+LDE +S+L + E+E +L    
Sbjct: 132  ADNVT--RPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIR 185

Query: 1192 ERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIV 1225
            +    G   V ++H+L+ ++ V D I V++DG+ V
Sbjct: 186  DLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 69.8 bits (171), Expect = 3e-13
 Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 18/189 (9%)

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK--DIRR 1078
             R    +F   +  + AG++  + G +GSGK++++ ++     P AG+V+++G   D +R
Sbjct: 9    ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68

Query: 1079 LNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA 1137
             ++    L +G     P +    S+ +N+ +     ++ +V EA     ++GF       
Sbjct: 69   DSIARGLLYLG---HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR---- 121

Query: 1138 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEAL-ERLMR 1196
               PV     QLS GQ++R+A+AR +L    + +LDE T+ALD        EA+     R
Sbjct: 122  ---PVA----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174

Query: 1197 GRTTVLVAH 1205
            G   VL  H
Sbjct: 175  GGMVVLTTH 183

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 70.2 bits (172), Expect = 3e-13
 Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 30/189 (15%)

Query: 1033 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLRLK-I 1088
            L ++ G++ AL+G SGSGKS+++A++    D ++G+V + G+ + +++ +    LR K +
Sbjct: 31   LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHV 90

Query: 1089 GLVQQE----PALFAASIFDNIAYGK--EGATEAEVVEAARAANVHGFVSALPNAYKTPV 1142
            G V Q     P L A    +N+       G +  +    A+A      +  L       +
Sbjct: 91   GFVFQSFMLIPTLNA---LENVELPALLRGESSRQSRNGAKA-----LLEQLG------L 136

Query: 1143 GER----GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-- 1196
            G+R      QLSGG++QR+A+ARA    P +L  DE T  LD ++   + + L  L R  
Sbjct: 137  GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH 196

Query: 1197 GRTTVLVAH 1205
            G T +LV H
Sbjct: 197  GTTLILVTH 205

Length = 228

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 35/232 (15%)

Query: 1032 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL------------ 1079
            NL +R  +  +L+G +G+GK++V   +  FY PT G +++ G+ I  L            
Sbjct: 25   NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR 84

Query: 1080 NLKSLRLKIGLVQQEPALFA----------ASIFDNIAYGKEGATEAEVVEAARAANVHG 1129
              + +RL   +   E  L A          + +    A+ +    E+E ++  RAA    
Sbjct: 85   TFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRR---AESEALD--RAATWLE 139

Query: 1130 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 1189
             V  L +A +   G     L+ GQ++R+ IAR ++  P IL+LDE  + L+ +    L E
Sbjct: 140  RVGLLEHANR-QAG----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDE 194

Query: 1190 ALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 1238
             +  L      T +L+ H +  + G+ D I VV  G  +  G+  E+ + PD
Sbjct: 195  LIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNPD 246

Length = 255

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 73.5 bits (181), Expect = 4e-13
 Identities = 57/218 (26%), Positives = 102/218 (46%), Gaps = 36/218 (16%)

Query: 393 GKTVAVVGGSGSGKSTVVSLIERFYDPN----AGHVLLDNVDIKTLQLRWLRDQI-GLVN 447
           G+ +AV+G SG+GK+T+++ +  F  P     +G VLL+ + I   ++R     I   V 
Sbjct: 51  GELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPIDAKEMR----AISAYVQ 105

Query: 448 QEPALFAT-TILENILY-------------GKPEATMAEVEAAASAANAHSFITLLPNGY 493
           Q+     T T+ E++++              K E     ++A      A++ I       
Sbjct: 106 QDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRI------- 158

Query: 494 STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL-MVG 552
              V  R   LSGG+++R+A A  +L +P +L  DE TS LD+     V + L  L   G
Sbjct: 159 --GVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216

Query: 553 RTTVVVAHRLST--IRNVDTVAVIQQGQVVETGTHEEL 588
           +T +   H+ S+      D + ++ +G+V   G+ ++ 
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 69.9 bits (172), Expect = 4e-13
 Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 27/220 (12%)

Query: 1028 FK---DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-LKS 1083
            FK   D +L +  G+ + ++G +G+GK++++ +I     P  G V+  G D+  L   + 
Sbjct: 15   FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI 74

Query: 1084 LRLKIGLVQQEPALFAA-SIFDN--IAYGK---------EGATEAEVVEAARAANVHGFV 1131
             R  IG   Q+P +F   ++F+N  +A  +            +  E           G  
Sbjct: 75   ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIG-- 132

Query: 1132 SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVLQEA 1190
              L +      G     LS GQKQ + I   ++++P +LLLDE  + + D E+E    E 
Sbjct: 133  --LADEADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETE-KTAEL 185

Query: 1191 LERLMRGRTTVLVAHRLSTIRGVDC-IGVVQDGRIVEQGS 1229
            L+ L    + V+V H +  +R +   + V+  G ++ +GS
Sbjct: 186  LKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 70.2 bits (172), Expect = 6e-13
 Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 35/235 (14%)

Query: 1022 RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 1081
            R  V   K  +  +R GQ+ A++G +GSGKS++  ++    +PT+G+++ID   +   + 
Sbjct: 23   RQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82

Query: 1082 KSLRLKIGLVQQEPA-----------LFAASIFDNIAYGKEGATEAEVVEAARAANVHGF 1130
                 +I ++ Q+P+           +    +  N     E   E +++E  R       
Sbjct: 83   SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPE-QREKQIIETLRQ------ 135

Query: 1131 VSALPN-AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 1189
            V  LP+ A   P       L+ GQKQR+ +ARA++  P +++ DEA ++LD      ++ 
Sbjct: 136  VGLLPDHASYYPH-----MLAPGQKQRLGLARALILRPKVIIADEALASLDMS----MRS 186

Query: 1190 ALERLM------RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
             L  LM      +G + + V   L  ++ + D + V+  G +VE+GS +++++ P
Sbjct: 187  QLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241

Length = 267

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 70.3 bits (173), Expect = 1e-12
 Identities = 62/205 (30%), Positives = 99/205 (48%), Gaps = 37/205 (18%)

Query: 1042 ALVGASGSGKSSVIALIERFYDPTAGKVMIDGK---DI-RRLNLKSLRLKIGLVQQEPAL 1097
            A+ G SG+GK+S+I  I     P  G+++++G+   D  + + L   + +IG V Q+  L
Sbjct: 28   AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARL 87

Query: 1098 FAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ-------- 1148
            F    +  N+ YG         +  +  A     V+ L           G++        
Sbjct: 88   FPHYKVRGNLRYG---------MAKSMVAQFDKIVALL-----------GIEPLLDRYPG 127

Query: 1149 -LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG-RTTVL-VAH 1205
             LSGG+KQR+AI RA+L  P +LL+DE  ++LD   +  L   LERL R     +L V+H
Sbjct: 128  SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSH 187

Query: 1206 RLSTI-RGVDCIGVVQDGRIVEQGS 1229
             L  I R  D + V++ G++   G 
Sbjct: 188  SLDEILRLADRVVVLEQGKVKAFGP 212

Length = 352

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 71.4 bits (175), Expect = 1e-12
 Identities = 64/238 (26%), Positives = 112/238 (47%), Gaps = 24/238 (10%)

Query: 995  PDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV 1054
             D P  +     +  +ELR+V FAY    +       NL I+ G+   L+G +GSGKS++
Sbjct: 309  ADFPRPQAFPDWKT-LELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTL 365

Query: 1055 IALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGA 1113
              L+   Y P +G++++DGK +    L+  R    L     A+F+   +FD +   +  A
Sbjct: 366  AMLLTGLYQPQSGEILLDGKPVSAEQLEDYR---KLFS---AVFSDYHLFDQLLGPEGKA 419

Query: 1114 TEAEVVEAARAANVHGFVSALPNAYKTPVGERGV---QLSGGQKQRIAIARAVLKNPAIL 1170
            +            +  ++  L  A+KT + +      +LS GQK+R+A+  A+L+   IL
Sbjct: 420  SP---------QLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDIL 470

Query: 1171 LLDEATSALD-AESECVLQEALERLMR-GRTTVLVAHRLSTIRGVDCIGVVQDGRIVE 1226
            +LDE  +  D A      Q  L  L   G+T   ++H        D +  +++G++ E
Sbjct: 471  VLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528

Length = 546

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 71.0 bits (174), Expect = 2e-12
 Identities = 63/229 (27%), Positives = 109/229 (47%), Gaps = 19/229 (8%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA--- 421
           +E K +  ++     V       +    G+ V + G +G+GKST++ ++   Y P+    
Sbjct: 2   LEMKGIVKTFG---GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWD 57

Query: 422 GHVLLDNVDIKTLQLRWL-RDQIGLVNQEPALFAT-TILENILYGK----PEATMAEVEA 475
           G +      +K   +R   R  I +++QE  L    ++ ENI  G     P   MA    
Sbjct: 58  GEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAM 117

Query: 476 AASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD 535
              A N    + L  +  +  VG+ G    GGQ+Q + IA+A+ K  ++L+LDE +S+L 
Sbjct: 118 YLRAKNLLRELQLDADNVTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLT 173

Query: 536 AGSESIVQEALDRLMV-GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVET 582
                I+ + +  L   G   V ++H+L+ ++ V DT+ VI+ GQ V T
Sbjct: 174 EKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVAT 222

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 11/171 (6%)

Query: 376 SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ 435
            R    +F   S    AG+ + V G +GSGK+T++ ++     P AG VLL+   +   +
Sbjct: 9   ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68

Query: 436 LRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYST 495
               R  + L +        ++LEN+ +   + +  +VE A +    + F          
Sbjct: 69  DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVA---- 124

Query: 496 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL 546
                  QLS GQ++R+A+AR +L    + +LDE T+ALD    +   EA+
Sbjct: 125 -------QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 64/220 (29%), Positives = 104/220 (47%), Gaps = 33/220 (15%)

Query: 393 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI---GLVN-- 447
            + V+++G +G+GK+TV + +  FY P  G +LL    I+ L       QI   G+V   
Sbjct: 31  QEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP----GHQIARMGVVRTF 86

Query: 448 QEPALFAT-TILENILYGK---------------PEATMAEVEAAASAANAHSFITLLPN 491
           Q   LF   T++EN+L  +               P    AE EA   AA     + LL +
Sbjct: 87  QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH 146

Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM- 550
             + Q G     L+ GQ++R+ IAR M+  P+IL+LDE  + L+      + E +  L  
Sbjct: 147 A-NRQAG----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN 201

Query: 551 -VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
               T +++ H +  +  + D + V+ QG  +  GT EE+
Sbjct: 202 EHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241

Length = 255

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 71.1 bits (175), Expect = 2e-12
 Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 62/213 (29%)

Query: 368 KNVTFSYPSRPDVIIFRDFSI-FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL 426
             V+   P  P   I +D S+ FFP  K + V+G +G+GKST++ ++       AG    
Sbjct: 8   NRVSKVVP--PKKEILKDISLSFFPGAK-IGVLGLNGAGKSTLLRIM-------AG---- 53

Query: 427 DNVDIKTLQLRWLRD--QIGLVNQEPALFAT-TILENI-------------------LYG 464
             VD +           ++G + QEP L  T T+ EN+                    + 
Sbjct: 54  --VDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA 111

Query: 465 KPEATM-------AEVEAAASAANAHSFITLL---------PNGYSTQVGERGVQLSGGQ 508
           +P+A M       AE++    AA+A      L         P      V +    LSGG+
Sbjct: 112 EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPW-DADVTK----LSGGE 166

Query: 509 KQRIAIARAMLKNPKILLLDEATSALDAGSESI 541
           ++R+A+ R +L  P +LLLDE T+ LDA  ES+
Sbjct: 167 RRRVALCRLLLSKPDMLLLDEPTNHLDA--ESV 197

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 52/222 (23%), Positives = 106/222 (47%), Gaps = 8/222 (3%)

Query: 387 SIFFPA--GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 444
            + F A  G+ V  +G +G+GKST + +I  +  P++G V +   D+       ++  IG
Sbjct: 20  EVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQRNIG 78

Query: 445 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQL 504
            + +   L+    +   L  +  A +  ++           I L+  G   +  ++  QL
Sbjct: 79  YLPEHNPLYLDMYVREYL--QFIAGIYGMKGQLLKQRVEEMIELV--GLRPEQHKKIGQL 134

Query: 505 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLST 564
           S G +QR+ +A+A++ +PK+L+LDE T+ LD      ++  +  +   +T ++  H +  
Sbjct: 135 SKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQE 194

Query: 565 IRNV-DTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMV 605
           +  + D V +I +G++V     +EL A        + F+E +
Sbjct: 195 VEAICDRVIIINKGKIVADKKLDELSAANKKQVIEVEFEEQI 236

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 74/253 (29%), Positives = 121/253 (47%), Gaps = 37/253 (14%)

Query: 1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKS-SVIALIERFYDP--TAGKVM 1070
             V F+ P   DV    D N  +RAG++  +VG SGSGKS +  AL+          G   
Sbjct: 19   RVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT 77

Query: 1071 IDGKDIRRLNLKSL-RL---KIGLVQQEPALFAASIFDNIAYGKE---------GATEAE 1117
             +G++I  L  K L +L   +I ++ Q+P     S+   +  G++         G ++AE
Sbjct: 78   FNGREILNLPEKELNKLRAEQISMIFQDPM---TSLNPYMRVGEQLMEVLMLHKGMSKAE 134

Query: 1118 VVEAARAANVHGFVSALPNAYKTPVGERGVQL-----SGGQKQRIAIARAVLKNPAILLL 1172
              E +        V  L +A K P   + +++     SGG +QR+ IA A+L  P +L+ 
Sbjct: 135  AFEES--------VRML-DAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIA 185

Query: 1173 DEATSALDAESECVLQEALERLMRGRTT--VLVAHRLSTIRGV-DCIGVVQDGRIVEQGS 1229
            DE T+ALD   +  +   L  L R   T  +++ H L  + G+ D + V+  GR +E G+
Sbjct: 186  DEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245

Query: 1230 HSELVSRPDGAYS 1242
              ++  +P   YS
Sbjct: 246  ARDVFYQPSHPYS 258

Length = 330

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 69.5 bits (171), Expect = 3e-12
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 22/180 (12%)

Query: 364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
            ++ + V  SY  +  VI   D  +    G+ + +VG SG GKST++ ++       +G 
Sbjct: 3   GLKLQAVRKSYDGKTQVIKGIDLDV--ADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE 60

Query: 424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG-K----PEATMAE-VEAA 476
           + +    +  L+    RD I +V Q  AL+   ++ EN+ YG K    P+A + E V  A
Sbjct: 61  IWIGGRVVNELEPA-DRD-IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEA 118

Query: 477 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
           A        +   P            +LSGGQ+QR+A+ RA+++ P + L DE  S LDA
Sbjct: 119 ARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA 167

Length = 356

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 67.9 bits (166), Expect = 3e-12
 Identities = 56/212 (26%), Positives = 103/212 (48%), Gaps = 29/212 (13%)

Query: 392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQIGLVNQEP 450
           AG+ + +VG +G+GKST+++ +       +G +      ++      L R +  L  Q+ 
Sbjct: 24  AGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQT 82

Query: 451 ALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ 510
             FA  +   +   +P+ T  E       A A +    L    +        QLSGG+ Q
Sbjct: 83  PPFAMPVWHYLTLHQPDKTRTE--LLNDVAGALALDDKLGRSTN--------QLSGGEWQ 132

Query: 511 RIAIARAMLK-----NP--KILLLDEATSALDAGSESIVQEALDRLMV-----GRTTVVV 558
           R+ +A  +L+     NP  ++LLLDE  ++LD   +S    ALDRL+      G   V+ 
Sbjct: 133 RVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQS----ALDRLLSALCQQGLAIVMS 188

Query: 559 AHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 589
           +H L+ T+R+     ++++G+++ +G  EE++
Sbjct: 189 SHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220

Length = 248

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 70.3 bits (173), Expect = 3e-12
 Identities = 63/248 (25%), Positives = 121/248 (48%), Gaps = 59/248 (23%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA--- 421
           +E KN+T ++     V    + S+   AG+ V++ G +G+GKST++ ++   Y P+    
Sbjct: 6   LEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYE 61

Query: 422 GHVLLDNVDIKTLQLRWLRDQ----IGLVNQEPALFAT-TILENI--------------- 461
           G ++ +    + LQ   +RD     I +++QE AL    ++LENI               
Sbjct: 62  GEIIFEG---EELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYD 118

Query: 462 -LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK 520
            +Y + +  +A+++   + A              T VG     L  GQ+Q + IA+A+ K
Sbjct: 119 AMYLRAQKLLAQLKLDINPA--------------TPVGN----LGLGQQQLVEIAKALNK 160

Query: 521 NPKILLLDEATSALDAGSE-----SIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVI 574
             ++L+LDE T++L   SE      I+++       G   + ++H+L+ ++ + DT+ VI
Sbjct: 161 QARLLILDEPTASLTE-SETAVLLDIIRDLKAH---GIACIYISHKLNEVKAISDTICVI 216

Query: 575 QQGQVVET 582
           + G+ + T
Sbjct: 217 RDGRHIGT 224

Length = 506

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 66.0 bits (162), Expect = 3e-12
 Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 6/60 (10%)

Query: 1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR-TTVL-VAHR 1206
            LSGG++QR+A AR +L  P  + LDEATSALD ESE    + L +L++    TV+ V HR
Sbjct: 92   LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESE----DRLYQLLKELGITVISVGHR 147

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 19/177 (10%)

Query: 376 SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ 435
           SR + ++F   S    AG+ + V G +G GK+T++ ++     P++G V  +   +   +
Sbjct: 9   SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68

Query: 436 LRWLRDQIGLVNQEPALFAT-TILENILY----GKPEATMAEVEAAASAANAHSFITLLP 490
               R  I  +   P L    + LEN+ +             +E A +A     F  L  
Sbjct: 69  DEPHR-NILYLGHLPGLKPELSALENLHFWAAIHGGAQRT--IEDALAAVGLTGFEDLPA 125

Query: 491 NGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALD 547
                       QLS GQ++R+A+AR  L    + +LDE T+ALD    +++   L 
Sbjct: 126 A-----------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLR 171

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 70.6 bits (173), Expect = 3e-12
 Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 30/199 (15%)

Query: 1026 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF--------YDPTAGKVMIDGKDIR 1077
             V ++ NL I+ G   A+VG SG+GK++++ +I           Y P +GKV +    + 
Sbjct: 397  YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS 456

Query: 1078 RLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA 1137
             L              EP     +I +++      +   ++  A    N  G   A+   
Sbjct: 457  ALIPGEY---------EPEFGEVTILEHL-----RSKTGDLNAAVEILNRAGLSDAV--L 500

Query: 1138 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR- 1196
            Y+    E    LS GQK+R  +A+ + + P +LL+DE  + LD  +   +   +  L R 
Sbjct: 501  YRRKFSE----LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE 556

Query: 1197 -GRTTVLVAHRLSTIRGVD 1214
             G T ++V HR      + 
Sbjct: 557  AGITLIVVTHRPEVGNALR 575

Length = 593

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 66.7 bits (163), Expect = 4e-12
 Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 10/148 (6%)

Query: 393 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLRWLRDQ-IGLVNQ 448
           G+T+A++G SGSGKST+++++    D ++G V L    +  +       LR + +G V Q
Sbjct: 36  GETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQ 95

Query: 449 EPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG 507
              L  T   LEN+    P     E     S   A + +  L  G   ++     QLSGG
Sbjct: 96  SFMLIPTLNALENVEL--PALLRGESSRQ-SRNGAKALLEQL--GLGKRLDHLPAQLSGG 150

Query: 508 QKQRIAIARAMLKNPKILLLDEATSALD 535
           ++QR+A+ARA    P +L  DE T  LD
Sbjct: 151 EQQRVALARAFNGRPDVLFADEPTGNLD 178

Length = 228

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 65.5 bits (161), Expect = 5e-12
 Identities = 43/207 (20%), Positives = 84/207 (40%), Gaps = 50/207 (24%)

Query: 383 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR-WLRD 441
            RD S    AG+ V + G  G+G++ +   +     P +G + LD   +     R  +R 
Sbjct: 16  VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75

Query: 442 QIGLVNQEP---ALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV 497
            I  V ++     L    ++ ENI                          L         
Sbjct: 76  GIAYVPEDRKREGLVLDLSVAENI-------------------------AL--------- 101

Query: 498 GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVV 557
                 LSGG +Q++ +AR + ++P++L+LDE T  +D G+++ +   +  L      V+
Sbjct: 102 ---SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158

Query: 558 VAHRLST-----IRNVDTVAVIQQGQV 579
           +   +S+     +   D + V+ +G++
Sbjct: 159 L---ISSELDELLGLCDRILVMYEGRI 182

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 69.5 bits (170), Expect = 6e-12
 Identities = 66/258 (25%), Positives = 113/258 (43%), Gaps = 49/258 (18%)

Query: 362 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 421
           N NI F         +  +   R+ S     G+T+A+VG SGSGKS     + R  +   
Sbjct: 17  NLNIAFMQ------EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAG 70

Query: 422 GHV-------------LLDNVDIKTLQLRWLRD-QIGLVNQEP-----ALFAT--TILEN 460
           G V             +++  +    Q+R +R   + ++ QEP      +F     I E+
Sbjct: 71  GLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAES 130

Query: 461 IL----YGKPEATMAEVEAAASAA---NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIA 513
           I       + EA M E +          A + ++  P+           QLSGG +QR+ 
Sbjct: 131 IRLHQGASREEA-MVEAKRMLDQVRIPEAQTILSRYPH-----------QLSGGMRQRVM 178

Query: 514 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DT 570
           IA A+   P +L+ DE T+ALD   ++ + + +  L   +    + + H +  +  + D 
Sbjct: 179 IAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADR 238

Query: 571 VAVIQQGQVVETGTHEEL 588
           V V+ QG+ VETG+ E++
Sbjct: 239 VLVMYQGEAVETGSVEQI 256

Length = 623

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 69.6 bits (171), Expect = 6e-12
 Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 50/221 (22%)

Query: 1018 AYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM--IDGKD 1075
              P  P   + KD +L    G    ++G +G+GKS+++            ++M  +D K+
Sbjct: 13   VVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLL------------RIMAGVD-KE 57

Query: 1076 IRRLNLKSLRLKIGLVQQEPAL-FAASIFDNI-------------------AYGKEGA-- 1113
                   +  +K+G + QEP L    ++ +N+                    + +  A  
Sbjct: 58   FNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADM 117

Query: 1114 -----TEAEVVEAARAANVHGFVSALP---NAYKTPVGERGVQ-LSGGQKQRIAIARAVL 1164
                  +AE+ E   AA+       L    +A + P  +  V  LSGG+++R+A+ R +L
Sbjct: 118  DALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLL 177

Query: 1165 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 1205
              P +LLLDE T+ LDAES   L++ L+    G T V V H
Sbjct: 178  SKPDMLLLDEPTNHLDAESVAWLEQHLQEY-PG-TVVAVTH 216

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 63/233 (27%), Positives = 98/233 (42%), Gaps = 41/233 (17%)

Query: 1016 DFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD 1075
                    +V   K  +  I  G+    +G +G+GK++ + ++     PT+G+V + G  
Sbjct: 25   SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV 84

Query: 1076 --IRRLNLKSLRLKIGLV--QQE------PAL----FAASIFDNIAYGKEGATEAEVVEA 1121
               RR        +IG+V  Q+       P +      A+I+D +   +      E+ E 
Sbjct: 85   PWKRRKKFLR---RIGVVFGQKTQLWWDLPVIDSFYLLAAIYD-LPPARFKKRLDELSEL 140

Query: 1122 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
                 +            TPV  R  QLS GQ+ R  IA A+L  P IL LDE T  LD 
Sbjct: 141  LDLEEL----------LDTPV--R--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186

Query: 1182 ESECVLQEALERLMRGR-TTV-LVAHRLSTI----RGVDCIGVVQDGRIVEQG 1228
             ++  ++  L+   R R TTV L +H +  I    R V  I     GR++  G
Sbjct: 187  VAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID---KGRLLYDG 236

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 69.2 bits (170), Expect = 7e-12
 Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 33/261 (12%)

Query: 989  RSTRIDPDDPDAEPVETIRG--EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGA 1046
                + P   +    +       +ELR+V FAY      V     NL I+ G+   L+G 
Sbjct: 300  NKLALAPYKAEFPRPQAFPDWQTLELRNVTFAYQDNGFSV--GPINLTIKRGELLFLIGG 357

Query: 1047 SGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-----S 1101
            +GSGKS++  L+   Y P +G++++DGK +     +  R           LF+A      
Sbjct: 358  NGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYR----------KLFSAVFTDFH 407

Query: 1102 IFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGE---RGVQLSGGQKQRIA 1158
            +FD +  G EG       + A  A V  ++  L  A+K  + +     ++LS GQK+R+A
Sbjct: 408  LFDQL-LGPEG-------KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLA 459

Query: 1159 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCI 1216
            +  A+ +   ILLLDE  +  D        + L  L++  G+T   ++H        D +
Sbjct: 460  LLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRL 519

Query: 1217 GVVQDGRIVE-QGSHSELVSR 1236
              +++G++ E  G   +  SR
Sbjct: 520  LEMRNGQLSELTGEERDAASR 540

Length = 547

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 66.8 bits (163), Expect = 8e-12
 Identities = 73/254 (28%), Positives = 111/254 (43%), Gaps = 42/254 (16%)

Query: 1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVI-ALIERFYDPTA------ 1066
            H+  A   R    + +D +LRI  G+  AL+G +G+GKS+++ AL        A      
Sbjct: 6    HLHVARRHR---AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARV 62

Query: 1067 -GKVMIDGKDIRRLNLKSL-RLKIGLVQQEPALFAASIFDNIAYG------KEGATEAEV 1118
             G V ++G+ +  ++   L RL+  L Q     FA S  + +  G      + GA     
Sbjct: 63   TGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRD 122

Query: 1119 VEAARAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLK---------NPA 1168
             E A          AL  A  T +  R V  LSGG+  R+  AR + +          P 
Sbjct: 123  GEIAWQ--------ALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPR 174

Query: 1169 ILLLDEATSALDAESECVLQEALERLMR----GRTTVLVAHRLSTIRGVDCIGVVQDGRI 1224
             LLLDE T+ALD   +  L + + RL R    G   ++    L+  R  D I ++ DG I
Sbjct: 175  YLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAI 233

Query: 1225 VEQGSHSELVSRPD 1238
            V  G+ ++ V  P 
Sbjct: 234  VAHGAPAD-VLTPA 246

Length = 272

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 68.3 bits (168), Expect = 1e-11
 Identities = 63/276 (22%), Positives = 120/276 (43%), Gaps = 55/276 (19%)

Query: 983  VFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQA 1042
            V   L+      P++   EPV  +R             S       +D +  +RAG+   
Sbjct: 243  VGRELEDLFPEPPEEGIGEPVLEVRNL-----------SGGGK--VRDVSFTVRAGEILG 289

Query: 1043 LVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-LKSLRLKIGLV----QQEPAL 1097
            + G  G+G++ +   +      ++G++++DGK +R  +   +++  I  V    + E  +
Sbjct: 290  IAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLV 349

Query: 1098 FAASIFDNIA----------YGKEGATEAEVVEAARAA-NVHGFVSALPNAYKTPVGERG 1146
               SI +NI              +   E  + E       +           KTP  E+ 
Sbjct: 350  LDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI-----------KTPSPEQP 398

Query: 1147 VQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALD--AESECVLQEALERLMR-----GR 1198
            +  LSGG +Q++ +AR +  +P +L+LDE T  +D  A++E      + RL+R     G+
Sbjct: 399  IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAE------IYRLIRELAAEGK 452

Query: 1199 TTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSEL 1233
              ++++  L  + G+ D I V+++GRIV +    E 
Sbjct: 453  AILMISSELPELLGLSDRILVMREGRIVGELDREEA 488

Length = 500

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 39/188 (20%)

Query: 382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL----DNVDIKTLQLR 437
           + R+ S+   AG+ V + G SGSGKST++  +   Y P+ G +L+    + VD+ T + R
Sbjct: 26  VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85

Query: 438 WL----RDQIGLVNQ-------EPAL--FATTILENILYGKPEATMAEVEAAASAANAHS 484
            +    R  IG V+Q         AL   A  +L              V    + A A  
Sbjct: 86  EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR-----------GVPREVARAKAAD 134

Query: 485 FITLLPNGYSTQVGERGVQL-----SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
            +T L       + ER   L     SGG++QR+ IAR  + +  ILLLDE T++LDA + 
Sbjct: 135 LLTRL------NLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNR 188

Query: 540 SIVQEALD 547
           ++V E + 
Sbjct: 189 AVVVELIR 196

Length = 235

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 68.2 bits (168), Expect = 1e-11
 Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 62/213 (29%)

Query: 368 KNVTFSYPSRPDVIIFRDFSI-FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL 426
             V+   P  P   I +D S+ FFP  K + V+G +G+GKST++ ++       AG    
Sbjct: 10  NRVSKVVP--PKKQILKDISLSFFPGAK-IGVLGLNGAGKSTLLRIM-------AG---- 55

Query: 427 DNVDIKTLQLRWLRD--QIGLVNQEPALFAT-TILENI-------------------LYG 464
             VD +           ++G + QEP L    T+ EN+                    Y 
Sbjct: 56  --VDKEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYA 113

Query: 465 KPEAT-------MAEVEAAASAANAH---SFITL------LPNGYSTQVGERGVQLSGGQ 508
           +P+A          E++    AA+A    S + +       P     +V     +LSGG+
Sbjct: 114 EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW-DAKVT----KLSGGE 168

Query: 509 KQRIAIARAMLKNPKILLLDEATSALDAGSESI 541
           ++R+A+ R +L+ P +LLLDE T+ LDA  ES+
Sbjct: 169 RRRVALCRLLLEKPDMLLLDEPTNHLDA--ESV 199

Length = 556

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 65.7 bits (161), Expect = 2e-11
 Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 14/215 (6%)

Query: 384 RDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI 443
            D S++   G+   ++G +G+GK+T++ +I     P+ G VL    D+          QI
Sbjct: 19  NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDL----TGLPEHQI 74

Query: 444 -----GLVNQEPALF-ATTILEN--ILYGKPEATMAEVEAAASAANAHSFITLLPN-GYS 494
                G   Q+P +F   T+ EN  +   + ++  A +    SA        +L   G +
Sbjct: 75  ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA 134

Query: 495 TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRT 554
            +       LS GQKQ + I   ++++PK+LLLDE  + +         E L  L    +
Sbjct: 135 DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHS 194

Query: 555 TVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
            VVV H +  +R++ D V V+ QG V+  G+ +++
Sbjct: 195 VVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQV 229

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 51/196 (26%), Positives = 86/196 (43%), Gaps = 30/196 (15%)

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
            SR + ++F+  +  + AG++  + G +G GK++++ ++     P +G+V  +G  +    
Sbjct: 9    SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68

Query: 1081 LKSLR----------LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGF 1130
             +  R          LK  L   E   F A+I         G  +  + +A  A  + GF
Sbjct: 69   DEPHRNILYLGHLPGLKPELSALENLHFWAAIH--------GGAQRTIEDALAAVGLTGF 120

Query: 1131 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA 1190
                      P      QLS GQ++R+A+AR  L    + +LDE T+ALD     +L   
Sbjct: 121  E-------DLPAA----QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGL 169

Query: 1191 LE-RLMRGRTTVLVAH 1205
            L   L RG   +L  H
Sbjct: 170  LRAHLARGGIVLLTTH 185

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 54/231 (23%)

Query: 367 FKNVTFSYPSRPDVI-IFRDFSIFFPAGKTVAVVGGSGSGKST----VVSLIERFYDPNA 421
           ++N++F+       I I +DFS     G+ V V+G  GSG ST    + +  E       
Sbjct: 6   WRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVE- 64

Query: 422 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAA 480
           G +  + +  K    ++  + I  V++E   F T T+ E +            + A    
Sbjct: 65  GDIHYNGIPYKEFAEKYPGEII-YVSEEDVHFPTLTVRETL------------DFALRC- 110

Query: 481 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
             + F+             RG+  SGG+++R++IA A++    +L  D +T  LD+ +  
Sbjct: 111 KGNEFV-------------RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST-- 153

Query: 541 IVQEALDRLMVGRTTVVVAHRLSTI-----------RNVDTVAVIQQGQVV 580
               AL+ L   RT   V  + +T               D V V+ +G+ +
Sbjct: 154 ----ALEILKCIRTMADVL-KTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 67.5 bits (165), Expect = 3e-11
 Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 25/224 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E +NV F+Y    +       ++    G+ V ++GG+GSGKST+  L+   Y P +G +
Sbjct: 323 LELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380

Query: 425 LLDN--VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANA 482
           LLD   V  + L+     D   L +   A+F+   L + L G         E  AS    
Sbjct: 381 LLDGKPVSAEQLE-----DYRKLFS---AVFSDYHLFDQLLGP--------EGKASPQLI 424

Query: 483 HSFITLLPNGYSTQVGERGV---QLSGGQKQRIAIARAMLKNPKILLLDEATSALD-AGS 538
             ++  L   + T + +      +LS GQK+R+A+  A+L+   IL+LDE  +  D A  
Sbjct: 425 EKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFR 484

Query: 539 ESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVE 581
               Q  L  L   G+T   ++H      + D +  ++ GQ+ E
Sbjct: 485 REFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528

Length = 546

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 66.9 bits (164), Expect = 4e-11
 Identities = 59/246 (23%), Positives = 109/246 (44%), Gaps = 37/246 (15%)

Query: 366 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 425
            F  +  ++P    V    D S    AG+  A++G +G+GKST++ ++   Y P+AG +L
Sbjct: 6   SFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL 62

Query: 426 LDNVDIKTLQLRWLRDQ----IGLVNQE----PALFATTILENILYGKPEATM-----AE 472
           +D    + ++           + ++ QE    P +   T+ EN+  G+            
Sbjct: 63  IDG---QEMRFASTTAALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRL 116

Query: 473 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 532
           +   A     H  + + P+   T +      LS GQ+Q + IA+A+ +N +++  DE TS
Sbjct: 117 LNYEAREQLEHLGVDIDPD---TPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTS 169

Query: 533 ALDAGSESIVQEALDRLMV-GRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETG------T 584
           +L A     +   +  L   GR  + V+HR+  I    D + V + G+ V T        
Sbjct: 170 SLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVD 229

Query: 585 HEELIA 590
            ++L+ 
Sbjct: 230 RDQLVQ 235

Length = 501

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 65.2 bits (159), Expect = 4e-11
 Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 28/209 (13%)

Query: 1038 GQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG-------- 1089
            G+    +G +G+GKS+ + +I  +  P +G V + G+D+ + N K ++  IG        
Sbjct: 28   GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHNPL 86

Query: 1090 ---LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERG 1146
               +  +E   F A I     YG +G    + VE          V   P  +K  +G   
Sbjct: 87   YLDMYVREYLQFIAGI-----YGMKGQLLKQRVEEMIE-----LVGLRPEQHKK-IG--- 132

Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHR 1206
             QLS G +QR+ +A+A++ +P +L+LDE T+ LD      ++  ++ + + +T +L  H 
Sbjct: 133  -QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHI 191

Query: 1207 LSTIRGV-DCIGVVQDGRIVEQGSHSELV 1234
            +  +  + D + ++  G+IV      EL 
Sbjct: 192  MQEVEAICDRVIIINKGKIVADKKLDELS 220

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 65.9 bits (161), Expect = 4e-11
 Identities = 68/246 (27%), Positives = 107/246 (43%), Gaps = 41/246 (16%)

Query: 369 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN---AGHVL 425
            VTFS P   DV    D +    AG+T+ +VG SGSGKS     +      N    G   
Sbjct: 19  RVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT 77

Query: 426 LDNVDIKTL---QLRWLR-DQIGLVNQEPALFATTI---------LENIL-----YGKPE 467
            +  +I  L   +L  LR +QI ++ Q+P    T++         L  +L       K E
Sbjct: 78  FNGREILNLPEKELNKLRAEQISMIFQDPM---TSLNPYMRVGEQLMEVLMLHKGMSKAE 134

Query: 468 ATMAEVEA--AASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKIL 525
           A    V    A     A   + + P+           + SGG +QR+ IA A+L  PK+L
Sbjct: 135 AFEESVRMLDAVKMPEARKRMKMYPH-----------EFSGGMRQRVMIAMALLCRPKLL 183

Query: 526 LLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVET 582
           + DE T+ALD   ++ +   L+ L        +++ H L  +  + D V V+  G+ +E 
Sbjct: 184 IADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243

Query: 583 GTHEEL 588
           G   ++
Sbjct: 244 GNARDV 249

Length = 330

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 67.3 bits (164), Expect = 5e-11
 Identities = 52/206 (25%), Positives = 96/206 (46%), Gaps = 18/206 (8%)

Query: 1031 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 1090
             N+     Q  A +G +G+GK++ ++++     PT+G V++ GKDI   NL ++R  +G+
Sbjct: 949  LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGM 1007

Query: 1091 VQQEPALF-----AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGER 1145
              Q   LF     A  I            EA++   A   +                 E 
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLED---------TGLHHKRNEE 1058

Query: 1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 1205
               LSGG ++++++A A + +  +++LDE TS +D  S   + + L +   GRT ++  H
Sbjct: 1059 AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTH 1118

Query: 1206 RL--STIRGVDCIGVVQDGRIVEQGS 1229
             +  + + G D I ++  GR+   G+
Sbjct: 1119 HMDEADLLG-DRIAIISQGRLYCSGT 1143

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 64.2 bits (157), Expect = 5e-11
 Identities = 59/213 (27%), Positives = 105/213 (49%), Gaps = 31/213 (14%)

Query: 392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG-LVNQEP 450
           AG+ + +VG +G+GKST+++ +     P +G +      ++      L      L  Q+ 
Sbjct: 21  AGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQT 79

Query: 451 ALFATTILENI-LYGKPEATMAEVEAAAS-AANAHSFITLLPNGYSTQVGERGVQLSGGQ 508
             FA  + + + L+   +     V +A +  A A      L    S        QLSGG+
Sbjct: 80  PPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGR--SVN------QLSGGE 131

Query: 509 KQRIAIARAMLK-----NP--KILLLDEATSALDAGSESIVQE-ALDRLMV-----GRTT 555
            QR+ +A  +L+     NP  ++LLLDE  ++LD     + Q+ ALDRL+      G   
Sbjct: 132 WQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-----VAQQAALDRLLSELCQQGIAV 186

Query: 556 VVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEE 587
           V+ +H L+ T+R+ D V +++QG+++ +G  +E
Sbjct: 187 VMSSHDLNHTLRHADRVWLLKQGKLLASGRRDE 219

Length = 248

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 66.2 bits (162), Expect = 6e-11
 Identities = 66/230 (28%), Positives = 106/230 (46%), Gaps = 31/230 (13%)

Query: 1032 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 1091
            +L + AG S A VGA+GSGKS++   +       +G+       I RL+ + L+    LV
Sbjct: 23   SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ---KLV 79

Query: 1092 QQEPALFAASIFDNIAYGKE--GATEAEVV-----EAARA---ANVHGFVSALPNAYKTP 1141
              E   +  +  D ++ G++  G T AE++     + AR    A   G  + L   +K  
Sbjct: 80   SDE---WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFK-- 134

Query: 1142 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTT 1200
                   LS G+ ++  + +A++  P +L+LDE    LD  S   L E L  L + G T 
Sbjct: 135  ------YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITL 188

Query: 1201 VLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 1249
            VLV +R   I   V   GV+ D  + E G   E++ +     + + QL H
Sbjct: 189  VLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ-----ALVAQLAH 233

Length = 490

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 61.6 bits (149), Expect = 6e-11
 Identities = 34/179 (18%), Positives = 59/179 (32%), Gaps = 58/179 (32%)

Query: 393 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPAL 452
           G+ + +VG  GSGK+T+   + R   P  G V+  + +    ++      I         
Sbjct: 2   GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII-------- 53

Query: 453 FATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI 512
                                                       VG +    SG  + R+
Sbjct: 54  --------------------------------------------VGGKKASGSGELRLRL 69

Query: 513 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV------GRTTVVVAHRLSTI 565
           A+A A    P +L+LDE TS LDA  E+++    +  ++         TV++       
Sbjct: 70  ALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 66.0 bits (161), Expect = 7e-11
 Identities = 57/240 (23%), Positives = 112/240 (46%), Gaps = 39/240 (16%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           I    +  S+     V   +  ++    G+  A++G +G+GKST++ ++   ++P  G +
Sbjct: 6   ISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62

Query: 425 LLDNVDIKTLQLRWLRDQ--IGLVNQEPALF-ATTILENILYGK---------PEATMAE 472
            ++N++   L  + L  Q  IG++ QE ++    T+LEN+  G+               E
Sbjct: 63  TINNINYNKLDHK-LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWRE 121

Query: 473 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 532
           +   A+       + LL  G    + E+   LS   KQ + IA+ ++ + K++++DE TS
Sbjct: 122 MRVRAA-------MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTS 174

Query: 533 ALDAGSESIVQEALDRLMV--------GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG 583
                  S+  + +D L +        G   V ++H+L+ IR + D   V++ G  V +G
Sbjct: 175 -------SLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227

Length = 510

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 65.6 bits (161), Expect = 8e-11
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 23/213 (10%)

Query: 392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT----LQLRWL-------- 439
           AG+ V + G +G+G+S +V  I     P +G +LL+  D+       + R L        
Sbjct: 283 AGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPED 342

Query: 440 RDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFIT---LLPNGYSTQ 496
           R   GLV     L    +L      KP +    ++  A    A   I    +        
Sbjct: 343 RHGHGLVLDLS-LAENLVL-GRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP 400

Query: 497 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL-MVGRTT 555
                  LSGG +Q++ +AR + + P +L+  + T  LD G+   + E L  L   G+  
Sbjct: 401 AR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAV 456

Query: 556 VVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEE 587
           ++++  L  I  + D +AVI +G++V     EE
Sbjct: 457 LLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489

Length = 501

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 66.1 bits (161), Expect = 8e-11
 Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 29/226 (12%)

Query: 393 GKTVAVVGGSGSGKSTVVSLIE-RFYDPN-AGHVLLDNVDIKTLQLRWLRDQIGLVNQEP 450
           G+ +AV+G SGSGKST+++ +  R    N  G +L +N       L+    + G V Q+ 
Sbjct: 94  GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK----RTGFVTQDD 149

Query: 451 ALFA-TTILENILYGK----PEATMAEVEAAASAANAHSFITLL--PNGYSTQVGE---R 500
            L+   T+ E +++      P++   + +       A S I+ L      +T +G    R
Sbjct: 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILV----AESVISELGLTKCENTIIGNSFIR 205

Query: 501 GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTTVVVA 559
           G+  SGG+++R++IA  ML NP +L+LDE TS LDA +   +V         G+T V   
Sbjct: 206 GI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSM 263

Query: 560 HRLST--IRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQE 603
           H+ S+   +  D+V V+ +G+ +  G   +    A AY   + F  
Sbjct: 264 HQPSSRVYQMFDSVLVLSEGRCLFFGKGSD----AMAYFESVGFSP 305

Length = 659

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 60.9 bits (149), Expect = 9e-11
 Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 6/60 (10%)

Query: 1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG--RTTVLVAH 1205
            QLSGG+K R+A+A+ +L+NP +LLLDE T+ LD ES     EALE  ++    T +LV+H
Sbjct: 70   QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES----IEALEEALKEYPGTVILVSH 125

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 63.2 bits (154), Expect = 9e-11
 Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 35/205 (17%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            + L +V  ++  R    V  D +L ++ G+   L+G +G+GKS+++ ++     P  G +
Sbjct: 5    VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQ----EPAL-FAASIFDNIAYGKEGATEAEVVEAARA 1124
              +GK           L+IG V Q    +  L    + F  +  G +       ++  +A
Sbjct: 62   KRNGK-----------LRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA 110

Query: 1125 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 1184
             ++             P+     +LSGG+ QR+ +ARA+L  P +L+LDE T  +D   +
Sbjct: 111  GHLIDA----------PMQ----KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQ 156

Query: 1185 CVLQEALERLMR--GRTTVLVAHRL 1207
              L + +++L R      ++V+H L
Sbjct: 157  VALYDLIDQLRRELDCAVLMVSHDL 181

Length = 251

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 39/241 (16%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +  +NV+ S+  R    +  D S+    GK + ++G +G+GKST+V ++     P+ G +
Sbjct: 5   VSLENVSVSFGQRR---VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTIL--ENILYGKPEATMAEVEAAASAANA 482
                  +  +LR     IG V Q+  L  T  L     L  +P     ++  A     A
Sbjct: 62  ------KRNGKLR-----IGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA 110

Query: 483 HSFITLLPNGYSTQVGERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 541
              I            +  +Q LSGG+ QR+ +ARA+L  P++L+LDE T  +D   +  
Sbjct: 111 GHLI------------DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA 158

Query: 542 VQEALDRLM--VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGT------HEELIAKA 592
           + + +D+L   +    ++V+H L  +    D V  +    +  +GT      H E I+  
Sbjct: 159 LYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLHPEFISMF 217

Query: 593 G 593
           G
Sbjct: 218 G 218

Length = 251

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 63.6 bits (155), Expect = 2e-10
 Identities = 64/233 (27%), Positives = 108/233 (46%), Gaps = 29/233 (12%)

Query: 1034 RIRAGQSQALVGASGSGKS----SVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089
             ++ G+   +VG SGSGKS    +++ LI+      A K+  +G+D++R++ K  R  +G
Sbjct: 29   SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVG 88

Query: 1090 ----LVQQEPAL-------FAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAY 1138
                ++ Q+P             I + I   + G  +       RA ++   V  +P+  
Sbjct: 89   AEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTR---RQRAIDLLNQV-GIPD-- 142

Query: 1139 KTPVGERGV---QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 1195
              P     V   QLSGG  QR+ IA A+   P +L+ DE T+ALD   +  + E L  L 
Sbjct: 143  --PASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQ 200

Query: 1196 RGRTT--VLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 1245
            +      VL+ H L+ +      I V+  G++VE G   ++   P   Y++ L
Sbjct: 201  QKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQAL 253

Length = 326

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 66/231 (28%), Positives = 99/231 (42%), Gaps = 41/231 (17%)

Query: 379 DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLI--ERFYDPNAGHVLLDNVDIKTL-- 434
           D  I +  ++    G+  A++G +GSGKST+   I     Y+  +G +L    D+  L  
Sbjct: 12  DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71

Query: 435 QLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS---------- 484
             R  R  + L  Q P        E I    P  +  E     SA NA            
Sbjct: 72  DER-ARAGLFLAFQYP--------EEI----PGVSNLEF--LRSALNARRSARGEEPLDL 116

Query: 485 --FITLLPN-----GYSTQVGERGVQ--LSGGQKQRIAIARAMLKNPKILLLDEATSALD 535
             F+ LL       G   +   R V    SGG+K+R  I +  L  PK+ +LDE  S LD
Sbjct: 117 LDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLD 176

Query: 536 AGSESIVQEALDRLMV-GRTTVVVAH--RLSTIRNVDTVAVIQQGQVVETG 583
             +  IV E ++RL    R+ +++ H  RL      D V V+  G++V++G
Sbjct: 177 IDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 60.7 bits (148), Expect = 3e-10
 Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 54/185 (29%)

Query: 1035 IRAGQSQALVGASGSGKSS---VIA------LIERFYDPTAGKVMIDGKDIRRLNLKSLR 1085
            ++ G   AL+G SG+GK++   V+A      +I        G+++I+G+ +     K+ +
Sbjct: 30   VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT-------GEILINGRPLD----KNFQ 78

Query: 1086 LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGER 1145
               G V+Q+                       V EA R      F + L          R
Sbjct: 79   RSTGYVEQQDVHSP---------------NLTVREALR------FSALL----------R 107

Query: 1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-MRGRTTVLVA 1204
            G  LS  Q++R+ I   +   P+IL LDE TS LD+++   +   L++L   G+  +   
Sbjct: 108  G--LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTI 165

Query: 1205 HRLST 1209
            H+ S 
Sbjct: 166  HQPSA 170

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 61.5 bits (150), Expect = 4e-10
 Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 16/226 (7%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPTAGKVMIDGKDIRRLN 1080
            D  + K  NL ++ G+  A++G +GSGKS+    IA     Y+ T+G ++  G+D+  L 
Sbjct: 12   DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS-YEVTSGTILFKGQDLLELE 70

Query: 1081 LKSLRLKIGL---VQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA 1137
                R + GL    Q    +   S  + +         A   E     +    + A    
Sbjct: 71   PDE-RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLAL 129

Query: 1138 YKTP--VGERGVQ--LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER 1193
                     R V    SGG+K+R  I +  L  P + +LDE  S LD ++  ++ E + R
Sbjct: 130  LGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINR 189

Query: 1194 LM-RGRTTVLVAHRLSTIRGV--DCIGVVQDGRIVEQGSHSELVSR 1236
            L    R+ +++ H    +  +  D + V+ DGRIV+ G   EL   
Sbjct: 190  LREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD-VELAKE 234

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 54/196 (27%), Positives = 95/196 (48%), Gaps = 26/196 (13%)

Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087
             +D +  +  G   ALVG +GSGKS++   +  F    +GK+ I G+  R+   K+L   
Sbjct: 23   LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNL--- 79

Query: 1088 IGLVQQEPAL---FAASIFDNIAYGKEG---------ATEAEVVEAARAANVHGFVSALP 1135
            +  V Q   +   F   + D +  G+ G           + ++V AA A      V  + 
Sbjct: 80   VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALAR-----VDMVE 134

Query: 1136 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 1195
              ++  +GE    LSGGQK+R+ +ARA+ +   ++LLDE  + +D ++E  +   L  L 
Sbjct: 135  FRHRQ-IGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR 189

Query: 1196 -RGRTTVLVAHRLSTI 1210
              G+T ++  H L ++
Sbjct: 190  DEGKTMLVSTHNLGSV 205

Length = 272

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 54/211 (25%), Positives = 110/211 (52%), Gaps = 16/211 (7%)

Query: 1032 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL-KSLRLKIGL 1090
            +L I  G+   L+GA+G+GK++++  +      T+G+++ DGKDI      K +R  + +
Sbjct: 25   SLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAI 84

Query: 1091 VQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 1149
            V +   +F+  ++ +N+A G   A   +  E  R   V+      P  ++  + +R   +
Sbjct: 85   VPEGRRVFSRMTVEENLAMGGFFAERDQFQE--RIKWVYEL---FPRLHERRI-QRAGTM 138

Query: 1150 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR----GRTTVLVAH 1205
            SGG++Q +AI RA++  P +LLLDE +  L   +  ++Q+  + + +    G T  LV  
Sbjct: 139  SGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQIFDTIEQLREQGMTIFLVEQ 195

Query: 1206 RLS-TIRGVDCIGVVQDGRIVEQGSHSELVS 1235
              +  ++  D   V+++G +V + +   L++
Sbjct: 196  NANQALKLADRGYVLENGHVVLEDTGDALLA 226

Length = 237

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 60.2 bits (147), Expect = 5e-10
 Identities = 57/235 (24%), Positives = 94/235 (40%), Gaps = 56/235 (23%)

Query: 376 SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL- 434
            R + I+F   S    AG+ V + G +G+GK++++ ++     P+AG VL     I+   
Sbjct: 10  ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69

Query: 435 -----QLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLL 489
                 L +L  Q G+   +  L   T LEN+ + +      + EA   A          
Sbjct: 70  DEYHQDLLYLGHQPGI---KTEL---TALENLRFYQRLHGPGDDEALWEAL--------- 114

Query: 490 PNGYSTQVGERGV------QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
                 QVG  G       QLS GQ++R+A+AR  L    + +LDE  +A+D    + ++
Sbjct: 115 -----AQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLE 169

Query: 544 EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASL 598
             L             H              +QG +V   TH++L   +     L
Sbjct: 170 ALLA-----------QH-------------AEQGGMVILTTHQDLPVASDKVRKL 200

Length = 204

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 63.1 bits (153), Expect = 6e-10
 Identities = 65/271 (23%), Positives = 105/271 (38%), Gaps = 30/271 (11%)

Query: 321 SFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYP----S 376
           +   L  F +        +E+      ++         D+   +IE K+V  +      S
Sbjct: 300 ACQRLADFGERFNEPEPELELSDADNVLLLAH------DKSVDSIELKDVHMNPKAPEGS 353

Query: 377 RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL 436
               +   D  I    G  V +VG +G GKST+  L    Y P  G +LLD   +     
Sbjct: 354 EGFALGPIDLRI--AQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSR 411

Query: 437 RWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAAN----AHSFITLLPNG 492
              RD         A+FA   L + L G  E   A ++ A         A   + +   G
Sbjct: 412 DDYRDLFS------AIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADK-VKIEDGG 464

Query: 493 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL--DRLM 550
           +ST        LS GQ++R+A+  A L++  ILL DE  +  D   +    E L  D   
Sbjct: 465 FSTTTA-----LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR 519

Query: 551 VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVE 581
            G+T ++++H        D +  +  G +V+
Sbjct: 520 QGKTIIIISHDDQYFELADQIIKLAAGCIVK 550

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 60.2 bits (146), Expect = 7e-10
 Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 32/212 (15%)

Query: 392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPA 451
            G+ + ++G +G+GK+T++  I     P  G V +                IG V Q   
Sbjct: 5   KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA-----SPGKGWRHIGYVPQRHE 59

Query: 452 L---FATTILENILYGKP----------EATMAEVEAAASAANAHSFITLLPNGYSTQVG 498
               F  ++   ++ G+            A  A V  A                  T++ 
Sbjct: 60  FAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGL------------TELA 107

Query: 499 ERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTV 556
           +R V +LSGGQ+QR+ +ARA+   P +LLLDE  + LD  ++ ++ E    L   G   +
Sbjct: 108 DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAIL 167

Query: 557 VVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 588
           +  H L+         V+  G+V+  GT ++L
Sbjct: 168 MTTHDLAQAMATCDRVVLLNGRVIADGTPQQL 199

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 62.9 bits (153), Expect = 7e-10
 Identities = 66/240 (27%), Positives = 102/240 (42%), Gaps = 37/240 (15%)

Query: 358 LDEVNGNIEFKNVTFSYPSRPDVI---IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIE 414
           LD      EF+++  S+  R  VI   + R+ ++    G  VAVVG SG+GK+T++ +I 
Sbjct: 371 LDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMIL 430

Query: 415 RF--------YDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP 466
                     Y P++G V +    +  L              EP     TILE+ L  K 
Sbjct: 431 GAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEY---------EPEFGEVTILEH-LRSKT 480

Query: 467 EATMAEVEAAASA-ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKIL 525
               A VE    A  +           Y  +  E    LS GQK+R  +A+ + + P +L
Sbjct: 481 GDLNAAVEILNRAGLSDAVL-------YRRKFSE----LSTGQKERAKLAKLLAERPNVL 529

Query: 526 LLDEATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNV--DTVAVIQQGQVVE 581
           L+DE  + LD  +   V   +  L    G T +VV HR      +  DT+ ++  G+V  
Sbjct: 530 LIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPV 589

Length = 593

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 58.2 bits (142), Expect = 7e-10
 Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 2/58 (3%)

Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAH 560
           QLSGG+K R+A+A+ +L+NP +LLLDE T+ LD  S   ++EAL       T ++V+H
Sbjct: 70  QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSH 125

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 63.1 bits (153), Expect = 7e-10
 Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 22/229 (9%)

Query: 1008 GEIELRHVDFAYPSRPDVVVFK--DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT 1065
              IEL+ V     +      F     +LRI  G    +VG +G GKS++  L    Y P 
Sbjct: 336  DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395

Query: 1066 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARA 1124
             G++++DG  +   +    R          A+FA   +FD++    EG       E A  
Sbjct: 396  EGEILLDGAAVSADSRDDYR------DLFSAIFADFHLFDDLIGPDEG-------EHASL 442

Query: 1125 ANVHGFVSALPNAYKTPVGERG----VQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 1180
             N   ++  L  A K  + + G      LS GQ++R+A+  A L++  ILL DE  +  D
Sbjct: 443  DNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQD 502

Query: 1181 AESECVLQEAL--ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 1227
               +    E L  +   +G+T ++++H        D I  +  G IV+ 
Sbjct: 503  PAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 60.4 bits (146), Expect = 9e-10
 Identities = 60/218 (27%), Positives = 108/218 (49%), Gaps = 25/218 (11%)

Query: 1032 NLRIRAGQSQALVGASGSGKSSVIALIERFY--DPTAG-KVMIDGKDIRRL-----NLKS 1083
            +L I  G+  AL+G SGSGKS+++  +      D +AG  + + G+ ++R      +++ 
Sbjct: 24   DLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK 83

Query: 1084 LRLKIGLV-QQEPALFAASIFDNIAYGKEGATEA--------EVVEAARAANVHGFVSAL 1134
             R   G + QQ   +   S+ +N+  G  G+T             +  RA      V  +
Sbjct: 84   SRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV 143

Query: 1135 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL 1194
              A+     +R   LSGGQ+QR+AIARA+++   ++L DE  ++LD ES  ++ + L  +
Sbjct: 144  HFAH-----QRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI 198

Query: 1195 MR--GRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGS 1229
             +  G T V+  H++   +R  + I  ++ G +   GS
Sbjct: 199  NQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236

Length = 262

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 52/208 (25%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI--DGKDIRRLN---- 1080
            V ++ +L + AG+   L G SGSGKS+++  +   Y P  G++++  +G+ +  +     
Sbjct: 26   VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85

Query: 1081 --LKSLRLKIGLVQQ---------------EPALFAASIFDNIAYGKEGATEAEVVEAAR 1123
              L+  R  IG V Q               EP L                   EV  A  
Sbjct: 86   EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL-------------ARGVPREVARAKA 132

Query: 1124 AA-----NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
            A      N+   + +L  A            SGG++QR+ IAR  + +  ILLLDE T++
Sbjct: 133  ADLLTRLNLPERLWSLAPA----------TFSGGEQQRVNIARGFIVDYPILLLDEPTAS 182

Query: 1179 LDAESECVLQEAL-ERLMRGRTTVLVAH 1205
            LDA +  V+ E + E   RG   V + H
Sbjct: 183  LDATNRAVVVELIREAKARGAALVGIFH 210

Length = 235

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 62.6 bits (152), Expect = 1e-09
 Identities = 61/214 (28%), Positives = 107/214 (50%), Gaps = 27/214 (12%)

Query: 1038 GQSQALVGASGSGKSSVI-ALIERFYDPT-AGKVMIDGKDIRRLNLKSLRLKIGLVQQEP 1095
            G+  A++G SGSGKS+++ AL  R       G ++ + +   +  LK    + G V Q+ 
Sbjct: 94   GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK----RTGFVTQDD 149

Query: 1096 ALFA------ASIFDNIAYGKEGATEAEVVEAARAANVHGFVS--ALPNAYKTPVGE--- 1144
             L+         +F ++    +  T+ E +  A +      +S   L     T +G    
Sbjct: 150  ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESV-----ISELGLTKCENTIIGNSFI 204

Query: 1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLV 1203
            RG+  SGG+++R++IA  +L NP++L+LDE TS LDA +   L   L  L  +G+T V  
Sbjct: 205  RGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTS 262

Query: 1204 AHRLST--IRGVDCIGVVQDGRIVEQGSHSELVS 1235
             H+ S+   +  D + V+ +GR +  G  S+ ++
Sbjct: 263  MHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296

Length = 659

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 61.2 bits (149), Expect = 2e-09
 Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 30/170 (17%)

Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY---DPTAGKVMIDGKDIRRLNLKSL 1084
            F++ +L +RAG+   L G  G+G++    L E  Y       G++M++GK+I  L+    
Sbjct: 279  FRNISLEVRAGEILGLAGVVGAGRTE---LAETLYGLRPARGGRIMLNGKEINALSTAQ- 334

Query: 1085 RLKIGLV-----QQEPALFA-ASIFDNI---AYGKEG-----ATEAEVVEAARAANVHGF 1130
            RL  GLV     +Q   L+  A +  N+    + + G     A E  V+E  R A    F
Sbjct: 335  RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKF 394

Query: 1131 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 1180
                 N  +         LSGG +Q++ IA+ +  +P +L++DE T  +D
Sbjct: 395  -----NHAEQAAR----TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435

Length = 510

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 60.9 bits (149), Expect = 2e-09
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 54/202 (26%)

Query: 1018 AYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM--IDGKD 1075
              P  P   + KD +L    G    ++G +G+GKS+++            ++M  +D K+
Sbjct: 15   VVP--PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLL------------RIMAGVD-KE 59

Query: 1076 IR---RLNLKSLRLKIGLVQQEP------------------------------ALFAASI 1102
                 R    +  +K+G + QEP                              A +A   
Sbjct: 60   FEGEARP---APGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPD 116

Query: 1103 FDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIAR 1161
             D  A   E     E+++AA A ++   +    +A + P  +  V +LSGG+++R+A+ R
Sbjct: 117  ADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCR 176

Query: 1162 AVLKNPAILLLDEATSALDAES 1183
             +L+ P +LLLDE T+ LDAES
Sbjct: 177  LLLEKPDMLLLDEPTNHLDAES 198

Length = 556

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 61.5 bits (150), Expect = 2e-09
 Identities = 61/212 (28%), Positives = 102/212 (48%), Gaps = 37/212 (17%)

Query: 1004 ETIR-GEI--ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIER 1060
            E  R G+I  E+ +V++         + KDF+ +++ G   AL+G +G GK++++ L+  
Sbjct: 311  EASRSGKIVFEMENVNYQID---GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLG 367

Query: 1061 FYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALF--AASIFDNIAYGKEGATEAEV 1118
                 +G++    K           L++    Q  A      ++ DN+A GK+     EV
Sbjct: 368  QLQADSGRIHCGTK-----------LEVAYFDQHRAELDPEKTVMDNLAEGKQ-----EV 411

Query: 1119 VEAARAANVHGFVSAL---PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 1175
            +   R  +V G++      P    TPV      LSGG++ R+ +AR  LK   +L+LDE 
Sbjct: 412  MVNGRPRHVLGYLQDFLFHPKRAMTPVK----ALSGGERNRLLLARLFLKPSNLLILDEP 467

Query: 1176 TSALDAESECVLQEALERLMRGR--TTVLVAH 1205
            T+ LD E+     E LE L+     T +LV+H
Sbjct: 468  TNDLDVET----LELLEELLDSYQGTVLLVSH 495

Length = 635

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 61.0 bits (148), Expect = 3e-09
 Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHR 1206
            LSGG+KQR+ +AR + K P + L DE T  LD ++  ++  ALE  ++  G + VL +H 
Sbjct: 169  LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228

Query: 1207 LSTIRGVDCIGV-VQDGRIVEQGSHSELVSR 1236
               I  +    + +++G I E+G+  E+V+ 
Sbjct: 229  PEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 59.4 bits (144), Expect = 4e-09
 Identities = 63/219 (28%), Positives = 97/219 (44%), Gaps = 33/219 (15%)

Query: 393 GKTVAVVGGSGSGKS----TVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG---- 444
           G+ V +VG SGSGKS     ++ LI+      A  +  +  D++ +  +  R+ +G    
Sbjct: 33  GEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVA 92

Query: 445 LVNQEPALFATTILENILYGKPEATMAEV---EAAASAANAHSFITLLPNGYSTQVG--- 498
           ++ Q+P     T L N  Y      M  +   +           I LL      QVG   
Sbjct: 93  MIFQDP----MTSL-NPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLL-----NQVGIPD 142

Query: 499 ---ERGV---QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG 552
                 V   QLSGG  QR+ IA A+   PK+L+ DE T+ALD   ++ + E L  L   
Sbjct: 143 PASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK 202

Query: 553 RTT--VVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
                V++ H L+ +      + V+  GQVVETG   ++
Sbjct: 203 ENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241

Length = 326

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 58.0 bits (140), Expect = 4e-09
 Identities = 56/233 (24%), Positives = 110/233 (47%), Gaps = 19/233 (8%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           + F  V+  Y     +    + S+    G+ V ++G +G+GK+T++  +       +G +
Sbjct: 6   LSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62

Query: 425 LLDNVDIKTLQL-RWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANA 482
           + D  DI   Q  + +R+ + +V +   +F+  T+ EN+  G   A   + +        
Sbjct: 63  VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYE 122

Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
                L P  +  ++ +R   +SGG++Q +AI RA++  P++LLLDE +  L   +  I+
Sbjct: 123 -----LFPRLHERRI-QRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIII 173

Query: 543 QEALDRLMV----GRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELIA 590
           Q+  D +      G T  +V    +  ++  D   V++ G VV   T + L+A
Sbjct: 174 QQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226

Length = 237

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 60.0 bits (146), Expect = 5e-09
 Identities = 62/238 (26%), Positives = 99/238 (41%), Gaps = 31/238 (13%)

Query: 365 IEFKNVTFSYPSR-----P-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD 418
           +E +NVTF+Y        P ++ I R        G+ + ++GG+GSGKST+  L+   Y 
Sbjct: 323 LELRNVTFAYQDNGFSVGPINLTIKR--------GELLFLIGGNGSGKSTLAMLLTGLYQ 374

Query: 419 PNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAAS 478
           P +G +LLD   +   Q    R     V  +  LF   +        PE   A       
Sbjct: 375 PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL-------GPEGKPANPALVEK 427

Query: 479 AANAHSFITLLPNGYSTQVGER--GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
                    L           R   ++LS GQK+R+A+  A+ +   ILLLDE  +  D 
Sbjct: 428 WLE-----RLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDP 482

Query: 537 GSESIV-QEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVE-TGTHEELIAK 591
                  Q  L  L  +G+T   ++H      + D +  ++ GQ+ E TG   +  ++
Sbjct: 483 HFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDAASR 540

Length = 547

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score = 59.8 bits (145), Expect = 8e-09
 Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 34/214 (15%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            I+  ++    P+    V+ +  +  + +G +  + G +G GKSS+  ++   +    G++
Sbjct: 452  IKFENIPLVTPN--GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRL 509

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAY-------GKEGATEAEVVEAA 1122
                K            K+  V Q P +   ++ D I Y        + G ++ ++ +  
Sbjct: 510  TKPAKG-----------KLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQIL 558

Query: 1123 RAANVHGFVSALPNAYKTPVGERGVQ-----LSGGQKQRIAIARAVLKNPAILLLDEATS 1177
               NV      L +  +   G   VQ     LSGG+KQRIA+AR     P   +LDE TS
Sbjct: 559  D--NVQ-----LTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTS 611

Query: 1178 ALDAESECVLQEALERLMRGRTTVLVAHRLSTIR 1211
            A+  + E  +         G T   V+HR S  +
Sbjct: 612  AVSVDVEGYMYRLCREF--GITLFSVSHRKSLWK 643

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 59.5 bits (144), Expect = 9e-09
 Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 45/227 (19%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           I F + +F YP  P  ++F++ +        +A+VG +G GKST++ LI     P++G V
Sbjct: 509 ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQE----------PALFATTILENILYGKPEATMAEVE 474
                       R  + ++ + +Q           P L+       +   K  A +    
Sbjct: 567 F-----------RSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG 615

Query: 475 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
              + A        L   Y+         LSGGQK R+A A+   K P ILLLDE ++ L
Sbjct: 616 VTGNLA--------LQPMYT---------LSGGQKSRVAFAKITFKKPHILLLDEPSNHL 658

Query: 535 DAGS-ESIVQEALDRLMVGRTTVVVAHRLSTIR-NVDTVAVIQQGQV 579
           D  + E+++Q  +  L  G   ++V+H    I  +VD + V+ +G+V
Sbjct: 659 DLDAVEALIQGLV--LFQG-GVLMVSHDEHLISGSVDELWVVSEGKV 702

Length = 718

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 57.6 bits (139), Expect = 9e-09
 Identities = 58/221 (26%), Positives = 101/221 (45%), Gaps = 34/221 (15%)

Query: 383 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL---RWL 439
            RD S   P G   A+VG +GSGKST+   +        G V L +  I  L     + L
Sbjct: 23  LRDASFTVPGGSIAALVGVNGSGKSTLFKAL-------MGFVRLASGKISILGQPTRQAL 75

Query: 440 RDQ-IGLVNQEPAL---FATTILENILYGK---------PEATMAEVEAAASAANAHSFI 486
           +   +  V Q   +   F   + + ++ G+          +    ++  AA A      +
Sbjct: 76  QKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALAR-----V 130

Query: 487 TLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL 546
            ++   +  Q+GE    LSGGQK+R+ +ARA+ +  +++LLDE  + +D  +E+ +   L
Sbjct: 131 DMVEFRHR-QIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLL 185

Query: 547 DRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHE 586
             L   G+T +V  H L ++       V+ +G V+ +G  E
Sbjct: 186 RELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTE 226

Length = 272

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 59.0 bits (143), Expect = 9e-09
 Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 22/217 (10%)

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
            S P V    + NL++R     AL+G +G+GKS+++  +   Y   +G ++  GK+I   +
Sbjct: 7    SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI---D 63

Query: 1081 LKS----LRLKIGLVQQEPALF-AASIFDNI---AYGKEG--ATEAEVVEAARAANVHGF 1130
             KS    L   I +V QE  L    S+ DN+    Y  +G    + ++    +A      
Sbjct: 64   FKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELD 123

Query: 1131 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEA 1190
            +   P         +   LS  Q Q I IA+A   N  I+++DE TS+L  +    L   
Sbjct: 124  IDIDPR-------AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI 176

Query: 1191 LERLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIV 1225
            + +L  RG   V ++H++  I  + D I +++DG+ +
Sbjct: 177  IRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213

Length = 491

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 56.6 bits (137), Expect = 2e-08
 Identities = 61/228 (26%), Positives = 103/228 (45%), Gaps = 33/228 (14%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF--YDPTAGKVMIDGKDIRRLN- 1080
            +  + K  NL I  G+  A++G +GSGKS++  +I     Y    G ++  G+ I  L  
Sbjct: 19   ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78

Query: 1081 -LKSLRLKIGLVQQEPALFAA---SIFDNIAYG----KEGATEAEVVEAARAANVHGFVS 1132
              ++  L I L  Q P        + F  +AY      +G  E + +E         F+ 
Sbjct: 79   EERA-HLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLE---------FLE 128

Query: 1133 ALPNAYKTPVG------ERGVQ--LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 1184
             +    K  VG       R V    SGG+K+R  I +  L +  + +LDE  S LD ++ 
Sbjct: 129  IINEKLKL-VGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDAL 187

Query: 1185 CVLQEALERLMR-GRTTVLVAH--RLSTIRGVDCIGVVQDGRIVEQGS 1229
             ++ E + +LM    + +L+ H  RL      D + V+Q+G+I++ G 
Sbjct: 188  KIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235

Length = 252

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 56.9 bits (138), Expect = 4e-08
 Identities = 63/228 (27%), Positives = 104/228 (45%), Gaps = 41/228 (17%)

Query: 349 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKST 408
           I  P   R  D+V   IE +N++  +  +   ++  D S   P G  V V+G +G+GKST
Sbjct: 310 IYIPPGPRLGDKV---IEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKST 363

Query: 409 VVSLIERFYDPNAGHVLL-DNVDIKTLQLRWLRDQIGLVNQE-PALFAT-TILENILYGK 465
           +  +I     P++G + + + V            ++  V+Q   AL    T+ E I  G 
Sbjct: 364 LFRMITGQEQPDSGTIKIGETV------------KLAYVDQSRDALDPNKTVWEEISGGL 411

Query: 466 PEATMAEVEAAASA-ANAHSFITLLPNGYSTQ--VGERGVQLSGGQKQRIAIARAMLKNP 522
               + + E  + A     +F      G   Q  VG    QLSGG++ R+ +A+ +    
Sbjct: 412 DIIQLGKREVPSRAYVGRFNF-----KGSDQQKKVG----QLSGGERNRVHLAKTLKSGG 462

Query: 523 KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAH------RLST 564
            +LLLDE T+ LD  +   ++EAL  L      VV++H      R++T
Sbjct: 463 NVLLLDEPTNDLDVETLRALEEAL--LEFAGCAVVISHDRWFLDRIAT 508

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 53.5 bits (128), Expect = 4e-08
 Identities = 43/179 (24%), Positives = 61/179 (34%), Gaps = 61/179 (34%)

Query: 1042 ALVGASGSGKSSVIALIERFYDPTAGKV-MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA 1100
             +VG  GSGK+++   + R   P  G V  IDG+DI    L  L L I            
Sbjct: 6    LIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII------------ 53

Query: 1101 SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 1160
                                                     VG +    SG  + R+A+A
Sbjct: 54   -----------------------------------------VGGKKASGSGELRLRLALA 72

Query: 1161 RAVLKNPAILLLDEATSALDAESECVLQEALERLM-------RGRTTVLVAHRLSTIRG 1212
             A    P +L+LDE TS LDAE E +L    E  +       +  T +L  +    +  
Sbjct: 73   LARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGP 131

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 56.6 bits (137), Expect = 6e-08
 Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 29/229 (12%)

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
            + P V       L +  G+  ALVG +G+GKS+++ ++   Y   AG ++  GK++    
Sbjct: 13   AFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG 72

Query: 1081 LK-SLRLKIGLVQQEPALFAA-SIFDNIAYGKEGAT------------EAEVVEAARAAN 1126
             K S    IG++ QE  L    +I +NI  G+E               EA+ +  AR   
Sbjct: 73   PKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKL-LARLN- 130

Query: 1127 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESEC 1185
                   L  +    VGE    LS G++Q + IA+ +     ++++DE T AL D E+E 
Sbjct: 131  -------LRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES 179

Query: 1186 VLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSEL 1233
            + +   E   +GR  V ++HRL  I  + D + V +DG+ + +   ++L
Sbjct: 180  LFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228

Length = 501

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 55.6 bits (134), Expect = 6e-08
 Identities = 67/260 (25%), Positives = 109/260 (41%), Gaps = 42/260 (16%)

Query: 358 LDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY 417
           LD  N  IEFK       S+  V      S+    G+   +VG SGSGKS +   I    
Sbjct: 4   LDIRNLTIEFKT------SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVN 57

Query: 418 DPN----AGHVLLDNVDIKTLQLRWLRDQIG----LVNQEPAL-------FATTILENIL 462
             N    A  +  D++D+  L  R  R  +G    ++ QEP             +++NI 
Sbjct: 58  KDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNI- 116

Query: 463 YGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERG---------VQLSGGQKQRIA 513
              P  T                I LL      +VG +           +L+ G+ Q++ 
Sbjct: 117 ---PAWTYKGRWWQRFGWRKRRAIELL-----HRVGIKDHKDIMRSYPYELTEGECQKVM 168

Query: 514 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRN-VDT 570
           IA A+   P++L+ DE T++++  +++ +   L RL      T ++++H L  I    D 
Sbjct: 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADK 228

Query: 571 VAVIQQGQVVETGTHEELIA 590
           + V+  GQ VE+   EEL+ 
Sbjct: 229 INVLYCGQTVESAPSEELVT 248

Length = 330

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 56.4 bits (136), Expect = 7e-08
 Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 37/216 (17%)

Query: 391 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEP 450
           P G+ V ++G +GSGKST+ +LI     PN G      VDIK      +    GL  Q  
Sbjct: 48  PEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG-----TVDIKG-SAALIAISSGLNGQ-- 99

Query: 451 ALFATTILENI-----LYGKPEATMAEV-EAAASAANAHSFITLLPNGYSTQVGERGVQL 504
                T +ENI     + G  +  + E+       A+   FI      YS+         
Sbjct: 100 ----LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSS--------- 146

Query: 505 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL----MVGRTTVVVAH 560
             G K R+  A ++  NP IL++DE   AL  G ++  ++ LD++      G+T   ++H
Sbjct: 147 --GMKSRLGFAISVHINPDILVIDE---ALSVGDQTFTKKCLDKMNEFKEQGKTIFFISH 201

Query: 561 RLSTIRNVDTVAV-IQQGQVVETGTHEELIAKAGAY 595
            LS +++  T A+ +  GQV E G  +E++     +
Sbjct: 202 SLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEF 237

Length = 549

>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

 Score = 56.3 bits (136), Expect = 8e-08
 Identities = 58/225 (25%), Positives = 95/225 (42%), Gaps = 31/225 (13%)

Query: 352 PTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVS 411
           P  G    + NG I+F+N+    P+  DV+I    S   P+G  + + G +G GKS++  
Sbjct: 440 PGRGIVEYQDNG-IKFENIPLVTPNG-DVLI-ESLSFEVPSGNNLLICGPNGCGKSSLFR 496

Query: 412 LIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMA 471
           ++   +    G +               + ++  V Q P +   T+ + I+Y  P+++  
Sbjct: 497 ILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIY--PDSSED 543

Query: 472 EVEAAASAANAHSFITLLPNGYSTQVGERGV----------QLSGGQKQRIAIARAMLKN 521
                 S  +      +L N   T + ER             LSGG+KQRIA+AR     
Sbjct: 544 MKRRGLSDKD---LEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHK 600

Query: 522 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIR 566
           P+  +LDE TSA+    E  +         G T   V+HR S  +
Sbjct: 601 PQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHRKSLWK 643

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 54.3 bits (131), Expect = 9e-08
 Identities = 54/245 (22%), Positives = 95/245 (38%), Gaps = 35/245 (14%)

Query: 365 IEFKNVTFSY------------------PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGK 406
           IE  N++ SY                      +V   +  S     G+ V  +G +G+GK
Sbjct: 1   IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGK 60

Query: 407 STVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA--TTILENILYG 464
           +T + ++     P +G       +++   L   + +   + +   +F   T +  ++   
Sbjct: 61  TTTLKILSGLLQPTSG-------EVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113

Query: 465 KPEATMAE---VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN 521
                +A    +  A           LL          R  QLS GQ+ R  IA A+L  
Sbjct: 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVR--QLSLGQRMRAEIAAALLHE 171

Query: 522 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVV--AHRLSTIRNV-DTVAVIQQGQ 578
           P+IL LDE T  LD  ++  ++  L      R T V+  +H +  I  +   V VI +G+
Sbjct: 172 PEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGR 231

Query: 579 VVETG 583
           ++  G
Sbjct: 232 LLYDG 236

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 55.3 bits (134), Expect = 1e-07
 Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 31/234 (13%)

Query: 1031 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI-- 1088
             +  +RAG+   L G  G+G+S ++ L+      TAG+V +DGK    ++++S R  I  
Sbjct: 272  ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGK---PIDIRSPRDAIRA 328

Query: 1089 GLV------QQEPALFAASIFDNIAYG--KEGATEAEVVEAAR-AANVHGFVSALPNAYK 1139
            G++      + E  +   S+ DNI     +       ++     A N   F+ +L    K
Sbjct: 329  GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL--NIK 386

Query: 1140 TPVGERG-VQLSGGQKQRIAIARAVLKNPAILLLDEATSALD--AESEC--VLQEALERL 1194
            TP  E+  + LSGG +Q+  + R + ++  ++LLDE T  +D  A+ E   V+ E     
Sbjct: 387  TPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-- 444

Query: 1195 MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247
             +G   + V+  L  + GV D I V+++GRI  +      ++R      + L L
Sbjct: 445  -QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGE------LAREQATERQALSL 491

Length = 501

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 55.6 bits (134), Expect = 1e-07
 Identities = 53/243 (21%), Positives = 103/243 (42%), Gaps = 29/243 (11%)

Query: 1001 EPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVI-ALIE 1059
            EP E     +E R++       P      D +  +R G+   + G  G+G++ ++ AL  
Sbjct: 249  EPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG 308

Query: 1060 RFYDPTAGKVMIDGKDIR-RLNLKSLRLKIGLVQQEP---------------ALFAASIF 1103
             +     G V I+GK +  R   +++R  I +V ++                 L     F
Sbjct: 309  AYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSF 368

Query: 1104 DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 1163
                     A    +  A +   V      LP            +LSGG +Q+  +A+ +
Sbjct: 369  CFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG----------RLSGGNQQKAVLAKML 418

Query: 1164 LKNPAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVAHRLSTIRGV-DCIGVVQD 1221
            L NP +L+LDE T  +D  ++  + + + +L + G   ++V+  L+ + G+ D + V+ +
Sbjct: 419  LTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGE 478

Query: 1222 GRI 1224
            G++
Sbjct: 479  GKL 481

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 16/195 (8%)

Query: 369 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 428
            + F Y  +P   + +  S   PAG  + + G +G+GK+T++ LI    +P  G +L + 
Sbjct: 6   ELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62

Query: 429 VDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFIT 487
             IK   L   + Q+  V     +    T+ EN LY        ++  +  A        
Sbjct: 63  QSIKK-DLCTYQKQLCFVGHRSGINPYLTLRENCLY--------DIHFSPGAVGITELCR 113

Query: 488 LLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS-ESIVQEAL 546
           L    +       G+ LS GQK+++A+ R  +   K+ LLDE   ALD  S  +I+ +  
Sbjct: 114 LFSLEHLIDY-PCGL-LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQ 171

Query: 547 DRLMVGRTTVVVAHR 561
           +    G   ++ +H+
Sbjct: 172 EHRAKGGAVLLTSHQ 186

Length = 200

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 55.0 bits (133), Expect = 2e-07
 Identities = 60/200 (30%), Positives = 100/200 (50%), Gaps = 23/200 (11%)

Query: 392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ----IGLVN 447
            G+ +A+VG +G+GKST++ ++   Y  +AG +L      K +     +      IG+++
Sbjct: 29  PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG---KEVTFNGPKSSQEAGIGIIH 85

Query: 448 QEPALFAT-TILENILYGK-PEATMAEVEAAASAANAHSFITLLPNGYSTQ--VGERGVQ 503
           QE  L    TI ENI  G+        ++     A A   +  L   +S+   VGE    
Sbjct: 86  QELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGE---- 141

Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSAL-DAGSES---IVQEALDRLMVGRTTVVVA 559
           LS G++Q + IA+ +    K++++DE T AL D  +ES   +++E   +   GR  V ++
Sbjct: 142 LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ---GRGIVYIS 198

Query: 560 HRLSTIRNV-DTVAVIQQGQ 578
           HRL  I  + D V V + GQ
Sbjct: 199 HRLKEIFEICDDVTVFRDGQ 218

Length = 501

>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 57/243 (23%), Positives = 106/243 (43%), Gaps = 40/243 (16%)

Query: 1032 NLRIRAGQSQALVGASGSGKS----SVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087
            ++ +  G+ + LVG SGSGKS    ++  + +  +  TA ++  D  D+ RL+ +  R  
Sbjct: 27   SMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKL 86

Query: 1088 IG----LVQQEPAL-------FAASIFDNIA-----------YGKEGATEAEVVEAARAA 1125
            +G    ++ QEP             +  NI            +G       E++      
Sbjct: 87   VGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIK 146

Query: 1126 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 1185
            +    + + P            +L+ G+ Q++ IA A+   P +L+ DE T++++  ++ 
Sbjct: 147  DHKDIMRSYPY-----------ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQA 195

Query: 1186 VLQEALERL--MRGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYS 1242
             +   L RL      T +L++H L  I +  D I V+  G+ VE     ELV+ P   Y+
Sbjct: 196  QIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMPHHPYT 255

Query: 1243 RLL 1245
            + L
Sbjct: 256  QAL 258

Length = 330

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 60/231 (25%)

Query: 365 IEFKNVTFSYPS-RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTV---------VSLIE 414
           + +KN+ ++ P       +  + S +   G   A++G SG+GK+T+           +I 
Sbjct: 4   LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT 63

Query: 415 RFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEV 473
                  G +L++   +     R      G V Q+       T+ E + +          
Sbjct: 64  -------GEILINGRPLDKNFQR----STGYVEQQDVHSPNLTVREALRF---------- 102

Query: 474 EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSA 533
               SA                    RG  LS  Q++R+ I   +   P IL LDE TS 
Sbjct: 103 ----SALL------------------RG--LSVEQRKRLTIGVELAAKPSILFLDEPTSG 138

Query: 534 LDAGSESIVQEALDRL-MVGRTTVVVAHRLS--TIRNVDTVAVIQQ-GQVV 580
           LD+ +   +   L +L   G+  +   H+ S       D + ++++ G+ V
Sbjct: 139 LDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTV 189

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 58/227 (25%), Positives = 96/227 (42%), Gaps = 41/227 (18%)

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF--YDPNAGHVLLDNVDIKTLQLRWLRDQ 442
           + SI    G+  A++G +GSGKST+  +I     Y    G +L     I  L+    R  
Sbjct: 27  NLSIN--KGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE-ERAH 83

Query: 443 IGL------------VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLP 490
           +G+            V+    L      +    G PE             +   F+ ++ 
Sbjct: 84  LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPEL------------DPLEFLEII- 130

Query: 491 NGYSTQVG------ERGVQ--LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
           N     VG       R V    SGG+K+R  I +  L + ++ +LDE  S LD  +  I+
Sbjct: 131 NEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKII 190

Query: 543 QEALDRLM-VGRTTVVVAH--RLSTIRNVDTVAVIQQGQVVETGTHE 586
            E +++LM    + +++ H  RL      D V V+Q G++++TG  E
Sbjct: 191 AEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237

Length = 252

>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional

 Score = 52.9 bits (127), Expect = 4e-07
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 10/127 (7%)

Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVV--VAH 560
           +L+ G+ Q++ IA A+   P++L+ DE T+A++  +++ +   L RL     T +  ++H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217

Query: 561 RLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQEMVRNR-DFANPSTRR 617
            L  +    D + V+  GQ VET   +EL+      Y      Q ++R   DF +    +
Sbjct: 218 DLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYT-----QALIRAIPDFGSAMPHK 272

Query: 618 SRSTRLS 624
           SR   L 
Sbjct: 273 SRLNTLP 279

Length = 330

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 53.7 bits (130), Expect = 5e-07
 Identities = 53/230 (23%), Positives = 105/230 (45%), Gaps = 21/230 (9%)

Query: 383 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR-WLRD 441
            RD S    AG+ + + G  G+G++ +   +      ++G +LLD   ++    R  ++ 
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334

Query: 442 QIGLV---NQEPALFAT-TILENILYG--KPEATMAEVEAAASAANAHSFITLL---PNG 492
            I  V    +   L    +I ENI     +  +    ++     A A  +I  L      
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394

Query: 493 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV- 551
               +G     LSGG +Q++ +AR +  +PK+L+LDE T  +D G+++ +   +  L   
Sbjct: 395 PEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE 450

Query: 552 GRTTVVVAHRLSTIRNV-DTVAVIQQGQVV-----ETGTHEELIAKAGAY 595
           G+  ++++  L  +  + D + V+++G++V     E  T E ++A A   
Sbjct: 451 GKAILMISSELPELLGLSDRILVMREGRIVGELDREEATEEAIMAAAFGG 500

Length = 500

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 53.7 bits (129), Expect = 5e-07
 Identities = 59/253 (23%), Positives = 111/253 (43%), Gaps = 36/253 (14%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-AGH 423
           +E +N+T      P      D S     G+ + V G  G+G++ +V  +   Y     G+
Sbjct: 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN 317

Query: 424 VLLDN--VDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAAN 481
           V ++   VDI+    + +R  I +V ++       I+  +  GK            S   
Sbjct: 318 VFINGKPVDIRNPA-QAIRAGIAMVPEDRK--RHGIVPILGVGK--------NITLSVLK 366

Query: 482 AHSFITLLPNGYSTQVGERGVQ---------------LSGGQKQRIAIARAMLKNPKILL 526
           +  F   +      Q+    +Q               LSGG +Q+  +A+ +L NP++L+
Sbjct: 367 SFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLI 426

Query: 527 LDEATSALDAGSESIVQEALDRLMV-GRTTVVVAHRLSTIRNV-DTVAVIQQGQV----V 580
           LDE T  +D G++  + + +++L   G   +VV+  L+ +  + D V VI +G++    V
Sbjct: 427 LDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486

Query: 581 ETG-THEELIAKA 592
               T E+++A A
Sbjct: 487 NHALTQEQVLAAA 499

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 52.2 bits (126), Expect = 5e-07
 Identities = 64/261 (24%), Positives = 103/261 (39%), Gaps = 72/261 (27%)

Query: 384 RDFSIFFPAGKTVAVVGGSGSGKSTVV------SLIERFYDPNAGHVLLDNVD-IKTLQL 436
           ++  +  P G    V G SGSGKS+++      +L  R +          N D I+ L+ 
Sbjct: 12  KNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLH---LKKEQPGNHDRIEGLEH 68

Query: 437 RWLRDQIGLVNQEP-----------------------------ALFATTILENILY-GKP 466
               D++ +++Q P                               +    LE + Y GK 
Sbjct: 69  I---DKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLE-VRYKGK- 123

Query: 467 EATMAEVEAAASAANAHSFITLLPN-------------GYSTQVGERGVQLSGGQKQRIA 513
             ++A+V    +   A  F   +P              GY  ++G+    LSGG+ QRI 
Sbjct: 124 --SIADV-LDMTVEEALEFFENIPKIARKLQTLCDVGLGY-IKLGQPATTLSGGEAQRIK 179

Query: 514 IARAMLK---NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVD 569
           +A+ + K      + +LDE T+ L       + E L RL+  G T VV+ H L  I+  D
Sbjct: 180 LAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCAD 239

Query: 570 TVAVI------QQGQVVETGT 584
            +  +        GQVV +GT
Sbjct: 240 WIIDLGPEGGDGGGQVVASGT 260

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-MRGRTTVLV 1203
            + LSGG+ QR+AIA A+L+N    L DE ++ LD E       A+ RL   G+ T LV
Sbjct: 70   IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV 127

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 53.6 bits (129), Expect = 6e-07
 Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 40/169 (23%)

Query: 393 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQE-PA 451
           G+ V +VG +G GKST+++L++     + G            QL W       VNQE PA
Sbjct: 27  GQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----NWQLAW-------VNQETPA 75

Query: 452 LFATTILENILYGKPEATMAEVEAAASAANA----HSFITL------------------L 489
           L     LE ++ G  E    ++EA    AN     H+  T+                  L
Sbjct: 76  L-PQPALEYVIDGDRE--YRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL 132

Query: 490 PNG--YSTQVGERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALD 535
            +G  +S +  ER V   SGG + R+ +A+A++    +LLLDE T+ LD
Sbjct: 133 LHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181

Length = 638

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 26/191 (13%)

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
            SR +  VF   +  + AG++  + G +G+GK++++ ++       +G++ IDGK   R +
Sbjct: 20   SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79

Query: 1081 LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGF-VSALPNAY 1138
                   +  +   P L A  S  +N+ +                  +HG     +P + 
Sbjct: 80   RSRF---MAYLGHLPGLKADLSTLENLHF---------------LCGLHGRRAKQMPGSA 121

Query: 1139 KTPVGERGV------QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 1192
               VG  G       QLS GQK+R+A+AR  L    + LLDE  + LD E   ++   + 
Sbjct: 122  LAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMIS 181

Query: 1193 RLMRGRTTVLV 1203
              +RG    LV
Sbjct: 182  AHLRGGGAALV 192

Length = 214

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 50.7 bits (122), Expect = 8e-07
 Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 57/218 (26%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 1085
            KDF+  ++ G+   ++G  GSG S+    +A          G +  +G   +    +   
Sbjct: 24   KDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE-FAEKYP 82

Query: 1086 LKIGLVQQE----PALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTP 1141
             +I  V +E    P L                T  E ++ A     + FV          
Sbjct: 83   GEIIYVSEEDVHFPTL----------------TVRETLDFALRCKGNEFV---------- 116

Query: 1142 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTV 1201
               RG+  SGG+++R++IA A++   ++L  D +T  LD+ +      ALE L   RT  
Sbjct: 117  ---RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST------ALEILKCIRTMA 165

Query: 1202 LVAHRLSTIRG-----------VDCIGVVQDGRIVEQG 1228
             V  + +T               D + V+ +GR +  G
Sbjct: 166  DVL-KTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 49.4 bits (119), Expect = 8e-07
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IEL ++   Y  +    + KD +L I  G    LVG +G+GKS+++ LI    +P  G V
Sbjct: 1    IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQ 1093
                            +KIG  +Q
Sbjct: 58   TWGST-----------VKIGYFEQ 70

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 52.9 bits (127), Expect = 9e-07
 Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 12/149 (8%)

Query: 473 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 532
           ++A  + A A S +  L      QV +     SGG + RIA+ARA+   P +LLLDE T+
Sbjct: 315 IDAYTAEARAASILAGLSFTPEMQV-KATKTFSGGWRMRIALARALFIEPDLLLLDEPTN 373

Query: 533 ALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA 592
            LD  +   ++  L  L   +T +VV+H    +  V T  +   GQ        +L+   
Sbjct: 374 HLDLHAVLWLETYL--LKWPKTFIVVSHAREFLNTVVTDILHLHGQ--------KLVTYK 423

Query: 593 GAYASLIRF-QEMVRNRDFANPSTRRSRS 620
           G Y +  R  +E ++N+  A  S  RSRS
Sbjct: 424 GDYDTFERTREEQLKNQQKAFESNERSRS 452

Length = 718

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE +N++ +Y  +    + +D S+    G  + +VG +G+GKST++ LI    +P+ G V
Sbjct: 1   IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57

Query: 425 LLD 427
              
Sbjct: 58  TWG 60

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 51.9 bits (124), Expect = 2e-06
 Identities = 52/224 (23%), Positives = 98/224 (43%), Gaps = 51/224 (22%)

Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 1094
            +R G+   L+G +G+GK++   ++      T+G   + GK I   N+  +   +G   Q 
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQF 2020

Query: 1095 PALFAASIFDNIAYGKE---------GATEAEVVEAA----RAANVHGFVSALPNAYKTP 1141
             A+      D++  G+E         G    E+ + A    ++  +  +   L   Y   
Sbjct: 2021 DAI------DDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTY--- 2071

Query: 1142 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTT 1200
                    SGG K++++ A A++  P ++LLDE T+ +D ++  +L   +  ++R GR  
Sbjct: 2072 --------SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAV 2123

Query: 1201 VLVAHRLS-----------TIRGV-DCIGVVQ-------DGRIV 1225
            VL +H +             ++G   C+G +Q       DG IV
Sbjct: 2124 VLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIV 2167

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 51.3 bits (124), Expect = 2e-06
 Identities = 24/60 (40%), Positives = 33/60 (55%)

Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL 562
           +LSGG+ QR+AIA A+L++      DE TS LD      V   +  L  G+  +VV H L
Sbjct: 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL 271

Length = 590

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 49.1 bits (117), Expect = 3e-06
 Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 21/155 (13%)

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ---LRWLRD 441
           D SI F       + G +G GKS+++ +I     P++G++   N +I  +      ++  
Sbjct: 18  DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77

Query: 442 QIGLVNQEPALFATTILENI-LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGER 500
            +GL          T+ EN+  + +   +   + AA      H  +            E+
Sbjct: 78  NLGLK------LEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EK 120

Query: 501 GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD 535
              LS G ++ +AIAR +     + LLDE  + L 
Sbjct: 121 CYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155

Length = 195

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 51.1 bits (123), Expect = 3e-06
 Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 499 ERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR--TT 555
           ER V  LSGG+ QR+AIA A+ +   + LLDE ++ LD     IV + + R +     T 
Sbjct: 450 ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTA 509

Query: 556 VVVAHRLSTI 565
           +VV H +  I
Sbjct: 510 LVVDHDIYMI 519

Length = 591

>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional

 Score = 50.2 bits (120), Expect = 4e-06
 Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAH 1205
            +L+ G+ Q++ IA A+   P +L+ DE T+A++  ++  +   L RL +    T +L++H
Sbjct: 158  ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217

Query: 1206 RLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 1245
             L  + +  D I V+  G+ VE     ELV+ P   Y++ L
Sbjct: 218  DLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQAL 258

Length = 330

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 502 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVA 559
           + LSGG+ QR+AIA A+L+N    L DE ++ LD         A+ RL     +T +VV 
Sbjct: 70  IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129

Query: 560 HRLSTIRNVDTVAVIQQGQ 578
           H L+ +  +     + +G+
Sbjct: 130 HDLAVLDYLSDRIHVFEGE 148

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 22/173 (12%)

Query: 390 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQE 449
               + + ++G +G GK+T + ++     P+ G + ++   +         D  G V   
Sbjct: 22  ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRD- 80

Query: 450 PALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK 509
                  +L +I          + E A           +L      +V E    LSGG+ 
Sbjct: 81  -------LLSSITKDFYTHPYFKTEIA----KPLQIEQILDR----EVPE----LSGGEL 121

Query: 510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG--RTTVVVAH 560
           QR+AIA  + K+  I LLDE ++ LD     +  + + R      +T  VV H
Sbjct: 122 QRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 65/229 (28%), Positives = 100/229 (43%), Gaps = 30/229 (13%)

Query: 381 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVV-SLIERFYDPNA-------GHVLLDN---V 429
            I RD S+    G+  A++G +G+GKST++ +L        A       G V L+     
Sbjct: 15  AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA 74

Query: 430 DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGK-PEATMAEVEAAASAANAHSFITL 488
            I   +L  LR  +    Q PA FA +  E +L G+ P A  A          A   + L
Sbjct: 75  AIDAPRLARLRAVLPQAAQ-PA-FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALAL 132

Query: 489 LPNGYSTQVGERGVQLSGGQKQRIAIARAMLK---------NPKILLLDEATSALDAGSE 539
              G +  VG     LSGG+  R+  AR + +          P+ LLLDE T+ALD   +
Sbjct: 133 A--GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQ 190

Query: 540 SIVQEALDRLM----VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 584
             + + + RL     +G   +V    L+  R+ D +A++  G +V  G 
Sbjct: 191 HRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHGA 238

Length = 272

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 46/199 (23%), Positives = 92/199 (46%), Gaps = 24/199 (12%)

Query: 1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073
             +DF Y  +P   + +  +  + AG    L G++G+GK++++ LI    +P  G+++ + 
Sbjct: 6    ELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62

Query: 1074 KDIRRLNLKSLRLKIGLVQQE----PALFAASIFDNIAYG-KEGATEAEVVEAARAANVH 1128
            + I++ +L + + ++  V       P L   ++ +N  Y          + E  R     
Sbjct: 63   QSIKK-DLCTYQKQLCFVGHRSGINPYL---TLRENCLYDIHFSPGAVGITELCR----- 113

Query: 1129 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES-ECVL 1187
              + +L +    P G     LS GQK+++A+ R  +    + LLDE   ALD  S   ++
Sbjct: 114  --LFSLEHLIDYPCG----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII 167

Query: 1188 QEALERLMRGRTTVLVAHR 1206
             +  E   +G   +L +H+
Sbjct: 168  TKIQEHRAKGGAVLLTSHQ 186

Length = 200

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 49.7 bits (119), Expect = 8e-06
 Identities = 32/111 (28%), Positives = 58/111 (52%), Gaps = 11/111 (9%)

Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLM 550
           G+ TQ+G     LSGG +Q++ I R +L  P+IL+LDE T  +D G++  I Q   +   
Sbjct: 384 GHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK 439

Query: 551 VGRTTVVVAHRLSTIRNV-DTVAVIQQGQV---VETG--THEELIAKAGAY 595
             +  ++++  +  +  + D + V+  G V   V+T   T  E++  A  +
Sbjct: 440 KDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTTTQNEILRLASLH 490

Length = 491

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 50.0 bits (120), Expect = 8e-06
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 6/79 (7%)

Query: 1134 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER 1193
            L +  + PV E    LSGG+ QR+AIA A+ +   + LLDE ++ LD E   ++ + + R
Sbjct: 445  LEDLLERPVDE----LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRR 500

Query: 1194 LMRGR--TTVLVAHRLSTI 1210
             +     T ++V H +  I
Sbjct: 501  FIENNEKTALVVDHDIYMI 519

Length = 591

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 48.8 bits (117), Expect = 1e-05
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 16/86 (18%)

Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE--------SIVQEALDRLMVGRT 554
           +LSGG +Q+  +A+ +L NPKIL+LDE T  +D G++         +VQ+       G  
Sbjct: 405 RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-------GVA 457

Query: 555 TVVVAHRLSTIRNV-DTVAVIQQGQV 579
            +V++  L  +  + D V V+ +G++
Sbjct: 458 IIVISSELPEVLGLSDRVLVMHEGKL 483

Length = 506

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 49.3 bits (118), Expect = 1e-05
 Identities = 52/219 (23%), Positives = 100/219 (45%), Gaps = 52/219 (23%)

Query: 397 AVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN--VDIKTLQLRWLRDQIGLVNQEPALF- 453
           A++G +G+GKST++  +   Y  ++G +L     +D K+ +   L + I +V+QE  L  
Sbjct: 28  ALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSK-EALENGISMVHQELNLVL 86

Query: 454 ATTILENI----------------LYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQV 497
             ++++N+                +Y   +A   E++           I + P       
Sbjct: 87  QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELD-----------IDIDPR------ 129

Query: 498 GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-------SIVQEALDRLM 550
             +   LS  Q Q I IA+A   N KI+++DE TS+L   +E       +I+++  +R  
Sbjct: 130 -AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL---TEKEVNHLFTIIRKLKER-- 183

Query: 551 VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEEL 588
            G   V ++H++  I  + D + +++ GQ + T     L
Sbjct: 184 -GCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221

Length = 491

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 64/258 (24%), Positives = 100/258 (38%), Gaps = 66/258 (25%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL-- 1086
            K+ ++ I  G    + G SGSGKSS+I   +  Y P      +  K  +  N   +    
Sbjct: 12   KNIDVDIPLGVLTCVTGVSGSGKSSLI--NDTLY-PAL-ARRLHLKKEQPGNHDRIEGLE 67

Query: 1087 ---KIGLVQQEP--------ALFAASIFDNI-----------AYGKE-------GATEAE 1117
               K+ ++ Q P              +FD I            Y +E       G + A+
Sbjct: 68   HIDKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIAD 127

Query: 1118 V----VEAARAANVHGFVSALPNAYKT------------PVGERGVQLSGGQKQRIAIAR 1161
            V    VE A       F   +P   +              +G+    LSGG+ QRI +A+
Sbjct: 128  VLDMTVEEA-----LEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAK 182

Query: 1162 AVLK---NPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCI- 1216
             + K      + +LDE T+ L       L E L+RL+ +G T V++ H L  I+  D I 
Sbjct: 183  ELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242

Query: 1217 -----GVVQDGRIVEQGS 1229
                 G    G++V  G+
Sbjct: 243  DLGPEGGDGGGQVVASGT 260

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]

 Score = 49.5 bits (119), Expect = 1e-05
 Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 10/102 (9%)

Query: 504 LSGGQKQRIAIARAMLK---NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVA 559
           LSGG+ QR+ +A+ + K      + +LDE T+ L       + E L RL+  G T +V+ 
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882

Query: 560 HRLSTIRNVDTVAVI------QQGQVVETGTHEELIAKAGAY 595
           H L  I+  D +  +        G++V +GT EE+     +Y
Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASY 924

Length = 935

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 25/193 (12%)

Query: 376 SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ 435
           SR +  +F        AG+ + V G +G+GK+T++ ++       +G + +D        
Sbjct: 20  SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79

Query: 436 LRWLRDQ-IGLVNQEPALFAT-TILENI-----LYGKPEATMAEVEAAASAANAHSFITL 488
               R + +  +   P L A  + LEN+     L+G+         A     +A + + L
Sbjct: 80  ----RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGR--------RAKQMPGSALAIVGL 127

Query: 489 LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALD- 547
              GY   +     QLS GQK+R+A+AR  L    + LLDE  + LD    ++V   +  
Sbjct: 128 --AGYEDTLVR---QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISA 182

Query: 548 RLMVGRTTVVVAH 560
            L  G   +V  H
Sbjct: 183 HLRGGGAALVTTH 195

Length = 214

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 27/150 (18%)

Query: 1045 GASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL-------KSLRLKIGLVQQEPAL 1097
            GA+G GKSS++ +I     P++G +     +I  +          +L LK+ +       
Sbjct: 33   GANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEM------- 85

Query: 1098 FAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 1157
               ++F+N+ +  E    AE + AA    +H F           + E+   LS G ++ +
Sbjct: 86   ---TVFENLKFWSEIYNSAETLYAA----IHYF------KLHDLLDEKCYSLSSGMQKIV 132

Query: 1158 AIARAVLKNPAILLLDEATSALDAESECVL 1187
            AIAR +     + LLDE  + L  E+  +L
Sbjct: 133  AIARLIACQSDLWLLDEVETNLSKENRDLL 162

Length = 195

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 49.1 bits (117), Expect = 2e-05
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 497  VGERGVQ-LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL-DRLMVGRT 554
            VG  GV  LS  Q++R+ IA  ++ NP I+ +DE TS LDA + +IV   + + +  GRT
Sbjct: 1012 VGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1071

Query: 555  TVVVAHRLS 563
             V   H+ S
Sbjct: 1072 VVCTIHQPS 1080

Length = 1470

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 47.6 bits (114), Expect = 4e-05
 Identities = 44/186 (23%), Positives = 87/186 (46%), Gaps = 24/186 (12%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE  ++   +  +   ++  D + ++  G    ++G +G+GKS++  +I     P +G +
Sbjct: 323  IEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA--SIFDNIAYGKEGATEAEVVEAARAANV 1127
             I G+ +          K+  V Q         ++++ I+ G +     +    +RA   
Sbjct: 380  KI-GETV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA--- 425

Query: 1128 HGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 1186
              +V      +K    ++ V QLSGG++ R+ +A+ +     +LLLDE T+ LD E+   
Sbjct: 426  --YVGRF--NFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRA 481

Query: 1187 LQEALE 1192
            L+EAL 
Sbjct: 482  LEEALL 487

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 47.6 bits (114), Expect = 4e-05
 Identities = 55/218 (25%), Positives = 92/218 (42%), Gaps = 63/218 (28%)

Query: 1033 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID-GKDIRRLNLKSLRLKIGLV 1091
            L I   +   LVG +G+GKS+++ ++        G+V++D G+ I   +L   RL     
Sbjct: 24   LHIEDNERVCLVGRNGAGKSTLMKIL-------NGEVLLDDGRIIYEQDLIVARL----- 71

Query: 1092 QQEPALFAA-SIFDNIAYGKEGATEA---------------------------EVVEAA- 1122
            QQ+P      +++D +A G E   E                            E ++   
Sbjct: 72   QQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHN 131

Query: 1123 ------RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 1176
                  R   V   +   P+     +      LSGG  ++ A+ RA++ NP +LLLDE T
Sbjct: 132  LWQLENRINEVLAQLGLDPD---AALSS----LSGGWLRKAALGRALVSNPDVLLLDEPT 184

Query: 1177 SALDAESECVLQEALERLM---RGRTTVLVAHRLSTIR 1211
            + LD E+     E LE  +   +G + + ++H  S IR
Sbjct: 185  NHLDIET----IEWLEGFLKTFQG-SIIFISHDRSFIR 217

Length = 635

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 47.5 bits (114), Expect = 4e-05
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 26/104 (25%)

Query: 1130 FVSALPNAYKTPVG-------ERGV-------------------QLSGGQKQRIAIARAV 1163
            +V  +P  +K  V        ERG                    +LSGG+ QR+AIA A+
Sbjct: 168  YVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAAL 227

Query: 1164 LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 1207
            L++      DE TS LD      +   +  L  G+  ++V H L
Sbjct: 228  LRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL 271

Length = 590

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 47.6 bits (114), Expect = 4e-05
 Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 49/199 (24%)

Query: 369 NVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN 428
           N+T  + ++P   +F + S+ F  G    ++G +G GKST + ++    +P+AG+V LD 
Sbjct: 6   NITMQFGAKP---LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP 62

Query: 429 VDIKTLQLRWLR-DQIGLVNQ---------EPALFATTILENILYGKPEAT------MAE 472
                 +L  LR DQ                  L+      + +Y  PE +      +A+
Sbjct: 63  ----NERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVAD 118

Query: 473 VEAAASAANAHSFITLLPNGYSTQ--VGE--RGV------------QLSGGQKQRIAIAR 516
           +E          F  +  +GY+ +   GE   GV            +++ G K R+ +A+
Sbjct: 119 LEVK--------FAEM--DGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQ 168

Query: 517 AMLKNPKILLLDEATSALD 535
           A+  NP ILLLDE T+ LD
Sbjct: 169 ALFSNPDILLLDEPTNNLD 187

Length = 530

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 47.7 bits (114), Expect = 4e-05
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 10/103 (9%)

Query: 1141 PVGERGVQLSGGQKQRIAIARAVLK---NPAILLLDEATSALDAESECVLQEALERLM-R 1196
             +G+    LSGG+ QRI +A+ + K      + +LDE T+ L  +    L E L+RL+ +
Sbjct: 822  RLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDK 881

Query: 1197 GRTTVLVAHRLSTIRGVDCI------GVVQDGRIVEQGSHSEL 1233
            G T V++ H L  I+  D I      G    G +V  G+  E+
Sbjct: 882  GNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTVVASGTPEEV 924

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 47.3 bits (113), Expect = 5e-05
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
           LSGG +Q++AIAR ++  PK+L+LDE T  +D G
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVG 429

Length = 501

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 502 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG-RTTVVVAH 560
           V  SGG+K+R  I +  +  P++ +LDE+ S LD  +  IV + ++ L  G R+ ++V H
Sbjct: 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203

Query: 561 --RLSTIRNVDTVAVIQQGQVVETGTH 585
             R+      D V V+ QG++V++G  
Sbjct: 204 YQRILDYIKPDYVHVLYQGRIVKSGDF 230

Length = 248

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 42/197 (21%), Positives = 60/197 (30%), Gaps = 59/197 (29%)

Query: 381 IIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR 440
             F    + F  G    + G +GSGKST++                              
Sbjct: 9   SYFVPNDVTFGEGSLTIITGPNGSGKSTIL------------------------------ 38

Query: 441 DQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGER 500
           D IGL        A +        K    +A V A          I              
Sbjct: 39  DAIGLA----LGGAQSATRRRSGVKAGCIVAAVSA--------ELIFTRL---------- 76

Query: 501 GVQLSGGQKQRIAIARAM---LKNPKIL-LLDEATSALDAGSESIVQEALDRLMVGRTTV 556
             QLSGG+K+  A+A  +      P+ L +LDE    LD      + EA+   +V    V
Sbjct: 77  --QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134

Query: 557 VVA-HRLSTIRNVDTVA 572
           +V  H        D + 
Sbjct: 135 IVITHLPELAELADKLI 151

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 46.2 bits (110), Expect = 9e-05
 Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 24/212 (11%)

Query: 392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---QLR------WLRDQ 442
           AG + A VG +GSGKS +   +       +G        I  L   QL+      W R+ 
Sbjct: 28  AGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNN 87

Query: 443 IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV 502
             +++        T  E I     +    E  A         F      G +  +  R  
Sbjct: 88  TDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQ-------QF------GITALLDRRFK 134

Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-GRTTVVVAHR 561
            LS G+ ++  + +A++  P +L+LDE    LD  S   + E L  L   G T V+V +R
Sbjct: 135 YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194

Query: 562 LSTIRN-VDTVAVIQQGQVVETGTHEELIAKA 592
              I + V    V+    + ETG  EE++ +A
Sbjct: 195 FDEIPDFVQFAGVLADCTLAETGEREEILQQA 226

Length = 490

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 46.3 bits (110), Expect = 9e-05
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 11/96 (11%)

Query: 1137 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD--AESECVLQEALERL 1194
             ++T +G     LSGG +Q++ I R +L  P IL+LDE T  +D  A+ E + Q   E  
Sbjct: 384  GHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFE-IYQLIAELA 438

Query: 1195 MRGRTTVLVAHRLSTIRGV-DCIGVVQDGR---IVE 1226
             + +  ++++  +  + G+ D I V+ +G    IV+
Sbjct: 439  KKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVD 474

Length = 491

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 45.8 bits (109), Expect = 1e-04
 Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 34/217 (15%)

Query: 383 FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY---DPNAGHVLLDNVDIKTLQLRWL 439
           FR+ S+   AG+ + + G  G+G++    L E  Y       G ++L+  +I  L     
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRT---ELAETLYGLRPARGGRIMLNGKEINALSTA-Q 334

Query: 440 RDQIGLV-----NQEPALF----------ATTILENILYGKPEATMAEVEAAASAANAHS 484
           R   GLV      Q   L+          A T      + KP    A +E    A N   
Sbjct: 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALN--- 391

Query: 485 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE 544
            I    N            LSGG +Q++ IA+ +  +P++L++DE T  +D  + + + +
Sbjct: 392 -IKF--NHAEQAAR----TLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQ 444

Query: 545 ALDRLMVGRTTVV-VAHRLSTIRNV-DTVAVIQQGQV 579
            +  +      V+ ++  L  I  + D V V+ QG++
Sbjct: 445 LIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481

Length = 510

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 45.9 bits (109), Expect = 1e-04
 Identities = 55/236 (23%), Positives = 106/236 (44%), Gaps = 46/236 (19%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERF-YDPTA-GKVMIDGKDIR-RLNLKSLR 1085
            +D +  +  G+     G  GSG++ ++  +  F  D  A G++ ++GKDI  R  L +++
Sbjct: 280  RDISFSVCRGEILGFAGLVGSGRTELMNCL--FGVDKRAGGEIRLNGKDISPRSPLDAVK 337

Query: 1086 LKIGLV---QQEPALFAA-SIFDNIAY-------GKEGA-------TEAEVVEAARAANV 1127
              +  +   +++   F   SI  N+A        G +GA        E    E  R    
Sbjct: 338  KGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRE--- 394

Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD--AESEC 1185
                  L       V +   +LSGG +Q++ I++ +   P +++ DE T  +D  A++E 
Sbjct: 395  ------LLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAE- 447

Query: 1186 VLQEALERLMR-----GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVS 1235
                 + ++MR     G+  ++V+  L  I  V D I V  +GR+ +  ++ + +S
Sbjct: 448  -----IYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMS 498

Length = 510

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 45.7 bits (109), Expect = 1e-04
 Identities = 57/240 (23%), Positives = 114/240 (47%), Gaps = 35/240 (14%)

Query: 1008 GEI--ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT 1065
            GE+  E+R++    P  P +    D +  +R G+   + G  G+G++ ++  +   Y P 
Sbjct: 256  GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY-PG 314

Query: 1066 A--GKVMIDGKDIR-RLNLKSLRLKIGLVQQE-------PALFAASIFDNI--AYGKEGA 1113
               G++ IDGK ++ R   +++   I +V ++       P +    +  NI  A      
Sbjct: 315  RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM---GVGKNITLAALDRFT 371

Query: 1114 TEAEVVEAARAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLL 1172
              + + +AA    +   +  L    KT   E  + +LSGG +Q+  +A+ +L NP IL+L
Sbjct: 372  GGSRIDDAAELKTILESIQRL--KVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILIL 429

Query: 1173 DEATSALD--AESECVLQEALERLM-----RGRTTVLVAHRLSTIRGV-DCIGVVQDGRI 1224
            DE T  +D  A+ E      + +L+     +G   ++++  L  + G+ D + V+ +G++
Sbjct: 430  DEPTRGIDVGAKYE------IYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483

Length = 506

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 42/185 (22%), Positives = 76/185 (41%), Gaps = 36/185 (19%)

Query: 1030 DFNLRIRAG---QSQAL--VGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 1084
            +F L +  G   +S+ +  +G +G GK++ I ++     P  G + I+   +   + K  
Sbjct: 12   EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV---SYKPQ 68

Query: 1085 RLKI---GLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYK-T 1140
             +K    G V+       +SI  +                        F + +    +  
Sbjct: 69   YIKADYEGTVRD----LLSSITKD------------------FYTHPYFKTEIAKPLQIE 106

Query: 1141 PVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-MRGR 1198
             + +R V +LSGG+ QR+AIA  + K+  I LLDE ++ LD E   +  + + R      
Sbjct: 107  QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE 166

Query: 1199 TTVLV 1203
             T  V
Sbjct: 167  KTAFV 171

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 45.1 bits (107), Expect = 1e-04
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 495 TQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-G 552
             V +R + QLSGG+ QR+AIA A+ ++      DE +S LD          +  L    
Sbjct: 130 RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDD 189

Query: 553 RTTVVVAHRLS 563
              +VV H L+
Sbjct: 190 NYVLVVEHDLA 200

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 504 LSGGQKQRIAIARAMLKNPK--ILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAH 560
           LSGG+ QR+ +A  +   P   + +LDE ++ L     + + E +  L+ +G T +++ H
Sbjct: 88  LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147

Query: 561 RLSTIRNVDTV 571
            L  + + D +
Sbjct: 148 NLDVLSSADWI 158

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 45.2 bits (107), Expect = 2e-04
 Identities = 57/267 (21%), Positives = 115/267 (43%), Gaps = 37/267 (13%)

Query: 352 PTNGRCLDEVNGNI--EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTV 409
                 +  +      E +NVT       D    RD S     G+ +   G  GSG++ +
Sbjct: 251 NAMKENVSNLAHETVFEVRNVT-----SRDRKKVRDISFSVCRGEILGFAGLVGSGRTEL 305

Query: 410 VSLIERF-YDPNA-GHVLLDNVDIK-TLQLRWLRDQIGLVNQ---EPALFAT-TILENIL 462
           ++ +  F  D  A G + L+  DI     L  ++  +  + +   +   F   +I +N+ 
Sbjct: 306 MNCL--FGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMA 363

Query: 463 ---------YGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIA 513
                    Y        EV+   +A N    + L  +  +  + E    LSGG +Q++ 
Sbjct: 364 ISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITE----LSGGNQQKVL 419

Query: 514 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNV-DTV 571
           I++ +   P++++ DE T  +D G+++ + + + +L   G+  ++V+  L  I  V D +
Sbjct: 420 ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRI 479

Query: 572 AVIQQGQVVE------TGTHEELIAKA 592
           AV  +G++ +        + EE++A A
Sbjct: 480 AVFCEGRLTQILTNRDDMSEEEIMAWA 506

Length = 510

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 45.1 bits (108), Expect = 2e-04
 Identities = 57/202 (28%), Positives = 88/202 (43%), Gaps = 51/202 (25%)

Query: 349 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKST 408
           I  P   R  D+V   IE +N++ S+  R   ++  D S   P G  V ++G +G+GKST
Sbjct: 312 IFIPPGPRLGDKV---IEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKST 365

Query: 409 VVSLIERFYDPNAGHVLL-DNVDIKTLQLRWLRDQIGLVNQ-----EPALFATTILENIL 462
           +  +I     P++G + + + V            ++  V+Q     +P     T+ E I 
Sbjct: 366 LFKMITGQEQPDSGTIKIGETV------------KLAYVDQSRDALDP---NKTVWEEIS 410

Query: 463 YGKPEATMAEVE----AAASAANAHSFITLLPNGYSTQ--VGERGVQLSGGQKQRIAIAR 516
            G     +   E    A     N   F      G   Q  VG     LSGG++ R+ +A+
Sbjct: 411 GGLDIIKVGNREIPSRAYVGRFN---F-----KGGDQQKKVG----VLSGGERNRLHLAK 458

Query: 517 AMLK---NPKILLLDEATSALD 535
             LK   N  +LLLDE T+ LD
Sbjct: 459 -TLKQGGN--VLLLDEPTNDLD 477

Length = 556

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 44.9 bits (107), Expect = 2e-04
 Identities = 17/32 (53%), Positives = 24/32 (75%)

Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALD 535
           LSGG  ++ A+ RA++ NP +LLLDE T+ LD
Sbjct: 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188

Length = 635

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 44.8 bits (107), Expect = 2e-04
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)

Query: 1134 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER 1193
            L       V +    LSGG+ QR+AIA  + ++  + LLDE ++ LD E    + +A+ R
Sbjct: 443  LERLLDKNVKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498

Query: 1194 LMRGR-TTVLV 1203
            +   R  T LV
Sbjct: 499  IAEEREATALV 509

Length = 590

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 45.4 bits (108), Expect = 2e-04
 Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 57/214 (26%)

Query: 383 FRDFSIFFP-AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 441
           F+ + +  P  GK V ++G +G GKST + ++     PN G       +       W  D
Sbjct: 89  FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLG-----RYEDPP---SW--D 138

Query: 442 QIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVG--- 498
           ++  + +    F  T L+N             E    A +   ++ L+P     +VG   
Sbjct: 139 EV--IKR----FRGTELQNYFKKL-------YEGELRAVHKPQYVDLIPKVVKGKVGELL 185

Query: 499 ----ERGV-------------------QLSGGQKQRIAIARAMLKNPKILLLDEATSALD 535
               ERG                    +LSGG+ QR+AIA A+L++  +   DE +S LD
Sbjct: 186 KKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD 245

Query: 536 AGSE----SIVQEALDRLMVGRTTVVVAHRLSTI 565
                    +++E  +    G+  +VV H L+ +
Sbjct: 246 IRQRLNAARVIRELAED---GKYVIVVEHDLAVL 276

Length = 591

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score = 45.6 bits (108), Expect = 2e-04
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 1142 VGERGVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRT 1199
            VG  GV  LS  Q++R+ IA  ++ NP+I+ +DE TS LDA +  ++   +   +  GRT
Sbjct: 1012 VGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1071

Query: 1200 TVLVAHRLS 1208
             V   H+ S
Sbjct: 1072 VVCTIHQPS 1080

Length = 1470

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 46/202 (22%), Positives = 77/202 (38%), Gaps = 37/202 (18%)

Query: 1028 FKDFNLRI-RAGQSQALVGASGSGKSSVIALIE--------RFYDPTAGKVMIDG----- 1073
            FK   L + R GQ   LVG +G GKS+ + ++         +F DP     ++D      
Sbjct: 15   FKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSE 74

Query: 1074 -----KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVH 1128
                   +   ++K +  K   V   P      + + +    E     E+V+        
Sbjct: 75   LQNYFTKLLEGDVKVIV-KPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLEL---- 129

Query: 1129 GFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
                         V +R + QLSGG+ QR+AIA A+ ++      DE +S LD +     
Sbjct: 130  -----------RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNA 178

Query: 1188 QEALERLMR-GRTTVLVAHRLS 1208
               +  L       ++V H L+
Sbjct: 179  ARLIRELAEDDNYVLVVEHDLA 200

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 45.5 bits (108), Expect = 2e-04
 Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 52/204 (25%)

Query: 1035 IRAGQSQALVGASGSGKSSVI-ALIERFYDP--TAGKVMIDGKDIRRLNLKSLRLKIGLV 1091
            ++ G   AL+GASG+GK++++  L ER      T G  +++G+ +      S +  IG V
Sbjct: 786  VKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYV 841

Query: 1092 QQ-----------EPALFAA--------SIFDNIAYGKEGATEAEVVEAARAANVHGFVS 1132
            QQ           E   F+A        S  + + Y         V E  +   +  +  
Sbjct: 842  QQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEY---------VEEVIKLLEMESYAD 892

Query: 1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILL-LDEATSALDAESECVLQEAL 1191
            A+       VG  G  L+  Q++R+ I   ++  P +LL LDE TS LD+++      ++
Sbjct: 893  AV-------VGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAW----SI 941

Query: 1192 ERLMR-----GRTTVLVAHRLSTI 1210
             +LMR     G+  +   H+ S I
Sbjct: 942  CKLMRKLADHGQAILCTIHQPSAI 965

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 44.6 bits (106), Expect = 3e-04
 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 27/108 (25%)

Query: 1130 FVSALPNAYKTPVG-------ERGV-------------------QLSGGQKQRIAIARAV 1163
            +V  +P   K  VG       ERG                    +LSGG+ QR+AIA A+
Sbjct: 169  YVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAAL 228

Query: 1164 LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVA-HRLSTI 1210
            L++  +   DE +S LD          +  L      V+V  H L+ +
Sbjct: 229  LRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVL 276

Length = 591

>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]

 Score = 45.3 bits (108), Expect = 3e-04
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 13/106 (12%)

Query: 1149 LSGGQKQRIAIARAVLK---NPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVA 1204
            LSGG+ QR+ +A+ + K      + +LDE T+ L  +    L E L RL+ +G T +++ 
Sbjct: 823  LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882

Query: 1205 HRLSTIRGVDCI------GVVQDGRIVEQGSHSELVSRPD---GAY 1241
            H L  I+  D I      G    G IV  G+  E+        G Y
Sbjct: 883  HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKY 928

Length = 935

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 9/89 (10%)

Query: 1149 LSGGQKQRIAIARAVLKNP--AILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAH 1205
            LSGG+ QR+ +A  +   P   + +LDE ++ L  +    L E ++ L+  G T +L+ H
Sbjct: 88   LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147

Query: 1206 RLSTIRGVDCI------GVVQDGRIVEQG 1228
             L  +   D I           G++V  G
Sbjct: 148  NLDVLSSADWIIDFGPGSGKSGGKVVFSG 176

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 44.1 bits (104), Expect = 4e-04
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 6/84 (7%)

Query: 1122 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
            ARAA++   +S  P        +     SGG + RIA+ARA+   P +LLLDE T+ LD 
Sbjct: 322  ARAASILAGLSFTPEMQV----KATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDL 377

Query: 1182 ESECVLQEALERLMRGRTTVLVAH 1205
             +   L+  L  L   +T ++V+H
Sbjct: 378  HAVLWLETYL--LKWPKTFIVVSH 399

Length = 718

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 44.4 bits (106), Expect = 4e-04
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR--TTVVVAHR 561
           LSGG+ QR+AIA  + ++  + LLDE ++ LD      V +A+ R+   R  T +VV H 
Sbjct: 454 LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHD 513

Query: 562 LSTI 565
           +  I
Sbjct: 514 IYMI 517

Length = 590

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 44.2 bits (105), Expect = 5e-04
 Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 14/98 (14%)

Query: 504 LSGGQKQRIAIARAMLK---NPKILLLDEATSALDAGSESIVQ--EALDRLM-VGRTTVV 557
           LSGG+ QRI +A+ + K      + +LDE T+ L    + I +  E L RL+  G T VV
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLH--FDDIKKLLEVLQRLVDKGNTVVV 887

Query: 558 VAHRLSTIRNVDTVAVI------QQGQVVETGTHEELI 589
           + H L  I+  D +  +        G VV +GT EE+ 
Sbjct: 888 IEHNLDVIKTADYIIDLGPEGGDGGGTVVASGTPEEVA 925

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 43.6 bits (103), Expect = 6e-04
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 1142 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTV 1201
            V E   + SGG+K R+ +A  V + P +LLLDE T+ LD +    L EAL     G   V
Sbjct: 424  VTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-EG-ALV 481

Query: 1202 LVAHRLSTIRG-VDCIGVVQDGRI 1224
            +V+H    +R   D + +V DG++
Sbjct: 482  VVSHDRHLLRSTTDDLYLVHDGKV 505

Length = 638

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 43.9 bits (104), Expect = 6e-04
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 5/47 (10%)

Query: 493 YSTQVGE---RGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
            +T+VG    RGV  SGG+++R++IA A L   KI   D AT  LD+
Sbjct: 198 RNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 43.6 bits (103), Expect = 7e-04
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 496 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTT 555
           +V E   + SGG+K R+ +A  + + P +LLLDE T+ LD      + EAL  +      
Sbjct: 423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDFEGAL 480

Query: 556 VVVAHRLSTIRN-VDTVAVIQQGQV 579
           VVV+H    +R+  D + ++  G+V
Sbjct: 481 VVVSHDRHLLRSTTDDLYLVHDGKV 505

Length = 638

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 43.5 bits (103), Expect = 8e-04
 Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 35/196 (17%)

Query: 1003 VETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY 1062
            ++   GE+ L+  + + P   DV     F LR   G+   + G  G+G++ ++ ++    
Sbjct: 249  LDKAPGEVRLKVDNLSGPGVNDV----SFTLR--KGEILGVSGLMGAGRTELMKVLYGAL 302

Query: 1063 DPTAGKVMIDGKDIRRLN---------------LKSLRLKIGL-VQQEPALFAASIFDNI 1106
              T+G V +DG ++   +                K   L +G+ V++  +L A   F   
Sbjct: 303  PRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRA 362

Query: 1107 AYGKEGATEAEVVEA-ARAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVL 1164
                + A E + V    R  N+           KTP  E+ +  LSGG +Q++AIAR ++
Sbjct: 363  GGSLKHADEQQAVSDFIRLFNI-----------KTPSMEQAIGLLSGGNQQKVAIARGLM 411

Query: 1165 KNPAILLLDEATSALD 1180
              P +L+LDE T  +D
Sbjct: 412  TRPKVLILDEPTRGVD 427

Length = 501

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 42.5 bits (100), Expect = 8e-04
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG-RTTVLVAH 1205
            V  SGG+K+R  I +  +  P + +LDE+ S LD ++  ++ + +  L  G R+ ++V H
Sbjct: 144  VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203

Query: 1206 --RLSTIRGVDCIGVVQDGRIVEQGSHS 1231
              R+      D + V+  GRIV+ G  +
Sbjct: 204  YQRILDYIKPDYVHVLYQGRIVKSGDFT 231

Length = 248

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 1/140 (0%)

Query: 83  VCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTG 142
           V   A  +V L L+     YA+   +       V  LR   ++A L+Q +  FDT    G
Sbjct: 64  VAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQP-VG 122

Query: 143 DIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAG 202
            ++  V+ DT +++D     V   +   +   A LV  F   WR+AL++I + P +    
Sbjct: 123 QLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVM 182

Query: 203 GLYAYTLTGLTSKSRESYAN 222
            +Y    T +  + R   A+
Sbjct: 183 VIYQRYSTPIVRRVRAYLAD 202

Length = 592

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 42.3 bits (100), Expect = 0.001
 Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 4/60 (6%)

Query: 504 LSGGQKQRIA-IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-GRTTVV-VAH 560
           LS GQ QR+A I RA++K+P +L+LDE    LD  +  +V+  +D L+  G T ++ V+H
Sbjct: 402 LSWGQ-QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSH 460

Length = 490

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 42.5 bits (100), Expect = 0.001
 Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 30/191 (15%)

Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG--------KDIRRLNLKSLRL 1086
            I  GQ   LVG +G GKS+++AL++       G     G        ++   L   +L  
Sbjct: 24   INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEY 83

Query: 1087 KIG----LVQQEPALFAASIFDN---IA--YGKEGATEAEVVEAARAANVHGFVSALPNA 1137
             I       Q E  L  A+  ++   IA  +GK  A +A  + +  A+ +HG        
Sbjct: 84   VIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL------G 137

Query: 1138 YKTPVGERGVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 1196
            +     ER V   SGG + R+ +A+A++    +LLLDE T+ LD ++  V+   LE+ ++
Sbjct: 138  FSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDA--VIW--LEKWLK 193

Query: 1197 GR--TTVLVAH 1205
                T +L++H
Sbjct: 194  SYQGTLILISH 204

Length = 638

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 42.6 bits (101), Expect = 0.001
 Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 42/209 (20%)

Query: 1007 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 1066
            R  +E+ ++   + + P   +FK+ NL + AG+  A++G +G GK++++  +    +P +
Sbjct: 317  RNALEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS 373

Query: 1067 GKVMIDGKDIRRLNLK-SLRLKIGLVQQEPAL-FAA--SIFDNIA-YGKEGATEAEVVEA 1121
            G V            K S    IG   Q+ A  F    ++FD ++ + +EG  E    +A
Sbjct: 374  GTV------------KWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDE----QA 417

Query: 1122 ARAANVHGFVSALPNAYKTPV-----GERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 1176
             R        S   +  K  V     GE+G  L G         + +++ P +L++DE T
Sbjct: 418  VRGTLGRLLFSQ--DDIKKSVKVLSGGEKGRMLFG---------KLMMQKPNVLVMDEPT 466

Query: 1177 SALDAESECVLQEALERLMRGRTTVLVAH 1205
            + +D ES   L  ALE    G T + V+H
Sbjct: 467  NHMDMESIESLNMALE-KYEG-TLIFVSH 493

Length = 530

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 42.2 bits (100), Expect = 0.002
 Identities = 16/60 (26%), Positives = 38/60 (63%), Gaps = 3/60 (5%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E +N+T  + + P   +F++ ++   AG+ +A++G +G GK+T++  +    +P++G V
Sbjct: 320 LEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376

Length = 530

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALI--ERFYDPTAGKVMIDGKDIRRL 1079
            + +  NL +R G+  A++G +GSGKS++ A +     Y+ T G V   GKD+  L
Sbjct: 16   ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLEL 70

Length = 248

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 42.0 bits (99), Expect = 0.002
 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 1121 AARAANVHGFVSALPNAYKTPVGE---RGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 1177
            A   A+V+     L +   T VG    RGV  SGG+++R++IA A L    I   D AT 
Sbjct: 181  AKHIADVYMATYGLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATR 238

Query: 1178 ALDAESECVLQEALERLMR-GRTTVLVA 1204
             LD+ +      AL+       TT LVA
Sbjct: 239  GLDSATALEFIRALKTSANILDTTPLVA 266

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 33/237 (13%)

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 444
           D S+    G  + +VG +GSGKST+ ++I     P  G V  +  ++  + +       G
Sbjct: 42  DISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-EVSVIAI-----SAG 95

Query: 445 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQ- 503
           L  Q       T +ENI +          E  A       F         +++GE   Q 
Sbjct: 96  LSGQ------LTGIENIEFKMLCMGFKRKEIKAMTPKIIEF---------SELGEFIYQP 140

Query: 504 ---LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM----VGRTTV 556
               S G + ++  +  +  NP IL++DE   AL  G ++  Q+ LD++       +T  
Sbjct: 141 VKKYSSGMRAKLGFSINITVNPDILVIDE---ALSVGDQTFAQKCLDKIYEFKEQNKTIF 197

Query: 557 VVAHRLSTIRNVDT-VAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFAN 612
            V+H L  +R   T +A I+ G++ + G  ++++ K  A+ +  + +     ++F N
Sbjct: 198 FVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDFKKKSKAEQKEFRN 254

Length = 264

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 54/177 (30%)

Query: 1042 ALVGASGSGKSSVIALIERFY------DPTAGKVMIDGKDIR--------RLNLKSLRLK 1087
             +VG +G+GK+++I  +   Y       P +     D K IR        +L  ++   K
Sbjct: 26   LIVGQNGAGKTTIIEAL--KYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGK 83

Query: 1088 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGV 1147
               + +  A     I +N+ +  +G +   +++                        RG 
Sbjct: 84   KYTITRSLA-----ILENVIFCHQGESNWPLLD-----------------------MRG- 114

Query: 1148 QLSGGQKQ------RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR 1198
            + SGG+K       R+A+A     N  IL LDE T+ LD E+   ++E+L  ++  R
Sbjct: 115  RCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN---IEESLAEIIEER 168

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 41.1 bits (97), Expect = 0.004
 Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 11/115 (9%)

Query: 479 AANAHSFITLL----PNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
           A NA  FI  L    P+     +      LSGG +Q+  + R + ++ K++LLDE T  +
Sbjct: 373 AENADRFIRSLNIKTPSR-EQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGI 427

Query: 535 DAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEE 587
           D G++  +   +  L   G   + V+  L  +  V D + V+++G++      E+
Sbjct: 428 DVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482

Length = 501

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 41.0 bits (97), Expect = 0.004
 Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 4/43 (9%)

Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL 546
           LSGG+K R+   + M++ P +L++DE T+ +D   ESI  E+L
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDM--ESI--ESL 477

Length = 530

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 41.2 bits (97), Expect = 0.004
 Identities = 53/209 (25%), Positives = 96/209 (45%), Gaps = 13/209 (6%)

Query: 366 EFKNVTFSYP-SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVS-LIERFYDPNAGH 423
            ++N+T+     +   +I  +   +   G   A++G SG+GK+T+++ L ER      G 
Sbjct: 761 HWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERV---TTGV 817

Query: 424 VLLDN--VDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAA 480
           +   +  V+ + L   + R  IG V Q+     T T+ E++ +         V  +    
Sbjct: 818 ITGGDRLVNGRPLDSSFQR-SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKME 876

Query: 481 NAHSFITLLP-NGYSTQ-VGERGVQLSGGQKQRIAIARAMLKNPKILL-LDEATSALDAG 537
                I LL    Y+   VG  G  L+  Q++R+ I   ++  PK+LL LDE TS LD+ 
Sbjct: 877 YVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQ 936

Query: 538 SESIVQEALDRLM-VGRTTVVVAHRLSTI 565
           +   + + + +L   G+  +   H+ S I
Sbjct: 937 TAWSICKLMRKLADHGQAILCTIHQPSAI 965

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 41.3 bits (97), Expect = 0.004
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 1148 QLSGGQKQ------RIAIARAVLKNPAI--LLLDEATSALDAESECVLQEALERL-MRGR 1198
             LSGG++       R+A++  +     +  L LDE    LD E    L E LE L   GR
Sbjct: 815  TLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGR 874

Query: 1199 TTVLVAH 1205
              ++++H
Sbjct: 875  QIIIISH 881

Length = 908

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1252
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	100.0
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
KOG0927	614	consensus Predicted transporter (ABC superfamily)	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	100.0
KOG0062	582	consensus ATPase component of ABC transporters wit	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG4178	604	ABC-type uncharacterized transport system, permeas	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG4178	604	ABC-type uncharacterized transport system, permeas	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
PRK00635	1809	excinuclease ABC subunit A; Provisional	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.8e-205  Score=1864.19  Aligned_cols=1216  Identities=52%  Similarity=0.875  Sum_probs=1115.8

Q ss_pred             CchHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000856           23 SLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSY  102 (1252)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (1252)
                      ..++.++++|..+.++.++++|.+++++.|+..|++++++++++|.+..... . ...+....+++++++++++.+++.|
T Consensus        12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~-~-~~~~~~~~~~l~~~~lg~~~~~~~~   89 (1228)
T KOG0055|consen   12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTN-K-IASSEVSKVALYFVYLGVGVFISGF   89 (1228)
T ss_pred             ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccc-h-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6679999999999999999999999999999999999999999999876542 2 2235677899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          103 AEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFV  182 (1252)
Q Consensus       103 ~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~  182 (1252)
                      ++..||.+.++|+..++|.+++++++|++++|||.+ .+|++.+++++|++.+++++++.++.+++.+.++++++++.|+
T Consensus        90 ~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~  168 (1228)
T KOG0055|consen   90 IQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFY  168 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999976 6799999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Q 000856          183 SAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGY  262 (1252)
Q Consensus       183 ~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~  262 (1252)
                      ..|+|+++++.+.|++.+...++.+.+.+.+.+.+++++++.+++.|++.++|||.+|+.|+++.+||.+..+...+...
T Consensus       169 ~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi  248 (1228)
T KOG0055|consen  169 YGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGI  248 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          263 KAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEII  342 (1252)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l  342 (1252)
                      +...+.++..++.+++.++++++.+|||+.++..+..++|++++.++.++.....+++..+.+..+..+++|+.+|++.+
T Consensus       249 ~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i  328 (1228)
T KOG0055|consen  249 KKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETI  328 (1228)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHh
Confidence            99999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 000856          343 KQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG  422 (1252)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G  422 (1252)
                      +..|..++....+......++.|+|+||+|+||++++.++|+|+||+|++|+.+||||||||||||++++|.|+|+|++|
T Consensus       329 ~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G  408 (1228)
T KOG0055|consen  329 DRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSG  408 (1228)
T ss_pred             cCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCc
Confidence            99887765443333444567899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCC
Q 000856          423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV  502 (1252)
Q Consensus       423 ~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~  502 (1252)
                      +|++||.|+++++.+|+|++||.|.|+|.||++||+|||.||+|+++.+++.++++.+++++|+..+|+|++|.+||+|.
T Consensus       409 ~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~  488 (1228)
T KOG0055|consen  409 EVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV  488 (1228)
T ss_pred             eEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEe
Q 000856          503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET  582 (1252)
Q Consensus       503 ~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~  582 (1252)
                      +|||||||||||||||+++|+||||||||||||+++++.++++|++.++|+|.|+|+||++++++||+|++|++|+|+|.
T Consensus       489 qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~  568 (1228)
T KOG0055|consen  489 QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ  568 (1228)
T ss_pred             CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChHHHHhcccchHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCccccccccccc
Q 000856          583 GTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAET  662 (1252)
Q Consensus       583 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  662 (1252)
                      |+|+||++..|.|.++++.|+...+.+..++..+.......+...+.....     ..+.. ..........+ ..+.++
T Consensus       569 G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~-----~~~~~-~~~~~~~~~~~-~e~~~~  641 (1228)
T KOG0055|consen  569 GTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPS-----LSRGS-NRSNLLSVKPE-GEDPEE  641 (1228)
T ss_pred             cCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhcccccccccc-----ccCCc-ccccccccccc-cccccc
Confidence            999999999999999999997655322100000000000000000000000     00000 00000000000 000000


Q ss_pred             ccCCCCCchHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHH
Q 000856          663 DRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAV  742 (1252)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  742 (1252)
                      ..........+++++++++|.|++++++.+.+++.|+..|++++.++..+..+...++.........|.++|+++++...
T Consensus       642 ~~~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~  721 (1228)
T KOG0055|consen  642 PVSEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSG  721 (1228)
T ss_pred             ccccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            00111145678999999999999999999999999999999999999999988866555444444569999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          743 VAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSF  822 (1252)
Q Consensus       743 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~  822 (1252)
                      +..++++|++.+.+++++.|+|..+|+++++++++|||.+++. |.+.+|+.+|...++..+...+..+++++.+++.++
T Consensus       722 i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~i  800 (1228)
T KOG0055|consen  722 ITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGI  800 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhH
Q 000856          823 IVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVP  902 (1252)
Q Consensus       823 i~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~  902 (1252)
                      ++.|+++|++++++++++|++++..+.+.+.+.....+......+......|++++++||++|+.|+++.+.|.+.++..
T Consensus       801 iiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p  880 (1228)
T KOG0055|consen  801 IIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKP  880 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          903 QSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGS  982 (1252)
Q Consensus       903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r  982 (1252)
                      .+...++..+.++.+++++.+.++..++++|+|.+++..|.+++.+++.++.++.+....+.+..++.|++.++..++.+
T Consensus       881 ~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~  960 (1228)
T KOG0055|consen  881 RKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGS  960 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccC
Q 000856          983 VFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus       983 i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~ 1062 (1252)
                      +++++++++..+++.+.....++.+|+|+|+||+|+||++|+.+||+|+||+|++|+.+||||||||||||++.+|.|||
T Consensus       961 iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY 1040 (1228)
T KOG0055|consen  961 IFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY 1040 (1228)
T ss_pred             HHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            99999998877665433333456789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEEECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCcc
Q 000856         1063 DPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPV 1142 (1252)
Q Consensus      1063 ~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~v 1142 (1252)
                      +|++|.|.|||+||++++++.||++|++|.|||.||++||||||.||.++++++|+.+|++.+++|+||.+||+||||+|
T Consensus      1041 dp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~v 1120 (1228)
T KOG0055|consen 1041 DPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRV 1120 (1228)
T ss_pred             CCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCcc
Confidence            99999999999999999999999999999999999999999999999666899999999999999999999999999999


Q ss_pred             CCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCC
Q 000856         1143 GERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDG 1222 (1252)
Q Consensus      1143 ge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G 1222 (1252)
                      ||+|.+||||||||||||||++|||+||||||||||||.++|+.+|++|++...|||+|+|||||+|+++||.|+|++||
T Consensus      1121 GerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G 1200 (1228)
T KOG0055|consen 1121 GERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNG 1200 (1228)
T ss_pred             CcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecChhhhhcCCCchhHHHHHHhhh
Q 000856         1223 RIVEQGSHSELVSRPDGAYSRLLQLQHH 1250 (1252)
Q Consensus      1223 ~Ive~G~~~eLl~~~~g~y~~l~~~q~~ 1250 (1252)
                      +|+|.|||++|+++ +|.|++|++.|..
T Consensus      1201 ~VvE~GtH~~L~~~-~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1201 KVVEQGTHDELLAK-RGIYFRLVQLQSS 1227 (1228)
T ss_pred             EEEecccHHHHHhC-CCchHHHhhhccC
Confidence            99999999999995 9999999999863

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=5.5e-168  Score=1660.35  Aligned_cols=1213  Identities=30%  Similarity=0.494  Sum_probs=1013.5

Q ss_pred             CCchHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000856           22 QSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSS  101 (1252)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (1252)
                      .+.+|.++|+|..+.+|..++++++++++.+++.|++++++++++|.+....        ....+++++++++++.+++.
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~--------~~~~~~~~~~~~~i~~~~~~  114 (1466)
T PTZ00265         43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE--------NVNDIIFSLVLIGIFQFILS  114 (1466)
T ss_pred             ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHHHHHHHHHHHHHHHHHHH
Confidence            5567999999999888888999999999999999999999999999764211        12234556677788889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          102 YAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGF  181 (1252)
Q Consensus       102 ~~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~  181 (1252)
                      |++.+++.++++++..++|.+++++++++|++|||.. ++|++++++++|++.+++.+...+..++..+++++++++++|
T Consensus       115 ~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~  193 (1466)
T PTZ00265        115 FISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSL  193 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999975 789999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 000856          182 VSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLG  261 (1252)
Q Consensus       182 ~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~  261 (1252)
                      +++|+|++++++++|+++++..++.+++++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|.+..++..+..
T Consensus       194 ~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~  273 (1466)
T PTZ00265        194 FKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYI  273 (1466)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888888888899999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          262 YKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNG--------VTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKA  333 (1252)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  333 (1252)
                      .+.....++..++..++..+++++++|+|++++.+|        .+++|.++++++..+.....+..+.+.+..++++..
T Consensus       274 ~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~  353 (1466)
T PTZ00265        274 LKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLE  353 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888888888888888888999999999999875        578888888776666656666677778889999999


Q ss_pred             HHHHHHHHHccCCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHH
Q 000856          334 AGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLI  413 (1252)
Q Consensus       334 s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l  413 (1252)
                      |++|+.++++.+++.+. .......+. .+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|
T Consensus       354 a~~ri~~ii~~~~~~~~-~~~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL  431 (1466)
T PTZ00265        354 ATNSLYEIINRKPLVEN-NDDGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLI  431 (1466)
T ss_pred             HHHHHHHHHcCCCCCCC-CCCCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence            99999999998765432 111111111 2369999999999865445799999999999999999999999999999999


Q ss_pred             hcccCCCCcEEEE-CCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCC--------------------------
Q 000856          414 ERFYDPNAGHVLL-DNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP--------------------------  466 (1252)
Q Consensus       414 ~g~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~--------------------------  466 (1252)
                      +|+|+|++|+|.+ ||.++++++..++|++|+||+|+|.||++||+|||.+|.+                          
T Consensus       432 ~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (1466)
T PTZ00265        432 ERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKR  511 (1466)
T ss_pred             HHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccc
Confidence            9999999999999 5799999999999999999999999999999999999742                          


Q ss_pred             -------------------------------CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 000856          467 -------------------------------EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA  515 (1252)
Q Consensus       467 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lA  515 (1252)
                                                     ..+++++.++++.+++++++..+|+|++|.+|++|.+|||||||||+||
T Consensus       512 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIA  591 (1466)
T PTZ00265        512 NSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIA  591 (1466)
T ss_pred             ccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHH
Confidence                                           2346789999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhccCEEEEEeCC----------------
Q 000856          516 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQG----------------  577 (1252)
Q Consensus       516 Ral~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G----------------  577 (1252)
                      |||+++|+|||||||||+||+++++.+++.|+++.  +|+|+|+||||++++..||+|++|++|                
T Consensus       592 RAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~  671 (1466)
T PTZ00265        592 RAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPT  671 (1466)
T ss_pred             HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccc
Confidence            99999999999999999999999999999999985  489999999999999999999999986                


Q ss_pred             -------------------------------EEEEecChHHHHh-cccchHHHHHHHHhhcccCCCCC-Ccccc-ccccc
Q 000856          578 -------------------------------QVVETGTHEELIA-KAGAYASLIRFQEMVRNRDFANP-STRRS-RSTRL  623 (1252)
Q Consensus       578 -------------------------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~  623 (1252)
                                                     +|+|+|+|+||++ .+|.|+.+.+.|.........+. ..... .....
T Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~  751 (1466)
T PTZ00265        672 KDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAY  751 (1466)
T ss_pred             ccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccc
Confidence                                           5999999999998 68999999987754322110000 00000 00000


Q ss_pred             ccccccccccccccc--cccCCcc-ccCCCCcccccccccccc-c---------CCCCCchHHHHHHHhhCCchHHHHHH
Q 000856          624 SHSLSTKSLSLRSGS--LRNLSYS-YSTGADGRIEMVSNAETD-R---------KNPAPDGYFLRLLKLNAPEWPYSIMG  690 (1252)
Q Consensus       624 ~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (1252)
                      ...............  .+..... .........+. .+.+.. +         ..+.....+.++++...+.++.++++
T Consensus       752 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  830 (1466)
T PTZ00265        752 KDSERGYDPDEMNGNSKHENESASNKKSCKMSDENA-SENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTII  830 (1466)
T ss_pred             cccccccccccccccccccccccccccccccccccc-cchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHH
Confidence            000000000000000  0000000 00000000000 000000 0         00111113444455555555567788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          691 AIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAA  770 (1252)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  770 (1252)
                      ++++++.+++.++++++++.+++.++..  .........|.+++++++++..++.+++.|+..+.+.++..++|.++|++
T Consensus       831 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~  908 (1466)
T PTZ00265        831 ALSILVAGGLYPVFALLYAKYVSTLFDF--ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFEN  908 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888999999999999999876532  11222234567777778888888899999999999999999999999999


Q ss_pred             HHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          771 ILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQ  850 (1252)
Q Consensus       771 ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~p~~~~~~~~~  850 (1252)
                      ++++|++|||..++++|++++|+++|++.++..+...+..++..++.++++++++++++|.++++++++++++.......
T Consensus       909 ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~  988 (1466)
T PTZ00265        909 ILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIR  988 (1466)
T ss_pred             HHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998788999999999999999999999999999999999999999999999999887765554443332222


Q ss_pred             HHHHhhHHH--H-------------HHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000856          851 QLSLKGFAG--D-------------TAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGI  915 (1252)
Q Consensus       851 ~~~~~~~~~--~-------------~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  915 (1252)
                      .+.......  .             ..+..+.....+.|+++|+++||+|+.|+++.+++.+..+...+...+.....++
T Consensus       989 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1068 (1466)
T PTZ00265        989 ARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSM 1068 (1466)
T ss_pred             HHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111000  0             1223556788899999999999999999999999999999998888888889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000856          916 LFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDP  995 (1252)
Q Consensus       916 ~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~  995 (1252)
                      ..++..++..+..++++|+|.+++..|.+++|++++++.+......++..+.+.++++.++..+.+|++++++.+++.+.
T Consensus      1069 ~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~ 1148 (1466)
T PTZ00265       1069 LWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDV 1148 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCC
Confidence            99999999999999999999999999999999999988777666667888899999999999999999999987653321


Q ss_pred             CCCCCCC---CCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC--------
Q 000856          996 DDPDAEP---VETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-------- 1064 (1252)
Q Consensus       996 ~~~~~~~---~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-------- 1064 (1252)
                      .+.....   .....|.|+|+||+|+||++++.+||+|+||+|+||+++||||+||||||||+++|+|||+|        
T Consensus      1149 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~ 1228 (1466)
T PTZ00265       1149 RDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVF 1228 (1466)
T ss_pred             CCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccc
Confidence            1111111   12345789999999999876556899999999999999999999999999999999999999        


Q ss_pred             ----------------------------------------------CCceEEECCcccCCCCHHHHhcccEEEccccccC
Q 000856         1065 ----------------------------------------------TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALF 1098 (1252)
Q Consensus      1065 ----------------------------------------------~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~lf 1098 (1252)
                                                                    ++|+|++||+||+++++++||++|+||||||+||
T Consensus      1229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF 1308 (1466)
T PTZ00265       1229 KNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF 1308 (1466)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc
Confidence                                                          6999999999999999999999999999999999


Q ss_pred             cccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCC
Q 000856         1099 AASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178 (1252)
Q Consensus      1099 ~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~ 1178 (1252)
                      +|||||||.+|.+++++|++++|++.+++++||.+||+||||.|||+|.+|||||||||||||||+|+|+|||||||||+
T Consensus      1309 ~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSa 1388 (1466)
T PTZ00265       1309 NMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSS 1388 (1466)
T ss_pred             cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeC----CEEE-EecChhhhhcCCCchhHHHHHHh
Q 000856         1179 LDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQD----GRIV-EQGSHSELVSRPDGAYSRLLQLQ 1248 (1252)
Q Consensus      1179 LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~----G~Iv-e~G~~~eLl~~~~g~y~~l~~~q 1248 (1252)
                      ||++||+.|+++|++..  +++|+|+||||+++++.||+|+||++    |+++ |.|+|+||+++.+|.|++|++.|
T Consensus      1389 LD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265       1389 LDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred             cCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence            99999999999999884  68999999999999999999999999    9955 89999999984489999999876

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.5e-166  Score=1563.43  Aligned_cols=1102  Identities=23%  Similarity=0.309  Sum_probs=880.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCChhhhh---ccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000856          109 MYTGERQVSTLRKKYLEAVLKQDVGFFD---TDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAW  185 (1252)
Q Consensus       109 ~~~~~~~~~~lR~~~~~~i~~~~~~~~~---~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  185 (1252)
                      .+...++..++|..+...++++.+..-.   ++.++|+++|.+++|++++.++.     .+++.+|..+.-++++.++-|
T Consensus       263 ~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~-----~~~h~~w~~Plqi~~~l~lLy  337 (1381)
T KOG0054|consen  263 FFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAA-----CFLHLLWSAPLQIILALYLLY  337 (1381)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            3456788888888877777766654322   12368999999999999999975     467778877777777766666


Q ss_pred             HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 000856          186 RL----ALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLG  261 (1252)
Q Consensus       186 ~l----~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~  261 (1252)
                      ..    +++.++++.+++++..++++++++...+.++..+++.+.++|.++|||+||+|+||+.|.++.++.++++.+..
T Consensus       338 ~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~l  417 (1381)
T KOG0054|consen  338 GLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLL  417 (1381)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence            64    45566666677778889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          262 YKAGMAKGLGLGCTYGIACMSWALVFWYAGVF-IRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLME  340 (1252)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~  340 (1252)
                      +|.....++...+..++..++.+  +.++.+. ..++.+++..+|+++...-....|+..++..+..+.++.+|.+|+.+
T Consensus       418 rk~~~~~~~~~~~~~~~p~lv~~--~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~  495 (1381)
T KOG0054|consen  418 RKSAYLSALNSFLNFFSPVLVSV--VTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKE  495 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998888877776666655443  4455555 56778999999988765555566888888899999999999999999


Q ss_pred             HHccCCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 000856          341 IIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN  420 (1252)
Q Consensus       341 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~  420 (1252)
                      ++..++. +++.....+..+.+..++++|.+|+|++..+.+.|+||||+|++|+.+|||||.|||||+|+.+|+|+++..
T Consensus       496 fl~~~e~-~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~  574 (1381)
T KOG0054|consen  496 FLLSEEL-DPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL  574 (1381)
T ss_pred             HhcCccc-CccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc
Confidence            9987532 222211112223345699999999998644456999999999999999999999999999999999999999


Q ss_pred             CcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCC
Q 000856          421 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGER  500 (1252)
Q Consensus       421 ~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  500 (1252)
                      +|++.++|             .++||||+||++++||||||+||.| .+.++++++.+.|++.+|++.+|.|+.|++||+
T Consensus       575 sG~v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGEr  640 (1381)
T KOG0054|consen  575 SGSVAVNG-------------SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGER  640 (1381)
T ss_pred             cceEEEcC-------------eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCC
Confidence            99999998             5999999999999999999999986 567899999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhH-HHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEE
Q 000856          501 GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE-SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQV  579 (1252)
Q Consensus       501 g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~-~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i  579 (1252)
                      |.+|||||||||+||||+|+++||++||||+||+|+|+. +.+.++++.+.++||+|+|||+++++++||+|++|+||+|
T Consensus       641 GinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I  720 (1381)
T KOG0054|consen  641 GINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKI  720 (1381)
T ss_pred             ccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeE
Confidence            999999999999999999999999999999999999975 5556677777789999999999999999999999999999


Q ss_pred             EEecChHHHHhcccchHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCcccccccc
Q 000856          580 VETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSN  659 (1252)
Q Consensus       580 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (1252)
                      .+.|+++|+++..+.+.++.................+..   ..+...............+. .    ............
T Consensus       721 ~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~  792 (1381)
T KOG0054|consen  721 VESGTYEELLKSGGDFAELAHEEESEQEEEASEKDLESG---ESSRESESRSLESLSSEEEK-S----KDEKEEEDKLVQ  792 (1381)
T ss_pred             ecccCHHHHHhcchhHHHHhhccchhhcccccccccccc---ccccchhhhhhhhhcccccc-c----ccccchhhHHHH
Confidence            999999999988888877732222111110000000000   00000000000000000000 0    000000000001


Q ss_pred             cccccCCCCCchHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHH
Q 000856          660 AETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGL  739 (1252)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  739 (1252)
                      .++.+.+..++..|++|++... ++....+.++..+....+.....+|++.|.+.-......  ......|..+|..+++
T Consensus       793 ~ee~~~G~v~~~vY~~Y~~a~~-g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~--~~~~~~~~~vY~~l~~  869 (1381)
T KOG0054|consen  793 EEERETGKVSWSVYKKYIKAAG-GFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT--TVSTSFYLGVYALLGV  869 (1381)
T ss_pred             HHHHhcCEeeHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc--CCCcchHHHHHHHHHH
Confidence            1112233334455555555422 222222223333333344444444444443221110000  0245678999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          740 YAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLL  819 (1252)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~  819 (1252)
                      ...++.+++.+.+...+.++++++|++++++++++||+|||.  ++.|+|+|||++|++.+|..++..+..++..++.++
T Consensus       870 ~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt--TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l  947 (1381)
T KOG0054|consen  870 ASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT--TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVL  947 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC--CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999986  789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHH
Q 000856          820 TSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHEL  899 (1252)
Q Consensus       820 ~~~i~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~  899 (1252)
                      +.++++.+..|+..++++.+..+++.+..++....++..|-....++|..+|+.|+++|+.|||||+.+++|.+++.+..
T Consensus       948 ~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~ 1027 (1381)
T KOG0054|consen  948 GILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELI 1027 (1381)
T ss_pred             HHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHh
Confidence            99999888888765555544444444444444444455555556789999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          900 RVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGES  979 (1252)
Q Consensus       900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  979 (1252)
                      |.+.+..+-....+.++..-..++..+....+..+.+..-... .+.|.....+.+.......++..+....+.++.+.|
T Consensus      1028 D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~-~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~S 1106 (1381)
T KOG0054|consen 1028 DENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGL-ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVS 1106 (1381)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence            9999987766666666555555554444333333333322222 667888888889999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCCCCCC--CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHH
Q 000856          980 VGSVFSTLDRSTRIDPDDPD--AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL 1057 (1252)
Q Consensus       980 ~~ri~~~~~~~~~~~~~~~~--~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~l 1057 (1252)
                      +||+.++.+.++|.+...+.  +++.||.+|+|+|+|++.+|..+ .++|||||||+|+||||||||||||||||||+++
T Consensus      1107 VERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~a 1185 (1381)
T KOG0054|consen 1107 VERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILA 1185 (1381)
T ss_pred             hhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHH
Confidence            99999999977662221111  35569999999999999999644 3479999999999999999999999999999999


Q ss_pred             HhccCCCCCceEEECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCc
Q 000856         1058 IERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA 1137 (1252)
Q Consensus      1058 L~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~g 1137 (1252)
                      |+|+.+|.+|+|.|||+||+++++++||+++++|||||+||+||+|+||||. .+++|+++|+||++|++.++|.++|+|
T Consensus      1186 LFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf-~e~sD~~IW~ALe~~~Lk~~v~~~p~~ 1264 (1381)
T KOG0054|consen 1186 LFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF-DEYSDDEIWEALERCQLKDVVSSLPGG 1264 (1381)
T ss_pred             HHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc-cccCHHHHHHHHHHhChHHHHhhCCcC
Confidence            9999999999999999999999999999999999999999999999999985 579999999999999999999999999


Q ss_pred             CCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEE
Q 000856         1138 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIG 1217 (1252)
Q Consensus      1138 ldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~ 1217 (1252)
                      ||++|.|+|.|||.||||++||||||||+++||+||||||++|++|+..||++|++.|++||||+||||++|+.+||||+
T Consensus      1265 Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVl 1344 (1381)
T KOG0054|consen 1265 LDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVL 1344 (1381)
T ss_pred             CCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCEEEEecChhhhhcCCCchhHHHHHHh
Q 000856         1218 VVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248 (1252)
Q Consensus      1218 vl~~G~Ive~G~~~eLl~~~~g~y~~l~~~q 1248 (1252)
                      |||+|+|+|+|+|++|++++++.|++++..-
T Consensus      1345 Vld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~ 1375 (1381)
T KOG0054|consen 1345 VLDAGRVVEFDSPAELLSDKDSLFSSLLKEA 1375 (1381)
T ss_pred             EeeCCeEeecCChHHHHhCCcchHHHHHHHH
Confidence            9999999999999999999899998666543

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=9.9e-155  Score=1548.15  Aligned_cols=1097  Identities=22%  Similarity=0.273  Sum_probs=833.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000856          109 MYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLA  188 (1252)
Q Consensus       109 ~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  188 (1252)
                      ..++.++...++..+++|+++++..++++. ++|+++|++++|++++++++. .+..++..++.+++++++++..-...+
T Consensus       366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~-~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~  443 (1622)
T PLN03130        366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKF-TSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVAS  443 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356778888888899999999999998754 799999999999999999874 455555555554444444333211122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          189 LLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAK  268 (1252)
Q Consensus       189 l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  268 (1252)
                      ++.++++.+++++..++.+++++..++.++..++..+.+.|.++|+++||+|+||+.+.+++.+.++++.+...+.....
T Consensus       444 l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~  523 (1622)
T PLN03130        444 LIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLS  523 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222333444455677788888888888899999999999999999999999999999999999988888777766665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 000856          269 GLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSI  348 (1252)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~  348 (1252)
                      ++...+......  .+.++++|++.+.+|.++++.+|+++.+......|+..++..+..+.+++++.+|+.++++.++..
T Consensus       524 ~~~~~~~~~~~~--~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~  601 (1622)
T PLN03130        524 AFNSFILNSIPV--LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERV  601 (1622)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence            554433322221  244567888888999999999998876666667788888888999999999999999999765332


Q ss_pred             CCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC-cEEEEC
Q 000856          349 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA-GHVLLD  427 (1252)
Q Consensus       349 ~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~-G~i~~~  427 (1252)
                      .. + .. ...+..+.|+++|++|+|+++++.++|+|+||+|++||+++||||||||||||+++|+|+++|++ |+|.+.
T Consensus       602 ~~-~-~~-~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~  678 (1622)
T PLN03130        602 LL-P-NP-PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR  678 (1622)
T ss_pred             cc-c-CC-cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc
Confidence            11 1 11 01111246999999999985444679999999999999999999999999999999999999999 999864


Q ss_pred             CccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChH
Q 000856          428 NVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG  507 (1252)
Q Consensus       428 g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgG  507 (1252)
                                   ++|+||+|+||+|++||||||+||.| .++++++++++.|++.++++.+|+|++|.+||+|.+||||
T Consensus       679 -------------~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGG  744 (1622)
T PLN03130        679 -------------GTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGG  744 (1622)
T ss_pred             -------------CeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHH
Confidence                         48999999999999999999999987 4788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHH-HHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecChH
Q 000856          508 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ-EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHE  586 (1252)
Q Consensus       508 qkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~-~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~  586 (1252)
                      |||||+||||+|++|+|+||||||||||+++++.+. ++++...+++|+|+|||+++.+..||+|++|++|+++++|+++
T Consensus       745 QKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~  824 (1622)
T PLN03130        745 QKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYE  824 (1622)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHH
Confidence            999999999999999999999999999999987765 5677666799999999999999999999999999999999999


Q ss_pred             HHHhcccchHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCcccccccccccccCC
Q 000856          587 ELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKN  666 (1252)
Q Consensus       587 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (1252)
                      |++++.+.|.++...+....+...........  ..............    ..+.. ......+.........++++.+
T Consensus       825 eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~e~~~~g  897 (1622)
T PLN03130        825 ELSNNGPLFQKLMENAGKMEEYVEENGEEEDD--QTSSKPVANGNANN----LKKDS-SSKKKSKEGKSVLIKQEERETG  897 (1622)
T ss_pred             HHHhcchhHHHHHHhccccccccccccccccc--cccccccccccccc----ccccc-cccccccccchhhhhHHHHhcC
Confidence            99998888888776543211110000000000  00000000000000    00000 0000000000000011112222


Q ss_pred             CCCchHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHH
Q 000856          667 PAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYL  746 (1252)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  746 (1252)
                      ...+..|++|++.....+ ...+.++..++..++.....++++.+.+...    . .......|..+|++++++..++.+
T Consensus       898 ~v~~~vy~~Y~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~----~-~~~~~~~~~~i~~~l~~~~~i~~~  971 (1622)
T PLN03130        898 VVSWKVLERYKNALGGAW-VVMILFLCYVLTEVFRVSSSTWLSEWTDQGT----P-KTHGPLFYNLIYALLSFGQVLVTL  971 (1622)
T ss_pred             ccCHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----c-CCCchhHHHHHHHHHHHHHHHHHH
Confidence            233444555544432221 2222222222223333333344443332111    0 111234567778888888888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          747 IQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAF  826 (1252)
Q Consensus       747 ~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~  826 (1252)
                      ++.++..+.+.++++++|.+++++++++|++||++  +++|+++||+++|++.++..++..+..++..++.+++.+++++
T Consensus       972 ~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~--~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~ 1049 (1622)
T PLN03130        972 LNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIG 1049 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999985  8899999999999999999999999999999998888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHH
Q 000856          827 IVEWRVSLLILGTYPLLVLANF---AQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQ  903 (1252)
Q Consensus       827 ~~~~~l~l~~l~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~  903 (1252)
                      +++|...+   +++|+.+++.+   +..+..++..+......++..+++.|+++|+++||+|++++++.+.+.+..+...
T Consensus      1050 ~~~~~~~~---~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~ 1126 (1622)
T PLN03130       1050 IVSTISLW---AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNI 1126 (1622)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            87764333   22333332222   2233334444444556788999999999999999999999988888877777766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          904 SQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGV-ST-----FSKVIKVFVVLVVTANSVAETVSLAPEIIRGG  977 (1252)
Q Consensus       904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  977 (1252)
                      +..+.......+......++   ...++++.+...+..+. .+     .+.+..++.+.......+..+.....+.+...
T Consensus      1127 ~~~~~~~~~~~wl~~~l~~~---~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~ 1203 (1622)
T PLN03130       1127 RFTLVNMSSNRWLAIRLETL---GGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSL 1203 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55443333333322222222   12222223333333321 11     22233333444555566667777778889999


Q ss_pred             HHHHHHHHHhcccCCCCCC--CCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHH
Q 000856          978 ESVGSVFSTLDRSTRIDPD--DPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVI 1055 (1252)
Q Consensus       978 ~s~~ri~~~~~~~~~~~~~--~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl 1055 (1252)
                      .+++|+.++++.+++.+..  ....++.||.+|.|+|+||+|+|+++ .++||+|+||+|+|||+||||||||||||||+
T Consensus      1204 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl 1282 (1622)
T PLN03130       1204 NAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSML 1282 (1622)
T ss_pred             HHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHH
Confidence            9999999999876554321  11122345677899999999999643 24699999999999999999999999999999


Q ss_pred             HHHhccCCCCCceEEECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCC
Q 000856         1056 ALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALP 1135 (1252)
Q Consensus      1056 ~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp 1135 (1252)
                      ++|+|+|+|++|+|+|||+||++++++++|++|++|||||+||+|||||||+|+. +++|+|+|+|+++++++++|.++|
T Consensus      1283 ~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp 1361 (1622)
T PLN03130       1283 NALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNS 1361 (1622)
T ss_pred             HHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCc
Confidence            9999999999999999999999999999999999999999999999999999976 689999999999999999999999


Q ss_pred             CcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCE
Q 000856         1136 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDC 1215 (1252)
Q Consensus      1136 ~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~Dr 1215 (1252)
                      +||||+|||+|.+|||||||||||||||+|+|+|||||||||+||.+||+.|+++|++.+++||+|+||||++|+.+|||
T Consensus      1362 ~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~Dr 1441 (1622)
T PLN03130       1362 LGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR 1441 (1622)
T ss_pred             cccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCEEEEecChhhhhcCCCchhHHHHHHhh
Q 000856         1216 IGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 1249 (1252)
Q Consensus      1216 I~vl~~G~Ive~G~~~eLl~~~~g~y~~l~~~q~ 1249 (1252)
                      |+|||+|+|+|+|+|+||+++++|.|++|++.+.
T Consensus      1442 IlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130       1442 ILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred             EEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence            9999999999999999999876799999998764

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=2.2e-153  Score=1538.68  Aligned_cols=1093  Identities=21%  Similarity=0.273  Sum_probs=830.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000856          109 MYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLA  188 (1252)
Q Consensus       109 ~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~  188 (1252)
                      ...+.++...++..+++|+++++..++++. ++|+++|++++|++.+++++ ..+..++..++.++++++++   .+.++
T Consensus       366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~-~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l---~~~lg  440 (1495)
T PLN03232        366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNF-ASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLL---YQQLG  440 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHh
Confidence            466778888888899999999999988754 79999999999999999986 34444444444333333322   22233


Q ss_pred             HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH
Q 000856          189 LLSIA---VIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAG  265 (1252)
Q Consensus       189 l~~l~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  265 (1252)
                      +.+++   ++.+++++..++.+++++..++.++..++..+.+.|.++|+++||+|+||+.+.+++++.++++.+...+..
T Consensus       441 ~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~  520 (1495)
T PLN03232        441 VASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQ  520 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32222   222333345667888888888899999999999999999999999999999999999999998888877776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000856          266 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQK  345 (1252)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~  345 (1252)
                      ...++...+.....  ..+.++++|++.+.+|.++++.+|+++.+......|+..++..+..+.+++++.+|+.++++.+
T Consensus       521 ~~~~~~~~~~~~~~--~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~  598 (1495)
T PLN03232        521 LLSAFNSFILNSIP--VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSE  598 (1495)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            66555433322222  2233467888999999999999999877777767788888888999999999999999999865


Q ss_pred             CCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE
Q 000856          346 PSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL  425 (1252)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~  425 (1252)
                      ++.....  . ......+.|+++|++|+|+++++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.
T Consensus       599 ~~~~~~~--~-~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~  675 (1495)
T PLN03232        599 ERILAQN--P-PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV  675 (1495)
T ss_pred             ccccccc--C-CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE
Confidence            4321111  1 111123469999999999854446799999999999999999999999999999999999999998763


Q ss_pred             ECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCC
Q 000856          426 LDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS  505 (1252)
Q Consensus       426 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LS  505 (1252)
                                  .+|++|+||+|+||+|++||||||+||.+ .++++++++++.|++.++++.+|+|++|.+||+|.+||
T Consensus       676 ------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LS  742 (1495)
T PLN03232        676 ------------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNIS  742 (1495)
T ss_pred             ------------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccC
Confidence                        24568999999999999999999999986 67889999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHH-HHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecC
Q 000856          506 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE-ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT  584 (1252)
Q Consensus       506 gGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~-~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~  584 (1252)
                      |||||||+||||+|++|+|+||||||||||+++++++.+ ++....+++|+|+||||++.+..||+|++|++|+++++|+
T Consensus       743 GGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt  822 (1495)
T PLN03232        743 GGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGT  822 (1495)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecC
Confidence            999999999999999999999999999999999887755 5666667999999999999999999999999999999999


Q ss_pred             hHHHHhcccchHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCccccccccccccc
Q 000856          585 HEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDR  664 (1252)
Q Consensus       585 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (1252)
                      |+|++++++.|.++.+.+....+.....+..+..  .    ..........  ...+.. ......... ....+.++.+
T Consensus       823 ~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~--~~~~~~-~~~~~~~~~-~~~~~~e~~~  892 (1495)
T PLN03232        823 FAELSKSGSLFKKLMENAGKMDATQEVNTNDENI--L----KLGPTVTIDV--SERNLG-STKQGKRGR-SVLVKQEERE  892 (1495)
T ss_pred             HHHHHhcchhHHHHHHhccccccccccccccccc--c----cccccccccc--cccccc-cccccccch-hhhhhHHHHh
Confidence            9999998888888876543211111000000000  0    0000000000  000000 000000000 0001111122


Q ss_pred             CCCCCchHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHH
Q 000856          665 KNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVA  744 (1252)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  744 (1252)
                      .....+..|+++++..+..+ ...+.++..++..++.....++++.|.    ..... .......|..+|++++++..++
T Consensus       893 ~g~v~~~vy~~y~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~wl~~w~----~~~~~-~~~~~~~~l~~y~~l~~~~~~~  966 (1495)
T PLN03232        893 TGIISWNVLMRYNKAVGGLW-VVMILLVCYLTTEVLRVSSSTWLSIWT----DQSTP-KSYSPGFYIVVYALLGFGQVAV  966 (1495)
T ss_pred             cCcccHHHHHHHHHHcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh----cccCC-CCCCcchHHHHHHHHHHHHHHH
Confidence            22333444555554433212 222222222222222222222222221    11110 0112356788899999998899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          745 YLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIV  824 (1252)
Q Consensus       745 ~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~  824 (1252)
                      .+++.++..+.+.++++++|++++++++++|++||++  +++|+++||+++|++.++..++..+..++..++.+++.+++
T Consensus       967 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~--~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~ 1044 (1495)
T PLN03232        967 TFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT--NPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFAL 1044 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc--CCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999984  88999999999999999999999999998888888887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHh
Q 000856          825 AFIVEWRVSLLILGTYPLLVLANF---AQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRV  901 (1252)
Q Consensus       825 ~~~~~~~l~l~~l~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~  901 (1252)
                      ++++++...++   ++|+.+++.+   +..+..++..+......++..+++.|+++|+++||+|+.++++.+++.+..+.
T Consensus      1045 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~ 1121 (1495)
T PLN03232       1045 IGTVSTISLWA---IMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDN 1121 (1495)
T ss_pred             HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHH
Confidence            77766533322   2333333222   22233344455556677899999999999999999999999988888777776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC----CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          902 PQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVG-KGVS----TFS-KVIKVFVVLVVTANSVAETVSLAPEIIR  975 (1252)
Q Consensus       902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~g~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  975 (1252)
                      ..+..+.......+.......   +...++.+.+...+. .+.+    .++ .+..++.+......++..+...+.+++.
T Consensus      1122 ~~~~~~~~~~~~~wl~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~ 1198 (1495)
T PLN03232       1122 NIRFTLANTSSNRWLTIRLET---LGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAEN 1198 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665554333333222211111   122222233333333 2322    112 2223444555566778888888999999


Q ss_pred             HHHHHHHHHHHhcccCCCCCC-C-CCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHH
Q 000856          976 GGESVGSVFSTLDRSTRIDPD-D-PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSS 1053 (1252)
Q Consensus       976 ~~~s~~ri~~~~~~~~~~~~~-~-~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKST 1053 (1252)
                      ...+++|+.++++.+++.+.. + ...++.||.+|.|+|+||+|+|+++ .++||+|+||+|+|||++||||||||||||
T Consensus      1199 ~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKST 1277 (1495)
T PLN03232       1199 SLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSS 1277 (1495)
T ss_pred             HHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHH
Confidence            999999999999876553321 1 1112235667899999999999533 246999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhh
Q 000856         1054 VIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSA 1133 (1252)
Q Consensus      1054 Ll~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~ 1133 (1252)
                      |+++|+|+|+|++|+|+|||+|+++++++++|++|++|||||++|+|||||||+|+. +++|+|+|+|++.+++++++++
T Consensus      1278 L~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~ 1356 (1495)
T PLN03232       1278 MLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDR 1356 (1495)
T ss_pred             HHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999975 6899999999999999999999


Q ss_pred             CCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhcc
Q 000856         1134 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGV 1213 (1252)
Q Consensus      1134 lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~ 1213 (1252)
                      +|+||||++||+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++.+++||+|+||||++++.+|
T Consensus      1357 lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~ 1436 (1495)
T PLN03232       1357 NPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDC 1436 (1495)
T ss_pred             CcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEeCCEEEEecChhhhhcCCCchhHHHHHHhhh
Q 000856         1214 DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHH 1250 (1252)
Q Consensus      1214 DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~l~~~q~~ 1250 (1252)
                      |||+|||+|+|+|+|+|+||+++++|.|++|++.+..
T Consensus      1437 DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232       1437 DKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred             CEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence            9999999999999999999999866799999987643

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=4.7e-150  Score=1508.41  Aligned_cols=1160  Identities=20%  Similarity=0.233  Sum_probs=876.7

Q ss_pred             HHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           49 VIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVL  128 (1252)
Q Consensus        49 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~i~  128 (1252)
                      .+..++.|+   ++..+++.+..+. +. .. .. ..++..++++.++..++.....+.....+.++...++..+|+|++
T Consensus       330 ~~~~~~~P~---ll~~li~~~~~~~-~~-~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L  402 (1522)
T TIGR00957       330 DLMMFIGPQ---ILSLLIRFVNDPM-AP-DW-QG-YFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKAL  402 (1522)
T ss_pred             HHHHHHHHH---HHHHHHHHhcCCC-cc-cc-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555   5788887654321 11 10 11 112222223333333333222333456788999999999999999


Q ss_pred             cCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          129 KQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYT  208 (1252)
Q Consensus       129 ~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~  208 (1252)
                      +++...++.. ++|+++|++++|++++.++. ..+..++..++.+++++++++......+++.++++++++++..++.++
T Consensus       403 ~l~~~~~~~~-~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~  480 (1522)
T TIGR00957       403 VITNSARKSS-TVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMK  480 (1522)
T ss_pred             hCChhhcCCC-CHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988754 78999999999999998855 334444444444343333332222223344455556666777788889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          209 LTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFW  288 (1252)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1252)
                      +++..++.++..++..+.+.|.++||++||+|+||+.+.+++++.++++.+...+..+...+..........  .+.++.
T Consensus       481 ~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  558 (1522)
T TIGR00957       481 TKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPF--LVALIT  558 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence            999999999999999999999999999999999999999999999988888776666655443322221111  122334


Q ss_pred             HHHHHHH--cCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcCC-CCcccE
Q 000856          289 YAGVFIR--NGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLD-EVNGNI  365 (1252)
Q Consensus       289 ~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~-~~~~~i  365 (1252)
                      ++.+.+.  ++.++++.+|+++.+......|+..++..+..+.++.++.+|+.++++.+++.+ ......... ...+.|
T Consensus       559 f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~-~~~~~~~~~~~~~~~i  637 (1522)
T TIGR00957       559 FAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEP-DSIERRTIKPGEGNSI  637 (1522)
T ss_pred             HHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccc-ccccccccCCCCCCcE
Confidence            5556655  357889999987755555567888899999999999999999999998654321 110001111 112369


Q ss_pred             EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhceE
Q 000856          366 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL  445 (1252)
Q Consensus       366 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~  445 (1252)
                      +++|++|+|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|             +|+|
T Consensus       638 ~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i~y  703 (1522)
T TIGR00957       638 TVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAY  703 (1522)
T ss_pred             EEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EEEE
Confidence            999999999743 34689999999999999999999999999999999999999999999997             5999


Q ss_pred             EccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEE
Q 000856          446 VNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKIL  525 (1252)
Q Consensus       446 v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~il  525 (1252)
                      |+|+||+|++||+|||.+|.+ .+.+++.++++.|++.++++.+|+|++|.+|++|.+|||||||||+||||++++|+|+
T Consensus       704 v~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~il  782 (1522)
T TIGR00957       704 VPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIY  782 (1522)
T ss_pred             EcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            999999999999999999875 4567788888999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCChHhHHHHHHHHHH---hcCCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhcccchHHHHHHH
Q 000856          526 LLDEATSALDAGSESIVQEALDR---LMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ  602 (1252)
Q Consensus       526 llDEpts~LD~~~~~~~~~~l~~---~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~  602 (1252)
                      |||||||+||+++++.+.+.+.+   +.+++|+|+|||+++.+..||+|++|++|+++++|+++++.++++.|.++...+
T Consensus       783 lLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~  862 (1522)
T TIGR00957       783 LFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTY  862 (1522)
T ss_pred             EEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhh
Confidence            99999999999999999998854   456899999999999999999999999999999999999998888888877544


Q ss_pred             HhhcccCCCCCC---c-ccccccc--ccc--ccc---cccccc---cccccccC---Cc-cc-cCCCCc-c-c-cccccc
Q 000856          603 EMVRNRDFANPS---T-RRSRSTR--LSH--SLS---TKSLSL---RSGSLRNL---SY-SY-STGADG-R-I-EMVSNA  660 (1252)
Q Consensus       603 ~~~~~~~~~~~~---~-~~~~~~~--~~~--~~~---~~~~~~---~~~~~~~~---~~-~~-~~~~~~-~-~-~~~~~~  660 (1252)
                      .........+..   . .....+.  .+.  ...   ......   ........   .. +. ...... . . ......
T Consensus       863 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  942 (1522)
T TIGR00957       863 APDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEA  942 (1522)
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHH
Confidence            221111000000   0 0000000  000  000   000000   00000000   00 00 000000 0 0 000001


Q ss_pred             ccccCCCCCchHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHH
Q 000856          661 ETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLY  740 (1252)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  740 (1252)
                      ++.+.+...+..|+.|++..+  +...++.++..++..++.....++++.+.+....   .........|..+|++++++
T Consensus       943 e~~~~g~v~~~~y~~Y~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~---~~~~~~~~~~~~iy~~l~i~ 1017 (1522)
T TIGR00957       943 DKAQTGQVELSVYWDYMKAIG--LFITFLSIFLFVCNHVSALASNYWLSLWTDDPMV---NGTQNNTSLRLSVYGALGIL 1017 (1522)
T ss_pred             HHHhcCcccHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cCCCCCcchHHHHHHHHHHH
Confidence            111112223444555554432  2222222222223333333444444444331110   00011123466688888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          741 AVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLT  820 (1252)
Q Consensus       741 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~  820 (1252)
                      ..++.++..++..+.+.++++++|++++++++++|++||+.  +++|+++||+++|++.++..++..+..++..++.+++
T Consensus      1018 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~ 1095 (1522)
T TIGR00957      1018 QGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER--TPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIG 1095 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888899999999999999999999999999985  8899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHH
Q 000856          821 SFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELR  900 (1252)
Q Consensus       821 ~~i~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~  900 (1252)
                      .++++++.+|++++++++++++++++..++.+..+...+......++..+++.|+++|+++||+|++++++.+++.+..+
T Consensus      1096 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~ 1175 (1522)
T TIGR00957      1096 ALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVD 1175 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHH
Confidence            98888888887666655555554444444444555555556667789999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          901 VPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVG-KGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGES  979 (1252)
Q Consensus       901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  979 (1252)
                      ...+..+.......++.....++..   .++++++...+. .+.++.|.+.+++.+......++..+...+.+++....+
T Consensus      1176 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s 1252 (1522)
T TIGR00957      1176 ENQKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVA 1252 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888877666665555544443322   233444444443 578999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCCCC--CCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHH
Q 000856          980 VGSVFSTLDRSTRIDP--DDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL 1057 (1252)
Q Consensus       980 ~~ri~~~~~~~~~~~~--~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~l 1057 (1252)
                      ++|+.++++.+++.+.  +....++.||.+|.|+|+||+|+|+++. ++||+|+||+|+|||++|||||||||||||+++
T Consensus      1253 ~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~l 1331 (1522)
T TIGR00957      1253 VERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLG 1331 (1522)
T ss_pred             HHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHH
Confidence            9999999976654321  1111223456778999999999997542 369999999999999999999999999999999


Q ss_pred             HhccCCCCCceEEECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCc
Q 000856         1058 IERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNA 1137 (1252)
Q Consensus      1058 L~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~g 1137 (1252)
                      |+|+|+|++|+|+|||+||++++++++|++|++|||||++|+||||+||++.. +++|||+|+|++.++++++|.++|+|
T Consensus      1332 L~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~G 1410 (1522)
T TIGR00957      1332 LFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDK 1410 (1522)
T ss_pred             HhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccC
Confidence            99999999999999999999999999999999999999999999999999754 69999999999999999999999999


Q ss_pred             CCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEE
Q 000856         1138 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIG 1217 (1252)
Q Consensus      1138 ldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~ 1217 (1252)
                      |||+|||+|.+||||||||+||||||+++|+|||||||||+||.+||+.|+++|++.+++||||+||||++++.+||||+
T Consensus      1411 Ldt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIl 1490 (1522)
T TIGR00957      1411 LDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVI 1490 (1522)
T ss_pred             CCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCEEEEecChhhhhcCCCchhHHHHHHh
Q 000856         1218 VVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248 (1252)
Q Consensus      1218 vl~~G~Ive~G~~~eLl~~~~g~y~~l~~~q 1248 (1252)
                      |||+|+|+|+|+|+||+++ +|.|++|++..
T Consensus      1491 Vld~G~IvE~G~~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957      1491 VLDKGEVAEFGAPSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred             EEECCEEEEECCHHHHHhC-CCHHHHHHHHc
Confidence            9999999999999999997 79999999863

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=5.8e-144  Score=1443.43  Aligned_cols=1126  Identities=18%  Similarity=0.220  Sum_probs=853.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhc-cCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000856           94 GLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDT-DARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLST  172 (1252)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~-~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~  172 (1252)
                      .++..++.....+.....+.++...++..+|+|+++++...+.+ +.++|+++|++++|++++.+++. .+..++...+.
T Consensus       295 ~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~  373 (1560)
T PTZ00243        295 QLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQ-YCMYLWSSPMV  373 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHH
Confidence            33444444444455566677788888888999999988876642 23689999999999999999974 45566666666


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHH
Q 000856          173 FLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSD  252 (1252)
Q Consensus       173 ~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~  252 (1252)
                      +++++++++.+..+.+++.++++++++++..++.+++.+..++..+..++..+.+.|.++|||+||.++||+.+.+++++
T Consensus       374 li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~  453 (1560)
T PTZ00243        374 LLLSILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIED  453 (1560)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666665555777777777788888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          253 AIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGK  332 (1252)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  332 (1252)
                      .++++.+...+......+...+.+....++  .++.++++.+.++.++++.+|+++.+......|+..++..+..+.++.
T Consensus       454 ~R~~El~~l~~~~~~~~~~~~~~~~~p~l~--~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~  531 (1560)
T PTZ00243        454 KRARELRYLRDVQLARVATSFVNNATPTLM--IAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFL  531 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999887777777666555444443333  233566788889999999999998777777778988999999999999


Q ss_pred             HHHHHHHHHHccCCCCCC---C--C-------C-C--C-----C------------------------------------
Q 000856          333 AAGYKLMEIIKQKPSIIQ---D--P-------T-N--G-----R------------------------------------  356 (1252)
Q Consensus       333 ~s~~ri~~~l~~~~~~~~---~--~-------~-~--~-----~------------------------------------  356 (1252)
                      +|++||.++++.++....   +  .       . .  .     .                                    
T Consensus       532 vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (1560)
T PTZ00243        532 VSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCR  611 (1560)
T ss_pred             HHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccc
Confidence            999999999976431000   0  0       0 0  0     0                                    


Q ss_pred             -cCCCCcccEEEEeEEEECCCC-------------------------------------CCCccccceeEEeeCCCEEEE
Q 000856          357 -CLDEVNGNIEFKNVTFSYPSR-------------------------------------PDVIIFRDFSIFFPAGKTVAV  398 (1252)
Q Consensus       357 -~~~~~~~~i~~~~v~~~y~~~-------------------------------------~~~~~l~~i~l~i~~g~~~~i  398 (1252)
                       ......+.+.++|++++++..                                     .+.++|+|+||+|++|++++|
T Consensus       612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~I  691 (1560)
T PTZ00243        612 PTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVV  691 (1560)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEE
Confidence             000011246777777765310                                     123589999999999999999


Q ss_pred             EcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHH
Q 000856          399 VGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAAS  478 (1252)
Q Consensus       399 vG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~  478 (1252)
                      +||||||||||+++|+|+++|++|+|.++             ++|+||+|+||++++||+|||.++.+ .+.+++.++++
T Consensus       692 iG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~  757 (1560)
T PTZ00243        692 LGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVR  757 (1560)
T ss_pred             ECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHH
Confidence            99999999999999999999999999874             37999999999999999999999865 34556778888


Q ss_pred             HhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHH-HHHhcCCCeEEE
Q 000856          479 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEA-LDRLMVGRTTVV  557 (1252)
Q Consensus       479 ~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~-l~~~~~~~tvi~  557 (1252)
                      .|++.++++.+|+|++|.+|++|.+|||||||||+||||++.+|+++|||||||+||+++++.+.+. +....+|+|+|+
T Consensus       758 ~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIl  837 (1560)
T PTZ00243        758 VSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVL  837 (1560)
T ss_pred             HhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEE
Confidence            8999999999999999999999999999999999999999999999999999999999988777654 444456899999


Q ss_pred             EccCccchhccCEEEEEeCCEEEEecChHHHHhcccchHHHHHHHHhhcccCCCCCCccccccccccccccccccccccc
Q 000856          558 VAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSG  637 (1252)
Q Consensus       558 itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  637 (1252)
                      +||+++.+..||+|++|++|+++++|+++++.+. +.|..+........+........+........ ............
T Consensus       838 vTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  915 (1560)
T PTZ00243        838 ATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT-SLYATLAAELKENKDSKEGDADAEVAEVDAAP-GGAVDHEPPVAK  915 (1560)
T ss_pred             EeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC-hHHHHHHHhhcccccccccccccccccccccc-cccccccccccc
Confidence            9999999999999999999999999999999875 34655544321111100000000000000000 000000000000


Q ss_pred             ccccCCccccCCCCcccccccccccccCCCCCchHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000856          638 SLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYY  717 (1252)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  717 (1252)
                      .............+.........+++.....++..|++|++..+.. .+.+..++..++..++.....++++.+..    
T Consensus       916 ~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~-~~~~~~l~~~~~~~~~~~~~~~wl~~w~~----  990 (1560)
T PTZ00243        916 QEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRFCGGL-HAAGFVLATFAVTELVTVSSGVWLSMWST----  990 (1560)
T ss_pred             cccccccccccccccccchhhhHHHHhcCcccHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence            0000000000000000000001111122233444555555543321 11111111112222222222233332221    


Q ss_pred             cCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcH
Q 000856          718 RNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDA  797 (1252)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~  797 (1252)
                       +.  .......|+.+|+++.++.++..+++.+.....+.+..+++|++++++++++|++|||+  ++.|+++||+++|+
T Consensus       991 -~~--~~~~~~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~--~~~G~ilnR~s~Di 1065 (1560)
T PTZ00243        991 -RS--FKLSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT--TPLGRILNRFSRDI 1065 (1560)
T ss_pred             -cc--cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC--CCccHHHHHHHhhH
Confidence             11  11112346667777766666666667677777778888999999999999999999985  78999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 000856          798 ADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVS  877 (1252)
Q Consensus       798 ~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~  877 (1252)
                      +.++..++..+..++..++.+++.++++++.+|.+.++++.++.+++.+...+.+..++..+......++..+++.|+++
T Consensus      1066 ~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~ 1145 (1560)
T PTZ00243       1066 DILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQ 1145 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHc
Confidence            99999999999999999999999888888888754433322222222222333444445555556677899999999999


Q ss_pred             cHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHH
Q 000856          878 NIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLV--GKGVSTFSKVIKVFVV  955 (1252)
Q Consensus       878 gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv--~~g~~~~~~~~~~~~~  955 (1252)
                      |+++||+|+.++.+.+++.+..+...+..+.......+......++..+...++.++++...  ..+.++.|.+..++.+
T Consensus      1146 G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~ 1225 (1560)
T PTZ00243       1146 GSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTM 1225 (1560)
T ss_pred             CHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            99999999999999999999999998888777666666666666665555555555554433  3445788888788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-CC------------------------CCC-C---CCCCCc
Q 000856          956 LVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRID-PD------------------------DPD-A---EPVETI 1006 (1252)
Q Consensus       956 ~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~-~~------------------------~~~-~---~~~~~~ 1006 (1252)
                      ......++..++..+.+++..+.+++|+.++++..++++ +.                        ++. .   .+.++.
T Consensus      1226 a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1305 (1560)
T PTZ00243       1226 AMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQ 1305 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCC
Confidence            888889999999999999999999999999986433211 00                        000 0   012234


Q ss_pred             cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhc
Q 000856         1007 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086 (1252)
Q Consensus      1007 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~ 1086 (1252)
                      .|.|+|+||+|+|++. .++||+||||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||++++++++|+
T Consensus      1306 ~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243       1306 AGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred             CCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHh
Confidence            6889999999999643 346999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 000856         1087 KIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 1166 (1252)
Q Consensus      1087 ~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 1166 (1252)
                      +|++|||||+||+||||+||+++ .+++|+|+|+|++.+++++++.++|+||||++||+|.+|||||||||||||||+++
T Consensus      1385 ~I~iVpQdp~LF~gTIreNIdp~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243       1385 QFSMIPQDPVLFDGTVRQNVDPF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred             cceEECCCCccccccHHHHhCcc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999986 47899999999999999999999999999999999999999999999999999996


Q ss_pred             -CCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcCCCchhHHHH
Q 000856         1167 -PAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 1245 (1252)
Q Consensus      1167 -p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~l~ 1245 (1252)
                       |+|||||||||+||++||+.|++.|++.+++||||+||||++++.+||+|+||++|+|+|+|+|+||+++++|.|++|+
T Consensus      1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~ 1543 (1560)
T PTZ00243       1464 GSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543 (1560)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHH
Confidence             8999999999999999999999999999999999999999999999999999999999999999999987789999999


Q ss_pred             HHhhh
Q 000856         1246 QLQHH 1250 (1252)
Q Consensus      1246 ~~q~~ 1250 (1252)
                      +.+..
T Consensus      1544 ~~~~~ 1548 (1560)
T PTZ00243       1544 EALGR 1548 (1560)
T ss_pred             HHhCh
Confidence            87643

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=6.2e-142  Score=1424.84  Aligned_cols=1161  Identities=18%  Similarity=0.232  Sum_probs=850.5

Q ss_pred             HHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           49 VIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVL  128 (1252)
Q Consensus        49 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~i~  128 (1252)
                      .+..++.|+   ++..+++.+..+.. ..  ......+++.++++.++..++.....+.....+.++...+...+|+|++
T Consensus        93 ~~~~~~~P~---ll~~li~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L  166 (1490)
T TIGR01271        93 EATKAVQPL---LLGRIIASYDPFNA-PE--REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTL  166 (1490)
T ss_pred             HHHHHHHHH---HHHHHHHHhccCCC-Cc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455555   57888877532211 10  0111123333333344444444444555556677777777777899999


Q ss_pred             cCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          129 KQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYT  208 (1252)
Q Consensus       129 ~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~  208 (1252)
                      +++...+++ .++|+++|++++|++++.+++... ..++...+.+++++++++......+++.++++++++++..+++++
T Consensus       167 ~l~~~~~~~-~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~  244 (1490)
T TIGR01271       167 KLSSRVLDK-ISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQK  244 (1490)
T ss_pred             hCCHHHhcC-CCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998875 478999999999999999976543 334444444455555555555556777778888888888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          209 LTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFW  288 (1252)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (1252)
                      +.+..++.++..++..+.+.|.++|||+||+|+||+.+.+++++.++++.+...+......+...+..+..  ..+.++.
T Consensus       245 ~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  322 (1490)
T TIGR01271       245 MMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSG--FFVVFLS  322 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            99999999999999999999999999999999999999999999999988887777666544333332222  2334556


Q ss_pred             HHHHHHHcCccCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcCCCCcccEEE
Q 000856          289 YAGVFIRNGVTDGGKAFTAIFSAIVGGMSL-GQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEF  367 (1252)
Q Consensus       289 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  367 (1252)
                      ++++.+.++ ++++.+|+++.+......++ ..++..+..+.++.++.+||.+++..++.. ....     ......+++
T Consensus       323 f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~-~~~~-----~~~~~~i~~  395 (1490)
T TIGR01271       323 VVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYK-TLEY-----NLTTTEVEM  395 (1490)
T ss_pred             HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-cccc-----cCCCCceEE
Confidence            667766654 57888888765544444455 357777888999999999999999865321 1110     011235899


Q ss_pred             EeEEEECCCCC-------------------------------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 000856          368 KNVTFSYPSRP-------------------------------DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       368 ~~v~~~y~~~~-------------------------------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~  416 (1252)
                      +|++|.|+...                               ..++|+|+||+|++||+++|+||||||||||+++|+|+
T Consensus       396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~  475 (1490)
T TIGR01271       396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE  475 (1490)
T ss_pred             ecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            99999995310                               13589999999999999999999999999999999999


Q ss_pred             cCCCCcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCcccc
Q 000856          417 YDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQ  496 (1252)
Q Consensus       417 ~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  496 (1252)
                      ++|++|+|.++|             +|+||+|+||+|++||+|||.||.+ .+.+++.++++.|++.++++.+|.|++|.
T Consensus       476 ~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~  541 (1490)
T TIGR01271       476 LEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTV  541 (1490)
T ss_pred             CCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhcccccccc
Confidence            999999999998             5999999999999999999999865 44566777888889999999999999999


Q ss_pred             ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHH-HHHHhcCCCeEEEEccCccchhccCEEEEEe
Q 000856          497 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQE-ALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQ  575 (1252)
Q Consensus       497 ~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~-~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~  575 (1252)
                      +|++|.+|||||||||+||||++++|+++|||||||+||+++++.+.+ ++.++.+++|+|+|||+++.+..||+|++|+
T Consensus       542 vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~  621 (1490)
T TIGR01271       542 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLH  621 (1490)
T ss_pred             ccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEE
Confidence            999999999999999999999999999999999999999999999987 4677777999999999999998899999999


Q ss_pred             CCEEEEecChHHHHhcccchHHHHHHHHhhc----cc--------------C--------C-C------CCCccccccc-
Q 000856          576 QGQVVETGTHEELIAKAGAYASLIRFQEMVR----NR--------------D--------F-A------NPSTRRSRST-  621 (1252)
Q Consensus       576 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~----~~--------------~--------~-~------~~~~~~~~~~-  621 (1252)
                      +|++++.|+++++.+.++.|...........    +.              .        . .      .+..+..... 
T Consensus       622 ~g~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (1490)
T TIGR01271       622 EGVCYFYGTFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRK  701 (1490)
T ss_pred             CCEEEEEcCHHHHHhcChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999887666655543110000    00              0        0 0      0000000000 


Q ss_pred             -------cc------------------c-c-ccccccc--------------ccccccc-----c----cCC------cc
Q 000856          622 -------RL------------------S-H-SLSTKSL--------------SLRSGSL-----R----NLS------YS  645 (1252)
Q Consensus       622 -------~~------------------~-~-~~~~~~~--------------~~~~~~~-----~----~~~------~~  645 (1252)
                             ..                  . . .......              .......     +    +..      ..
T Consensus       702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  781 (1490)
T TIGR01271       702 QSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTH  781 (1490)
T ss_pred             ccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccc
Confidence                   00                  0 0 0000000              0000000     0    000      00


Q ss_pred             ccCC-----------------------------------CCcccc-c-----------ccccccccCCCCCchHHHHHHH
Q 000856          646 YSTG-----------------------------------ADGRIE-M-----------VSNAETDRKNPAPDGYFLRLLK  678 (1252)
Q Consensus       646 ~~~~-----------------------------------~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~  678 (1252)
                      ....                                   .+...+ .           ..+.++...+...+..|++|++
T Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~  861 (1490)
T TIGR01271       782 SNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYIT  861 (1490)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHH
Confidence            0000                                   000000 0           0000001111223344555554


Q ss_pred             hhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc-cCCchh-----------hhhhHHH-HHHHHHHHHHHHH
Q 000856          679 LNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVF--YY-RNPASM-----------ERKTKEF-VFIYIGAGLYAVV  743 (1252)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~  743 (1252)
                      ..+ .+.++++.+++.++..++.....+|+..+....  +. ......           .....+| +.+|+++++...+
T Consensus       862 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  940 (1490)
T TIGR01271       862 TNR-NLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLA  940 (1490)
T ss_pred             hcC-cHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHH
Confidence            432 222222222222233333333333333222100  00 000000           0011222 3445555555566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          744 AYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFI  823 (1252)
Q Consensus       744 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i  823 (1252)
                      +.+++.++..+.+.+++.++|.+++++++++|++||++  +++|+++||+++|++.++..++..+..++..++.+++.++
T Consensus       941 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~ 1018 (1490)
T TIGR01271       941 LGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT--MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIF 1018 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77778888899999999999999999999999999985  7899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHH
Q 000856          824 VAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQ  903 (1252)
Q Consensus       824 ~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~  903 (1252)
                      ++++++|+++++++.++.+++++..++.+..++..+......++..+++.|+++|+.+||+|++++++.+++.+..+...
T Consensus      1019 ~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~ 1098 (1490)
T TIGR01271      1019 VVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHT 1098 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            88888887655433333333333333334444555555667789999999999999999999999999999999998776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          904 SQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSV  983 (1252)
Q Consensus       904 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri  983 (1252)
                      +..+.......++.....++..+...++..+   .+....++.|.+..++.+......++..++..+.++...+.+++|+
T Consensus      1099 ~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l---~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi 1175 (1490)
T TIGR01271      1099 ANWFLYLSTLRWFQMRIDIIFVFFFIAVTFI---AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRV 1175 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655544444444333333222211111111   1111233444555555566666777888888888999999999999


Q ss_pred             HHHhcccCCCCCC-C---------------CCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCC
Q 000856          984 FSTLDRSTRIDPD-D---------------PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGAS 1047 (1252)
Q Consensus       984 ~~~~~~~~~~~~~-~---------------~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~S 1047 (1252)
                      .++++.+++.... +               +..++.||..|.|+|+||+|+|++. .+++|+|+||+|+|||+|||||||
T Consensus      1176 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrS 1254 (1490)
T TIGR01271      1176 FKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRT 1254 (1490)
T ss_pred             HHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCC
Confidence            9999765543211 0               0112236777899999999999743 357999999999999999999999


Q ss_pred             CCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCc
Q 000856         1048 GSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANV 1127 (1252)
Q Consensus      1048 GSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l 1127 (1252)
                      |||||||+++|+|+++ ++|+|+|||+||++++++++|++|++|||||++|+||||+||+++. .++|+++|+|++.+++
T Consensus      1255 GsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~aL~~~~L 1332 (1490)
T TIGR01271      1255 GSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKVAEEVGL 1332 (1490)
T ss_pred             CCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHHHHHCCC
Confidence            9999999999999997 7999999999999999999999999999999999999999999864 6899999999999999


Q ss_pred             hhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 000856         1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 1207 (1252)
Q Consensus      1128 ~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl 1207 (1252)
                      ++++.++|+||||+|+|+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++.+++||||+||||+
T Consensus      1333 ~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl 1412 (1490)
T TIGR01271      1333 KSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRV 1412 (1490)
T ss_pred             HHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCEEEEEeCCEEEEecChhhhhcCCCchhHHHHHHhhh
Q 000856         1208 STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHH 1250 (1252)
Q Consensus      1208 ~ti~~~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~l~~~q~~ 1250 (1252)
                      +++.+||||+||++|+|+|+|+|++|+++ +|.|++|++.+.+
T Consensus      1413 ~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271      1413 EALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADR 1454 (1490)
T ss_pred             HHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhCh
Confidence            99999999999999999999999999985 8999999987644

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.8e-105  Score=929.83  Aligned_cols=574  Identities=38%  Similarity=0.611  Sum_probs=543.7

Q ss_pred             hHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          671 GYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHY  750 (1252)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  750 (1252)
                      ..+++++.+.++.|+++..+.++.++........|.+.+.+++.+......  .........++.++.+..+++.+++.+
T Consensus       133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~--~~~~~~~~~~l~~l~~~~a~~~~~r~~  210 (716)
T KOG0058|consen  133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDS--ADALKRACTILLGLFLIGALANAIRGG  210 (716)
T ss_pred             hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367899999999999999999999999888999999999999888761111  222334566677777888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          751 FFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEW  830 (1252)
Q Consensus       751 ~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  830 (1252)
                      ++.+.+.++..++|.++|+++++++++|||.  +.+|++++|++.|...+.+.++.++...+.+++..++++++|++.+|
T Consensus       211 ~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~--nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~  288 (716)
T KOG0058|consen  211 LLQYAGERVVARLRTDLFRSLLRQDIAFFDE--NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSW  288 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence            9999999999999999999999999999996  67999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHH
Q 000856          831 RVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRS  910 (1252)
Q Consensus       831 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~  910 (1252)
                      .++++.++.+|++.++..++.++.++.+++.+..-+..+....|.+++++|||+|+.|+...++|.+..++..+...|..
T Consensus       289 ~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a  368 (716)
T KOG0058|consen  289 RLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEA  368 (716)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000856          911 LTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRS  990 (1252)
Q Consensus       911 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~  990 (1252)
                      ...++++....+...+....++++|.+++..|.++.|++..+++|......++..+.+.+.+++++..+.+|+++++|.+
T Consensus       369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~  448 (716)
T KOG0058|consen  369 VAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRK  448 (716)
T ss_pred             HHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEE
Q 000856          991 TRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 1070 (1252)
Q Consensus       991 ~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~ 1070 (1252)
                      |..++. ....|. ..+|.|+|+||+|+||.+|+.+||+|+||+|+|||+||+||||||||||++++|.|||+|++|+|+
T Consensus       449 P~i~~~-G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il  526 (716)
T KOG0058|consen  449 PRIPLT-GTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL  526 (716)
T ss_pred             CCCCCC-Cccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence            887655 322332 578999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 000856         1071 IDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 1150 (1252)
Q Consensus      1071 idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LS 1150 (1252)
                      +||+||++++++.||++||+|.|||.||++||+|||.||.+++++||+.+|+++++.||||..+|+||||.|||+|..||
T Consensus       527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS  606 (716)
T KOG0058|consen  527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS  606 (716)
T ss_pred             ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 000856         1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 1230 (1252)
Q Consensus      1151 gGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~ 1230 (1252)
                      |||||||||||||+|||+||||||||||||.++|..++++|.+..+++|||+||||++|++.+|+|+|+++|+|+|.|+|
T Consensus       607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h  686 (716)
T KOG0058|consen  607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTH  686 (716)
T ss_pred             chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCchhHHHHHHhhh
Q 000856         1231 SELVSRPDGAYSRLLQLQHH 1250 (1252)
Q Consensus      1231 ~eLl~~~~g~y~~l~~~q~~ 1250 (1252)
                      +|||++++|.|++|++.|.-
T Consensus       687 ~eLl~~~~gly~~Lv~~q~~  706 (716)
T KOG0058|consen  687 DELLSKPNGLYAKLVQRQLD  706 (716)
T ss_pred             HHHhhCcccHHHHHHHHhcc
Confidence            99999988999999999854

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-101  Score=900.41  Aligned_cols=573  Identities=38%  Similarity=0.614  Sum_probs=531.7

Q ss_pred             chHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           24 LPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYA  103 (1252)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (1252)
                      ..+++++.|.++..| .+..+.++.++........+.+.|+++|.+.... +.   ...+......+.++.++.++++++
T Consensus       133 ~~~~rl~~l~~~~~~-~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~-~~---~~~~~~~~~~l~~l~~~~a~~~~~  207 (716)
T KOG0058|consen  133 TLLKRLLGLLKPEWK-WLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGD-DS---ADALKRACTILLGLFLIGALANAI  207 (716)
T ss_pred             hHHHHHHHHhchhHH-HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhcc-ch---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            368899999887644 5666666666666555555667899999876511 11   223344566677888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          104 EIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVS  183 (1252)
Q Consensus       104 ~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~  183 (1252)
                      +.+++.++++++..++|.++|+++++++++|||.+ ++||++||+++|++.+.+.++..+...+.+++..++++++|+++
T Consensus       208 r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~  286 (716)
T KOG0058|consen  208 RGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSL  286 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence            99999999999999999999999999999999976 79999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 000856          184 AWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYK  263 (1252)
Q Consensus       184 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  263 (1252)
                      ||+|+++.++.+|+++++..+++++.++.+++.|++.++++....|.+++|||||+|+.|+.+.+||.+..++..+...|
T Consensus       287 S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k  366 (716)
T KOG0058|consen  287 SWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKK  366 (716)
T ss_pred             hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000856          264 AGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIK  343 (1252)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~  343 (1252)
                      .+...+..+....+..++..+.+++||++++.+|.++.|.+.+++++......++..+...+..++++..|.+|++|+++
T Consensus       367 ~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~d  446 (716)
T KOG0058|consen  367 EAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMD  446 (716)
T ss_pred             HHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhc
Confidence            99988988888888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcE
Q 000856          344 QKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH  423 (1252)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~  423 (1252)
                      .+|..+.+.  ...+....+.|+|+||+|+||++++.++|+|+||+|+|||+||+||||||||||++++|.++|+|++|+
T Consensus       447 r~P~i~~~G--~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~  524 (716)
T KOG0058|consen  447 RKPRIPLTG--TLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGR  524 (716)
T ss_pred             cCCCCCCCC--ccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCe
Confidence            999876541  112225678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCC
Q 000856          424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQ  503 (1252)
Q Consensus       424 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~  503 (1252)
                      |.+||+|++++++.++|++||+|.|||.||++||+|||.||.++.+++++..+++.+++|+||..+|+||+|.+||+|.+
T Consensus       525 IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~q  604 (716)
T KOG0058|consen  525 ILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQ  604 (716)
T ss_pred             EEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEec
Q 000856          504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETG  583 (1252)
Q Consensus       504 LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g  583 (1252)
                      |||||||||||||||++||.||||||+|||||+++|..++++|.++.+++|||+|+||++++++||+|+|+++|+++|.|
T Consensus       605 LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G  684 (716)
T KOG0058|consen  605 LSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMG  684 (716)
T ss_pred             ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHhcc-cchHHHHHHHHh
Q 000856          584 THEELIAKA-GAYASLIRFQEM  604 (1252)
Q Consensus       584 ~~~~l~~~~-~~~~~~~~~~~~  604 (1252)
                      +|+|++++. |.|+++.+.|..
T Consensus       685 ~h~eLl~~~~gly~~Lv~~q~~  706 (716)
T KOG0058|consen  685 THDELLSKPNGLYAKLVQRQLD  706 (716)
T ss_pred             cHHHHhhCcccHHHHHHHHhcc
Confidence            999999988 899999887754

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.8e-98  Score=920.53  Aligned_cols=579  Identities=44%  Similarity=0.756  Sum_probs=546.3

Q ss_pred             CCchHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000856           22 QSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSS  101 (1252)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (1252)
                      .+.++++++++.+| .|.++++|++++++.|..+|+++++++.++..|...+  ++........|++++++++++.+++.
T Consensus       648 ~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~--~~~~~~~~~~~al~f~~l~~~~~i~~  724 (1228)
T KOG0055|consen  648 EKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPD--DDELKREVRAWALIFLGLGIVSGITN  724 (1228)
T ss_pred             ccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45679999999877 5888999999999999999999999999999987543  22233334459999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          102 YAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGF  181 (1252)
Q Consensus       102 ~~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~  181 (1252)
                      +++.+++.+.++++..|+|...|+++++++.+|||...++|.+.+|+.+|...++..+.+.+..++.++..++++++++|
T Consensus       725 ~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf  804 (1228)
T KOG0055|consen  725 FLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAF  804 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999655559999999999999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 000856          182 VSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLG  261 (1252)
Q Consensus       182 ~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~  261 (1252)
                      +++|+|+++++++.|++.+..+...+.+.....+..+...+.+++..|++.|||||++|+.|+++.+.|.+..++..+..
T Consensus       805 ~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~  884 (1228)
T KOG0055|consen  805 IYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSS  884 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          262 YKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEI  341 (1252)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~  341 (1252)
                      .|.+.+.++.+++.+.+.++++++.+|||++++.+|.+++.++|..++.+.+....+.+.....+.+.+++.|+.+++++
T Consensus       885 ~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i  964 (1228)
T KOG0055|consen  885 FKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEI  964 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888888888889999999999999999999999


Q ss_pred             HccCCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC
Q 000856          342 IKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA  421 (1252)
Q Consensus       342 l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~  421 (1252)
                      ++++|.++.+++.+...++..|+|+++||+|+||++|+.++|+|+||+|++|+.+||||||||||||++.+|.|+|+|++
T Consensus       965 ~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~ 1044 (1228)
T KOG0055|consen  965 LDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA 1044 (1228)
T ss_pred             hcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence            99998766544333334556789999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCC
Q 000856          422 GHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERG  501 (1252)
Q Consensus       422 G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g  501 (1252)
                      |.|.+||+|+++++++++|+++|.|.|||.||++||||||+||....+.+++.+|++.+++|+|+..||+||||.+||+|
T Consensus      1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG 1124 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERG 1124 (1228)
T ss_pred             CeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCccc
Confidence            99999999999999999999999999999999999999999996568999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEE
Q 000856          502 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVE  581 (1252)
Q Consensus       502 ~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~  581 (1252)
                      .+||||||||||||||+++||+||||||+|||||.++++.++++|++.+.|+|+|+|+||++++++||.|+|+++|+|+|
T Consensus      1125 ~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1125 VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVE 1204 (1228)
T ss_pred             CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecChHHHHhcccchHHHHHHHH
Q 000856          582 TGTHEELIAKAGAYASLIRFQE  603 (1252)
Q Consensus       582 ~g~~~~l~~~~~~~~~~~~~~~  603 (1252)
                      +|+|++|++++|.|.++...|.
T Consensus      1205 ~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1205 QGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred             cccHHHHHhCCCchHHHhhhcc
Confidence            9999999999999999987653

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=9e-93  Score=867.60  Aligned_cols=567  Identities=31%  Similarity=0.500  Sum_probs=524.7

Q ss_pred             HHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          674 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFS  753 (1252)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  753 (1252)
                      .+++....+.++.+.-.++.+++.+++..+.+++...++|.+.....   ........+.++.++++..++.+++.++..
T Consensus       143 ~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~---~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~  219 (709)
T COG2274         143 SWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS---RSTLTVLAIGLLLAALFEALLRLLRTYLIA  219 (709)
T ss_pred             HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445556666666677777777788888888888887765432   222334455666677788899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          754 IMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVS  833 (1252)
Q Consensus       754 ~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  833 (1252)
                      ..+.++...+-.++++|++++|++||.  +++.|++++|+ +|++.++++++..+...+.+++.+++.++++++++|+++
T Consensus       220 ~~~~rld~~l~~~~~~hll~Lpl~~f~--~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~  296 (709)
T COG2274         220 HLGKRLDLELSGRFFRHLLRLPLSYFE--KRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLT  296 (709)
T ss_pred             HHHHHHhHHHHHHHHHHHHcCcHHHcc--CCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999996  48999999998 899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000856          834 LLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA  913 (1252)
Q Consensus       834 l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  913 (1252)
                      +++++.+|++++..++..+.+++..++.....+..++.+.|++.|++|||+.+.|.++..+|++.+.++.+...+.....
T Consensus       297 li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~  376 (709)
T COG2274         297 LIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLA  376 (709)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000856          914 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRI  993 (1252)
Q Consensus       914 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~  993 (1252)
                      .....+..++..+..++++|+|+.+|..|.+|+|+++++.++...+..|+..+++.+.++++...+.+|+.++++.++|.
T Consensus       377 ~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~  456 (709)
T COG2274         377 LILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQ  456 (709)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988775


Q ss_pred             CCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 000856          994 DPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073 (1252)
Q Consensus       994 ~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG 1073 (1252)
                      +.+.. ....++..|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+|+|.|+|+|++|+|++||
T Consensus       457 ~~~~~-~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg  534 (709)
T COG2274         457 EGDKT-LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDG  534 (709)
T ss_pred             ccccc-cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence            44332 22345678999999999999754 34799999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 000856         1074 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 1153 (1252)
Q Consensus      1074 ~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQ 1153 (1252)
                      +|+++++++++|++|+|||||+++|+|||||||++++|+.++||+++|++.+|+++||.++|.||||++||+|.+|||||
T Consensus       535 ~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQ  614 (709)
T COG2274         535 VDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQ  614 (709)
T ss_pred             EeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhh
Q 000856         1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1154 rQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||||+|||||++||+||||||||||||++||+.|.+.|.+..++||+|+||||+++++.||||+|||+|||+|+|+|+||
T Consensus       615 rQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~el  694 (709)
T COG2274         615 RQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEEL  694 (709)
T ss_pred             HHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHhh
Q 000856         1234 VSRPDGAYSRLLQLQH 1249 (1252)
Q Consensus      1234 l~~~~g~y~~l~~~q~ 1249 (1252)
                      ++. +|.|+++++.|.
T Consensus       695 l~~-~g~y~~l~~~q~  709 (709)
T COG2274         695 LAQ-GGLYARLYQQQE  709 (709)
T ss_pred             HHh-cChHHHHHhccC
Confidence            998 999999998873

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=6.3e-87  Score=816.17  Aligned_cols=568  Identities=32%  Similarity=0.469  Sum_probs=516.5

Q ss_pred             CchHHHHHHhhchhhHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 000856           23 SLPFFQLFSFADKYDWC--LMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFS  100 (1252)
Q Consensus        23 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (1252)
                      +..+.+++....++++.  .+++..++..+.+++.|++   +..++|.+.... +    .+.+...++.+++.+++.+++
T Consensus       139 ~~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~---~q~viD~Vl~~~-~----~~tL~vl~ig~~~~~l~~~~l  210 (709)
T COG2274         139 PFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLF---SQIVIDKVLPDA-S----RSTLTVLAIGLLLAALFEALL  210 (709)
T ss_pred             ccchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhccC-c----hhHHHHHHHHHHHHHHHHHHH
Confidence            33456666666665443  2334444555566667764   677888876543 1    234455666777788889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          101 SYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG  180 (1252)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~  180 (1252)
                      .+++.+...+.+.|+..++-.++++|++++|++||+++ ++|++++|+. |.++|+++++..+...+..+..+++.++++
T Consensus       211 ~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm  288 (709)
T COG2274         211 RLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKR-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVM  288 (709)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCC-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999865 8999999985 999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHH
Q 000856          181 FVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKL  260 (1252)
Q Consensus       181 ~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~  260 (1252)
                      ++++|.|+++.++.+|+.+++..++.+.+++..++..+..++.++...|++.|+++||+.+.|.++..+|++...+..+.
T Consensus       289 ~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~  368 (709)
T COG2274         289 FLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNI  368 (709)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          261 GYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLME  340 (1252)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~  340 (1252)
                      .++..+..........++..++.++++|+|+++|.+|.+|.|.++++.+.......|+..+...+..+++++.+.+|+.+
T Consensus       369 ~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~d  448 (709)
T COG2274         369 GFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGD  448 (709)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888889999999999999999999999999999998887778788999999999999999999999999


Q ss_pred             HHccCCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC
Q 000856          341 IIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN  420 (1252)
Q Consensus       341 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~  420 (1252)
                      +++.++|.+.+.. ....+...++|+++||+|+|+..+ .++|+|+||+|++||++||||+||||||||+|+|.|+|+|+
T Consensus       449 il~~~~E~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~  526 (709)
T COG2274         449 ILDTPPEQEGDKT-LIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ  526 (709)
T ss_pred             HhcCCcccccccc-cccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            9999877543221 223345578899999999998653 47999999999999999999999999999999999999999


Q ss_pred             CcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCC
Q 000856          421 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGER  500 (1252)
Q Consensus       421 ~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  500 (1252)
                      +|+|++||.|++++++..+|++|+||+||+.||+|||+|||.++.|+.+++++.++|+.+++++++..+|.||+|.+||+
T Consensus       527 ~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~  606 (709)
T COG2274         527 QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEG  606 (709)
T ss_pred             CceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEE
Q 000856          501 GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVV  580 (1252)
Q Consensus       501 g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~  580 (1252)
                      |.+||||||||++|||||+++|+||||||||||||+++++.+.+.|.+...|+|+|+||||++++++||||+||++|+|+
T Consensus       607 G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv  686 (709)
T COG2274         607 GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIV  686 (709)
T ss_pred             CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecChHHHHhcccchHHHHHHH
Q 000856          581 ETGTHEELIAKAGAYASLIRFQ  602 (1252)
Q Consensus       581 ~~g~~~~l~~~~~~~~~~~~~~  602 (1252)
                      ++|+|+|+++..|.|++++..|
T Consensus       687 ~~gs~~ell~~~g~y~~l~~~q  708 (709)
T COG2274         687 EQGSHEELLAQGGLYARLYQQQ  708 (709)
T ss_pred             ccCCHHHHHHhcChHHHHHhcc
Confidence            9999999999999999988654

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=1.3e-84  Score=808.45  Aligned_cols=554  Identities=34%  Similarity=0.559  Sum_probs=495.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          683 EWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTR  762 (1252)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  762 (1252)
                      .+ .+..+.++.++...+....+.++...++...     ........+...++++.++..++.+...++..+.+.+...+
T Consensus        13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   86 (567)
T COG1132          13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALL-----ADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVAD   86 (567)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44 5566666666666777777777777777665     11122233444455555566677777778888888999999


Q ss_pred             HHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          763 VRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPL  842 (1252)
Q Consensus       763 l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~p~  842 (1252)
                      +|.++++++++.|++||++  +++|++++|+++|++.++..+.+....+...++.+++.+++++..+|.+++++++..|+
T Consensus        87 lr~~~~~~l~~~~~~~~~~--~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~  164 (567)
T COG1132          87 LRRDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPL  164 (567)
T ss_pred             HHHHHHHHHHhCCHHHhCc--CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9999999999999999986  66999999999999999999999866666678889999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000856          843 LVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQF  922 (1252)
Q Consensus       843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  922 (1252)
                      +.+......++.++..+..++..++....+.|+++|+++||+|+.++...+++.+..+...+...+..........+..+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (567)
T COG1132         165 LALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLL  244 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888877776688888888899999999999999999999999999999999999998888888888888888889999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC
Q 000856          923 ALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEP 1002 (1252)
Q Consensus       923 ~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~ 1002 (1252)
                      +..+...+++++|..++..+.++.|.+++++.+......++..+......+..+..+.+|+++.++.+++....+..   
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---  321 (567)
T COG1132         245 LSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---  321 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---
Confidence            99999999999999999999999999999999999999999999999999999999999999999975543221111   


Q ss_pred             CCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHH
Q 000856         1003 VETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 1082 (1252)
Q Consensus      1003 ~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~ 1082 (1252)
                      .....++|+|+||+|+|++  ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+||++++++
T Consensus       322 ~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~  399 (567)
T COG1132         322 LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLD  399 (567)
T ss_pred             CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHH
Confidence            2234577999999999973  34799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1083 SLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1083 ~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      .||++|++|||||+||+|||+|||++|+++++|||+++|++.++++|+++++|+||||++||+|.+||||||||||||||
T Consensus       400 ~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARa  479 (567)
T COG1132         400 SLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARA  479 (567)
T ss_pred             HHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcCCCchhH
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYS 1242 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~ 1242 (1252)
                      ++++|+|||||||||+||++||+.|++++++..+++|+|+||||++++++||+|+|||+|+|+|+|+|+||+++ +|.|+
T Consensus       480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~  558 (567)
T COG1132         480 LLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYA  558 (567)
T ss_pred             HhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHH
Confidence            99999999999999999999999999999988888999999999999999999999999999999999999998 99999


Q ss_pred             HHHHHhhh
Q 000856         1243 RLLQLQHH 1250 (1252)
Q Consensus      1243 ~l~~~q~~ 1250 (1252)
                      +||+.|..
T Consensus       559 ~l~~~~~~  566 (567)
T COG1132         559 RLYQAQGG  566 (567)
T ss_pred             HHHHHhhc
Confidence            99999864

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=3.4e-84  Score=809.69  Aligned_cols=570  Identities=24%  Similarity=0.300  Sum_probs=486.3

Q ss_pred             HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          673 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF  752 (1252)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  752 (1252)
                      +++++++.++.++.++++++..++..++....++++..+++.....+..  ......+..+++++.++..++.+++.++.
T Consensus        10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (588)
T PRK11174         10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP--REALLPPFILLILLFVLRALLAWLRERVG   87 (588)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677777888888888888888888888888888888865422111  11122234444555556677778888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          753 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV  832 (1252)
Q Consensus       753 ~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  832 (1252)
                      .+.+.+...++|.++++++++.|.+||+  ++++|++++|+++|++.+++.+...+..++.+++.++++++++++++|++
T Consensus        88 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  165 (588)
T PRK11174         88 FKAGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAA  165 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999997  47899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000856          833 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT  912 (1252)
Q Consensus       833 ~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~  912 (1252)
                      ++++++++|+.+++.....+..++..++..+..++..+.+.|.++|+++||+|++++.+.+++.+..++..+...+..+.
T Consensus       166 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  245 (588)
T PRK11174        166 GLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRM  245 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888877777788888888888999999999999999999999999999999999999888887777766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          913 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKV---------IKVFVVLVVTANSVAETVSLAPEIIRGGESVGSV  983 (1252)
Q Consensus       913 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri  983 (1252)
                      ......+..++..+...++.+++...+ .|.+++|.+         +.+..+......|+..+.....++.++..+.+|+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri  324 (588)
T PRK11174        246 AFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESL  324 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666555555555544444444433 366666643         2222344556788999999999999999999999


Q ss_pred             HHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC
Q 000856          984 FSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus       984 ~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~ 1063 (1252)
                      .++++.+++.++... .....+..+.|+|+||+|.|++  ++++|+|+||+|+|||++||||+||||||||+++|+|+| 
T Consensus       325 ~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-  400 (588)
T PRK11174        325 VTFLETPLAHPQQGE-KELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-  400 (588)
T ss_pred             HHHHcCCCcccCCCc-cccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-
Confidence            999986543221111 0111112457999999988753  346999999999999999999999999999999999999 


Q ss_pred             CCCceEEECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccC
Q 000856         1064 PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVG 1143 (1252)
Q Consensus      1064 p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vg 1143 (1252)
                      |++|+|++||+|+++++.+++|++|+||||||++|+|||||||.+++++++|||+++|++.++++++++++|+||||.+|
T Consensus       401 p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vg  480 (588)
T PRK11174        401 PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIG  480 (588)
T ss_pred             CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccc
Confidence            99999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCE
Q 000856         1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGR 1223 (1252)
Q Consensus      1144 e~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 1223 (1252)
                      |+|.+||||||||||||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++..||+|+||++|+
T Consensus       481 e~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~  560 (588)
T PRK11174        481 DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQ  560 (588)
T ss_pred             cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCe
Confidence            99999999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             EEEecChhhhhcCCCchhHHHHHHhhhcC
Q 000856         1224 IVEQGSHSELVSRPDGAYSRLLQLQHHHI 1252 (1252)
Q Consensus      1224 Ive~G~~~eLl~~~~g~y~~l~~~q~~~~ 1252 (1252)
                      |+|.|+|+||+++ +|.|++++..|.+++
T Consensus       561 i~e~G~~~eL~~~-~~~y~~l~~~q~~~~  588 (588)
T PRK11174        561 IVQQGDYAELSQA-GGLFATLLAHRQEEI  588 (588)
T ss_pred             EeecCCHHHHHhc-chHHHHHHHHhhcCC
Confidence            9999999999987 899999999998764

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.6e-83  Score=735.82  Aligned_cols=553  Identities=27%  Similarity=0.364  Sum_probs=494.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          689 MGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMML  768 (1252)
Q Consensus       689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  768 (1252)
                      +..+.+++.+++....+++++..++..+....   ......++..++++.++..++...+.....+.+.++...+|+.++
T Consensus         4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l   80 (559)
T COG4988           4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL   80 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666667777777778877777665432   223344555666666667777778888888899999999999999


Q ss_pred             HHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          769 AAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANF  848 (1252)
Q Consensus       769 ~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~p~~~~~~~  848 (1252)
                      +++.+.++.|-..  .++|++.+.....++.++.++...++.+...++..+..++.+++++|..+++++++.|++.++++
T Consensus        81 ~~l~~~gp~~~~~--~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMi  158 (559)
T COG4988          81 DKLAKLGPAFIAQ--KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMI  158 (559)
T ss_pred             HHHHhCChhhhcC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            9999999998864  78899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          849 AQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASE  928 (1252)
Q Consensus       849 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  928 (1252)
                      ......++..++.......++.++.|.++|+.|+|+||..+...++..+...+..+..++.-+..-+...+..++.+++.
T Consensus       159 lvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi  238 (559)
T COG4988         159 LVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI  238 (559)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999888888888899988888


Q ss_pred             HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCcc
Q 000856          929 ALILWYGVHLVGK-GVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIR 1007 (1252)
Q Consensus       929 ~~~~~~g~~lv~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~ 1007 (1252)
                      +++..+.+..... |.+++...+.++...-=++.|+.++.+.++....+..+.+.++.+++.+.+..+........+..+
T Consensus       239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~  318 (559)
T COG4988         239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP  318 (559)
T ss_pred             HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence            8776554444444 899998888888888888999999999999999998999999999887655433322111122223


Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcc
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1087 (1252)
                      .+++++|++|+|++.+  ++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.++||++
T Consensus       319 ~ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~  396 (559)
T COG4988         319 IEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ  396 (559)
T ss_pred             ceeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence            4566779999998543  79999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 000856         1088 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 1167 (1252)
Q Consensus      1088 i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p 1167 (1252)
                      ++||||+|++|+|||||||.+++++.+||+++++++.+++.++++. |+|+||++||+|.+|||||+||+++|||+++++
T Consensus       397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~  475 (559)
T COG4988         397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA  475 (559)
T ss_pred             eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcCCCchhHHHHHH
Q 000856         1168 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247 (1252)
Q Consensus      1168 ~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~l~~~ 1247 (1252)
                      ++++|||||||||.+||+.|++.|.++++++|||+||||++.++++|+|+|||+||++|.|+|++|.++ +|.|++|+++
T Consensus       476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~  554 (559)
T COG4988         476 SLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQ  554 (559)
T ss_pred             CEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999997 8999999998


Q ss_pred             hhh
Q 000856         1248 QHH 1250 (1252)
Q Consensus      1248 q~~ 1250 (1252)
                      |.+
T Consensus       555 q~~  557 (559)
T COG4988         555 QEG  557 (559)
T ss_pred             Hhc
Confidence            864

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=3.4e-83  Score=810.49  Aligned_cols=564  Identities=32%  Similarity=0.503  Sum_probs=501.4

Q ss_pred             HHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          672 YFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF  751 (1252)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (1252)
                      .+++++++.++.++++...+++.++..++....+++++.+++........   ........+++++.++..++.+++.++
T Consensus       148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~  224 (711)
T TIGR00958       148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP---PALASAIFFMCLLSIASSVSAGLRGGS  224 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777777788887888888888888888888888888876532211   111222334444555566777788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          752 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR  831 (1252)
Q Consensus       752 ~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  831 (1252)
                      +.+.+.++..++|.+++++++++|++||++  ++.|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.
T Consensus       225 ~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~  302 (711)
T TIGR00958       225 FNYTMARINLRIREDLFRSLLRQDLGFFDE--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPR  302 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            999999999999999999999999999975  789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 000856          832 VSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL  911 (1252)
Q Consensus       832 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~  911 (1252)
                      +++++++.+|+.+++.....++.++..++.++..++....+.|+++|+++||+|+.++++.+++.+..++..+...+...
T Consensus       303 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  382 (711)
T TIGR00958       303 LTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKAL  382 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888888888888888888889999999999999999999999999999999999998888887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000856          912 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST  991 (1252)
Q Consensus       912 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~  991 (1252)
                      ...........+..+..++++++|.+++..|.++.|.++++..+......++..+.....++.++..+.+|+.++++.++
T Consensus       383 ~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~  462 (711)
T TIGR00958       383 AYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKP  462 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            77776677777777788888999999999999999999999999999999999999999999999999999999998765


Q ss_pred             CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE
Q 000856          992 RIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 1071 (1252)
Q Consensus       992 ~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~i 1071 (1252)
                      +.++...  ..+++.++.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus       463 ~~~~~~~--~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i  540 (711)
T TIGR00958       463 NIPLTGT--LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL  540 (711)
T ss_pred             CCCCCCC--CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence            4322111  11123457899999999998655567999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 000856         1072 DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 1151 (1252)
Q Consensus      1072 dG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSg 1151 (1252)
                      ||+|+++++.+.+|++|+||||||.+|+|||||||.++.++.+||+++++++.++++++++++|+|+||.+||+|.+|||
T Consensus       541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG  620 (711)
T TIGR00958       541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG  620 (711)
T ss_pred             CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence            99999999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChh
Q 000856         1152 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHS 1231 (1252)
Q Consensus      1152 GQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~ 1231 (1252)
                      |||||||||||++++|+|||||||||+||+++|+.+++  ....+++|+|+||||++++..||+|+||++|+|+|.|+|+
T Consensus       621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~  698 (711)
T TIGR00958       621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHK  698 (711)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHH
Confidence            99999999999999999999999999999999999999  3345789999999999999999999999999999999999


Q ss_pred             hhhcCCCchhHHHH
Q 000856         1232 ELVSRPDGAYSRLL 1245 (1252)
Q Consensus      1232 eLl~~~~g~y~~l~ 1245 (1252)
                      ||+++ +|.|++|+
T Consensus       699 eL~~~-~~~y~~lv  711 (711)
T TIGR00958       699 QLMED-QGCYKHLV  711 (711)
T ss_pred             HHHhC-CCchHhcC
Confidence            99987 78999873

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.5e-82  Score=806.56  Aligned_cols=562  Identities=25%  Similarity=0.350  Sum_probs=498.6

Q ss_pred             HHHHHHh-hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          673 FLRLLKL-NAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF  751 (1252)
Q Consensus       673 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (1252)
                      ++++++. .++.++.+...++.+++..++....++++..+++.+.....   ......+...++++.++..++.+++.++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~  199 (686)
T TIGR03797       123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQSLA  199 (686)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444 34556666666667777777777778888888876653211   1122233444555566677788888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          752 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR  831 (1252)
Q Consensus       752 ~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  831 (1252)
                      ..+.+.++..++|.++++++++.|++||+  +++.|++++|++ |++.+++.+...+...+..++.++++++++++++|+
T Consensus       200 ~~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  276 (686)
T TIGR03797       200 VLRLETRMDASLQAAVWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWK  276 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999996  488999999997 799999999988888888888888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 000856          832 VSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL  911 (1252)
Q Consensus       832 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~  911 (1252)
                      +++++++++|+.+++.++..+..++..++..+..++..+.+.|+++|+++||+++.++++.++|.+..++..+...+...
T Consensus       277 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  356 (686)
T TIGR03797       277 LALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQR  356 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888888888888888888899999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000856          912 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST  991 (1252)
Q Consensus       912 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~  991 (1252)
                      ...+...+..++..+..++++|+|.+++..|.++.|.++++..+......|+..+.....++.....+.+|+.++++.++
T Consensus       357 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~  436 (686)
T TIGR03797       357 IENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALP  436 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            88888888888888899999999999999999999999999999999999999999999999999999999999988654


Q ss_pred             CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEE
Q 000856          992 RIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 1071 (1252)
Q Consensus       992 ~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~i 1071 (1252)
                      +.+...   ....+..+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++
T Consensus       437 e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i  512 (686)
T TIGR03797       437 EVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY  512 (686)
T ss_pred             ccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence            432111   1112345689999999999643 357999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 000856         1072 DGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 1151 (1252)
Q Consensus      1072 dG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSg 1151 (1252)
                      ||+|+++++++++|++|+||||||.+|+|||||||.++++ +++|++++|++.++++++++++|+|+||++||+|.+|||
T Consensus       513 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG  591 (686)
T TIGR03797       513 DGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG  591 (686)
T ss_pred             CCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence            9999999999999999999999999999999999999988 999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChh
Q 000856         1152 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHS 1231 (1252)
Q Consensus      1152 GQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~ 1231 (1252)
                      ||||||+||||++++|+|||||||||+||++||+.+++.|++.  ++|+|+||||+++++.||+|+||++|+|+|.|+|+
T Consensus       592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~  669 (686)
T TIGR03797       592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYD  669 (686)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHH
Confidence            9999999999999999999999999999999999999999886  68999999999999999999999999999999999


Q ss_pred             hhhcCCCchhHHHHHHh
Q 000856         1232 ELVSRPDGAYSRLLQLQ 1248 (1252)
Q Consensus      1232 eLl~~~~g~y~~l~~~q 1248 (1252)
                      ||+++ +|.|++|++.|
T Consensus       670 ~Ll~~-~~~y~~l~~~q  685 (686)
T TIGR03797       670 ELMAR-EGLFAQLARRQ  685 (686)
T ss_pred             HHHhC-CcHHHHHHHhc
Confidence            99987 89999999876

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=2.2e-82  Score=793.46  Aligned_cols=568  Identities=21%  Similarity=0.256  Sum_probs=483.0

Q ss_pred             hHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           25 PFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAE  104 (1252)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (1252)
                      .++++++|.+++++. ++++++++++.+++.+..+++++.++|.+...+.+.    .....+...++++.++..++.+++
T Consensus         9 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~   83 (588)
T PRK11174          9 LTRWLKQQSKPAKRW-LNLSILLGFLSGLLLIAQAWLLATILQALIIENIPR----EALLPPFILLILLFVLRALLAWLR   83 (588)
T ss_pred             hhHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367788888877654 556777777777777777778899998764221111    122233444455566777888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000856          105 IACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSA  184 (1252)
Q Consensus       105 ~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  184 (1252)
                      .++....+.++..++|.+++++++++|+++|++. ++|++++|+++|++.+++++...++.++..++.+++.++++++++
T Consensus        84 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  162 (588)
T PRK11174         84 ERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGK-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPIN  162 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999865 799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHH
Q 000856          185 WRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKA  264 (1252)
Q Consensus       185 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~  264 (1252)
                      |.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.+++.+..++..+...+.
T Consensus       163 ~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~  242 (588)
T PRK11174        163 WAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEV  242 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988888999999999999999999999999999999999999999999999999999988888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          265 GMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKA---------FTAIFSAIVGGMSLGQSFSNLGAFSKGKAAG  335 (1252)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~  335 (1252)
                      .+......++..++..+..+++++++++.+. |.++.|.+         +.++.+......|+..+...+..+.++..+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~  321 (588)
T PRK11174        243 LRMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAA  321 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766665555555555544444455555443 66776643         1111222334467888888888999999999


Q ss_pred             HHHHHHHccCCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhc
Q 000856          336 YKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       336 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g  415 (1252)
                      +|+.++++.+++.+.+. .........+.|+++||+|.|++  +.++|+|+||+|++||++|||||||||||||+++|+|
T Consensus       322 ~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g  398 (588)
T PRK11174        322 ESLVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG  398 (588)
T ss_pred             HHHHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            99999998754321111 11111112346999999987753  3468999999999999999999999999999999999


Q ss_pred             ccCCCCcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccc
Q 000856          416 FYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYST  495 (1252)
Q Consensus       416 ~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  495 (1252)
                      ++ |++|+|.+||+|+++++.+++|++|+||+|+|+||++||+|||.+|.|+.++++++++++.++++++++.+|+|++|
T Consensus       399 ~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT  477 (588)
T PRK11174        399 FL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDT  477 (588)
T ss_pred             CC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccc
Confidence            99 99999999999999999999999999999999999999999999999889999999999999999999999999999


Q ss_pred             cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEe
Q 000856          496 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQ  575 (1252)
Q Consensus       496 ~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~  575 (1252)
                      .+||+|.+||||||||++||||++++|+|||||||||+||+++++.+.+.|.++.+++|+|+||||++.+..||+|++|+
T Consensus       478 ~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~  557 (588)
T PRK11174        478 PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQ  557 (588)
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             CCEEEEecChHHHHhcccchHHHHHHHH
Q 000856          576 QGQVVETGTHEELIAKAGAYASLIRFQE  603 (1252)
Q Consensus       576 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~  603 (1252)
                      +|+++++|+|+|++++++.|++++..|.
T Consensus       558 ~G~i~e~G~~~eL~~~~~~y~~l~~~q~  585 (588)
T PRK11174        558 DGQIVQQGDYAELSQAGGLFATLLAHRQ  585 (588)
T ss_pred             CCeEeecCCHHHHHhcchHHHHHHHHhh
Confidence            9999999999999999999999987654

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=7.1e-82  Score=803.13  Aligned_cols=563  Identities=23%  Similarity=0.378  Sum_probs=498.3

Q ss_pred             HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          673 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF  752 (1252)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  752 (1252)
                      +++++.+.++.++++...++.+++..++....++++..+++.+.....   ......+...++++.++..++.+++.++.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  220 (708)
T TIGR01193       144 LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSYIQIFLL  220 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555666666666777777777777788888888876653221   11122233344445555667778888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          753 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV  832 (1252)
Q Consensus       753 ~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  832 (1252)
                      .+.+.++..+++.++++++++.|++||+.  ++.|++++|++ |.+.+.+.+...+...+..++.++++++++++++|++
T Consensus       221 ~~~~~~~~~~l~~~~~~~ll~l~~~~f~~--~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  297 (708)
T TIGR01193       221 NVLGQRLSIDIILSYIKHLFELPMSFFST--RRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLL  297 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            99999999999999999999999999974  89999999997 9999999998888888888888888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000856          833 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT  912 (1252)
Q Consensus       833 ~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~  912 (1252)
                      ++++++.+|+++++.++..+..++..++..+..+...+.+.|+++|+++||++|.++.+.+++.+...+..+...+....
T Consensus       298 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  377 (708)
T TIGR01193       298 FLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKA  377 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988888899888999999999999999999999999999999999999999999988888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000856          913 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR  992 (1252)
Q Consensus       913 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~  992 (1252)
                      ......+..++..+..++++++|.+++..|.+|.|.++++..+......|+..+.....++..+..+.+|+.++++.+++
T Consensus       378 ~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e  457 (708)
T TIGR01193       378 DQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSE  457 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            77777778888888888999999999999999999999999999999999999999999999999999999999986554


Q ss_pred             CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 000856          993 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 1072 (1252)
Q Consensus       993 ~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~id 1072 (1252)
                      .+.... ..+.++..+.|+|+||+|+|++  ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus       458 ~~~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~id  534 (708)
T TIGR01193       458 FINKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLN  534 (708)
T ss_pred             cccccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEC
Confidence            322111 0112234578999999999963  3469999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCHHHHhcccEEEccccccCcccHHHHhccC-CCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 000856         1073 GKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 1151 (1252)
Q Consensus      1073 G~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~-~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSg 1151 (1252)
                      |+|+++++++++|++|+||||||++|+|||||||.++ .+++++++++++++.+++++++.++|+||||++||+|.+|||
T Consensus       535 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSg  614 (708)
T TIGR01193       535 GFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISG  614 (708)
T ss_pred             CEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCH
Confidence            9999999999999999999999999999999999998 578999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChh
Q 000856         1152 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHS 1231 (1252)
Q Consensus      1152 GQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~ 1231 (1252)
                      ||||||+||||++++|+|||||||||+||++||+.+++.|++. +++|+|+||||+++++.||+|+||++|+++|.|+|+
T Consensus       615 GQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~  693 (708)
T TIGR01193       615 GQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHD  693 (708)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHH
Confidence            9999999999999999999999999999999999999999885 689999999999999999999999999999999999


Q ss_pred             hhhcCCCchhHHHHH
Q 000856         1232 ELVSRPDGAYSRLLQ 1246 (1252)
Q Consensus      1232 eLl~~~~g~y~~l~~ 1246 (1252)
                      ||+++ +|.|++|++
T Consensus       694 ~L~~~-~~~y~~l~~  707 (708)
T TIGR01193       694 ELLDR-NGFYASLIH  707 (708)
T ss_pred             HHHhc-CCcHHHHhh
Confidence            99987 899999975

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=1e-81  Score=802.71  Aligned_cols=563  Identities=25%  Similarity=0.353  Sum_probs=497.6

Q ss_pred             HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          673 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF  752 (1252)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  752 (1252)
                      ++.++...++.++.+...++++++..++....+++...+++........   .....+...++++.++..++.+++.++.
T Consensus       142 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~  218 (710)
T TIGR03796       142 LRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ---DWLRPLLLGMGLTALLQGVLTWLQLYYL  218 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555666666666666666677777777788877765532211   1122233444455566677788889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          753 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV  832 (1252)
Q Consensus       753 ~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  832 (1252)
                      .+.+.++..+++.++++++++.|++||+.  +++|++++|++.| +.+++++...+...+.+++.+++.++++++++|++
T Consensus       219 ~~~~~~~~~~l~~~~~~~ll~l~~~~~~~--~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  295 (710)
T TIGR03796       219 RRLQIKLAVGMSARFLWHILRLPVRFFAQ--RHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVL  295 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHcC--CcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999974  8899999999988 68999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000856          833 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT  912 (1252)
Q Consensus       833 ~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~  912 (1252)
                      ++++++.+|+.+++.++..+..++..++..+..++..+.+.|+++|+++||++++++.+.++|.+...+..+...+....
T Consensus       296 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  375 (710)
T TIGR03796       296 TLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVL  375 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888888888888888888899999999999999999999999999999999999999888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000856          913 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR  992 (1252)
Q Consensus       913 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~  992 (1252)
                      ......+..++..+..++++++|++++..|.++.|.++++..+......|+..+...+.++.....+.+|+.++++.+++
T Consensus       376 ~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e  455 (710)
T TIGR03796       376 TQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVD  455 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence            88888888888888999999999999999999999999999999999999999999999999999999999999987654


Q ss_pred             CCCCCC---C-CCCC-CCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc
Q 000856          993 IDPDDP---D-AEPV-ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067 (1252)
Q Consensus       993 ~~~~~~---~-~~~~-~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G 1067 (1252)
                      .+....   . .... ++..+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|
T Consensus       456 ~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G  534 (710)
T TIGR03796       456 PLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG  534 (710)
T ss_pred             cccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence            322110   0 0111 2345789999999999743 35799999999999999999999999999999999999999999


Q ss_pred             eEEECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCC
Q 000856         1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGV 1147 (1252)
Q Consensus      1068 ~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~ 1147 (1252)
                      +|++||+|+++++++++|++|+||||||.+|+|||||||.++.++++++++++|++.+++++++.++|+|+||++||+|.
T Consensus       535 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~  614 (710)
T TIGR03796       535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGA  614 (710)
T ss_pred             EEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCC
Confidence            99999999999999999999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEe
Q 000856         1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 1227 (1252)
Q Consensus      1148 ~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~ 1227 (1252)
                      +|||||||||+||||++++|+|||||||||+||++||+.+.+.|++  .++|+|+||||++++..||||+||++|+|+|.
T Consensus       615 ~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~  692 (710)
T TIGR03796       615 NLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQR  692 (710)
T ss_pred             CCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEe
Confidence            9999999999999999999999999999999999999999999987  48999999999999999999999999999999


Q ss_pred             cChhhhhcCCCchhHHHH
Q 000856         1228 GSHSELVSRPDGAYSRLL 1245 (1252)
Q Consensus      1228 G~~~eLl~~~~g~y~~l~ 1245 (1252)
                      |+|+||+++ +|.|++|+
T Consensus       693 G~~~~Ll~~-~~~y~~l~  709 (710)
T TIGR03796       693 GTHEELWAV-GGAYARLI  709 (710)
T ss_pred             cCHHHHHHc-CCcHHHHh
Confidence            999999987 89999987

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.6e-81  Score=716.51  Aligned_cols=552  Identities=26%  Similarity=0.334  Sum_probs=496.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           44 GSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKY  123 (1252)
Q Consensus        44 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~  123 (1252)
                      ..+++.+.+++...+.+++...++.+....     .......+...++++.+++.++.+.+.......+.++..++|..+
T Consensus         5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~-----~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~   79 (559)
T COG4988           5 SALLAVLSGIAIIAQAALLADILTKLIEGQ-----LFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLV   79 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555666666666667777777765331     123455566677778888999999999999999999999999999


Q ss_pred             HHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000856          124 LEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGG  203 (1252)
Q Consensus       124 ~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~  203 (1252)
                      ++++.++++.+-.+. ++|+..+.+.+.++.++.+++.++|.++.+.+.+++.++.+++++|.-++++++++|++++++.
T Consensus        80 l~~l~~~gp~~~~~~-~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMi  158 (559)
T COG4988          80 LDKLAKLGPAFIAQK-PAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMI  158 (559)
T ss_pred             HHHHHhCChhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            999999999998764 7999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          204 LYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSW  283 (1252)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (1252)
                      +++++.++..++++..+.+.++.+.|.++|+.|+|.|+..+...+++.+..++.++..|+.-+..-.+..++.++.++..
T Consensus       159 lvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi  238 (559)
T COG4988         159 LVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI  238 (559)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998888888888889999988


Q ss_pred             HHHHHHHHHHHHc-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcCCCCc
Q 000856          284 ALVFWYAGVFIRN-GVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVN  362 (1252)
Q Consensus       284 ~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~  362 (1252)
                      +++..|.+....+ |.++....+.+++..--.+.|+..+...++.-+.+.+++++++.+++.+++..............+
T Consensus       239 AlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~  318 (559)
T COG4988         239 ALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPP  318 (559)
T ss_pred             HHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCC
Confidence            8888887777777 788887777777666667789999999999999999999999999987755322111111112222


Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhh
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ  442 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~  442 (1252)
                      ..++.+|++|+|++++  ++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||+++++++.+.||++
T Consensus       319 ~ei~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~  396 (559)
T COG4988         319 IEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQ  396 (559)
T ss_pred             ceeeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhH
Confidence            3455669999998653  68999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000856          443 IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP  522 (1252)
Q Consensus       443 i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~  522 (1252)
                      ++||+|+|.+|++|+||||++++++.+++++.++++.+++.+++.. |+|+||.+||+|.+|||||+|||++|||+++++
T Consensus       397 i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~  475 (559)
T COG4988         397 ISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPA  475 (559)
T ss_pred             eeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhcccchHHHHHHH
Q 000856          523 KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ  602 (1252)
Q Consensus       523 ~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~  602 (1252)
                      +++|||||||+||.++|+.+.+.|.++.+++|+|+||||++.+..+|+|++|++|+++++|+|+++.+++|.|+++...|
T Consensus       476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q  555 (559)
T COG4988         476 SLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQ  555 (559)
T ss_pred             CEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             Hh
Q 000856          603 EM  604 (1252)
Q Consensus       603 ~~  604 (1252)
                      +.
T Consensus       556 ~~  557 (559)
T COG4988         556 EG  557 (559)
T ss_pred             hc
Confidence            53

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=5.9e-81  Score=773.39  Aligned_cols=566  Identities=22%  Similarity=0.309  Sum_probs=487.1

Q ss_pred             HHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          674 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPA-SMERKTKEFVFIYIGAGLYAVVAYLIQHYFF  752 (1252)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  752 (1252)
                      ++++++.++.++.++++++..++..+.....+++++.+++........ ........+...++++.++..++.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (574)
T PRK11160          5 LPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVS   84 (574)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566667777777777777777777777777777777754322110 0000011112234445566677778888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          753 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV  832 (1252)
Q Consensus       753 ~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  832 (1252)
                      .+.+.++..++|.++++++++.|++||++  .++|++++|+++|++.++.++...+..++.+++.++++++++++++|++
T Consensus        85 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  162 (574)
T PRK11160         85 HDATFRVLTHLRVFTFSKLLPLSPAGLAR--YRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTL  162 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccChHhhcc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999974  7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 000856          833 SLLILGTYPLLVL-ANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL  911 (1252)
Q Consensus       833 ~l~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~  911 (1252)
                      ++++++++|++.+ ..++..+..++..++.++..+.....+.|.++|+++||+|+.++++.+++.+..++..+...+..+
T Consensus       163 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  242 (574)
T PRK11160        163 ALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQAN  242 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888887654 345556666777778888889999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000856          912 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVV-TANSVAETVSLAPEIIRGGESVGSVFSTLDRS  990 (1252)
Q Consensus       912 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~  990 (1252)
                      .......+..++..+..++++++|.+++ .|.++.|.+++++.+... ...++..+......+.++..+.+|+.++++.+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~  321 (574)
T PRK11160        243 LTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQK  321 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8888888888888888888889999884 788999998887776544 34577777788888899999999999999876


Q ss_pred             CCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEE
Q 000856          991 TRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 1070 (1252)
Q Consensus       991 ~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~ 1070 (1252)
                      ++.+....  ....+..+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+
T Consensus       322 ~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~  398 (574)
T PRK11160        322 PEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL  398 (574)
T ss_pred             CCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence            54221111  1111234679999999999743 24699999999999999999999999999999999999999999999


Q ss_pred             ECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 000856         1071 IDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 1150 (1252)
Q Consensus      1071 idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LS 1150 (1252)
                      +||+|+++++.+++|++|+||||||++|++||+|||.++.++.+|++++++++.+++++++++ |+||||++||+|.+||
T Consensus       399 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LS  477 (574)
T PRK11160        399 LNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLS  477 (574)
T ss_pred             ECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCC
Confidence            999999999999999999999999999999999999999888999999999999999999999 9999999999999999


Q ss_pred             hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 000856         1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 1230 (1252)
Q Consensus      1151 gGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~ 1230 (1252)
                      ||||||+|||||++++|+|||||||||+||++||+.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|
T Consensus       478 gGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~  557 (574)
T PRK11160        478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTH  557 (574)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCH
Confidence            99999999999999999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             hhhhcCCCchhHHHHHH
Q 000856         1231 SELVSRPDGAYSRLLQL 1247 (1252)
Q Consensus      1231 ~eLl~~~~g~y~~l~~~ 1247 (1252)
                      +||+++ +|.|++||+.
T Consensus       558 ~~l~~~-~g~y~~l~~~  573 (574)
T PRK11160        558 QELLAQ-QGRYYQLKQR  573 (574)
T ss_pred             HHHHhc-CcHHHHHHhh
Confidence            999987 8999999863

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=2.1e-81  Score=833.28  Aligned_cols=569  Identities=31%  Similarity=0.483  Sum_probs=490.3

Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           26 FFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEI  105 (1252)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (1252)
                      +.+++++..++.+ .++++++++++.++..|+++++++.+++.+....    ........|++++++++++.+++.+++.
T Consensus       813 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~l~~~~~~i~~~~~~~l~~  887 (1466)
T PTZ00265        813 LRIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDFA----NLEANSNKYSLYILVIAIAMFISETLKN  887 (1466)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666656544 3677888889999999999999999999765321    1112344577777888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhc-cCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000856          106 ACWMYTGERQVSTLRKKYLEAVLKQDVGFFDT-DARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSA  184 (1252)
Q Consensus       106 ~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~-~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  184 (1252)
                      ++..++++++..++|.++|++++++|++||++ +.++|++++|+++|++.+++++...+..++..++.++++++++++++
T Consensus       888 ~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~  967 (1466)
T PTZ00265        888 YYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFC  967 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999985 23799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----------------HHHHHHHHHHHHHHHHhhHHHHHHHcchHHH
Q 000856          185 WRLALLSIAVIPGIAFAGGLYAYTLTGLTS-K-----------------SRESYANAGIIAEQAIAQVRTVYSYVGESKA  246 (1252)
Q Consensus       185 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~-~-----------------~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~  246 (1252)
                      |.+++++++++|+   +...+.++.+.... +                 ..+..++.+..+.|+++|+++||+|+.|+++
T Consensus       968 ~~l~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~ 1044 (1466)
T PTZ00265        968 PIVAAVLTGTYFI---FMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYF 1044 (1466)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHH
Confidence            9988776544333   33344443332111 1                 1233566788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          247 LNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLG  326 (1252)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  326 (1252)
                      .++|.+..++..+...+.....++..++..++..+..++++|+|++++.+|.+++|++++++++.+....++..+...+.
T Consensus      1045 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~ 1124 (1466)
T PTZ00265       1045 CNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKG 1124 (1466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988888888888888888888888888888999999999999999999988877665555556777888889


Q ss_pred             HHHHHHHHHHHHHHHHccCCCCCCCCCCCCc---CCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCC
Q 000856          327 AFSKGKAAGYKLMEIIKQKPSIIQDPTNGRC---LDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSG  403 (1252)
Q Consensus       327 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sG  403 (1252)
                      .+.+++.+++|+.++++.+++.+..+.....   .....+.|+|+||+|+||++++.++|+|+||+|++|+++|||||||
T Consensus      1125 ~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SG 1204 (1466)
T PTZ00265       1125 DSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETG 1204 (1466)
T ss_pred             HHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCC
Confidence            9999999999999999876543211111111   1223467999999999987655679999999999999999999999


Q ss_pred             CcHHHHHHHHhcccCC------------------------------------------------------CCcEEEECCc
Q 000856          404 SGKSTVVSLIERFYDP------------------------------------------------------NAGHVLLDNV  429 (1252)
Q Consensus       404 sGKSTll~~l~g~~~~------------------------------------------------------~~G~i~~~g~  429 (1252)
                      ||||||+++|+|+|+|                                                      ++|+|++||+
T Consensus      1205 sGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~ 1284 (1466)
T PTZ00265       1205 SGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGV 1284 (1466)
T ss_pred             CCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCE
Confidence            9999999999999999                                                      6999999999


Q ss_pred             cccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHH
Q 000856          430 DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK  509 (1252)
Q Consensus       430 ~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqk  509 (1252)
                      |+++++.+++|++|+||+|+|.||++||+|||.+|.+++++++++++++.+++++++..+|+|+||.+|++|.+||||||
T Consensus      1285 di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQk 1364 (1466)
T PTZ00265       1285 DICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQK 1364 (1466)
T ss_pred             EHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHH
Confidence            99999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhccCEEEEEeC----CEEE-Ee
Q 000856          510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQ----GQVV-ET  582 (1252)
Q Consensus       510 qRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~----G~i~-~~  582 (1252)
                      |||||||||+++|+|||||||||+||+++++.+++.|.++.  +++|+|+||||+++++.||+|+||++    |+++ ++
T Consensus      1365 QRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~ 1444 (1466)
T PTZ00265       1365 QRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAH 1444 (1466)
T ss_pred             HHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEe
Confidence            99999999999999999999999999999999999999984  68999999999999999999999999    9955 89


Q ss_pred             cChHHHHh-cccchHHHHHHH
Q 000856          583 GTHEELIA-KAGAYASLIRFQ  602 (1252)
Q Consensus       583 g~~~~l~~-~~~~~~~~~~~~  602 (1252)
                      |+|+||++ ++|.|+++++.+
T Consensus      1445 Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265       1445 GTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred             cCHHHHHhcCCChHHHHHhhc
Confidence            99999998 589999988654

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=1.4e-80  Score=786.73  Aligned_cols=565  Identities=33%  Similarity=0.516  Sum_probs=493.4

Q ss_pred             CchHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000856           23 SLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSY  102 (1252)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (1252)
                      ...+++++++.++++ ..++.++++.++..+.....+++.+.++|.+.... +..    .+....++++++.++..++.+
T Consensus       146 ~~~~~~l~~~~~~~~-~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~  219 (711)
T TIGR00958       146 ADLLFRLLGLSGRDW-PWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDK-GPP----ALASAIFFMCLLSIASSVSAG  219 (711)
T ss_pred             hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            345778888876654 44555666666666666566667899999875332 111    222233344455666777888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          103 AEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFV  182 (1252)
Q Consensus       103 ~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~  182 (1252)
                      ++.++..+.+.++..++|.+++++++++|+++|++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++.
T Consensus       220 l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~-~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~  298 (711)
T TIGR00958       220 LRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDEN-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLW  298 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999865 8999999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Q 000856          183 SAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGY  262 (1252)
Q Consensus       183 ~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~  262 (1252)
                      ++|.+++++++.+|+..++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|++..++..+...
T Consensus       299 ~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~  378 (711)
T TIGR00958       299 LSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNK  378 (711)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          263 KAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEII  342 (1252)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l  342 (1252)
                      +.....+....+..++..+..++++++|++++.+|.+++|.+++++.+......++..+...+..++++..+.+|+.+++
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l  458 (711)
T TIGR00958       379 RKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYL  458 (711)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77666666555555666666677788999999999999999999888888888899999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 000856          343 KQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG  422 (1252)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G  422 (1252)
                      +.+++.+...  ...+.+..+.|+++||+|+||++++.++|+|+||+|+|||+++||||||||||||+++|+|+|+|++|
T Consensus       459 ~~~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G  536 (711)
T TIGR00958       459 DRKPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG  536 (711)
T ss_pred             CCCCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence            8765532211  11122234679999999999865556799999999999999999999999999999999999999999


Q ss_pred             EEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCC
Q 000856          423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV  502 (1252)
Q Consensus       423 ~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~  502 (1252)
                      +|.+||+|+++++.+++|++|+||+|+|++|++||+|||.+|.++.+++++.++++.++++++++.+|+|+||.+|++|.
T Consensus       537 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~  616 (711)
T TIGR00958       537 QVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGS  616 (711)
T ss_pred             EEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCC
Confidence            99999999999999999999999999999999999999999988888999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEe
Q 000856          503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET  582 (1252)
Q Consensus       503 ~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~  582 (1252)
                      +||||||||++||||++++|+|+|||||||+||+++++.+.+  ....+++|+|+||||++.+..||+|++|++|+|+++
T Consensus       617 ~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~  694 (711)
T TIGR00958       617 QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEM  694 (711)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence            999999999999999999999999999999999999999998  233468999999999999999999999999999999


Q ss_pred             cChHHHHhcccchHHH
Q 000856          583 GTHEELIAKAGAYASL  598 (1252)
Q Consensus       583 g~~~~l~~~~~~~~~~  598 (1252)
                      |+|+|++++++.|+++
T Consensus       695 Gt~~eL~~~~~~y~~l  710 (711)
T TIGR00958       695 GTHKQLMEDQGCYKHL  710 (711)
T ss_pred             eCHHHHHhCCCchHhc
Confidence            9999999998888764

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=1.9e-80  Score=775.73  Aligned_cols=567  Identities=30%  Similarity=0.474  Sum_probs=493.4

Q ss_pred             HHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          674 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFS  753 (1252)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  753 (1252)
                      +.++.+.++.++.++..++..++..+.....++++..+++.......   ......+...++++.++..++.+++.++..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~   90 (582)
T PRK11176         14 RRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD---RSVLKWMPLVVIGLMILRGITSFISSYCIS   90 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444455555555555555444545556666666655442211   111112223344455666677778888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          754 IMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVS  833 (1252)
Q Consensus       754 ~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  833 (1252)
                      +.+.+....+|..+++++++.|.++|+  +.+.|++++|+++|++.+...+...+..++..++.++++++++++++|+++
T Consensus        91 ~~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  168 (582)
T PRK11176         91 WVSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS  168 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999996  478999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000856          834 LLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA  913 (1252)
Q Consensus       834 l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  913 (1252)
                      +++++++|+.+++.+...+..++..++..+...+....+.|.++|+++||+++.++.+.+++.+..++..+...+.....
T Consensus       169 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (582)
T PRK11176        169 LILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSAS  248 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999989888888888888888888888889999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000856          914 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRI  993 (1252)
Q Consensus       914 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~  993 (1252)
                      .....+..++..+...+++++|.+++..|.+++|++++++.+......|+..+...+..+.....+.+|+.+.++.+++.
T Consensus       249 ~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~  328 (582)
T PRK11176        249 SISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEK  328 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence            88888888888888888899999999999999999999999999999999999999999999999999999998754432


Q ss_pred             CCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 000856          994 DPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073 (1252)
Q Consensus       994 ~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG 1073 (1252)
                      +...   ...++..+.|+|+||+|+|++. ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus       329 ~~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g  404 (582)
T PRK11176        329 DEGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG  404 (582)
T ss_pred             CCCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECC
Confidence            2111   1112334679999999999743 35799999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCC-CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 000856         1074 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEG-ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 1152 (1252)
Q Consensus      1074 ~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~-~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgG 1152 (1252)
                      +|+++++.+++|++|+||||||++|+|||||||.++.++ .+|++++++++.++++++++++|+|+||++||+|.+||||
T Consensus       405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG  484 (582)
T PRK11176        405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG  484 (582)
T ss_pred             EEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence            999999999999999999999999999999999998654 7999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhh
Q 000856         1153 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 1232 (1252)
Q Consensus      1153 QrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~e 1232 (1252)
                      |||||+|||||+++|+|||||||||+||++||+.+.+.|.+..+++|+|+||||+++++.||+|++|++|+|+|.|+|++
T Consensus       485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~  564 (582)
T PRK11176        485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAE  564 (582)
T ss_pred             HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHhhh
Q 000856         1233 LVSRPDGAYSRLLQLQHH 1250 (1252)
Q Consensus      1233 Ll~~~~g~y~~l~~~q~~ 1250 (1252)
                      |+++ ++.|++|+..|.+
T Consensus       565 l~~~-~~~y~~l~~~~~~  581 (582)
T PRK11176        565 LLAQ-NGVYAQLHKMQFG  581 (582)
T ss_pred             HHhC-CChHHHHHHHHhc
Confidence            9987 7899999998764

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=1.5e-80  Score=789.27  Aligned_cols=552  Identities=26%  Similarity=0.405  Sum_probs=488.8

Q ss_pred             HHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          676 LLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIM  755 (1252)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  755 (1252)
                      ++.+..+.++.+...++.+++..++....++++..+++........   .....+...++.+.++..++.+++.++..+.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (694)
T TIGR03375       138 FWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAF---ETLWVLAIGVALAIVFDFVLKTLRSYFLDVA  214 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445555566666666666777777777788777765432211   1112233334444555667788889999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          756 GENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLL  835 (1252)
Q Consensus       756 ~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~  835 (1252)
                      +.++..+++.++++|++++|++| +  ++++|++++|+ +|++.+++.+...+...+..++.++++++++++++|+++++
T Consensus       215 ~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li  290 (694)
T TIGR03375       215 GKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV  290 (694)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            99999999999999999999998 4  46899999999 89999999999988888888888888888899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000856          836 ILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGI  915 (1252)
Q Consensus       836 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  915 (1252)
                      +++.+|+.+++.++..+..++..++..+..++..+.+.|+++|+++||+|+.++.+.++|.+..++..+...+.......
T Consensus       291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (694)
T TIGR03375       291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL  370 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888888888888899999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000856          916 LFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDP  995 (1252)
Q Consensus       916 ~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~  995 (1252)
                      ...+...+..+..++++++|++++..|.+++|.++++..+......|+..+...+.++.....+.+|+.++++.+++.++
T Consensus       371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~  450 (694)
T TIGR03375       371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE  450 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            88888888888889999999999999999999999999999999999999999999999999999999999987654322


Q ss_pred             CCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc
Q 000856          996 DDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD 1075 (1252)
Q Consensus       996 ~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~d 1075 (1252)
                      ... .....+..+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|
T Consensus       451 ~~~-~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~  528 (694)
T TIGR03375       451 GTR-FLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD  528 (694)
T ss_pred             CCC-CCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence            111 11112345689999999999743 3469999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 000856         1076 IRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 1155 (1252)
Q Consensus      1076 i~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1155 (1252)
                      +++++++++|++++||||||++|+|||||||.++++++++++++++++.++++++++++|+||||.+||+|.+|||||||
T Consensus       529 l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ  608 (694)
T TIGR03375       529 IRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ  608 (694)
T ss_pred             hhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence            99999999999999999999999999999999998889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhc
Q 000856         1156 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1156 rlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~ 1235 (1252)
                      ||+||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|+|+||++
T Consensus       609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~  688 (694)
T TIGR03375       609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE  688 (694)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence            99999999999999999999999999999999999999888999999999999999999999999999999999999987


Q ss_pred             C
Q 000856         1236 R 1236 (1252)
Q Consensus      1236 ~ 1236 (1252)
                      +
T Consensus       689 ~  689 (694)
T TIGR03375       689 A  689 (694)
T ss_pred             H
Confidence            5

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=6.7e-80  Score=770.86  Aligned_cols=567  Identities=23%  Similarity=0.346  Sum_probs=480.2

Q ss_pred             HHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          672 YFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF  751 (1252)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (1252)
                      .+++++.+..+.+++++..+++.++..++....++++..+++......+... .....+.++++++.++..++.+.+.++
T Consensus        10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (592)
T PRK10790         10 TLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQSLL   88 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555666667777777777777777788888888876543221110 011112223444444556667778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          752 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR  831 (1252)
Q Consensus       752 ~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  831 (1252)
                      ....+.+...++|.++++++++.|.+||+.  .++|++++|+++|++.+++.+...+..++..++.+++.++++++++|+
T Consensus        89 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (592)
T PRK10790         89 FNRAAVGVVQQLRTDVMDAALRQPLSAFDT--QPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWR  166 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999974  789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 000856          832 VSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL  911 (1252)
Q Consensus       832 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~  911 (1252)
                      +++++++++|+.++......+..+...++..+...+...++.|.++|+++||+|+.++.+.+++.+..++..+...+...
T Consensus       167 l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (592)
T PRK10790        167 MALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLR  246 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998888888877777777777777777777888889999999999999999999999999999988887777666665


Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000856          912 TAGIL-FGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRS  990 (1252)
Q Consensus       912 ~~~~~-~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~  990 (1252)
                      ..... ..+..++......++.+++.. +..|.++.|.++++..+......|+..+...+.++.+...+++|+.++++.+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~  325 (592)
T PRK10790        247 LDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGP  325 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            55433 233333333332333333333 5789999999999999999999999999999999999999999999998765


Q ss_pred             CCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEE
Q 000856          991 TRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 1070 (1252)
Q Consensus       991 ~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~ 1070 (1252)
                      ++....    ...+...++|+|+||+|+|++  ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus       326 ~~~~~~----~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~  399 (592)
T PRK10790        326 RQQYGN----DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR  399 (592)
T ss_pred             CccCCC----CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence            432111    111223467999999999974  24699999999999999999999999999999999999999999999


Q ss_pred             ECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 000856         1071 IDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 1150 (1252)
Q Consensus      1071 idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LS 1150 (1252)
                      +||+|+++++++.+|++|+||||||.+|+|||||||++++ +++|++++++++.+|++++++++|+||||.+||+|.+||
T Consensus       400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LS  478 (592)
T PRK10790        400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS  478 (592)
T ss_pred             ECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCC
Confidence            9999999999999999999999999999999999999987 689999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 000856         1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 1230 (1252)
Q Consensus      1151 gGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~ 1230 (1252)
                      |||||||+|||||+++|+|||||||||+||++|++.|++.|++..++||+|+||||++++..||+|++|++|+++|.|+|
T Consensus       479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~  558 (592)
T PRK10790        479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTH  558 (592)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCH
Confidence            99999999999999999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             hhhhcCCCchhHHHHHHhhh
Q 000856         1231 SELVSRPDGAYSRLLQLQHH 1250 (1252)
Q Consensus      1231 ~eLl~~~~g~y~~l~~~q~~ 1250 (1252)
                      +||+++ ++.|+++++.|..
T Consensus       559 ~~L~~~-~~~y~~l~~~~~~  577 (592)
T PRK10790        559 QQLLAA-QGRYWQMYQLQLA  577 (592)
T ss_pred             HHHHhC-CCHHHHHHHHHhh
Confidence            999987 7999999998754

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=1.7e-79  Score=762.50  Aligned_cols=562  Identities=34%  Similarity=0.560  Sum_probs=497.5

Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           26 FFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEI  105 (1252)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (1252)
                      +++++.+.+  .+ .++.+.++.++...+....+.+++.++|.+...   .    .....+...++++.++..++.+...
T Consensus         4 ~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~----~~~~~~~~~~~~~~~~~~v~~~~~~   73 (567)
T COG1132           4 LRRLLKYLK--YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD---L----GELLELLLLLLLLALLGGVLRALQS   73 (567)
T ss_pred             HHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---H----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555544  34 455566666665566555666778888876611   1    1233344555556667778888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000856          106 ACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAW  185 (1252)
Q Consensus       106 ~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  185 (1252)
                      ++..+.+.++..++|.+++++++++|+++|++. ++|++++|+++|++.++..+......+..++.++++.+++++..+|
T Consensus        74 ~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (567)
T COG1132          74 YLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKA-KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSW  152 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcC-CcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhH
Confidence            888888999999999999999999999999965 7899999999999999999999866666678888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH
Q 000856          186 RLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAG  265 (1252)
Q Consensus       186 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  265 (1252)
                      .+++++++..|++.+...++.++.++...+.++..++.++.+.|.++|+++||+|+.++.+.+++.+..++..+...+..
T Consensus       153 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~  232 (567)
T COG1132         153 RLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRAS  232 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988889999999999999999999999999999999999999999999888888887877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000856          266 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQK  345 (1252)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~  345 (1252)
                      ...+...++...+..+..++++++|++.+..+.++.|.+.+++.+......|+..+...+..++.+..+.+|++++++.+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~  312 (567)
T COG1132         233 RLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEE  312 (567)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            88777777888888888889999999999999999999888888888888899999999999999999999999999986


Q ss_pred             CCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE
Q 000856          346 PSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL  425 (1252)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~  425 (1252)
                      ++....+. .  .....+.|+++||+|+|++  +.++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|+
T Consensus       313 ~~~~~~~~-~--~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~  387 (567)
T COG1132         313 PEVEDPPD-P--LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL  387 (567)
T ss_pred             ccccCCCC-C--CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE
Confidence            65322111 1  2223467999999999984  34699999999999999999999999999999999999999999999


Q ss_pred             ECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCC
Q 000856          426 LDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS  505 (1252)
Q Consensus       426 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LS  505 (1252)
                      +||+|+++++.+++|++|+||||+|+||++||+|||.+|+|++++++++++++.+++++++..+|+|+||.+||+|.+||
T Consensus       388 idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LS  467 (567)
T COG1132         388 IDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLS  467 (567)
T ss_pred             ECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecCh
Q 000856          506 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTH  585 (1252)
Q Consensus       506 gGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~  585 (1252)
                      ||||||++||||++++|+|||||||||+||+++++.+++.+.++.+++|+|+|+||++++.+||+|+||++|+++|.|+|
T Consensus       468 gGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h  547 (567)
T COG1132         468 GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTH  547 (567)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCH
Confidence            99999999999999999999999999999999999999999988888999999999999999999999999999999999


Q ss_pred             HHHHhcccchHHHHHHHH
Q 000856          586 EELIAKAGAYASLIRFQE  603 (1252)
Q Consensus       586 ~~l~~~~~~~~~~~~~~~  603 (1252)
                      +||++++|.|+++++.+.
T Consensus       548 ~eLl~~~g~y~~l~~~~~  565 (567)
T COG1132         548 EELLAKGGLYARLYQAQG  565 (567)
T ss_pred             HHHHHcCCHHHHHHHHhh
Confidence            999999999999998764

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.8e-83  Score=697.00  Aligned_cols=502  Identities=29%  Similarity=0.423  Sum_probs=431.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          743 VAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSF  822 (1252)
Q Consensus       743 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~  822 (1252)
                      ++.-++.++......-..+++.-++|+|+..+++.|+-  ++..|+++.-..+..+.+. ++.....++...++.+.+++
T Consensus       274 ~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL--~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~  350 (790)
T KOG0056|consen  274 FLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHL--NRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM  350 (790)
T ss_pred             chhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeee--cccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh
Confidence            44445667777778888999999999999999999985  4778888887777666655 44444444444455554444


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHh
Q 000856          823 IVA-FIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRV  901 (1252)
Q Consensus       823 i~~-~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~  901 (1252)
                      +.. ..++||.+++++++..++........-...++.|+......+....-.+++-+.+|+|.|++++...+++.+...+
T Consensus       351 vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~  430 (790)
T KOG0056|consen  351 VYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILK  430 (790)
T ss_pred             hhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHH
Confidence            433 3468999998888877766555444333334444445555556666678999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          902 PQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVG  981 (1252)
Q Consensus       902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  981 (1252)
                      +++..++....-..+......+..+...+.-.+.++++..+..++|+++.+..++.....|+.....+...+++....++
T Consensus       431 Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmE  510 (790)
T KOG0056|consen  431 YQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDME  510 (790)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHH
Confidence            99998888777767766666666665555555566677788999999999999999999999999999999999999999


Q ss_pred             HHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcc
Q 000856          982 SVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus       982 ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl 1061 (1252)
                      ++++++.++++.. +.|..+|....+|.|+|+||+|.|.  |++|+|+||||+++||+.+|+|||||+||||++++|+||
T Consensus       511 nmfdllkee~eVv-d~P~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf  587 (790)
T KOG0056|consen  511 NMFDLLKEEPEVV-DLPGAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF  587 (790)
T ss_pred             HHHHHhhcCchhh-cCCCCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHH
Confidence            9999998766543 2233333345678999999999995  467899999999999999999999999999999999999


Q ss_pred             CCCCCceEEECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCc
Q 000856         1062 YDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTP 1141 (1252)
Q Consensus      1062 ~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~ 1141 (1252)
                      ||.++|.|+|||+||+++..++||++||+||||..||++||.+||.|++|.+++||+.+|++.+++||.|.++|+||+|.
T Consensus       588 fdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~  667 (790)
T KOG0056|consen  588 FDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTR  667 (790)
T ss_pred             hhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeC
Q 000856         1142 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 1221 (1252)
Q Consensus      1142 vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~ 1221 (1252)
                      |||+|-.||||||||+||||+++++|.|++||||||+||..||+.||.++.+.+.++|.|+||||++|+.++|.|+|+++
T Consensus       668 VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~  747 (790)
T KOG0056|consen  668 VGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISN  747 (790)
T ss_pred             hhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEecChhhhhcCCCchhHHHHHHhhh
Q 000856         1222 GRIVEQGSHSELVSRPDGAYSRLLQLQHH 1250 (1252)
Q Consensus      1222 G~Ive~G~~~eLl~~~~g~y~~l~~~q~~ 1250 (1252)
                      |+|+|.|+|+||+++.+|.|++||+.|+.
T Consensus       748 G~IvErG~HeeLl~rdgG~Ya~MWq~qqa  776 (790)
T KOG0056|consen  748 GRIVERGRHEELLKRDGGAYADMWQAQQA  776 (790)
T ss_pred             CeEeecCcHHHHHhccCCcHHHHHHHHHh
Confidence            99999999999999989999999987754

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=1.8e-79  Score=778.49  Aligned_cols=566  Identities=27%  Similarity=0.413  Sum_probs=499.8

Q ss_pred             HHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          674 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFS  753 (1252)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  753 (1252)
                      .++++..++.+..+...++.+++..++....++++..+++.......   ......+...++++.++..++.+++.++..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~  204 (694)
T TIGR01846       128 SWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG---LSTLSVLALAMLAVAIFEPALGGLRTYLFA  204 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444455555566666666666667777778888776643211   112223344455555667777888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          754 IMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVS  833 (1252)
Q Consensus       754 ~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  833 (1252)
                      ..+.++..++|.+++++++++|++||+  +++.|++++|+ +|++.+++++...+...+..++.+++.++++++++|+++
T Consensus       205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~  281 (694)
T TIGR01846       205 HLTSRIDVELGARLYRHLLGLPLGYFE--SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLT  281 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999997  48899999999 799999999988888888777777777888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000856          834 LLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA  913 (1252)
Q Consensus       834 l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  913 (1252)
                      +++++++|+++++.++..+..++..++..+..++..+.+.|+++|+++||++|.++.+.++|.+..++..+...+..+..
T Consensus       282 li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  361 (694)
T TIGR01846       282 GVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLG  361 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888888888888788888888999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000856          914 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRI  993 (1252)
Q Consensus       914 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~  993 (1252)
                      .....+..++..+..++++|+|.+++..|.++.|.++++..+......|+..+.....++..+..+.+|+.++++.+++.
T Consensus       362 ~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~  441 (694)
T TIGR01846       362 NIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP  441 (694)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            88888888888888999999999999999999999999999999999999999999999999999999999999866543


Q ss_pred             CCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 000856          994 DPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073 (1252)
Q Consensus       994 ~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG 1073 (1252)
                      +...  ........+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus       442 ~~~~--~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg  518 (694)
T TIGR01846       442 RSAG--LAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG  518 (694)
T ss_pred             cCCC--CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence            2211  11112235789999999999743 34699999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 000856         1074 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 1153 (1252)
Q Consensus      1074 ~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQ 1153 (1252)
                      +|+++++.+++|++++||||||.+|+|||||||.++.+++++++++++++.+++++++.++|+||||.++++|.+|||||
T Consensus       519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq  598 (694)
T TIGR01846       519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ  598 (694)
T ss_pred             EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence            99999999999999999999999999999999999888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhh
Q 000856         1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1154 rQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      |||++||||++++|+|||||||||+||+++|+.+.+.|++..+++|+|+||||++++..||+|++|++|+|+|.|+|++|
T Consensus       599 ~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l  678 (694)
T TIGR01846       599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEEL  678 (694)
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence            99999999999999999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             hcCCCchhHHHHHHhh
Q 000856         1234 VSRPDGAYSRLLQLQH 1249 (1252)
Q Consensus      1234 l~~~~g~y~~l~~~q~ 1249 (1252)
                      +++ +|.|++|++.|.
T Consensus       679 ~~~-~~~y~~l~~~~~  693 (694)
T TIGR01846       679 LAL-QGLYARLWQQQS  693 (694)
T ss_pred             HHc-CChHHHHHHhhc
Confidence            997 899999998764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.6e-79  Score=774.65  Aligned_cols=564  Identities=27%  Similarity=0.307  Sum_probs=490.5

Q ss_pred             chHHHHHHh-hchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000856           24 LPFFQLFSF-ADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSY  102 (1252)
Q Consensus        24 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (1252)
                      ..+++++++ .+++++ .++..++++++..++....+++++.++|.+.... +.    ..+..+++.++++.++..++.+
T Consensus       121 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~-~~----~~l~~~~~~~~~~~~~~~~~~~  194 (686)
T TIGR03797       121 LGLRDLLRFALRGARR-DLLAILAMGLLGTLLGMLVPIATGILIGTAIPDA-DR----SLLVQIALALLAAAVGAAAFQL  194 (686)
T ss_pred             ccHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-Ch----hHHHHHHHHHHHHHHHHHHHHH
Confidence            446677766 344433 3334444444444444444456788888876432 11    2233344555556667788899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          103 AEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFV  182 (1252)
Q Consensus       103 ~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~  182 (1252)
                      ++.+.....+.++..++|.+++++++++|+.||++. ++|++++|++ |++.+++++...+...+..+..+++.++++++
T Consensus       195 ~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~  272 (686)
T TIGR03797       195 AQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQY-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFY  272 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999865 8999999997 89999999998888888888778888889999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHH
Q 000856          183 SAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGY  262 (1252)
Q Consensus       183 ~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~  262 (1252)
                      ++|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+++.|+++.++|++..++..+...
T Consensus       273 ~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~  352 (686)
T TIGR03797       273 YSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLEL  352 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999889988888889999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          263 KAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEII  342 (1252)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l  342 (1252)
                      +..+.......+..++..+..++++++|++++.+|.+|.|.++++..+......|+..+...+..+++++.+.+|+.+++
T Consensus       353 ~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l  432 (686)
T TIGR03797       353 SAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPIL  432 (686)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888877777777777777888899999999999999999998887777777899999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 000856          343 KQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG  422 (1252)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G  422 (1252)
                      +.+++.+...   .......+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+|+|+|+|+|++|
T Consensus       433 ~~~~e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G  508 (686)
T TIGR03797       433 EALPEVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG  508 (686)
T ss_pred             cCCcccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence            8765432111   1112234579999999999743 35699999999999999999999999999999999999999999


Q ss_pred             EEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCC
Q 000856          423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV  502 (1252)
Q Consensus       423 ~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~  502 (1252)
                      +|.+||+|+++++.+++|++|+||+|+|++|++||+|||.++.| .++++++++++.++++++++.+|+|++|.+|++|.
T Consensus       509 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~  587 (686)
T TIGR03797       509 SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGG  587 (686)
T ss_pred             EEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCC
Confidence            99999999999999999999999999999999999999999988 88999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEe
Q 000856          503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET  582 (1252)
Q Consensus       503 ~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~  582 (1252)
                      +||||||||++||||++++|+|||||||||+||+++++.+.+.|+++  ++|+|+||||++.+..||+|++|++|+++++
T Consensus       588 ~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~  665 (686)
T TIGR03797       588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ  665 (686)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEE
Confidence            99999999999999999999999999999999999999999999887  6899999999999999999999999999999


Q ss_pred             cChHHHHhcccchHHHHHHH
Q 000856          583 GTHEELIAKAGAYASLIRFQ  602 (1252)
Q Consensus       583 g~~~~l~~~~~~~~~~~~~~  602 (1252)
                      |+|+|++++++.|+++++.|
T Consensus       666 G~~~~Ll~~~~~y~~l~~~q  685 (686)
T TIGR03797       666 GTYDELMAREGLFAQLARRQ  685 (686)
T ss_pred             CCHHHHHhCCcHHHHHHHhc
Confidence            99999999999999987643

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.4e-80  Score=694.77  Aligned_cols=544  Identities=27%  Similarity=0.417  Sum_probs=468.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhccCC-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 000856          698 GFIGPTFAIVMACMIEVFYYRNP-ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEV  776 (1252)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~  776 (1252)
                      .+.....+.++...++..-..+. +.........+..|..+.+...++..++...+.+..+++.+..-.+.|.+.++++.
T Consensus        43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~  122 (591)
T KOG0057|consen   43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL  122 (591)
T ss_pred             hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            34445556666666665532211 11112223456677777788888889999999999999999999999999999999


Q ss_pred             CcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000856          777 GWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVA-FIVEWRVSLLILGTYPLLVLANFAQQLSLK  855 (1252)
Q Consensus       777 ~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~  855 (1252)
                      +||-+  .++|.+.+.+.+....+...+...+..++..++.+......+ .-+.+..+++.+..+..+..+.+....+..
T Consensus       123 ~~~~~--~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn  200 (591)
T KOG0057|consen  123 SFFLS--RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRN  200 (591)
T ss_pred             HhhcC--CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHH
Confidence            99964  788999999999998988888888877777776665554333 334566666666666666666666666666


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          856 GFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYG  935 (1252)
Q Consensus       856 ~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  935 (1252)
                      ++.++...+.......+.|++.+.++||+||.|++..+++...+.++.+...+.+...+++......+..+..+.+.+++
T Consensus       201 ~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~  280 (591)
T KOG0057|consen  201 RFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLG  280 (591)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66777788888899999999999999999999999999999999999999999888888888888888888888888889


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeE
Q 000856          936 VHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHV 1015 (1252)
Q Consensus       936 ~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nv 1015 (1252)
                      ..-+..+.+++++++.+.........|+..+.....+..++...+..++...+........   +.+....++.|+|+||
T Consensus       281 ~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~---~~~i~~~~~~I~F~dV  357 (591)
T KOG0057|consen  281 SNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA---ALPIELFGGSIEFDDV  357 (591)
T ss_pred             hhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc---cCCcccCCCcEEEEee
Confidence            8888899999999999999999999999999998888888888888777665432221111   1223345678999999


Q ss_pred             EEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEEEcccc
Q 000856         1016 DFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP 1095 (1252)
Q Consensus      1016 sf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~ 1095 (1252)
                      +|.|+  |++++|+++||+|++||||||||+|||||||++++|+||++ ++|+|+|||+||++++++.+|+.||+||||.
T Consensus       358 ~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~  434 (591)
T KOG0057|consen  358 HFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDS  434 (591)
T ss_pred             EEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcc
Confidence            99996  34569999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             ccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEecc
Q 000856         1096 ALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 1175 (1252)
Q Consensus      1096 ~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEp 1175 (1252)
                      .||++||.+||.||++.+++||+.++|+++++||.+.++|+||+|.|||+|..||||||||++||||++++|+|+++|||
T Consensus       435 ~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa  514 (591)
T KOG0057|consen  435 VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA  514 (591)
T ss_pred             cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcCCCchhHHHHHHhhh
Q 000856         1176 TSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHH 1250 (1252)
Q Consensus      1176 TS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~l~~~q~~ 1250 (1252)
                      ||+||.+||+.|.+.+.+...++|+|+|+||++++++||+|+++|+|+++|.|+|+||++ +++.|+++|..|..
T Consensus       515 TS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~~  588 (591)
T KOG0057|consen  515 TSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQTS  588 (591)
T ss_pred             ccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhccccc
Confidence            999999999999999999889999999999999999999999999999999999999999 59999999998854

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.4e-79  Score=690.76  Aligned_cols=504  Identities=23%  Similarity=0.341  Sum_probs=437.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHH
Q 000856          736 GAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNM  815 (1252)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~  815 (1252)
                      ++++...+..+...+..+....++...+|.++|+++...+..-..  ...+|+++||+..|++.+|+.+-..+.+.+..+
T Consensus        66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~  143 (573)
T COG4987          66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVAL  143 (573)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHH
Confidence            345666677777778888888899999999999999988777664  478999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHH
Q 000856          816 TSLLTSFIVAFIVEWRVSLLILGTY-PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSL  894 (1252)
Q Consensus       816 ~~~~~~~i~~~~~~~~l~l~~l~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~  894 (1252)
                      +...+..+.+.+++|.+++.+...+ .+.+++.+...++-++..++.....+.+.+++.|.+.|....+.||+++++.+.
T Consensus       144 ~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~  223 (573)
T COG4987         144 VLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTA  223 (573)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence            9888888888888998887766555 445556667777888888888999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000856          895 FCHELRVPQSQTLRRSLTAGILFGISQFALHASEA-LILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETV-SLAPE  972 (1252)
Q Consensus       895 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  972 (1252)
                      +.+..+.+.+...+......+......++..+..+ .++|.+ ..+..|..+......+.+.....+.++..+. ....+
T Consensus       224 l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~  302 (573)
T COG4987         224 LEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQH  302 (573)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence            99999998888888888888877777777766666 334444 3445565554434444444444455555555 66677


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChH
Q 000856          973 IIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKS 1052 (1252)
Q Consensus       973 ~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKS 1052 (1252)
                      ..+...|+.|+.+..+++++...+.+   +....+..++++||||+|++. ..++|+|+||++++||||||+||||||||
T Consensus       303 lgq~~~Sa~Rl~~i~~q~~e~~~~~~---~~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKS  378 (573)
T COG4987         303 LGQVIASARRLNDILDQKPEVTFPDE---QTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKS  378 (573)
T ss_pred             hhHHHHHHHHHhhhccCCcccCCCcc---ccCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHH
Confidence            88888999999999887665443211   111112279999999999865 45799999999999999999999999999


Q ss_pred             HHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHh
Q 000856         1053 SVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVS 1132 (1252)
Q Consensus      1053 TLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~ 1132 (1252)
                      ||+++|.|.|+|++|+|.++|++++.++.+++|+.|++++|.+++|++|+|+||.+++|++||||+|++++++|++++++
T Consensus       379 TllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~  458 (573)
T COG4987         379 TLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLE  458 (573)
T ss_pred             HHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc
Q 000856         1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG 1212 (1252)
Q Consensus      1133 ~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~ 1212 (1252)
                      +.|+||||++||+|.+|||||||||+|||+||++++++||||||.+||+.||++|++.|.+..+|+|+|+||||+..++.
T Consensus       459 ~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~  538 (573)
T COG4987         459 SAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER  538 (573)
T ss_pred             hChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCEEEEEeCCEEEEecChhhhhcCCCchhHHHHHH
Q 000856         1213 VDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247 (1252)
Q Consensus      1213 ~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~l~~~ 1247 (1252)
                      ||||+|||+|+++|+|+|.+|+++ +|.|+++++.
T Consensus       539 ~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q~  572 (573)
T COG4987         539 MDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQL  572 (573)
T ss_pred             cCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhcc
Confidence            999999999999999999999996 9999999753

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=6.6e-79  Score=775.86  Aligned_cols=565  Identities=25%  Similarity=0.353  Sum_probs=490.9

Q ss_pred             chHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           24 LPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYA  103 (1252)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (1252)
                      ..+++++++.+++++. ++..++++++..++....+++++.++|.+.... ..    ..+..+++.++++.++..++.++
T Consensus       142 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~-~~----~~l~~~~~~~~~~~~~~~~~~~~  215 (708)
T TIGR01193       142 NSLLKFIPLITRQKKL-IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHK-MM----GTLGIISIGLIIAYIIQQILSYI  215 (708)
T ss_pred             chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-Ch----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777777665553 334444444444444444556788898875432 11    12233344445556667788899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          104 EIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVS  183 (1252)
Q Consensus       104 ~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~  183 (1252)
                      +.++..+.+.++..++|.+++++++++|+.+|++. ++|++++|++ |++.+++++...+...+..+..+++.+++++++
T Consensus       216 ~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  293 (708)
T TIGR01193       216 QIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQ  293 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999865 8999999997 999999999888888888888888888889999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 000856          184 AWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYK  263 (1252)
Q Consensus       184 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  263 (1252)
                      +|.+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||++|.|+.+.+++++...+..+...+
T Consensus       294 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  373 (708)
T TIGR01193       294 NMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFK  373 (708)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000856          264 AGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIK  343 (1252)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~  343 (1252)
                      ..+..+....+..++..+..++++++|++++.+|.+|+|.++++..+......|+..+...+..+++++.+.+|+.++++
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~  453 (708)
T TIGR01193       374 YQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYL  453 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            87777776666666666777788899999999999999999988887777788999999999999999999999999998


Q ss_pred             cCCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcE
Q 000856          344 QKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH  423 (1252)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~  423 (1252)
                      .+++.+... ......+..+.|+++||+|+|++  ++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+
T Consensus       454 ~~~e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~  530 (708)
T TIGR01193       454 VDSEFINKK-KRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGE  530 (708)
T ss_pred             CCCcccccc-cccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence            765432211 11112233467999999999973  346999999999999999999999999999999999999999999


Q ss_pred             EEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCC
Q 000856          424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV  502 (1252)
Q Consensus       424 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~  502 (1252)
                      |++||.|+++++.+++|++|+||||+|++|++||+|||.++ .++.+++++.++++.+++++++..+|+|++|.+|++|.
T Consensus       531 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~  610 (708)
T TIGR01193       531 ILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS  610 (708)
T ss_pred             EEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCC
Confidence            99999999999999999999999999999999999999998 57788999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEe
Q 000856          503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET  582 (1252)
Q Consensus       503 ~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~  582 (1252)
                      +||||||||++||||++++|+|||||||||+||+++++.+.+.|+++ +++|+|+||||++.+..||+|++|++|++++.
T Consensus       611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~  689 (708)
T TIGR01193       611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQ  689 (708)
T ss_pred             CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEE
Confidence            99999999999999999999999999999999999999999999886 68999999999999999999999999999999


Q ss_pred             cChHHHHhcccchHHHHH
Q 000856          583 GTHEELIAKAGAYASLIR  600 (1252)
Q Consensus       583 g~~~~l~~~~~~~~~~~~  600 (1252)
                      |+|+|++++++.|+++++
T Consensus       690 G~~~~L~~~~~~y~~l~~  707 (708)
T TIGR01193       690 GSHDELLDRNGFYASLIH  707 (708)
T ss_pred             CCHHHHHhcCCcHHHHhh
Confidence            999999999999988763

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=2.2e-78  Score=750.46  Aligned_cols=567  Identities=22%  Similarity=0.273  Sum_probs=482.1

Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           26 FFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEI  105 (1252)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (1252)
                      +++++++.+++++. ++++++++++..++....+++++.++|............. ........+++++++..++.|++.
T Consensus         4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   81 (574)
T PRK11160          4 LLPFLKLYKRHWFM-LSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSF-NYMLPAAGVRGAAIGRTAGRYGER   81 (574)
T ss_pred             hHHHHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH-HHHhHHHHHHHHHHHHHHHHHHHH
Confidence            45566776665443 4455666555555554555567888886432111000000 011112234445667788899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000856          106 ACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAW  185 (1252)
Q Consensus       106 ~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  185 (1252)
                      ++.+..+.++..++|.+++++++++|+.+|++. ++|++++|+++|++.+++++...++.++..++.+++.++++++++|
T Consensus        82 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (574)
T PRK11160         82 LVSHDATFRVLTHLRVFTFSKLLPLSPAGLARY-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDL  160 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccChHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999865 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHH
Q 000856          186 RLALLSIAVIPGIAF-AGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKA  264 (1252)
Q Consensus       186 ~l~l~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~  264 (1252)
                      ++++++++.+|++.+ +..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.+++++..++..+...+.
T Consensus       161 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~  240 (574)
T PRK11160        161 TLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQ  240 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence            999988888887665 4466778888888888999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000856          265 GMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSA-IVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIK  343 (1252)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~  343 (1252)
                      .+..+...++..++..+..++++++|++++ +|.++.|.+++++.+. .....++..+...+..++++..+.+|+.++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~  319 (574)
T PRK11160        241 ANLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITE  319 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888888777777777777777888898884 7888999877765443 33345666677778889999999999999998


Q ss_pred             cCCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcE
Q 000856          344 QKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH  423 (1252)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~  423 (1252)
                      .+++.+..+.  ....+..+.|+++||+|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus       320 ~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~  396 (574)
T PRK11160        320 QKPEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE  396 (574)
T ss_pred             CCCCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            7654321111  1111234579999999999753 246899999999999999999999999999999999999999999


Q ss_pred             EEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCC
Q 000856          424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQ  503 (1252)
Q Consensus       424 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~  503 (1252)
                      |.+||+|+++++.+.+|++|+||+|+|++|++||+|||.++.++.+++++.++++.++++++++. |+|+||.+|++|.+
T Consensus       397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~  475 (574)
T PRK11160        397 ILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQ  475 (574)
T ss_pred             EEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCC
Confidence            99999999999999999999999999999999999999999988899999999999999999999 99999999999999


Q ss_pred             CChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEec
Q 000856          504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETG  583 (1252)
Q Consensus       504 LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g  583 (1252)
                      ||||||||++||||++++|+++|||||||+||+++++.+.+.+.++.+++|+|+||||++++..||+|++|++|++++.|
T Consensus       476 LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g  555 (574)
T PRK11160        476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG  555 (574)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence            99999999999999999999999999999999999999999999988899999999999999999999999999999999


Q ss_pred             ChHHHHhcccchHHHHH
Q 000856          584 THEELIAKAGAYASLIR  600 (1252)
Q Consensus       584 ~~~~l~~~~~~~~~~~~  600 (1252)
                      +|+|+++++|.|+++++
T Consensus       556 ~~~~l~~~~g~y~~l~~  572 (574)
T PRK11160        556 THQELLAQQGRYYQLKQ  572 (574)
T ss_pred             CHHHHHhcCcHHHHHHh
Confidence            99999999999998875

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=1.6e-78  Score=773.53  Aligned_cols=563  Identities=25%  Similarity=0.341  Sum_probs=488.0

Q ss_pred             chHHHHHHhhchhhHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000856           24 LPFFQLFSFADKYDWC--LMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSS  101 (1252)
Q Consensus        24 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (1252)
                      ..+++++++.+++++.  .++++.++..+.+++.|+   +++.++|...... +.    ..+..+++.++++.++.+++.
T Consensus       140 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~---~~~~iid~v~~~~-~~----~~l~~~~~~~~~~~~~~~~~~  211 (710)
T TIGR03796       140 SLLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPA---FSQIFVDEILVQG-RQ----DWLRPLLLGMGLTALLQGVLT  211 (710)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhcC-Ch----hHHHHHHHHHHHHHHHHHHHH
Confidence            3466676666655432  222233333344455555   5778888765432 11    112233444445566677888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          102 YAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGF  181 (1252)
Q Consensus       102 ~~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~  181 (1252)
                      +++.++....+.++..++|.+++++++++|+++|++. ++|++++|+++| +.+++++...+...+..+..+++.+++++
T Consensus       212 ~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~  289 (710)
T TIGR03796       212 WLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQR-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLML  289 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999865 899999999988 78999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHH
Q 000856          182 VSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLG  261 (1252)
Q Consensus       182 ~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~  261 (1252)
                      +++|.+++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||++++|+.+.++|.+...+..+..
T Consensus       290 ~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~  369 (710)
T TIGR03796       290 LYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQ  369 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998889999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          262 YKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEI  341 (1252)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~  341 (1252)
                      .+..+...+...+..++..+..++++++|++++.+|.+++|.++++..+......|+..+...+..++++..+.+|+.++
T Consensus       370 ~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~i  449 (710)
T TIGR03796       370 QELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDV  449 (710)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887777777777777777778889999999999999999999888777777789999999999999999999999999


Q ss_pred             HccCCCCCCCCC---C-CCcC-CCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 000856          342 IKQKPSIIQDPT---N-GRCL-DEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       342 l~~~~~~~~~~~---~-~~~~-~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~  416 (1252)
                      ++.+++.+....   . .... ....+.|+++||+|+|++. ++++|+|+||+|++||++|||||||||||||+++|+|+
T Consensus       450 l~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl  528 (710)
T TIGR03796       450 LRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL  528 (710)
T ss_pred             HcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            987654321110   0 0111 2234679999999999853 35699999999999999999999999999999999999


Q ss_pred             cCCCCcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCcccc
Q 000856          417 YDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQ  496 (1252)
Q Consensus       417 ~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  496 (1252)
                      |+|++|+|.+||.|+++++.+++|++|+||||+|++|++||+|||.++.++.++++++++++.+++++++..+|+|++|.
T Consensus       529 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~  608 (710)
T TIGR03796       529 YQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAE  608 (710)
T ss_pred             CCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccce
Confidence            99999999999999999999999999999999999999999999999988889999999999999999999999999999


Q ss_pred             ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeC
Q 000856          497 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ  576 (1252)
Q Consensus       497 ~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~  576 (1252)
                      +|++|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+.+++  .++|+|+||||++.+..||+|++|++
T Consensus       609 i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~  686 (710)
T TIGR03796       609 LAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLER  686 (710)
T ss_pred             eccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeC
Confidence            9999999999999999999999999999999999999999999999999987  48999999999999999999999999


Q ss_pred             CEEEEecChHHHHhcccchHHHH
Q 000856          577 GQVVETGTHEELIAKAGAYASLI  599 (1252)
Q Consensus       577 G~i~~~g~~~~l~~~~~~~~~~~  599 (1252)
                      |++++.|+|+|++++++.|++++
T Consensus       687 G~i~~~G~~~~Ll~~~~~y~~l~  709 (710)
T TIGR03796       687 GKVVQRGTHEELWAVGGAYARLI  709 (710)
T ss_pred             CEEEEecCHHHHHHcCCcHHHHh
Confidence            99999999999999999998875

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=5.6e-78  Score=752.93  Aligned_cols=564  Identities=32%  Similarity=0.516  Sum_probs=503.5

Q ss_pred             HHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          676 LLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIM  755 (1252)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  755 (1252)
                      ++++.++.++.++++++..++.+++.+..++.+..+++.......   ......+..+++++.++..++.+++.++..+.
T Consensus         5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   81 (571)
T TIGR02203         5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWV   81 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455666677777777777777777777777765443221   11122234455666667777788889999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          756 GENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLL  835 (1252)
Q Consensus       756 ~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~  835 (1252)
                      +.++...+|..+++++++.|.++|++  .+.|++.+|+++|++.+++.+...+..++..++.++++++++++++|+++++
T Consensus        82 ~~~~~~~lr~~l~~~~~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i  159 (571)
T TIGR02203        82 SNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLI  159 (571)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHhCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            99999999999999999999999974  7899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000856          836 ILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGI  915 (1252)
Q Consensus       836 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  915 (1252)
                      +++..|+.+++.++..+..++..++..+...+..+.+.|.++|+++||+++.++.+.+++.+..++..+...+..+....
T Consensus       160 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (571)
T TIGR02203       160 VVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSI  239 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888888888888889999999999999999999999999999999999999999999988888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000856          916 LFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDP  995 (1252)
Q Consensus       916 ~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~  995 (1252)
                      ...+...+..+...+++++|.+++..|.++.|.++++..+......|+..+......+..+..+.+|+.++++.+++.+.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~  319 (571)
T TIGR02203       240 SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT  319 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            88888888888889999999999999999999999999999999999999999999999999999999999876544221


Q ss_pred             CCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc
Q 000856          996 DDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD 1075 (1252)
Q Consensus       996 ~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~d 1075 (1252)
                      ..   .+..+..+.|+++||+|+|++. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||+|
T Consensus       320 ~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~  395 (571)
T TIGR02203       320 GT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD  395 (571)
T ss_pred             CC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEe
Confidence            11   1111234679999999999753 3479999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhcccEEEccccccCcccHHHHhccCCC-CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1076 IRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE-GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1076 i~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~-~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      +++++.+++|++++||||||++|+|||||||.++.+ +.++++++++++.+++++++.++|+|+||++||+|.+||||||
T Consensus       396 i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqr  475 (571)
T TIGR02203       396 LADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR  475 (571)
T ss_pred             HHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHH
Confidence            999999999999999999999999999999999876 7999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      ||||||||++++|+|||||||||+||+++++.|.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|++|+
T Consensus       476 QRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~  555 (571)
T TIGR02203       476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELL  555 (571)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             cCCCchhHHHHHHhh
Q 000856         1235 SRPDGAYSRLLQLQH 1249 (1252)
Q Consensus      1235 ~~~~g~y~~l~~~q~ 1249 (1252)
                      ++ ++.|++++..|.
T Consensus       556 ~~-~~~~~~~~~~~~  569 (571)
T TIGR02203       556 AR-NGLYAQLHNMQF  569 (571)
T ss_pred             Hc-CCHHHHHHHHhh
Confidence            87 789999988663

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=6.5e-78  Score=765.07  Aligned_cols=557  Identities=26%  Similarity=0.331  Sum_probs=483.5

Q ss_pred             chHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           24 LPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYA  103 (1252)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (1252)
                      ..+++++++.+++++. +...++++++..++....+++++.++|.+.... +.    ..+..+++.++++.++..++.++
T Consensus       133 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~-~~----~~l~~~~~~~~~~~~~~~~~~~~  206 (694)
T TIGR03375       133 RPKHWFWSTLKESWPL-YRDVLIASLLINLLALASPLFVMNVYDRVVPNQ-AF----ETLWVLAIGVALAIVFDFVLKTL  206 (694)
T ss_pred             ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cH----hHHHHHHHHHHHHHHHHHHHHHH
Confidence            4466677766655443 333344444434444444446788888765432 11    12223334444455667788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          104 EIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVS  183 (1252)
Q Consensus       104 ~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~  183 (1252)
                      +.++..+.+.++..++|.++++|++++|+.+ ++. ++|++++|+ +|++.+++++...+...+..+..+++.+++++++
T Consensus       207 ~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~-~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  283 (694)
T TIGR03375       207 RSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPA-SVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAII  283 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCC-ChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998 544 799999999 7999999999988888888888888888889999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 000856          184 AWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYK  263 (1252)
Q Consensus       184 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  263 (1252)
                      +|.++++.++.+|+++++..++.++.++..++..+..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+
T Consensus       284 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  363 (694)
T TIGR03375       284 GGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLK  363 (694)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000856          264 AGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIK  343 (1252)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~  343 (1252)
                      ..+.......+..++..++.++++++|++++.+|.+|+|.+++++.+......|+..+...+..+.+++.+.+|+.++++
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~  443 (694)
T TIGR03375       364 SRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQ  443 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            88888877777777777777888899999999999999999988877777778999999999999999999999999998


Q ss_pred             cCCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcE
Q 000856          344 QKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH  423 (1252)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~  423 (1252)
                      .+++.+... .........+.|+++||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus       444 ~~~e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~  521 (694)
T TIGR03375       444 LPVERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGS  521 (694)
T ss_pred             CCCCCCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            765432211 111112234579999999999743 346999999999999999999999999999999999999999999


Q ss_pred             EEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCC
Q 000856          424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQ  503 (1252)
Q Consensus       424 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~  503 (1252)
                      |.+||+|+++++..++|++|+||+|+|++|++||+|||.++.++.++++++++++.++++++++.+|+|++|.+|++|.+
T Consensus       522 I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~  601 (694)
T TIGR03375       522 VLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRS  601 (694)
T ss_pred             EEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCC
Confidence            99999999999999999999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEec
Q 000856          504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETG  583 (1252)
Q Consensus       504 LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g  583 (1252)
                      ||||||||++||||++++|+|+|||||||+||+++++.+.+.+.++.+++|+|+||||++++..||+|++|++|+++++|
T Consensus       602 LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G  681 (694)
T TIGR03375       602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADG  681 (694)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeC
Confidence            99999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             ChHHHHhc
Q 000856          584 THEELIAK  591 (1252)
Q Consensus       584 ~~~~l~~~  591 (1252)
                      +|+|++++
T Consensus       682 ~~~eLl~~  689 (694)
T TIGR03375       682 PKDQVLEA  689 (694)
T ss_pred             CHHHHHHH
Confidence            99999765

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=1.1e-77  Score=749.62  Aligned_cols=565  Identities=28%  Similarity=0.429  Sum_probs=487.1

Q ss_pred             HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          673 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF  752 (1252)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  752 (1252)
                      +++++++.++.+..+.+.++..++..++....++++..+++.....      .....+..+++++.++..+..+...++.
T Consensus         7 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (588)
T PRK13657          7 YARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGK------GDIFPLLAAWAGFGLFNIIAGVLVARHA   80 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555556666666777777777777777777788888777765421      1111222333333333334444444555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          753 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV  832 (1252)
Q Consensus       753 ~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  832 (1252)
                      .+...+...+++.++++++++.|..+|+  +.+.|++++|+++|++.+.+.+...+...+..++.+++.++++++++|++
T Consensus        81 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  158 (588)
T PRK13657         81 DRLAHRRRLAVLTEYFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRL  158 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666677778999999999999996  47899999999999999999888888888888888888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000856          833 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT  912 (1252)
Q Consensus       833 ~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~  912 (1252)
                      ++++++++|+..++.....+..++..++..+........+.|.++|+++||+|+.++.+.+++.+..++..+...+....
T Consensus       159 ~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (588)
T PRK13657        159 SLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSW  238 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888887777777777777777888899999999999999999999999999999999999998888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000856          913 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR  992 (1252)
Q Consensus       913 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~  992 (1252)
                      ......+..++..+...+++++|.+++..|.+++|.++++..+......|+..+...+..+..+..+.+|+.+.++.+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~  318 (588)
T PRK13657        239 WALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPD  318 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            87777888888888888999999999999999999999999999999999999999999999999999999998876443


Q ss_pred             CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 000856          993 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 1072 (1252)
Q Consensus       993 ~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~id 1072 (1252)
                      .+.. +...+..+..+.|+++||+|+|+++  +++|+|+||+++|||++||+|+||||||||+++|+|+|+|++|+|.+|
T Consensus       319 ~~~~-~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~  395 (588)
T PRK13657        319 VRDP-PGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID  395 (588)
T ss_pred             cCCC-CCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence            2111 1111111234579999999999742  369999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 000856         1073 GKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 1152 (1252)
Q Consensus      1073 G~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgG 1152 (1252)
                      |+|+++++.+++|++|+||||||.+|+|||||||.++.++.+|++++++++.+++++++.++|+|+||.+|++|.+||||
T Consensus       396 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG  475 (588)
T PRK13657        396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG  475 (588)
T ss_pred             CEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence            99999999999999999999999999999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhh
Q 000856         1153 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 1232 (1252)
Q Consensus      1153 QrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~e 1232 (1252)
                      |||||||||||+++|+|||||||||+||+++|+.|++.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|++
T Consensus       476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~  555 (588)
T PRK13657        476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE  555 (588)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999999878999999999999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHhh
Q 000856         1233 LVSRPDGAYSRLLQLQH 1249 (1252)
Q Consensus      1233 Ll~~~~g~y~~l~~~q~ 1249 (1252)
                      |+++ ++.|++|++.|.
T Consensus       556 l~~~-~~~y~~l~~~~~  571 (588)
T PRK13657        556 LVAR-GGRFAALLRAQG  571 (588)
T ss_pred             HHHC-CChHHHHHHHhh
Confidence            9987 899999998663

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=5.3e-77  Score=744.60  Aligned_cols=566  Identities=31%  Similarity=0.477  Sum_probs=488.1

Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           26 FFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEI  105 (1252)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (1252)
                      +++++++.+++++. ++..+++.++..+.....+++++.++|....+. ..    .....+.+.+++++++..++.+++.
T Consensus        13 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~----~~~~~~~~~~~~~~l~~~~~~~~~~   86 (582)
T PRK11176         13 FRRLWPTIAPFKAG-LIVAGVALILNAASDTFMLSLLKPLLDDGFGKA-DR----SVLKWMPLVVIGLMILRGITSFISS   86 (582)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ch----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666665554 333444444444444444556677777654321 11    1111223334446667778888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000856          106 ACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAW  185 (1252)
Q Consensus       106 ~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  185 (1252)
                      ++....+.++..++|.++++++++.|+.+|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus        87 ~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (582)
T PRK11176         87 YCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW  165 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999865 8999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH
Q 000856          186 RLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAG  265 (1252)
Q Consensus       186 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  265 (1252)
                      .+++++++++|+..++..++.++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.++|++..++..+...+..
T Consensus       166 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (582)
T PRK11176        166 QLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMV  245 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998889888888889999999888999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000856          266 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQK  345 (1252)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~  345 (1252)
                      +.......+..++..+..++++++|++.+.+|.+++|.+.+++.+......|+..+...+..+.+++.+.+|+.++++.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~  325 (582)
T PRK11176        246 SASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLE  325 (582)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            77777666666776677777888999999999999999887776666677789899999999999999999999999865


Q ss_pred             CCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE
Q 000856          346 PSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL  425 (1252)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~  425 (1252)
                      ++.+...   ...++..+.|+++||+|+|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus       326 ~~~~~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~  401 (582)
T PRK11176        326 QEKDEGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL  401 (582)
T ss_pred             CcCCCCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE
Confidence            4322111   1112223569999999999753 35699999999999999999999999999999999999999999999


Q ss_pred             ECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCC
Q 000856          426 LDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPE-ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQL  504 (1252)
Q Consensus       426 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~L  504 (1252)
                      +||+|+++++.+++|++|+||||+|.+|++||+|||.+|.++ .++++++++++.++++++++.+|+|++|.+|++|.+|
T Consensus       402 i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~L  481 (582)
T PRK11176        402 LDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLL  481 (582)
T ss_pred             ECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcC
Confidence            999999999999999999999999999999999999998764 6899999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecC
Q 000856          505 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT  584 (1252)
Q Consensus       505 SgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~  584 (1252)
                      |||||||++||||++++|+|+|||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|+++++|+
T Consensus       482 SGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~  561 (582)
T PRK11176        482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGT  561 (582)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCC
Confidence            99999999999999999999999999999999999999999999878999999999999999999999999999999999


Q ss_pred             hHHHHhcccchHHHHHHH
Q 000856          585 HEELIAKAGAYASLIRFQ  602 (1252)
Q Consensus       585 ~~~l~~~~~~~~~~~~~~  602 (1252)
                      |++++++++.|+++++.+
T Consensus       562 ~~~l~~~~~~y~~l~~~~  579 (582)
T PRK11176        562 HAELLAQNGVYAQLHKMQ  579 (582)
T ss_pred             HHHHHhCCChHHHHHHHH
Confidence            999999999999998754

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=6.7e-77  Score=737.89  Aligned_cols=565  Identities=28%  Similarity=0.420  Sum_probs=488.0

Q ss_pred             HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          673 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF  752 (1252)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  752 (1252)
                      +++++++.++.++.+...++++++..++....+++++.+++.....+.      ...+..++++..++..+..++..++.
T Consensus         7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (585)
T TIGR01192         7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD------VLPTLALWAGFGVFNTIAYVLVAREA   80 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666677777777778888888888888888888887643211      11122222223333344444445555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          753 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV  832 (1252)
Q Consensus       753 ~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  832 (1252)
                      .....+...++|.+++++++++|++||++  +++|++++|+++|++.+...+...+...+..++.+++.+++++.++|.+
T Consensus        81 ~~~~~~~~~~lr~~~~~~l~~l~~~~~~~--~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  158 (585)
T TIGR01192        81 DRLAHGRRATLLTEAFGRIISMPLSWHQQ--RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRL  158 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666667777789999999999999974  7889999999999999999998888888888888888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000856          833 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT  912 (1252)
Q Consensus       833 ~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~  912 (1252)
                      ++++++++|+++++.....+..++..++.........+.+.|+++|+++||+|+.++.+.+++.+..++..+...+..+.
T Consensus       159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (585)
T TIGR01192       159 SIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDW  238 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888888777777777777888899999999999999999999999999999999998888887777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000856          913 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR  992 (1252)
Q Consensus       913 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~  992 (1252)
                      ......+..++..+..++++++|.+++..|.++.|.++++..+......++..+.....++..+..+.+|+.+.++.+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~  318 (585)
T TIGR01192       239 WALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQ  318 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            77777777777777888889999999999999999999999999999999999999999999999999999999876443


Q ss_pred             CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 000856          993 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 1072 (1252)
Q Consensus       993 ~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~id 1072 (1252)
                      ...... ..+.....+.|+++||+|+|++.  .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++|
T Consensus       319 ~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~  395 (585)
T TIGR01192       319 REEPAD-APELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILID  395 (585)
T ss_pred             ccCCcc-CCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEEC
Confidence            211111 11111234579999999999742  358999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 000856         1073 GKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 1152 (1252)
Q Consensus      1073 G~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgG 1152 (1252)
                      |+|+++++.+.+|++++||||||.+|++|++|||.++.+++++++++++++.+++++++.++|+|+||.+|++|.+||||
T Consensus       396 g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG  475 (585)
T TIGR01192       396 GIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG  475 (585)
T ss_pred             CEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence            99999999999999999999999999999999999988888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhh
Q 000856         1153 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 1232 (1252)
Q Consensus      1153 QrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~e 1232 (1252)
                      ||||++|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++
T Consensus       476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~  555 (585)
T TIGR01192       476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQE  555 (585)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             hhcCCCchhHHHHHHhh
Q 000856         1233 LVSRPDGAYSRLLQLQH 1249 (1252)
Q Consensus      1233 Ll~~~~g~y~~l~~~q~ 1249 (1252)
                      |+++ +|.|+++++.|.
T Consensus       556 l~~~-~~~y~~l~~~~~  571 (585)
T TIGR01192       556 LIQK-DGRFYKLLRRSG  571 (585)
T ss_pred             HHHC-CChHHHHHHhCc
Confidence            9987 899999998774

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=4.7e-77  Score=744.82  Aligned_cols=567  Identities=35%  Similarity=0.555  Sum_probs=491.5

Q ss_pred             HHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          676 LLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIM  755 (1252)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  755 (1252)
                      ++++.++.+..+.+.++..++.+++....++.+..+++.......   ......+..+++++.++..+..+++.++..+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (576)
T TIGR02204         9 LWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS---SGLLNRYFAFLLVVALVLALGTAARFYLVTWL   85 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555566666667777777777777777775432211   11122233344444445556667788888899


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          756 GENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLL  835 (1252)
Q Consensus       756 ~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~  835 (1252)
                      +.++...+|..+++++++.|.++|+.  .+.|++++|+++|++.+++.+...+..++..++.++++++++++++|+++++
T Consensus        86 ~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  163 (576)
T TIGR02204        86 GERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSL  163 (576)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHcc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            99999999999999999999999975  7789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000856          836 ILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGI  915 (1252)
Q Consensus       836 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  915 (1252)
                      +++.+|+.++..++..+..++..++..+...+....+.|.++|+++||+++.++.+.+++.+..++..+...+.......
T Consensus       164 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (576)
T TIGR02204       164 VLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL  243 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888888888888888888888888888999999999999999999999999999999999999888877777777666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 000856          916 LFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDP  995 (1252)
Q Consensus       916 ~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~  995 (1252)
                      .......+..+..++++++|.+++..|.++.|.++++..+......|+..+...+.++..+..+.+|+.++++.+++.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~  323 (576)
T TIGR02204       244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA  323 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence            66666666667777888899999999999999999999999999999999999999999999999999999876543221


Q ss_pred             CCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc
Q 000856          996 DDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD 1075 (1252)
Q Consensus       996 ~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~d 1075 (1252)
                      .........+..+.|+|+||+|+|++++++++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|++||+|
T Consensus       324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~  403 (576)
T TIGR02204       324 PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD  403 (576)
T ss_pred             CCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence            11111111223467999999999975433579999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 000856         1076 IRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 1155 (1252)
Q Consensus      1076 i~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1155 (1252)
                      +++++.+++|++++|+||||++|+|||||||.++.++.++++++++++.+++.++++++|+|+||++||+|.+|||||||
T Consensus       404 i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q  483 (576)
T TIGR02204       404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ  483 (576)
T ss_pred             HHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence            99999999999999999999999999999999998888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhc
Q 000856         1156 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1156 rlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~ 1235 (1252)
                      |++||||++++|+|||||||||+||+++++.+++.+++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|++
T Consensus       484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~  563 (576)
T TIGR02204       484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA  563 (576)
T ss_pred             HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence            99999999999999999999999999999999999999888999999999999999999999999999999999999998


Q ss_pred             CCCchhHHHHHHh
Q 000856         1236 RPDGAYSRLLQLQ 1248 (1252)
Q Consensus      1236 ~~~g~y~~l~~~q 1248 (1252)
                      + ++.|++|++.|
T Consensus       564 ~-~~~~~~l~~~~  575 (576)
T TIGR02204       564 K-GGLYARLARLQ  575 (576)
T ss_pred             c-CChHHHHHhhc
Confidence            6 89999999876

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=2.4e-77  Score=738.46  Aligned_cols=521  Identities=21%  Similarity=0.265  Sum_probs=447.6

Q ss_pred             HHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          677 LKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEF--VFIYIGAGLYAVVAYLIQHYFFSI  754 (1252)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  754 (1252)
                      +++.++.+++++..++..++..++....+++++.+++.....+.     ....+  ...++++.++..++.++..++..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (529)
T TIGR02868         5 LPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-----VLYLSVAAVAVRAFGIGRAVFRYLERLVGHD   79 (529)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555566666666677777777777788887776542211     11111  111223344556667778888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          755 MGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSL  834 (1252)
Q Consensus       755 ~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l  834 (1252)
                      .+.++..++|.++++++++.|.+||++  .++|++++|+++|++.+++.+...+..++..++.++++++++++++|.+++
T Consensus        80 ~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l  157 (529)
T TIGR02868        80 AALRSLGRLRVRVYDRLARLALAGRRR--FQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL  157 (529)
T ss_pred             HHHHHHHHHHHHHHHHhhccCcccccc--CChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            999999999999999999999999974  789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000856          835 LILGTYPLLVLAN-FAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA  913 (1252)
Q Consensus       835 ~~l~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  913 (1252)
                      ++++.+|++.++. ++..+..+...++.++..++..+++.|.++|+++||+|++++.+.+++.+..++..+...+..+..
T Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (529)
T TIGR02868       158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT  237 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888877766555 333444455566667778899999999999999999999999999999999999998888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000856          914 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRI  993 (1252)
Q Consensus       914 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~  993 (1252)
                      .....+..++..+...+++++|.+++..|.++.|.+.++..+......++..+......+..+..+.+|+.++++.+++.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~  317 (529)
T TIGR02868       238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR  317 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            88888888888888888899999999999999999999999999999999999999999999999999999999765542


Q ss_pred             CCCCCC-CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC
Q 000856          994 DPDDPD-AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 1072 (1252)
Q Consensus       994 ~~~~~~-~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~id 1072 (1252)
                      +..+.. .....+..+.|+|+||+|+|+++  +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus       318 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~  395 (529)
T TIGR02868       318 PEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD  395 (529)
T ss_pred             CCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence            211111 11112234679999999999743  369999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 000856         1073 GKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 1152 (1252)
Q Consensus      1073 G~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgG 1152 (1252)
                      |+|++++ .+++|++|+||||||++|+|||||||.+|.++++||++++|++.+++++++.++|+||||++||+|.+||||
T Consensus       396 g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG  474 (529)
T TIGR02868       396 GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG  474 (529)
T ss_pred             CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence            9999999 999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 000856         1153 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 1207 (1252)
Q Consensus      1153 QrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl 1207 (1252)
                      ||||||||||++++|+|||||||||+||++||+.|++.+++..+++|+|+||||+
T Consensus       475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL  529 (529)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            9999999999999999999999999999999999999999988899999999996

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=9.5e-77  Score=753.57  Aligned_cols=568  Identities=27%  Similarity=0.388  Sum_probs=493.1

Q ss_pred             chHHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           24 LPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYA  103 (1252)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (1252)
                      ..+.+++++.+++++. +...++++++..++....+++++.++|.+.... +.    ..+..+++.++++.++..++.++
T Consensus       125 ~~~~~~~~~~~~~~~~-~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~-~~----~~l~~l~~~~~~~~~~~~~~~~l  198 (694)
T TIGR01846       125 FGFSWFIPAIIRYRKQ-FREVLLISLALQLFALVTPLLFQVVIDKVLVHR-GL----STLSVLALAMLAVAIFEPALGGL  198 (694)
T ss_pred             CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-Ch----hHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777766655443 333333333333333334446788888775432 11    12333444455566677888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          104 EIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVS  183 (1252)
Q Consensus       104 ~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~  183 (1252)
                      +.++....+.++..++|.+++++++++|+.+|++. ++|++++|+ +|++.+++++...+...+..+...++.+++++++
T Consensus       199 ~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~  276 (694)
T TIGR01846       199 RTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESR-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFY  276 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCC-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999865 899999999 6999999999888888887777777778889999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Q 000856          184 AWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYK  263 (1252)
Q Consensus       184 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  263 (1252)
                      +|.+++++++++|+++++..++.++.++..++..+..++.++.+.|.++|+++||++|.|+.+.++|.+..++..+...+
T Consensus       277 ~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  356 (694)
T TIGR01846       277 SPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFR  356 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888899988888888889999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000856          264 AGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIK  343 (1252)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~  343 (1252)
                      ..+.......+..++..+..++++++|++++.+|.+|+|.++++..+......|+..+...+..+++++.+.+|+.++++
T Consensus       357 ~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~  436 (694)
T TIGR01846       357 VTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILN  436 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            88888877777777777788888999999999999999999888877777788999999999999999999999999998


Q ss_pred             cCCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcE
Q 000856          344 QKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH  423 (1252)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~  423 (1252)
                      .+++.+..  .....+...+.|+++||+|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+
T Consensus       437 ~~~e~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~  513 (694)
T TIGR01846       437 SPTEPRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQ  513 (694)
T ss_pred             CCCCccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            76543211  111122234679999999999743 345899999999999999999999999999999999999999999


Q ss_pred             EEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCC
Q 000856          424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQ  503 (1252)
Q Consensus       424 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~  503 (1252)
                      |.+||+|+++++.+++|++|+||+|+|++|++|++|||.++.++.+++++.++++.+++++++..+|+|++|.++++|.+
T Consensus       514 I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~  593 (694)
T TIGR01846       514 VLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGAN  593 (694)
T ss_pred             EEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCC
Confidence            99999999999999999999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEec
Q 000856          504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETG  583 (1252)
Q Consensus       504 LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g  583 (1252)
                      ||||||||++||||++++|+|+|||||||+||+++++.+.+.|+++.+++|+|+||||++.+..||+|++|++|+++++|
T Consensus       594 LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g  673 (694)
T TIGR01846       594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESG  673 (694)
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeC
Confidence            99999999999999999999999999999999999999999999988899999999999999999999999999999999


Q ss_pred             ChHHHHhcccchHHHHHHH
Q 000856          584 THEELIAKAGAYASLIRFQ  602 (1252)
Q Consensus       584 ~~~~l~~~~~~~~~~~~~~  602 (1252)
                      +|+|++++++.|+++++.+
T Consensus       674 ~~~~l~~~~~~y~~l~~~~  692 (694)
T TIGR01846       674 RHEELLALQGLYARLWQQQ  692 (694)
T ss_pred             CHHHHHHcCChHHHHHHhh
Confidence            9999999999999988653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=1e-76  Score=735.51  Aligned_cols=543  Identities=25%  Similarity=0.381  Sum_probs=471.9

Q ss_pred             HHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Q 000856          699 FIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGW  778 (1252)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~f  778 (1252)
                      ++....+++++.+++........  ......|..+++++.++..++.++..++....+.+...++|.++++++++.|++|
T Consensus         9 ~~~~~~p~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~   86 (569)
T PRK10789          9 MLQLIPPKVVGIIVDGVTEQHMT--TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEF   86 (569)
T ss_pred             HHHHHHHHHHHHHHHHhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            33444566666677654322111  1112233444445555566667777888888999999999999999999999999


Q ss_pred             ccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000856          779 FDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVA-FIVEWRVSLLILGTYPLLVLANFAQQLSLKGF  857 (1252)
Q Consensus       779 f~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~  857 (1252)
                      |++  .++|++++|+++|++.+...+...+..++..++..+++++++ ++++|.+++++++++|+..++.....+..++.
T Consensus        87 ~~~--~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~  164 (569)
T PRK10789         87 YLR--HRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER  164 (569)
T ss_pred             HcC--CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            974  789999999999999999888888888877766666655555 57899999999999999888887777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          858 AGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVH  937 (1252)
Q Consensus       858 ~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  937 (1252)
                      .++.++..++..+.+.|.++|+++||+|+.++.+.+++.+..++..+...+..+..............+...+++++|.+
T Consensus       165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~  244 (569)
T PRK10789        165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW  244 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788888999999999999999999999999999999999998888888877777777776777777777888899999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEE
Q 000856          938 LVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDF 1017 (1252)
Q Consensus       938 lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf 1017 (1252)
                      ++..|.++.|.++++..+......|+..+......+..+..+.+|+.++++.+++.+...   .+..+.++.|+|+||+|
T Consensus       245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~  321 (569)
T PRK10789        245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQF  321 (569)
T ss_pred             HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEE
Confidence            999999999999999999999999999999999999999999999999997654322111   11112346799999999


Q ss_pred             ECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEEEcccccc
Q 000856         1018 AYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPAL 1097 (1252)
Q Consensus      1018 ~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~l 1097 (1252)
                      +|+.. +.++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|++||+|+++++.+.+|++++||||+|++
T Consensus       322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l  400 (569)
T PRK10789        322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL  400 (569)
T ss_pred             ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence            99743 34699999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCC
Q 000856         1098 FAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 1177 (1252)
Q Consensus      1098 f~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS 1177 (1252)
                      |++|+||||.++.++.++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+|||||||||
T Consensus       401 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts  480 (569)
T PRK10789        401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALS  480 (569)
T ss_pred             ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence            99999999999988899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcCCCchhHHHHHHhhh
Q 000856         1178 ALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHH 1250 (1252)
Q Consensus      1178 ~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~l~~~q~~ 1250 (1252)
                      +||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ +|.|+++++.|..
T Consensus       481 ~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~  552 (569)
T PRK10789        481 AVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL  552 (569)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence            99999999999999998889999999999999999999999999999999999999987 7999999987754

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=3.9e-76  Score=736.97  Aligned_cols=566  Identities=25%  Similarity=0.359  Sum_probs=475.6

Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           26 FFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEI  105 (1252)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (1252)
                      +++++.|.+++++. +++.++++++..+..+..+++++.++|.+..... ...  .....+++.++++.++..++.+++.
T Consensus        11 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   86 (592)
T PRK10790         11 LKRLLAYGSPWRKP-LGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGN-LPL--GLVAGLAAAYVGLQLLAAGLHYAQS   86 (592)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cch--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566665555443 4455566666566666666678889987653321 110  1111223334445556777888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000856          106 ACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAW  185 (1252)
Q Consensus       106 ~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  185 (1252)
                      +..+..+.++..++|.++++++++.|+++|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|
T Consensus        87 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (592)
T PRK10790         87 LLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQ-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDW  165 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999865 8999999999999999999999999999999888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH
Q 000856          186 RLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAG  265 (1252)
Q Consensus       186 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  265 (1252)
                      .+++++++++|+++++..++.++.++..++.++..++..+.+.|.+.|+++||.|+.|+.+.+++.+..++..+...+..
T Consensus       166 ~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (592)
T PRK10790        166 RMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTL  245 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888888888888788888888888888888889999999999999999999999999999998888777766665


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 000856          266 MAKGLG-LGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQ  344 (1252)
Q Consensus       266 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~  344 (1252)
                      ...+.. ..+..++..+...+++++++. +..|.++.|.+++++.+......|+..+...+..+.++..+.+|+.++++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~  324 (592)
T PRK10790        246 RLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDG  324 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            554432 222333332222223333333 578999999998888777777789999999999999999999999999986


Q ss_pred             CCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEE
Q 000856          345 KPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV  424 (1252)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i  424 (1252)
                      +++.. ...   ......+.|+++|++|+|++  +.++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|
T Consensus       325 ~~~~~-~~~---~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I  398 (592)
T PRK10790        325 PRQQY-GND---DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI  398 (592)
T ss_pred             CCccC-CCC---ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence            54321 111   11122357999999999974  2459999999999999999999999999999999999999999999


Q ss_pred             EECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCC
Q 000856          425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQL  504 (1252)
Q Consensus       425 ~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~L  504 (1252)
                      .+||+|+++++.+.+|++|+||||+|++|++||+|||.++. +.++++++++++.++++++++.+|+|+||.+|++|.+|
T Consensus       399 ~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~L  477 (592)
T PRK10790        399 RLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL  477 (592)
T ss_pred             EECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence            99999999999999999999999999999999999999997 57899999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecC
Q 000856          505 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT  584 (1252)
Q Consensus       505 SgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~  584 (1252)
                      |||||||++|||||+++|+|+|||||||+||+++++.+.+.|+++.+++|+|+||||++.+..||+|++|++|++++.|+
T Consensus       478 SGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~  557 (592)
T PRK10790        478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGT  557 (592)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcC
Confidence            99999999999999999999999999999999999999999999888899999999999999999999999999999999


Q ss_pred             hHHHHhcccchHHHHHHHHh
Q 000856          585 HEELIAKAGAYASLIRFQEM  604 (1252)
Q Consensus       585 ~~~l~~~~~~~~~~~~~~~~  604 (1252)
                      |+|++++++.|+++++.+..
T Consensus       558 ~~~L~~~~~~y~~l~~~~~~  577 (592)
T PRK10790        558 HQQLLAAQGRYWQMYQLQLA  577 (592)
T ss_pred             HHHHHhCCCHHHHHHHHHhh
Confidence            99999999999999876643

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=1.6e-75  Score=730.86  Aligned_cols=565  Identities=33%  Similarity=0.500  Sum_probs=499.0

Q ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           27 FQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIA  106 (1252)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (1252)
                      .+++++.+++++ .++++++++++.+++.+..+++++.++|...... ..    .....+...++++.++..++.|++.+
T Consensus         3 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~----~~~~~~~~~~~~~~i~~~~~~~~~~~   76 (571)
T TIGR02203         3 RRLWSYVRPYKA-GLVLAGVAMILVAATESTLAALLKPLLDDGFGGR-DR----SVLWWVPLVVIGLAVLRGICSFVSTY   76 (571)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-ch----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555434 4566677777777777777777888888654322 11    11222333455666777888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000856          107 CWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWR  186 (1252)
Q Consensus       107 ~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  186 (1252)
                      ..+..+.++..++|..+++++++.|.+++++. ++|++++|+++|++.+++++...+..++..+..+++.++++++++|.
T Consensus        77 ~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~  155 (571)
T TIGR02203        77 LLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQ  155 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999864 79999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          187 LALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGM  266 (1252)
Q Consensus       187 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  266 (1252)
                      +++++++..|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.++.++.+.+++++..++..+...+..+
T Consensus       156 l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (571)
T TIGR02203       156 LTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTS  235 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000856          267 AKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKP  346 (1252)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~  346 (1252)
                      ..+....+..++..+..++++++|++.+.+|.+++|.++++..+......|+..+...+..+.+++.+.+|+.++++.++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~  315 (571)
T TIGR02203       236 AGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPP  315 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            88777777777777777888899999999999999999998888888888999999999999999999999999998755


Q ss_pred             CCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEE
Q 000856          347 SIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL  426 (1252)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~  426 (1252)
                      +.+...   ....+..+.|+++||+|+|++. +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+
T Consensus       316 ~~~~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i  391 (571)
T TIGR02203       316 EKDTGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILL  391 (571)
T ss_pred             CCCCCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEE
Confidence            432111   1111234579999999999754 356899999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCC
Q 000856          427 DNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP-EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS  505 (1252)
Q Consensus       427 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LS  505 (1252)
                      ||.|+++++.+++|++++||||+|++|++|++|||.++.+ +.++++++++++.+++++++..+|+|+||.+|++|.+||
T Consensus       392 ~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LS  471 (571)
T TIGR02203       392 DGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLS  471 (571)
T ss_pred             CCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCC
Confidence            9999999999999999999999999999999999999986 788999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecCh
Q 000856          506 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTH  585 (1252)
Q Consensus       506 gGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~  585 (1252)
                      ||||||++||||++++|+|+|||||||+||+++++.+.+.|.+..+++|+|+||||++.+..||+|++|++|++++.|+|
T Consensus       472 gGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~  551 (571)
T TIGR02203       472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTH  551 (571)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCH
Confidence            99999999999999999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             HHHHhcccchHHHHHHH
Q 000856          586 EELIAKAGAYASLIRFQ  602 (1252)
Q Consensus       586 ~~l~~~~~~~~~~~~~~  602 (1252)
                      ++++++++.|+++++.+
T Consensus       552 ~~l~~~~~~~~~~~~~~  568 (571)
T TIGR02203       552 NELLARNGLYAQLHNMQ  568 (571)
T ss_pred             HHHHHcCCHHHHHHHHh
Confidence            99998888888876543

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=2.6e-75  Score=723.67  Aligned_cols=564  Identities=27%  Similarity=0.360  Sum_probs=481.5

Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           26 FFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEI  105 (1252)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (1252)
                      ++++++|.+++++ .++++++++++..++.+..+++++.++|.+.... +  .     ..+.+.++++.++..+..++..
T Consensus         7 ~~~l~~~l~~~k~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~--~-----~~~~~~~~~~~~~~~~~~~~~~   77 (585)
T TIGR01192         7 YVRALSYLNVHKN-RVLLIVIANITLAAITIAEPILFGRIIDAISSKS-D--V-----LPTLALWAGFGVFNTIAYVLVA   77 (585)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c--H-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777776655 4455666666667777777778899999765321 1  0     0111122223334444455555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000856          106 ACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAW  185 (1252)
Q Consensus       106 ~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  185 (1252)
                      +.....+.++..++|.+++++++++|++||+++ ++|++++|+++|++.+++++...+..++..++.+++.+++++.++|
T Consensus        78 ~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  156 (585)
T TIGR01192        78 READRLAHGRRATLLTEAFGRIISMPLSWHQQR-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDW  156 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555556666667777899999999999999865 7999999999999999999998888888888888888888999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH
Q 000856          186 RLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAG  265 (1252)
Q Consensus       186 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  265 (1252)
                      .+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+...+..
T Consensus       157 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (585)
T TIGR01192       157 RLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVL  236 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888888889999999999999999999999999999999999988888877777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000856          266 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQK  345 (1252)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~  345 (1252)
                      +..++...+..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..+..+..+.+|+.++++.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~  316 (585)
T TIGR01192       237 DWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSV  316 (585)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            77776666666666677778889999999999999999988877777777788888888899999999999999999865


Q ss_pred             CCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE
Q 000856          346 PSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL  425 (1252)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~  425 (1252)
                      ++.+... .....+...+.++++|++|+|++.  .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus       317 ~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~  393 (585)
T TIGR01192       317 FQREEPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL  393 (585)
T ss_pred             ccccCCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence            4322111 111111223569999999999743  3589999999999999999999999999999999999999999999


Q ss_pred             ECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCC
Q 000856          426 LDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS  505 (1252)
Q Consensus       426 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LS  505 (1252)
                      +||.|+++++.+.+|++++||+|+|++|++|++|||.++.++.++++++.+++.+++++++..+|+|++|.+|++|.+||
T Consensus       394 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LS  473 (585)
T TIGR01192       394 IDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLS  473 (585)
T ss_pred             ECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCC
Confidence            99999999999999999999999999999999999999988888899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecCh
Q 000856          506 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTH  585 (1252)
Q Consensus       506 gGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~  585 (1252)
                      ||||||++|||||+++|+++|||||||+||+++++.+.+.|.++.+++|+|+||||++.+..||+|++|++|++++.|+|
T Consensus       474 gGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~  553 (585)
T TIGR01192       474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSF  553 (585)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCH
Confidence            99999999999999999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             HHHHhcccchHHHHHHH
Q 000856          586 EELIAKAGAYASLIRFQ  602 (1252)
Q Consensus       586 ~~l~~~~~~~~~~~~~~  602 (1252)
                      ++++++++.|+++++.+
T Consensus       554 ~~l~~~~~~y~~l~~~~  570 (585)
T TIGR01192       554 QELIQKDGRFYKLLRRS  570 (585)
T ss_pred             HHHHHCCChHHHHHHhC
Confidence            99999999999988765

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=4.4e-75  Score=726.19  Aligned_cols=565  Identities=29%  Similarity=0.420  Sum_probs=478.0

Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           26 FFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEI  105 (1252)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (1252)
                      +++++++.+++ +..+.+..+++++..++.+..+++++.++|.+.... .       ...+.+.+++++++..+..++..
T Consensus         7 ~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~   77 (588)
T PRK13657          7 YARVLQYLGAE-KRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-D-------IFPLLAAWAGFGLFNIIAGVLVA   77 (588)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677776554 334445555555555555555667888888764321 0       11122222223333334445444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000856          106 ACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAW  185 (1252)
Q Consensus       106 ~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  185 (1252)
                      +...+...++..++|.+++++++++|+.+|++. ++|++++|+++|++.+.+.+...+..++..++.+++.++++++++|
T Consensus        78 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (588)
T PRK13657         78 RHADRLAHRRRLAVLTEYFERIIQLPLAWHSQR-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNW  156 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555666667777899999999999999864 8999999999999999998888888888888888888888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH
Q 000856          186 RLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAG  265 (1252)
Q Consensus       186 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  265 (1252)
                      .+++++++++|+..++...+.++.++..++.++..++..+.+.|.+.|+++||.|+.++.+.+++.+..++..+...+..
T Consensus       157 ~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (588)
T PRK13657        157 RLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVL  236 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988888888888888888888888888889999999999999999999999999999999999999888888877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000856          266 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQK  345 (1252)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~  345 (1252)
                      ...+....+..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..+..+..+.+|+.++++.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~  316 (588)
T PRK13657        237 SWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAV  316 (588)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            77777666666777777778889999999999999999988877777777788888888899999999999999998865


Q ss_pred             CCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE
Q 000856          346 PSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL  425 (1252)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~  425 (1252)
                      ++.+..+ ......+..+.|+++|++|+|+++  .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.
T Consensus       317 ~~~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~  393 (588)
T PRK13657        317 PDVRDPP-GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL  393 (588)
T ss_pred             cccCCCC-CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence            4321111 111112223569999999999742  3589999999999999999999999999999999999999999999


Q ss_pred             ECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCC
Q 000856          426 LDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS  505 (1252)
Q Consensus       426 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LS  505 (1252)
                      +||+|+++++.+.+|++|+||||+|++|++|++|||.++.|+.++++++.+++.+++++++..+|+|++|.+|++|.+||
T Consensus       394 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LS  473 (588)
T PRK13657        394 IDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLS  473 (588)
T ss_pred             ECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCC
Confidence            99999999999999999999999999999999999999988888999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecCh
Q 000856          506 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTH  585 (1252)
Q Consensus       506 gGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~  585 (1252)
                      ||||||++||||++++|+|+|||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus       474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~  553 (588)
T PRK13657        474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSF  553 (588)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCH
Confidence            99999999999999999999999999999999999999999988779999999999999999999999999999999999


Q ss_pred             HHHHhcccchHHHHHHHH
Q 000856          586 EELIAKAGAYASLIRFQE  603 (1252)
Q Consensus       586 ~~l~~~~~~~~~~~~~~~  603 (1252)
                      +++++.++.|.++++.+.
T Consensus       554 ~~l~~~~~~y~~l~~~~~  571 (588)
T PRK13657        554 DELVARGGRFAALLRAQG  571 (588)
T ss_pred             HHHHHCCChHHHHHHHhh
Confidence            999999999999887654

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=8.5e-78  Score=694.88  Aligned_cols=480  Identities=32%  Similarity=0.503  Sum_probs=370.9

Q ss_pred             cEEEEeEEEECCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC----CcEEEECCccccCCCHHH
Q 000856          364 NIEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN----AGHVLLDNVDIKTLQLRW  438 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~----~G~i~~~g~~~~~~~~~~  438 (1252)
                      -++++|++..|..... ..+++|+||++.+||++||||+|||||||+++.|.|+.++.    +|+|.++|.|+...+.+.
T Consensus         5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~   84 (539)
T COG1123           5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE   84 (539)
T ss_pred             eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence            5899999999975422 35899999999999999999999999999999999999987    899999999998877654


Q ss_pred             H---h-hhceEEccCCC-Cchh--cHHHHHhc----CCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccc--cCCCCCCC
Q 000856          439 L---R-DQIGLVNQEPA-LFAT--TILENILY----GKPEATMAEVEAAASAANAHSFITLLPNGYSTQV--GERGVQLS  505 (1252)
Q Consensus       439 ~---~-~~i~~v~Q~~~-l~~~--tv~~ni~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~g~~LS  505 (1252)
                      +   | +.|+|+||+|. .+|.  ||.+-|.-    ... ...++..  .+.   .+.++..  |+....  ++.+.+||
T Consensus        85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~-~~~~ea~--~~a---~elL~~V--gl~~~~~~~~yPheLS  156 (539)
T COG1123          85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK-GSRAEAR--KRA---VELLEQV--GLPDPERRDRYPHQLS  156 (539)
T ss_pred             HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc-ccHHHHH--HHH---HHHHHHc--CCCChhhhccCCcccC
Confidence            4   3 46999999984 4543  66555532    111 1111111  111   2222222  332222  45788999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEe
Q 000856          506 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVET  582 (1252)
Q Consensus       506 gGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~  582 (1252)
                      ||||||+.||+||+.+|++||+||||++||+.++.+|.+.|+++.  .|.++|+||||+..+.+ ||||+||.+|+++|.
T Consensus       157 GG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~  236 (539)
T COG1123         157 GGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVET  236 (539)
T ss_pred             chHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEe
Confidence            999999999999999999999999999999999999999999986  48999999999999977 899999999999999


Q ss_pred             cChHHHHhcc-cchHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCcccccccccc
Q 000856          583 GTHEELIAKA-GAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAE  661 (1252)
Q Consensus       583 g~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  661 (1252)
                      |+.++++++. ..|..-.                                                              
T Consensus       237 G~~~~i~~~p~hpYT~~L--------------------------------------------------------------  254 (539)
T COG1123         237 GPTEEILSNPQHPYTRGL--------------------------------------------------------------  254 (539)
T ss_pred             cCHHHHHhccCCcccHHH--------------------------------------------------------------
Confidence            9999987642 0110000                                                              


Q ss_pred             cccCCCCCchHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHH
Q 000856          662 TDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYA  741 (1252)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  741 (1252)
                                     +.                                       ..+                     
T Consensus       255 ---------------l~---------------------------------------a~p---------------------  259 (539)
T COG1123         255 ---------------LA---------------------------------------AVP---------------------  259 (539)
T ss_pred             ---------------Hh---------------------------------------hCC---------------------
Confidence                           00                                       000                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          742 VVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTS  821 (1252)
Q Consensus       742 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~  821 (1252)
                                                          ..+... ..                                   
T Consensus       260 ------------------------------------~~~~~~-~~-----------------------------------  267 (539)
T COG1123         260 ------------------------------------RLGDEK-II-----------------------------------  267 (539)
T ss_pred             ------------------------------------Cccccc-cc-----------------------------------
Confidence                                                000000 00                                   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHh
Q 000856          822 FIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRV  901 (1252)
Q Consensus       822 ~i~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~  901 (1252)
                                                                                                      
T Consensus       268 --------------------------------------------------------------------------------  267 (539)
T COG1123         268 --------------------------------------------------------------------------------  267 (539)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          902 PQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVG  981 (1252)
Q Consensus       902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  981 (1252)
                                                                                                      
T Consensus       268 --------------------------------------------------------------------------------  267 (539)
T COG1123         268 --------------------------------------------------------------------------------  267 (539)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCC--------CCccceeeeeEEEeCCcEEEEEcCCCCChHH
Q 000856          982 SVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSR--------PDVVVFKDFNLRIRAGQSQALVGASGSGKSS 1053 (1252)
Q Consensus       982 ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~--------~~~~vL~~isl~I~~Ge~vaIvG~SGSGKST 1053 (1252)
                            ..+.. .+  .      +...-++++|++.+|..+        ....+++||||++++||++||||+|||||||
T Consensus       268 ------~~~~~-~~--~------~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKST  332 (539)
T COG1123         268 ------RLPRR-GP--L------RAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKST  332 (539)
T ss_pred             ------ccccc-cc--c------ccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHH
Confidence                  00000 00  0      011248999999999742        1246899999999999999999999999999


Q ss_pred             HHHHHhccCCCCCceEEECCcc--cCCCCHHHHhcccEEEcccccc---CcccHHHHhccCC----C---CCCHHHHHHH
Q 000856         1054 VIALIERFYDPTAGKVMIDGKD--IRRLNLKSLRLKIGLVQQEPAL---FAASIFDNIAYGK----E---GATEAEVVEA 1121 (1252)
Q Consensus      1054 Ll~lL~rl~~p~~G~I~idG~d--i~~~~~~~lR~~i~~VpQd~~l---f~gTIreNl~~~~----~---~~~deei~~a 1121 (1252)
                      |+++|+|+.+|++|+|.++|.|  .+.-+...+|+++-+|+|||+-   -..||+++|.-.-    .   ....+.+.+.
T Consensus       333 lar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~l  412 (539)
T COG1123         333 LARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAEL  412 (539)
T ss_pred             HHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHH
Confidence            9999999999999999999977  3333355688899999999963   2579999986321    1   1112346667


Q ss_pred             HHHcCchh-hHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CC
Q 000856         1122 ARAANVHG-FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GR 1198 (1252)
Q Consensus      1122 l~~~~l~~-~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~ 1198 (1252)
                      ++.+++.+ +....|           ..||||||||+||||||..+|++||+|||||+||+.+.+.|.+.|.++.+  |.
T Consensus       413 l~~VgL~~~~l~ryP-----------~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~  481 (539)
T COG1123         413 LELVGLPPEFLDRYP-----------HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGL  481 (539)
T ss_pred             HHHcCCCHHHHhcCc-----------hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCC
Confidence            78888764 333333           57999999999999999999999999999999999999999999988763  79


Q ss_pred             eEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcCCCchhHHHHH
Q 000856         1199 TTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 1246 (1252)
Q Consensus      1199 TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~l~~ 1246 (1252)
                      |.|+|||+++.++. ||||+||++|+|||.|+.+++.+++...|.+.+-
T Consensus       482 t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~  530 (539)
T COG1123         482 TYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLL  530 (539)
T ss_pred             EEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHH
Confidence            99999999999976 8999999999999999999999998888976654

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-75  Score=655.98  Aligned_cols=503  Identities=24%  Similarity=0.342  Sum_probs=439.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000856           92 YLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLS  171 (1252)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~  171 (1252)
                      ++++.+.+..|...+..|....++..++|.++|+++...++.-..+ .++||+++|++.|++.+++.+-..+.+.+.++.
T Consensus        66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r-~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~  144 (573)
T COG4987          66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLR-YRSGDLLNRLVADVDALDNLYLRVIAPAVVALV  144 (573)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHh-cChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHH
Confidence            5688899999999999999999999999999999999999998875 489999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHH
Q 000856          172 TFLAGLVVGFVSAWRLALLSI-AVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSY  250 (1252)
Q Consensus       172 ~~i~~~~~~~~~~~~l~l~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~  250 (1252)
                      ...+..+...+++|.+++.+. .++.+++++...+.+.-++..++.....+.+-+.+.|.+.|....+.||.++.+.+.+
T Consensus       145 ~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l  224 (573)
T COG4987         145 LIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTAL  224 (573)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHH
Confidence            888777777788998876443 3445555566677777777778888888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000856          251 SDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWA-LVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSF-SNLGAF  328 (1252)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~  328 (1252)
                      +.....+.+...|...+.++...+..++..+..+ .++|.+ ..+..|..+...+..+++.++....++..+. ..+...
T Consensus       225 ~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~l  303 (573)
T COG4987         225 EATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHL  303 (573)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHh
Confidence            9999999999999888888888877777766655 344443 4444566664444444444444444554444 556778


Q ss_pred             HHHHHHHHHHHHHHccCCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHH
Q 000856          329 SKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKST  408 (1252)
Q Consensus       329 ~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKST  408 (1252)
                      .+...|++|+.++.+++++...+..   ..+..+..++++||||+|++. +.++|+|+||++++||++||+|+|||||||
T Consensus       304 gq~~~Sa~Rl~~i~~q~~e~~~~~~---~~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKST  379 (573)
T COG4987         304 GQVIASARRLNDILDQKPEVTFPDE---QTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKST  379 (573)
T ss_pred             hHHHHHHHHHhhhccCCcccCCCcc---ccCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHH
Confidence            8899999999999998876533211   111122279999999999865 457999999999999999999999999999


Q ss_pred             HHHHHhcccCCCCcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhh
Q 000856          409 VVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITL  488 (1252)
Q Consensus       409 ll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (1252)
                      |++++.|.++|++|+|.++|.++..++.+.+|+.|++++|.+++|++|+|||+.+++|++++++++++++++++++.++.
T Consensus       380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~  459 (573)
T COG4987         380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLES  459 (573)
T ss_pred             HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhcc
Q 000856          489 LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV  568 (1252)
Q Consensus       489 ~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~  568 (1252)
                      .|+|++|.+||.|..||||||||++|||+|++|++++||||||.+||+.|++++.+.+.+..+|||+|+||||+..++.+
T Consensus       460 ~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~  539 (573)
T COG4987         460 APDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERM  539 (573)
T ss_pred             ChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             CEEEEEeCCEEEEecChHHHHhcccchHHHHH
Q 000856          569 DTVAVIQQGQVVETGTHEELIAKAGAYASLIR  600 (1252)
Q Consensus       569 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~  600 (1252)
                      |||+||++|+|+++|+|++++.++|.|.++++
T Consensus       540 drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q  571 (573)
T COG4987         540 DRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ  571 (573)
T ss_pred             CEEEEEECCeeeecCCHHhhhccccHHHHHhc
Confidence            99999999999999999999999999988763

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=3.8e-75  Score=721.59  Aligned_cols=542  Identities=26%  Similarity=0.395  Sum_probs=472.1

Q ss_pred             HHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000856           51 HGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQ  130 (1252)
Q Consensus        51 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~i~~~  130 (1252)
                      .++..|+   +++.++|.+.....+.    .....++..++++.++..++.|+..++.+..+.++..++|.+++++++++
T Consensus        10 ~~~~~p~---~~~~iid~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~   82 (569)
T PRK10789         10 LQLIPPK---VVGIIVDGVTEQHMTT----GQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQ   82 (569)
T ss_pred             HHHHHHH---HHHHHHHHhccCCcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3444555   5778888654321111    12223444445555667778888888888999999999999999999999


Q ss_pred             ChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          131 DVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVG-FVSAWRLALLSIAVIPGIAFAGGLYAYTL  209 (1252)
Q Consensus       131 ~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~l~~l~~~p~~~~~~~~~~~~~  209 (1252)
                      |+++|++. ++|++++|+++|++.++..+...+..++..++.+++.++++ ++++|.+++++++++|+++++...+.++.
T Consensus        83 ~~~~~~~~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~  161 (569)
T PRK10789         83 HPEFYLRH-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQL  161 (569)
T ss_pred             CHHHHcCC-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999865 79999999999999999888888888888776666665555 57999999999999999998888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          210 TGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWY  289 (1252)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (1252)
                      ++..++.++..++..+.+.|.+.|+++||+|++|+.+.++|.+..++..+...+..+..+....+...+..++.++++++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  241 (569)
T PRK10789        162 HERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGG  241 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888899999999999999999999999999999999999998888888877777776666666666666778889


Q ss_pred             HHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcCCCCcccEEEEe
Q 000856          290 AGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKN  369 (1252)
Q Consensus       290 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~  369 (1252)
                      |++++.+|.+++|.++++..+......|+..+...+..+.+++.+.+|+.++++.+++.+...   ...+...+.|+++|
T Consensus       242 g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~  318 (569)
T PRK10789        242 GSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNI  318 (569)
T ss_pred             HHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEE
Confidence            999999999999999888877777778888888899999999999999999998764422111   11112245699999


Q ss_pred             EEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhceEEccC
Q 000856          370 VTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQE  449 (1252)
Q Consensus       370 v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~  449 (1252)
                      ++|+|+.. +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.+||+++++.+..++|++++||+|+
T Consensus       319 v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~  397 (569)
T PRK10789        319 RQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQT  397 (569)
T ss_pred             EEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccC
Confidence            99999753 34689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 000856          450 PALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE  529 (1252)
Q Consensus       450 ~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDE  529 (1252)
                      |++|++|++|||.++.++.++++++.+++.+++++++..+|+|++|.+|++|.+||||||||++||||++++|+++||||
T Consensus       398 ~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDE  477 (569)
T PRK10789        398 PFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDD  477 (569)
T ss_pred             CeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            99999999999999988888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhcccchHHHHHHHHh
Q 000856          530 ATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEM  604 (1252)
Q Consensus       530 pts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~  604 (1252)
                      |||+||+++++.+.+.|+++.+++|+|+||||++.+..||+|++|++|+++++|+|++++++++.|+++++.++.
T Consensus       478 pts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~  552 (569)
T PRK10789        478 ALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQL  552 (569)
T ss_pred             ccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhhh
Confidence            999999999999999999988899999999999999999999999999999999999999999999999877643

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.8e-78  Score=655.85  Aligned_cols=491  Identities=31%  Similarity=0.453  Sum_probs=436.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000856          750 YFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIV-AFIV  828 (1252)
Q Consensus       750 ~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~-~~~~  828 (1252)
                      .++...+..+...+--+.|.|+.++++.|.-+  +.+|-+..-+......++..+...+..++..++-+...+++ ...+
T Consensus         4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~--r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~   81 (497)
T COG5265           4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE--RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY   81 (497)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh--cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence            34556777788888889999999999999865  44555555555555556666666666666666655554444 4456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHH
Q 000856          829 EWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR  908 (1252)
Q Consensus       829 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~  908 (1252)
                      +||.+.+.++++.++.++.....-..-.+.++...+.+.......+++-+.+|+|.|+-|+.+..++...++.+.+...+
T Consensus        82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k  161 (497)
T COG5265          82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK  161 (497)
T ss_pred             ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence            89999999999888888877766666667777888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000856          909 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLD  988 (1252)
Q Consensus       909 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~  988 (1252)
                      .+..-.++......+...........+...+..|.+|.|+++..-.++.....|+..+.....++.++...++++++.++
T Consensus       162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~  241 (497)
T COG5265         162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD  241 (497)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence            98888888888888888888888899999999999999999999999999999999998899999999999999999998


Q ss_pred             ccCCCCCCCCCCCCCC-CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc
Q 000856          989 RSTRIDPDDPDAEPVE-TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067 (1252)
Q Consensus       989 ~~~~~~~~~~~~~~~~-~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G 1067 (1252)
                      .+.+.. +.+..++.+ -..|.|.|+||+|.|.  +.+|+|+|+||++++|+++||||+||+||||++++|+|||++++|
T Consensus       242 ~~~~v~-d~pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG  318 (497)
T COG5265         242 VEAEVS-DAPDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG  318 (497)
T ss_pred             cchhhc-cCCCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence            765543 223334444 3467899999999995  356899999999999999999999999999999999999999999


Q ss_pred             eEEECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCC
Q 000856         1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGV 1147 (1252)
Q Consensus      1068 ~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~ 1147 (1252)
                      .|.+||+||+++..+.+|+.||+||||..||++|+..|+.+|.+.+++||++.|++.+++++|++++|+||||.|||+|-
T Consensus       319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl  398 (497)
T COG5265         319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL  398 (497)
T ss_pred             eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEe
Q 000856         1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 1227 (1252)
Q Consensus      1148 ~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~ 1227 (1252)
                      .||||||||+||||++|++|+||+||||||+||..||++||.+|++..+|+|.++||||++|+.++|.|+||++|+|+|.
T Consensus       399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er  478 (497)
T COG5265         399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER  478 (497)
T ss_pred             eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cChhhhhcCCCchhHHHHH
Q 000856         1228 GSHSELVSRPDGAYSRLLQ 1246 (1252)
Q Consensus      1228 G~~~eLl~~~~g~y~~l~~ 1246 (1252)
                      |+|+||+++ +|.|++||.
T Consensus       479 g~h~~ll~~-~g~ya~mw~  496 (497)
T COG5265         479 GTHEELLAA-GGLYAEMWR  496 (497)
T ss_pred             CcHHHHHHc-CChHHHHhc
Confidence            999999998 999999996

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=1.8e-75  Score=721.86  Aligned_cols=525  Identities=24%  Similarity=0.293  Sum_probs=443.3

Q ss_pred             HHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           28 QLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIAC  107 (1252)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (1252)
                      +++++.+++++. +++.++++++..+.....+++++.++|......  . ..  ....+...++++.++..++.|+..++
T Consensus         3 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (529)
T TIGR02868         3 RILPLLQPRTRR-LVVAILLGALALGSAVALLGVSAWLISRAAEMP--P-VL--YLSVAAVAVRAFGIGRAVFRYLERLV   76 (529)
T ss_pred             hHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--h-hH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666555443 334455555545444445556788888754321  1 00  01111112223456677788899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000856          108 WMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRL  187 (1252)
Q Consensus       108 ~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  187 (1252)
                      .+..+.++..++|.+++++++++|+++|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.+
T Consensus        77 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l  155 (529)
T TIGR02868        77 GHDAALRSLGRLRVRVYDRLARLALAGRRRF-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPA  155 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCccccccC-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            9999999999999999999999999999865 899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          188 ALLSIAVIPGIAFAGGLYA-YTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGM  266 (1252)
Q Consensus       188 ~l~~l~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~  266 (1252)
                      ++++++.+|++.++...+. +..++..++.++..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+..+
T Consensus       156 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (529)
T TIGR02868       156 ALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAAR  235 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888787766654444 444556667777888999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 000856          267 AKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKP  346 (1252)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~  346 (1252)
                      ..+....+..++..+..++++++|++++.+|.+++|.+.+++++......++..+...+..+.++..+.+|+.++++.++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~  315 (529)
T TIGR02868       236 ATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKG  315 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            88877777777777777888899999999999999998888877777777888888888999999999999999998765


Q ss_pred             CCCCCCCC-CCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE
Q 000856          347 SIIQDPTN-GRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL  425 (1252)
Q Consensus       347 ~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~  425 (1252)
                      +.+..... .....+..+.|+++||+|+|+++  .++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~  393 (529)
T TIGR02868       316 PRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT  393 (529)
T ss_pred             CcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            42211110 11111223569999999999753  3599999999999999999999999999999999999999999999


Q ss_pred             ECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCC
Q 000856          426 LDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS  505 (1252)
Q Consensus       426 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LS  505 (1252)
                      +||+|++++ .+++|++|+||||+|++|++||+|||.+|.|+.++++++++++.+++++++..+|+|+||.+||+|.+||
T Consensus       394 i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS  472 (529)
T TIGR02868       394 LDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLS  472 (529)
T ss_pred             ECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCC
Confidence            999999999 9999999999999999999999999999998889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCc
Q 000856          506 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL  562 (1252)
Q Consensus       506 gGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~  562 (1252)
                      ||||||++||||++++|+|+|||||||+||+++++.+++.+.++.+++|+|+||||+
T Consensus       473 GGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl  529 (529)
T TIGR02868       473 GGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL  529 (529)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            999999999999999999999999999999999999999999988899999999995

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=1.1e-74  Score=723.46  Aligned_cols=570  Identities=35%  Similarity=0.552  Sum_probs=485.9

Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           26 FFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEI  105 (1252)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (1252)
                      ++.++++.+++++ .+++.+++.++.++.....+++++.++|...... +.    .....+..+++++.++..++.+++.
T Consensus         6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~   79 (576)
T TIGR02204         6 LAALWPFVRPYRG-RVLAALVALLITAAATLSLPYAVRLMIDHGFSKD-SS----GLLNRYFAFLLVVALVLALGTAARF   79 (576)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccc-cH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556555444 3444555566666665566667888888754322 11    1122233334444555667778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000856          106 ACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAW  185 (1252)
Q Consensus       106 ~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  185 (1252)
                      +.....+.++..++|..++++++++|+++|+.. ++|++++|+++|++.+++++...+..++..+..+++.++++++++|
T Consensus        80 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (576)
T TIGR02204        80 YLVTWLGERVVADIRRAVFAHLISLSPSFFDKN-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSP  158 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            888999999999999999999999999999864 7999999999999999999999899989999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH
Q 000856          186 RLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAG  265 (1252)
Q Consensus       186 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  265 (1252)
                      .+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||.++.|+.+.+++++..++..+...+..
T Consensus       159 ~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (576)
T TIGR02204       159 KLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRI  238 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998888888888888889999999999999999999999999999999999999999999999999988888777766


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000856          266 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQK  345 (1252)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~  345 (1252)
                      ........+..++..+..++++++|++.+.+|.+++|.++++..+......|+..+...+..+.+++.+.+|+.++++.+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~  318 (576)
T TIGR02204       239 RTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAE  318 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            66555555555555556667778899999999999999888877777777889999999999999999999999999865


Q ss_pred             CCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEE
Q 000856          346 PSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL  425 (1252)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~  425 (1252)
                      ++.+..........+..+.|+++||+|+|+++.+.++|+|+||+++|||+++|+||||||||||+++|+|+++|++|+|.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~  398 (576)
T TIGR02204       319 PDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL  398 (576)
T ss_pred             CcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence            44221111111111223469999999999854335699999999999999999999999999999999999999999999


Q ss_pred             ECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCC
Q 000856          426 LDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS  505 (1252)
Q Consensus       426 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LS  505 (1252)
                      +||.|+++++...+|++++|+||+|++|++||+|||.++.|+.++++++++++.+++.++++.+|+|++|.+|++|.+||
T Consensus       399 i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LS  478 (576)
T TIGR02204       399 LDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS  478 (576)
T ss_pred             ECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCC
Confidence            99999999999999999999999999999999999999988888999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecCh
Q 000856          506 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTH  585 (1252)
Q Consensus       506 gGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~  585 (1252)
                      ||||||++||||++++|+++|||||||+||+++++.+.+.++++.+++|+|+||||++.+..+|+|++|++|++++.|+|
T Consensus       479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~  558 (576)
T TIGR02204       479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTH  558 (576)
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecH
Confidence            99999999999999999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             HHHHhcccchHHHHHHH
Q 000856          586 EELIAKAGAYASLIRFQ  602 (1252)
Q Consensus       586 ~~l~~~~~~~~~~~~~~  602 (1252)
                      ++++++++.|+++++.+
T Consensus       559 ~~l~~~~~~~~~l~~~~  575 (576)
T TIGR02204       559 AELIAKGGLYARLARLQ  575 (576)
T ss_pred             HHHHHcCChHHHHHhhc
Confidence            99999999998877543

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=1.7e-74  Score=713.22  Aligned_cols=526  Identities=24%  Similarity=0.305  Sum_probs=457.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          686 YSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRR  765 (1252)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  765 (1252)
                      .+.++++.+++.+++....+++++.+++.....+..  ......+..+++++.++..++.++..++..+.+.+...++|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~   81 (529)
T TIGR02857         4 ALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP--LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE   81 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666777777778888888888765321111  112233445555666667778888899999999999999999


Q ss_pred             HHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          766 MMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVL  845 (1252)
Q Consensus       766 ~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~p~~~~  845 (1252)
                      ++++++++.|.+||+  +.++|++++|+++|++.+++.+...+..++..++.+++++++++.++|.+++++++.+|+.++
T Consensus        82 ~l~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~  159 (529)
T TIGR02857        82 RLLAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI  159 (529)
T ss_pred             HHHHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            999999999999997  488999999999999999999999999999999888888999999999999999998888887


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          846 ANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALH  925 (1252)
Q Consensus       846 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  925 (1252)
                      +.+...++.+...++..+...+..+.+.|.++|+++||+|+.++.+.+++.+..++..+...+..+.......+..++..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (529)
T TIGR02857       160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT  239 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777888888899999999999999999999999999999999988888887777777766666666666


Q ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCC
Q 000856          926 ASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVET 1005 (1252)
Q Consensus       926 ~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~ 1005 (1252)
                      +...++..++.+.+..|.++.|.++++..+......|+..+......+.++..+.+|+.++++.+++..+. . ..+ .+
T Consensus       240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~-~-~~~-~~  316 (529)
T TIGR02857       240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK-A-PVT-AA  316 (529)
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-c-CCC-CC
Confidence            66666555666666799999999999999999999999999999999999999999999999744321111 1 111 11


Q ss_pred             ccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHh
Q 000856         1006 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 1085 (1252)
Q Consensus      1006 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR 1085 (1252)
                      ..+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.+||+|+++++.+++|
T Consensus       317 ~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr  395 (529)
T TIGR02857       317 PAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR  395 (529)
T ss_pred             CCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence            23579999999999753 34699999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 000856         1086 LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 1165 (1252)
Q Consensus      1086 ~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 1165 (1252)
                      ++++||||||.+|+|||||||.++.++.+|++++++++.++++++++++|+||||++||+|.+||||||||++||||+++
T Consensus       396 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~  475 (529)
T TIGR02857       396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR  475 (529)
T ss_pred             hheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999888889999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEE
Q 000856         1166 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVV 1219 (1252)
Q Consensus      1166 ~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl 1219 (1252)
                      +|+|+|||||||+||++|++.+++.+++..+++|+|+||||+++++.||+|+||
T Consensus       476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l  529 (529)
T TIGR02857       476 DAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL  529 (529)
T ss_pred             CCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence            999999999999999999999999999988899999999999999999999986

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-74  Score=649.60  Aligned_cols=548  Identities=26%  Similarity=0.352  Sum_probs=442.4

Q ss_pred             HHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           48 AVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAV  127 (1252)
Q Consensus        48 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~i  127 (1252)
                      .+.........+.+++.++|........+ .........+..+.+..+...++..++...+.++++++..+.-.++|.+.
T Consensus        39 l~~aK~l~v~vp~~~~~~id~l~~~~~~~-a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~  117 (591)
T KOG0057|consen   39 LLGAKILNVQVPFIFKLIIDGLNDADGNP-AVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHL  117 (591)
T ss_pred             HHhhhHhheehHHHHHHHHhhhhhcccCc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334555555556777777653111111 11112223344555667788889999999999999999999999999999


Q ss_pred             HcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000856          128 LKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVV-GFVSAWRLALLSIAVIPGIAFAGGLYA  206 (1252)
Q Consensus       128 ~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~l~~l~~~p~~~~~~~~~~  206 (1252)
                      +.+++++|.+ .++|++.+.+......|...+...+..++..++-+...... ..-++...+++.+..+.....+.....
T Consensus       118 ~~ld~~~~~~-~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t  196 (591)
T KOG0057|consen  118 MSLDLSFFLS-RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVT  196 (591)
T ss_pred             HhhhHHhhcC-CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeeh
Confidence            9999999985 48999999999999999998887777777666554333322 233455555555544444444444445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          207 YTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALV  286 (1252)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (1252)
                      ....+...+...+.+.+.+.+.|.+.|..+||+||.|+++.++|.....++.+...+.....++.......+.....+.+
T Consensus       197 ~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~i  276 (591)
T KOG0057|consen  197 RWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFI  276 (591)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            55556666777788888999999999999999999999999999999999988888777666655544444444444555


Q ss_pred             HHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcCCCCcccEE
Q 000856          287 FWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIE  366 (1252)
Q Consensus       287 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~  366 (1252)
                      .+.+..-+.++.++.|++............|+..+...+..+.++..-++-.+...+....+.   ....+....++.|+
T Consensus       277 m~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~---~~~~~i~~~~~~I~  353 (591)
T KOG0057|consen  277 MVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQ---EAALPIELFGGSIE  353 (591)
T ss_pred             HHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhh---hccCCcccCCCcEE
Confidence            566666677889999988766555566666777777777777777776666555443322211   11122333456799


Q ss_pred             EEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhceEE
Q 000856          367 FKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLV  446 (1252)
Q Consensus       367 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v  446 (1252)
                      |+||+|+|+.  ++++|+++||+|++||++||||+|||||||++|+|.||++ ++|+|++||+|+++++.+.+|+.||||
T Consensus       354 F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~V  430 (591)
T KOG0057|consen  354 FDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVV  430 (591)
T ss_pred             EEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEe
Confidence            9999999973  4569999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             ccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 000856          447 NQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILL  526 (1252)
Q Consensus       447 ~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~ill  526 (1252)
                      |||..||++||..||.+|++.++++++.++|+.+++||.+.++|+||+|.+||+|..|||||||||+||||++++|+|++
T Consensus       431 PQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~  510 (591)
T KOG0057|consen  431 PQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILL  510 (591)
T ss_pred             CCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhcccchHHHHHHHH
Q 000856          527 LDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQE  603 (1252)
Q Consensus       527 lDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~  603 (1252)
                      ||||||+||.++|+.+.+.+.+...++|+|+|.||+++++.+|+|+++++|++.+.|+|+|++..++.|+++|..|.
T Consensus       511 ~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~~  587 (591)
T KOG0057|consen  511 LDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQT  587 (591)
T ss_pred             ecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcccc
Confidence            99999999999999999999998889999999999999999999999999999999999999998899999987653

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=3.3e-73  Score=702.01  Aligned_cols=537  Identities=24%  Similarity=0.342  Sum_probs=459.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          684 WPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRV  763 (1252)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  763 (1252)
                      ++.+...++..++..++....++.+..+++.......   ......+..+++++.++..++.+++.++..+.+.++..++
T Consensus         5 k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   81 (544)
T TIGR01842         5 KSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS---VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL   81 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666666777778888888876542211   1112234444555556667778888899999999999999


Q ss_pred             HHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          764 RRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAD-RISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPL  842 (1252)
Q Consensus       764 ~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~p~  842 (1252)
                      |.++++++++.|+..+       +...+++++|++.+++.+.. .+..++..++.++ .++++++++|++++++++.+|+
T Consensus        82 r~~~~~~ll~~~~~~~-------~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l  153 (544)
T TIGR01842        82 NQPIFAASFSATLRRG-------KIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVV  153 (544)
T ss_pred             HHHHHHHHhcCcccCc-------cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999999998533       34678899999999998877 4444454444444 4467888999999988888888


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000856          843 LVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQF  922 (1252)
Q Consensus       843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  922 (1252)
                      ++++.++..+..++..++..+...+..+.+.|+++|+++||+|+.++.+.+++.+..++..+...+..........+..+
T Consensus       154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (544)
T TIGR01842       154 LVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKY  233 (544)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77776666666677777778888999999999999999999999999999999999999888888888877777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCC
Q 000856          923 ALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEP 1002 (1252)
Q Consensus       923 ~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~ 1002 (1252)
                      +..+..++++++|.+++..|.++.|.++++..+......|+..+.....++..+..+.+|+.++++.+++..+.    .+
T Consensus       234 ~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~  309 (544)
T TIGR01842       234 FRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MP  309 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CC
Confidence            77778888899999999999999999999999999999999999999999999999999999999765442211    11


Q ss_pred             CCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHH
Q 000856         1003 VETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 1082 (1252)
Q Consensus      1003 ~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~ 1082 (1252)
                      ..+..+.|+++||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+
T Consensus       310 ~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~  388 (544)
T TIGR01842       310 LPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE  388 (544)
T ss_pred             CCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHH
Confidence            11234679999999999743 34699999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1083 SLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1083 ~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      .+|++++||||||.+|++|+|||+.++.+++++++++++++.++++++++++|+|+||.+|++|.+||||||||++||||
T Consensus       389 ~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARa  468 (544)
T TIGR01842       389 TFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARA  468 (544)
T ss_pred             HHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999998777789999999999999999999999999999999999999999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      ++++|+|||||||||+||++++..+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|++|+++
T Consensus       469 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  543 (544)
T TIGR01842       469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK  543 (544)
T ss_pred             HhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence            999999999999999999999999999999875 68999999999999999999999999999999999999863

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.9e-76  Score=643.99  Aligned_cols=504  Identities=33%  Similarity=0.433  Sum_probs=425.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           98 CFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGL  177 (1252)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~  177 (1252)
                      .+++-++.++|..+.+-...++-..+|+|+..+++.|+-.+ ++|+++..+....+.+. +....+.++...+.-+.++.
T Consensus       273 G~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~  350 (790)
T KOG0056|consen  273 GFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNR-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM  350 (790)
T ss_pred             cchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecc-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh
Confidence            45666777888888888899999999999999999999765 89999998888777666 44444444444444444444


Q ss_pred             HHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHH
Q 000856          178 VVGF-VSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQN  256 (1252)
Q Consensus       178 ~~~~-~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~  256 (1252)
                      +..+ .++|+.++++.++..+...+...+.-...+..++....+.+.-....|++-|.+|||-||+|+++.++|.++..+
T Consensus       351 vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~  430 (790)
T KOG0056|consen  351 VYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILK  430 (790)
T ss_pred             hhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHH
Confidence            4433 368888887776655544433333333333334444455555667789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          257 TLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGY  336 (1252)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~  336 (1252)
                      +.+..+|......+.......+..+..+....+..|+|..+.+++|+...+..+++...+|++-+...+..++++..-++
T Consensus       431 Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmE  510 (790)
T KOG0056|consen  431 YQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDME  510 (790)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHH
Confidence            99988887655555555444555555555555666778888999999877777788888899888888899999999999


Q ss_pred             HHHHHHccCCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 000856          337 KLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       337 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~  416 (1252)
                      ++++++++++++.+.+. ..+.....|.|+|+||+|.|+  +++++|+||||++.||+.+|+|||||+||||++++|.|+
T Consensus       511 nmfdllkee~eVvd~P~-a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf  587 (790)
T KOG0056|consen  511 NMFDLLKEEPEVVDLPG-APPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF  587 (790)
T ss_pred             HHHHHhhcCchhhcCCC-CCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHH
Confidence            99999999887654332 233344568899999999997  456799999999999999999999999999999999999


Q ss_pred             cCCCCcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCcccc
Q 000856          417 YDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQ  496 (1252)
Q Consensus       417 ~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  496 (1252)
                      ++.++|.|.+||+|+++.....+|++||.||||..|||+||..||.|++|.++++++.++++++++||.|..+|+|++|.
T Consensus       588 fdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~  667 (790)
T KOG0056|consen  588 FDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTR  667 (790)
T ss_pred             hhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeC
Q 000856          497 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ  576 (1252)
Q Consensus       497 ~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~  576 (1252)
                      +||+|-.|||||||||||||+++++|.|++|||+|||||..+++.|+.++.++..++|.|+|+||++++-+||.|+|+++
T Consensus       668 VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~  747 (790)
T KOG0056|consen  668 VGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISN  747 (790)
T ss_pred             hhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEecChHHHHhc-ccchHHHHHHHHhhc
Q 000856          577 GQVVETGTHEELIAK-AGAYASLIRFQEMVR  606 (1252)
Q Consensus       577 G~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~  606 (1252)
                      |+|+|.|+|+|++++ .|.|+++|+.|+.+.
T Consensus       748 G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~g  778 (790)
T KOG0056|consen  748 GRIVERGRHEELLKRDGGAYADMWQAQQAMG  778 (790)
T ss_pred             CeEeecCcHHHHHhccCCcHHHHHHHHHhcC
Confidence            999999999999988 799999998876654

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=3.4e-73  Score=701.51  Aligned_cols=525  Identities=25%  Similarity=0.315  Sum_probs=454.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           41 MIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLR  120 (1252)
Q Consensus        41 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR  120 (1252)
                      +.++++++++.++..+..+++++.++|.+......    ...+..+...+++++++..++.|++.+..+..+.++..++|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr   80 (529)
T TIGR02857         5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGEP----LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR   80 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666666666667777889999976422111    12233445555666777888999999999999999999999


Q ss_pred             HHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000856          121 KKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAF  200 (1252)
Q Consensus       121 ~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~  200 (1252)
                      .+++++++++|+.+|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++.+|++++
T Consensus        81 ~~l~~~l~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~  159 (529)
T TIGR02857        81 ERLLAAVAALGPGWLQGR-PSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI  159 (529)
T ss_pred             HHHHHHHHhCCchhhccC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            999999999999999864 8999999999999999999999899999998888888899999999999999888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          201 AGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIAC  280 (1252)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (1252)
                      +..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+.......+..++..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (529)
T TIGR02857       160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT  239 (529)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888999999999999999999999999999999999999988888877777766665555555555


Q ss_pred             HHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcCCC
Q 000856          281 MSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDE  360 (1252)
Q Consensus       281 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~  360 (1252)
                      +..+++++++++.+.+|.++.|.+++++.+......|+..+...+..+.++..+.+|+.++++.+++... ..  ....+
T Consensus       240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-~~--~~~~~  316 (529)
T TIGR02857       240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-KA--PVTAA  316 (529)
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-Cc--CCCCC
Confidence            5555555566777779999999988877776677778888888899999999999999999985432111 11  11111


Q ss_pred             CcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHh
Q 000856          361 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR  440 (1252)
Q Consensus       361 ~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~  440 (1252)
                      ..+.|+++||+|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+|+++++.+++|
T Consensus       317 ~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr  395 (529)
T TIGR02857       317 PAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR  395 (529)
T ss_pred             CCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence            23479999999999854 34689999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000856          441 DQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       441 ~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~  520 (1252)
                      ++++||+|+|++|++||+|||.++.++.++++++++++.++++++++.+|+|+||.+|++|.+||||||||++||||+++
T Consensus       396 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~  475 (529)
T TIGR02857       396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR  475 (529)
T ss_pred             hheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999988888999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEE
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVI  574 (1252)
Q Consensus       521 ~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l  574 (1252)
                      +|+++|||||||+||+++++.+.+.+.++.+++|+|+||||+++++.||+|++|
T Consensus       476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l  529 (529)
T TIGR02857       476 DAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL  529 (529)
T ss_pred             CCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence            999999999999999999999999999988899999999999999999999985

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=1e-72  Score=759.91  Aligned_cols=508  Identities=21%  Similarity=0.278  Sum_probs=434.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHH
Q 000856           88 LYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFI  167 (1252)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~  167 (1252)
                      .++++++++..++.++..++..+.+.+...++|.++++++++.|++||+.. ++|++++|+++|++.+++.+...+..++
T Consensus      1009 ~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnR~s~Di~~id~~l~~~~~~~~ 1087 (1522)
T TIGR00957      1009 SVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERT-PSGNLVNRFSKELDTVDSMIPPVIKMFM 1087 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777778888888888999999999999999999999999999965 7999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHH
Q 000856          168 HYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKAL  247 (1252)
Q Consensus       168 ~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~  247 (1252)
                      ..++.+++.++++++.+|.+++++++++++..++..++.+..+...+...+..+...+.+.|+++|+++||+|++|+++.
T Consensus      1088 ~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~ 1167 (1522)
T TIGR00957      1088 GSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFI 1167 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHH
Confidence            99999999988888888877666666666666666666666666666666677888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          248 NSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIR-NGVTDGGKAFTAIFSAIVGGMSLGQSFSNLG  326 (1252)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  326 (1252)
                      +++.+..+...+..+.......+......++..+   ++++.++..+. .+.+++|.+..++.+......++..+...+.
T Consensus      1168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~ 1244 (1522)
T TIGR00957      1168 HQSDLKVDENQKAYYPSIVANRWLAVRLECVGNC---IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSS 1244 (1522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998888777776555444443333333332222   22333444443 5789999988887777777788888888999


Q ss_pred             HHHHHHHHHHHHHHHHccCCCCCCCCCCC--CcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCC
Q 000856          327 AFSKGKAAGYKLMEIIKQKPSIIQDPTNG--RCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGS  404 (1252)
Q Consensus       327 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~--~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGs  404 (1252)
                      .+..+..|.+|+.++++.+++.+......  ....+.++.|+|+||+|+|+++. .++|+|+||+|++||++||||+|||
T Consensus      1245 ~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGs 1323 (1522)
T TIGR00957      1245 EMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGA 1323 (1522)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCC
Confidence            99999999999999998765432111111  11123457899999999997542 3699999999999999999999999


Q ss_pred             cHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHH
Q 000856          405 GKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHS  484 (1252)
Q Consensus       405 GKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~  484 (1252)
                      |||||+++|.|+++|++|+|.+||+|+++++.+.+|++|++|||||.||+|||||||.... ..++++++++++.+++++
T Consensus      1324 GKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~ 1402 (1522)
T TIGR00957      1324 GKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKT 1402 (1522)
T ss_pred             CHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHH
Confidence            9999999999999999999999999999999999999999999999999999999998322 578999999999999999


Q ss_pred             HHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccc
Q 000856          485 FITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLST  564 (1252)
Q Consensus       485 ~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~  564 (1252)
                      ++..+|+|+||.+|++|.+||||||||+||||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||+++
T Consensus      1403 ~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~t 1482 (1522)
T TIGR00957      1403 FVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNT 1482 (1522)
T ss_pred             HHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998889999999999999


Q ss_pred             hhccCEEEEEeCCEEEEecChHHHHhcccchHHHHHH
Q 000856          565 IRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRF  601 (1252)
Q Consensus       565 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~  601 (1252)
                      +.++|||+||++|+|+|.|+|+||+++++.|+++++.
T Consensus      1483 i~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957      1483 IMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred             HHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence            9999999999999999999999999998999988764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=9.4e-72  Score=689.07  Aligned_cols=529  Identities=23%  Similarity=0.271  Sum_probs=448.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           45 SLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYL  124 (1252)
Q Consensus        45 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~  124 (1252)
                      ++++++..+.....+++++.++|...... +.    ..+..+.+.++++.++..++.+++.++....+.++..++|.+++
T Consensus        12 ~~~~~~~~~~~l~~p~~~~~iid~~~~~~-~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~   86 (544)
T TIGR01842        12 GLFSFVINILMLAPPLYMLQVYDRVLTSG-SV----PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIF   86 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCC-ch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333446788888765321 11    12333444455556667788899999999999999999999999


Q ss_pred             HHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000856          125 EAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISE-KVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGG  203 (1252)
Q Consensus       125 ~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~  203 (1252)
                      ++++++|+.      ..+...+++++|++.+++++.. .+..++..++.++ .++++++++|.+++++++.+|+++++..
T Consensus        87 ~~ll~~~~~------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~  159 (544)
T TIGR01842        87 AASFSATLR------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLAL  159 (544)
T ss_pred             HHHhcCccc------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            999999983      2356788899999999998877 4555555555544 4467889999999988888888877777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          204 LYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSW  283 (1252)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (1252)
                      ++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+..+....+..++..+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (544)
T TIGR01842       160 LNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQ  239 (544)
T ss_pred             HhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888888888899999999999999999999999999999999999999888888777777776666666666666


Q ss_pred             HHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcCCCCcc
Q 000856          284 ALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNG  363 (1252)
Q Consensus       284 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~  363 (1252)
                      ++++++|++++.+|.+|+|.+++++.+......|+..+...+..+.+++.+.+|+.++++.+++.+. .   ...+...+
T Consensus       240 ~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~-~---~~~~~~~~  315 (544)
T TIGR01842       240 SLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP-A---MPLPEPEG  315 (544)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC-C---CCCCCCCC
Confidence            7788899999999999999999888777777789999999999999999999999999986544211 1   11112235


Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .++++|++|+|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.+.+|+++
T Consensus       316 ~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i  394 (544)
T TIGR01842       316 HLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI  394 (544)
T ss_pred             eEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence            69999999999743 34689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 000856          444 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK  523 (1252)
Q Consensus       444 ~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~  523 (1252)
                      +||||+|++|++|++||+.++.++.++++++++++.++++++++.+|+|++|.+|++|.+||||||||++||||++++|+
T Consensus       395 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~  474 (544)
T TIGR01842       395 GYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK  474 (544)
T ss_pred             EEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999998777788899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHh
Q 000856          524 ILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       524 illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      ++|||||||+||+++++.+.+.+.++. +++|+|+||||++.+..||+|++|++|++++.|+|+|+++
T Consensus       475 ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~  542 (544)
T TIGR01842       475 LVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA  542 (544)
T ss_pred             EEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence            999999999999999999999999885 6899999999999988899999999999999999999864

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-74  Score=717.91  Aligned_cols=500  Identities=26%  Similarity=0.393  Sum_probs=369.4

Q ss_pred             cEEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCcccc----------
Q 000856          364 NIEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK----------  432 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~----------  432 (1252)
                      .|+++|++++|++.. +.++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.          
T Consensus        12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~   91 (623)
T PRK10261         12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS   91 (623)
T ss_pred             eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence            589999999996322 246999999999999999999999999999999999999999999999987542          


Q ss_pred             CCCHH---HHh-hhceEEccCC--CCchh-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHhhCCCCcc---ccccC
Q 000856          433 TLQLR---WLR-DQIGLVNQEP--ALFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYS---TQVGE  499 (1252)
Q Consensus       433 ~~~~~---~~~-~~i~~v~Q~~--~l~~~-tv~~ni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~  499 (1252)
                      +.+..   .+| ++|+||+|+|  .+++. ||+||+.++..   .....+..     ..+.+.++.+  |+.   ....+
T Consensus        92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~  164 (623)
T PRK10261         92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM-----VEAKRMLDQV--RIPEAQTILSR  164 (623)
T ss_pred             cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChhhHHhC
Confidence            12222   233 4799999998  56664 99999987521   11111111     1122334444  552   34577


Q ss_pred             CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-C-CCeEEEEccCccchhc-cCEEEEEeC
Q 000856          500 RGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQ  576 (1252)
Q Consensus       500 ~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~~  576 (1252)
                      ...+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.++++. + |+|+|+|||+++.+.. ||||++|++
T Consensus       165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~  244 (623)
T PRK10261        165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ  244 (623)
T ss_pred             CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence            888999999999999999999999999999999999999999999999985 3 8999999999999866 899999999


Q ss_pred             CEEEEecChHHHHhccc-chHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCcccc
Q 000856          577 GQVVETGTHEELIAKAG-AYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIE  655 (1252)
Q Consensus       577 G~i~~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  655 (1252)
                      |++++.|+++++..... .|..-..                        ...+                           
T Consensus       245 G~i~~~g~~~~~~~~~~~~~~~~l~------------------------~~~~---------------------------  273 (623)
T PRK10261        245 GEAVETGSVEQIFHAPQHPYTRALL------------------------AAVP---------------------------  273 (623)
T ss_pred             CeecccCCHHHhhcCCCChhhhhhh------------------------hccC---------------------------
Confidence            99999999877643210 0000000                        0000                           


Q ss_pred             cccccccccCCCCCchHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHH
Q 000856          656 MVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYI  735 (1252)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  735 (1252)
                         .....                                                      .. .              
T Consensus       274 ---~~~~~------------------------------------------------------~~-~--------------  281 (623)
T PRK10261        274 ---QLGAM------------------------------------------------------KG-L--------------  281 (623)
T ss_pred             ---ccccc------------------------------------------------------cc-c--------------
Confidence               00000                                                      00 0              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHH
Q 000856          736 GAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNM  815 (1252)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~  815 (1252)
                                                           ..+ .-+..    .                             
T Consensus       282 -------------------------------------~~~-~~~~~----~-----------------------------  290 (623)
T PRK10261        282 -------------------------------------DYP-RRFPL----I-----------------------------  290 (623)
T ss_pred             -------------------------------------cCC-ccccc----c-----------------------------
Confidence                                                 000 00000    0                             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHH
Q 000856          816 TSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLF  895 (1252)
Q Consensus       816 ~~~~~~~i~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~  895 (1252)
                                                                                                      
T Consensus       291 --------------------------------------------------------------------------------  290 (623)
T PRK10261        291 --------------------------------------------------------------------------------  290 (623)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          896 CHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIR  975 (1252)
Q Consensus       896 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  975 (1252)
                                                                                                      
T Consensus       291 --------------------------------------------------------------------------------  290 (623)
T PRK10261        291 --------------------------------------------------------------------------------  290 (623)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCC--------CccceeeeeEEEeCCcEEEEEcCC
Q 000856          976 GGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRP--------DVVVFKDFNLRIRAGQSQALVGAS 1047 (1252)
Q Consensus       976 ~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~--------~~~vL~~isl~I~~Ge~vaIvG~S 1047 (1252)
                               .................  .....-++++||+++|+.+.        ..++|+|+||+|++||++||+|+|
T Consensus       291 ---------~~~~~~~~~~~~~~~~~--~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~n  359 (623)
T PRK10261        291 ---------SLEHPAKQEPPIEQDTV--VDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGES  359 (623)
T ss_pred             ---------ccccccccCcccccccc--cCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCC
Confidence                     00000000000000000  00112499999999996311        236999999999999999999999


Q ss_pred             CCChHHHHHHHhccCCCCCceEEECCcccCCCCHH---HHhcccEEEccccc--cCc-ccHHHHhccCC--CCC-C----
Q 000856         1048 GSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLRLKIGLVQQEPA--LFA-ASIFDNIAYGK--EGA-T---- 1114 (1252)
Q Consensus      1048 GSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~---~lR~~i~~VpQd~~--lf~-gTIreNl~~~~--~~~-~---- 1114 (1252)
                      |||||||+++|+|+.+|++|+|.++|.++...+..   .+|++|+||||+|.  ++. .|+++|+.++.  ... .    
T Consensus       360 GsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~  439 (623)
T PRK10261        360 GSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAA  439 (623)
T ss_pred             CCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHH
Confidence            99999999999999999999999999999877643   46788999999983  654 69999997531  111 1    


Q ss_pred             HHHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHH
Q 000856         1115 EAEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER 1193 (1252)
Q Consensus      1115 deei~~al~~~~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~ 1193 (1252)
                      .+++.++++.+++. +.....       +    ..||||||||++|||||+.+|++||||||||+||+.+...+.+.|++
T Consensus       440 ~~~~~~~L~~~gL~~~~~~~~-------~----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~  508 (623)
T PRK10261        440 AARVAWLLERVGLLPEHAWRY-------P----HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD  508 (623)
T ss_pred             HHHHHHHHHHcCCCHHHhhCC-------c----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            24566777777774 333322       2    46999999999999999999999999999999999999999999988


Q ss_pred             HcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcCCCchhHH-HHH
Q 000856         1194 LMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYSR-LLQ 1246 (1252)
Q Consensus      1194 ~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~-l~~ 1246 (1252)
                      +.+  +.|||+|||+++.+.. ||||++|++|+|++.|++++++.++...|.+ ++.
T Consensus       509 l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~  565 (623)
T PRK10261        509 LQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMA  565 (623)
T ss_pred             HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHh
Confidence            753  7899999999999865 8999999999999999999998776666754 443

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-74  Score=707.01  Aligned_cols=459  Identities=23%  Similarity=0.420  Sum_probs=358.3

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC--CCcEEEECCccccCCCHHH-Hh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP--NAGHVLLDNVDIKTLQLRW-LR  440 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~~  440 (1252)
                      .|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|  ++|+|.++|.++...+... ++
T Consensus         5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~   81 (506)
T PRK13549          5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER   81 (506)
T ss_pred             eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence            4899999999963   3599999999999999999999999999999999999996  8999999999997766543 45


Q ss_pred             hhceEEccCCCCchh-cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 000856          441 DQIGLVNQEPALFAT-TILENILYGKPE-----ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI  514 (1252)
Q Consensus       441 ~~i~~v~Q~~~l~~~-tv~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~l  514 (1252)
                      ++++||+|++.++.. |++||+.++...     ...++...     .+.+.++.+  |+.........+||||||||++|
T Consensus        82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l  154 (506)
T PRK13549         82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI  154 (506)
T ss_pred             CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence            679999999988865 999999886421     11111111     123445554  66666677888999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhcc
Q 000856          515 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       515 ARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      ||||+.+|++|||||||++||+.++..+.+.|.++. +|+|+|++||+++.+.. ||+|++|++|+++..|+.+++....
T Consensus       155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~  234 (506)
T PRK13549        155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTEDD  234 (506)
T ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHHH
Confidence            999999999999999999999999999999999874 48899999999999876 8999999999999877543221000


Q ss_pred             cchHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCcccccccccccccCCCCCchH
Q 000856          593 GAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGY  672 (1252)
Q Consensus       593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (1252)
                           .                                                                          
T Consensus       235 -----~--------------------------------------------------------------------------  235 (506)
T PRK13549        235 -----I--------------------------------------------------------------------------  235 (506)
T ss_pred             -----H--------------------------------------------------------------------------
Confidence                 0                                                                          


Q ss_pred             HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          673 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF  752 (1252)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  752 (1252)
                                                             +..+                                     
T Consensus       236 ---------------------------------------~~~~-------------------------------------  239 (506)
T PRK13549        236 ---------------------------------------ITMM-------------------------------------  239 (506)
T ss_pred             ---------------------------------------HHHh-------------------------------------
Confidence                                                   0000                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          753 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV  832 (1252)
Q Consensus       753 ~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  832 (1252)
                                         ...+..                                                       
T Consensus       240 -------------------~~~~~~-------------------------------------------------------  245 (506)
T PRK13549        240 -------------------VGRELT-------------------------------------------------------  245 (506)
T ss_pred             -------------------hCcCcc-------------------------------------------------------
Confidence                               000000                                                       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000856          833 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT  912 (1252)
Q Consensus       833 ~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~  912 (1252)
                                                                                                      
T Consensus       246 --------------------------------------------------------------------------------  245 (506)
T PRK13549        246 --------------------------------------------------------------------------------  245 (506)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000856          913 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR  992 (1252)
Q Consensus       913 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~  992 (1252)
                                                                                                 ...+.
T Consensus       246 ---------------------------------------------------------------------------~~~~~  250 (506)
T PRK13549        246 ---------------------------------------------------------------------------ALYPR  250 (506)
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       00000


Q ss_pred             CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-CCCceEEE
Q 000856          993 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-PTAGKVMI 1071 (1252)
Q Consensus       993 ~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~-p~~G~I~i 1071 (1252)
                      ..+  +      +...-|+++|++++|+...+.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+
T Consensus       251 ~~~--~------~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~  322 (506)
T PRK13549        251 EPH--T------IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFI  322 (506)
T ss_pred             ccc--C------CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEE
Confidence            000  0      01124899999999953223469999999999999999999999999999999999999 59999999


Q ss_pred             CCcccCCCCH-HHHhcccEEEcccc---ccC-cccHHHHhccCCC----C---CCH----HHHHHHHHHcCchhhHhhCC
Q 000856         1072 DGKDIRRLNL-KSLRLKIGLVQQEP---ALF-AASIFDNIAYGKE----G---ATE----AEVVEAARAANVHGFVSALP 1135 (1252)
Q Consensus      1072 dG~di~~~~~-~~lR~~i~~VpQd~---~lf-~gTIreNl~~~~~----~---~~d----eei~~al~~~~l~~~i~~lp 1135 (1252)
                      +|.++...+. +.+|++++||||++   .+| ..|+.||+.++..    .   .+.    +++.++++..++.+      
T Consensus       323 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------  396 (506)
T PRK13549        323 DGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT------  396 (506)
T ss_pred             CCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC------
Confidence            9999875543 44677899999996   355 4699999976421    0   111    23445555555421      


Q ss_pred             CcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-c
Q 000856         1136 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-V 1213 (1252)
Q Consensus      1136 ~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~ 1213 (1252)
                      +-.+.++    ..||||||||++||||++.+|+||||||||++||+.+.+.+++.|+++. +++|||+|||+++.+.. |
T Consensus       397 ~~~~~~~----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~  472 (506)
T PRK13549        397 ASPELAI----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLS  472 (506)
T ss_pred             CCccccc----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhC
Confidence            1123333    4699999999999999999999999999999999999999999998874 48899999999998865 8


Q ss_pred             CEEEEEeCCEEEEecChhhhh
Q 000856         1214 DCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1214 DrI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      |++++|++|+++..|+++++.
T Consensus       473 d~v~~l~~G~i~~~~~~~~~~  493 (506)
T PRK13549        473 DRVLVMHEGKLKGDLINHNLT  493 (506)
T ss_pred             CEEEEEECCEEEEEeccccCC
Confidence            999999999999999988764

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=2.4e-71  Score=744.28  Aligned_cols=507  Identities=21%  Similarity=0.263  Sum_probs=401.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHH
Q 000856           86 YALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGN  165 (1252)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~  165 (1252)
                      +.+++++++++..++.+++.++..+.+.+...++|.+++++++++|++||+.. ++|++++|+++|++.+++.+...+..
T Consensus       955 ~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~-~~G~IlnR~s~Di~~id~~l~~~~~~ 1033 (1622)
T PLN03130        955 YNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTN-PLGRIINRFAKDLGDIDRNVAVFVNM 1033 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccC-CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456667777788889999999999999999999999999999999999965 79999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchH
Q 000856          166 FIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAF-AGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGES  244 (1252)
Q Consensus       166 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~  244 (1252)
                      ++..++.+++.++++++++|.. ++.++.++++++ +..++.+..++..+......+...+.+.|+++|+++||+|++++
T Consensus      1034 ~~~~~~~~i~~~i~i~~~~~~~-~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~ 1112 (1622)
T PLN03130       1034 FLGQIFQLLSTFVLIGIVSTIS-LWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 1112 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHH
Confidence            9999988888888888887733 322222222222 22333344444444444556677899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc---------cCHHHHHHHHHHHHHHH
Q 000856          245 KALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGV---------TDGGKAFTAIFSAIVGG  315 (1252)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---------~~~~~~~~~~~~~~~~~  315 (1252)
                      ++.+++.+..+...+..+.......+......++   ..+++++.+...+..+.         .+.|.+++   +.+...
T Consensus      1113 ~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~---~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls---~~~~~~ 1186 (1622)
T PLN03130       1113 RMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETL---GGLMIWLTASFAVMQNGRAENQAAFASTMGLLLS---YALNIT 1186 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHcccccccchhhhHHHHHHHH---HHHHHH
Confidence            8877766655554433222111111111111111   11122222333343321         12232222   223333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCC--CCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCC
Q 000856          316 MSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPT--NGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAG  393 (1252)
Q Consensus       316 ~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~--~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g  393 (1252)
                      .++..+......+..+..|.+|+.++++.+++.+....  ......+..+.|+|+||+|+|++. ..++|+|+||+|++|
T Consensus      1187 ~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~G 1265 (1622)
T PLN03130       1187 SLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPS 1265 (1622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCC
Confidence            44555556667778999999999999987655321111  111112345789999999999643 246999999999999


Q ss_pred             CEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHH
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEV  473 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~  473 (1252)
                      |++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++|++|||||.||+|||||||.++. ..+++++
T Consensus      1266 ekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei 1344 (1622)
T PLN03130       1266 EKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADL 1344 (1622)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999876 4689999


Q ss_pred             HHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCC
Q 000856          474 EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR  553 (1252)
Q Consensus       474 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~  553 (1252)
                      +++++.+++++++..+|+|+||.+|++|.+||||||||+||||||+++|+|||||||||+||+++++.+++.|++..+++
T Consensus      1345 ~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~ 1424 (1622)
T PLN03130       1345 WESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 1424 (1622)
T ss_pred             HHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             eEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhc-ccchHHHHHHH
Q 000856          554 TTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK-AGAYASLIRFQ  602 (1252)
Q Consensus       554 tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~  602 (1252)
                      |+|+||||++++.+||||+||++|+|+|.|+|+||+++ ++.|+++++..
T Consensus      1425 TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130       1425 TMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred             EEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHc
Confidence            99999999999999999999999999999999999987 58899888654

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=6.9e-74  Score=704.94  Aligned_cols=469  Identities=27%  Similarity=0.448  Sum_probs=360.8

Q ss_pred             cEEEEeEEEECCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccccCCCHH
Q 000856          364 NIEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTLQLR  437 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~~~~  437 (1252)
                      .++++|++++|++. ....+|+|+||++++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++...+..
T Consensus         5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~   84 (529)
T PRK15134          5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ   84 (529)
T ss_pred             eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence            48999999999632 124699999999999999999999999999999999999986     799999999998776543


Q ss_pred             ---HHh-hhceEEccCCC--Cch-hcHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHhhCCCCccc---cccCCCCCC
Q 000856          438 ---WLR-DQIGLVNQEPA--LFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYST---QVGERGVQL  504 (1252)
Q Consensus       438 ---~~~-~~i~~v~Q~~~--l~~-~tv~~ni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~g~~L  504 (1252)
                         .+| ++++|++|++.  +++ .|+++|+.++..   .....+..     ..+.+.++.+  |+..   ...+...+|
T Consensus        85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~~L  157 (529)
T PRK15134         85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAAR-----GEILNCLDRV--GIRQAAKRLTDYPHQL  157 (529)
T ss_pred             HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChHHHHhhCCccc
Confidence               233 57999999985  444 489999864210   11111111     1122334443  4432   346678899


Q ss_pred             ChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEE
Q 000856          505 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVE  581 (1252)
Q Consensus       505 SgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~  581 (1252)
                      ||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+++.  .|+|+|+|||+++.+.. ||||++|++|++++
T Consensus       158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~  237 (529)
T PRK15134        158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE  237 (529)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999999874  37999999999999876 89999999999999


Q ss_pred             ecChHHHHhcccchHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCcccccccccc
Q 000856          582 TGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAE  661 (1252)
Q Consensus       582 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  661 (1252)
                      .|+++++.....                                                          .         
T Consensus       238 ~g~~~~~~~~~~----------------------------------------------------------~---------  250 (529)
T PRK15134        238 QNRAATLFSAPT----------------------------------------------------------H---------  250 (529)
T ss_pred             eCCHHHHhhCCC----------------------------------------------------------C---------
Confidence            888766532100                                                          0         


Q ss_pred             cccCCCCCchHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHH
Q 000856          662 TDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYA  741 (1252)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  741 (1252)
                                .+.+                                                                  
T Consensus       251 ----------~~~~------------------------------------------------------------------  254 (529)
T PRK15134        251 ----------PYTQ------------------------------------------------------------------  254 (529)
T ss_pred             ----------HHHH------------------------------------------------------------------
Confidence                      0000                                                                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          742 VVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTS  821 (1252)
Q Consensus       742 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~  821 (1252)
                                              .+++    .+       +                                      
T Consensus       255 ------------------------~~~~----~~-------~--------------------------------------  261 (529)
T PRK15134        255 ------------------------KLLN----SE-------P--------------------------------------  261 (529)
T ss_pred             ------------------------HHHH----hC-------c--------------------------------------
Confidence                                    0000    00       0                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHh
Q 000856          822 FIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRV  901 (1252)
Q Consensus       822 ~i~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~  901 (1252)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (529)
T PRK15134        262 --------------------------------------------------------------------------------  261 (529)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          902 PQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVG  981 (1252)
Q Consensus       902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  981 (1252)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (529)
T PRK15134        262 --------------------------------------------------------------------------------  261 (529)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCC--------CCccceeeeeEEEeCCcEEEEEcCCCCChHH
Q 000856          982 SVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSR--------PDVVVFKDFNLRIRAGQSQALVGASGSGKSS 1053 (1252)
Q Consensus       982 ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~--------~~~~vL~~isl~I~~Ge~vaIvG~SGSGKST 1053 (1252)
                            ...+. .+. .      +...-|+++|++++|+..        .+.++|+|+||+|++||++||+|+|||||||
T Consensus       262 ------~~~~~-~~~-~------~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKST  327 (529)
T PRK15134        262 ------SGDPV-PLP-E------PASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKST  327 (529)
T ss_pred             ------ccccc-ccC-C------CCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHH
Confidence                  00000 000 0      001148999999999521        1246999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCceEEECCcccCCCCHHH---HhcccEEEcccc--ccCc-ccHHHHhccCCC----CCC----HHHHH
Q 000856         1054 VIALIERFYDPTAGKVMIDGKDIRRLNLKS---LRLKIGLVQQEP--ALFA-ASIFDNIAYGKE----GAT----EAEVV 1119 (1252)
Q Consensus      1054 Ll~lL~rl~~p~~G~I~idG~di~~~~~~~---lR~~i~~VpQd~--~lf~-gTIreNl~~~~~----~~~----deei~ 1119 (1252)
                      |+++|+|++ |++|+|.+||.++...+...   +|++++||||++  .+|. .|++||+.++..    ...    ++.+.
T Consensus       328 Llk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~  406 (529)
T PRK15134        328 TGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVI  406 (529)
T ss_pred             HHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHH
Confidence            999999998 58999999999998766543   478899999998  3665 599999976411    011    23456


Q ss_pred             HHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--C
Q 000856         1120 EAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--R 1196 (1252)
Q Consensus      1120 ~al~~~~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~ 1196 (1252)
                      ++++..++. +....           ....||||||||++|||||+.+|++|||||||++||+.+...+++.|++..  .
T Consensus       407 ~~l~~~~l~~~~~~~-----------~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  475 (529)
T PRK15134        407 AVMEEVGLDPETRHR-----------YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKH  475 (529)
T ss_pred             HHHHHcCCCHHHHhc-----------CCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhh
Confidence            667777764 22222           234699999999999999999999999999999999999999999999875  2


Q ss_pred             CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcCCCchh
Q 000856         1197 GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241 (1252)
Q Consensus      1197 ~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~~~g~y 1241 (1252)
                      ++|||+|||+++.+.. ||+|++|++|+|++.|+++++++.+...|
T Consensus       476 ~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~  521 (529)
T PRK15134        476 QLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEY  521 (529)
T ss_pred             CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCCCChH
Confidence            7899999999998865 89999999999999999999987644444

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.5e-73  Score=696.33  Aligned_cols=456  Identities=21%  Similarity=0.379  Sum_probs=355.3

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHH-Hhhh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQ  442 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~  442 (1252)
                      .++++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .+++
T Consensus         5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~   81 (510)
T PRK09700          5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG   81 (510)
T ss_pred             eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence            4899999999963   35899999999999999999999999999999999999999999999999998776554 3457


Q ss_pred             ceEEccCCCCchh-cHHHHHhcCCCCC---------CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHH
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPEA---------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI  512 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-tv~~ni~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv  512 (1252)
                      ++||+|++.++.. |++||+.++....         ...+..     ..+.+.++.+  |+....++...+||||||||+
T Consensus        82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv  154 (510)
T PRK09700         82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR-----VRAAMMLLRV--GLKVDLDEKVANLSISHKQML  154 (510)
T ss_pred             eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence            9999999988865 9999998763210         111111     1123344444  666566778889999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          513 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       513 ~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      +|||||+.+|++|||||||++||+.++..+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+++++..
T Consensus       155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  234 (510)
T PRK09700        155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN  234 (510)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence            99999999999999999999999999999999999885 48999999999999976 89999999999998876554311


Q ss_pred             cccchHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCcccccccccccccCCCCCc
Q 000856          591 KAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPD  670 (1252)
Q Consensus       591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (1252)
                      ..     ...                                                                      
T Consensus       235 ~~-----~~~----------------------------------------------------------------------  239 (510)
T PRK09700        235 DD-----IVR----------------------------------------------------------------------  239 (510)
T ss_pred             HH-----HHH----------------------------------------------------------------------
Confidence            00     000                                                                      


Q ss_pred             hHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          671 GYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHY  750 (1252)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  750 (1252)
                                                                 ..                                   
T Consensus       240 -------------------------------------------~~-----------------------------------  241 (510)
T PRK09700        240 -------------------------------------------LM-----------------------------------  241 (510)
T ss_pred             -------------------------------------------Hh-----------------------------------
Confidence                                                       00                                   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          751 FFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEW  830 (1252)
Q Consensus       751 ~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  830 (1252)
                                                  +.....      .+                                      
T Consensus       242 ----------------------------~~~~~~------~~--------------------------------------  249 (510)
T PRK09700        242 ----------------------------VGRELQ------NR--------------------------------------  249 (510)
T ss_pred             ----------------------------cCCCcc------cc--------------------------------------
Confidence                                        000000      00                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHH
Q 000856          831 RVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRS  910 (1252)
Q Consensus       831 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~  910 (1252)
                                                                                                      
T Consensus       250 --------------------------------------------------------------------------------  249 (510)
T PRK09700        250 --------------------------------------------------------------------------------  249 (510)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000856          911 LTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRS  990 (1252)
Q Consensus       911 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~  990 (1252)
                                                                                                 .....
T Consensus       250 ---------------------------------------------------------------------------~~~~~  254 (510)
T PRK09700        250 ---------------------------------------------------------------------------FNAMK  254 (510)
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       00000


Q ss_pred             CCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEE
Q 000856          991 TRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 1070 (1252)
Q Consensus       991 ~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~ 1070 (1252)
                      +.  +..+      ..+..++++|+++.|.     .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus       255 ~~--~~~~------~~~~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~  321 (510)
T PRK09700        255 EN--VSNL------AHETVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIR  321 (510)
T ss_pred             cc--cccC------CCCcEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE
Confidence            00  0000      0012499999998762     289999999999999999999999999999999999999999999


Q ss_pred             ECCcccCCCCH-HHHhcccEEEcccc---ccCc-ccHHHHhccCCCC-----------CC----HHHHHHHHHHcCchhh
Q 000856         1071 IDGKDIRRLNL-KSLRLKIGLVQQEP---ALFA-ASIFDNIAYGKEG-----------AT----EAEVVEAARAANVHGF 1130 (1252)
Q Consensus      1071 idG~di~~~~~-~~lR~~i~~VpQd~---~lf~-gTIreNl~~~~~~-----------~~----deei~~al~~~~l~~~ 1130 (1252)
                      ++|.++...+. ..+|++++||||++   .+|. -|+++|+.++...           ..    .+++.++++..++.  
T Consensus       322 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--  399 (510)
T PRK09700        322 LNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK--  399 (510)
T ss_pred             ECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC--
Confidence            99999876543 45678899999984   4665 5999999864210           01    12344555555542  


Q ss_pred             HhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchh
Q 000856         1131 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLST 1209 (1252)
Q Consensus      1131 i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~t 1209 (1252)
                          ++..+.++    ..||||||||++|||||+++|+||||||||++||+.+...+.+.|+++. +++|||+|||+++.
T Consensus       400 ----~~~~~~~~----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~  471 (510)
T PRK09700        400 ----CHSVNQNI----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPE  471 (510)
T ss_pred             ----CCCccCcc----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence                02234444    3599999999999999999999999999999999999999999998864 57899999999998


Q ss_pred             hh-ccCEEEEEeCCEEEEecChhh
Q 000856         1210 IR-GVDCIGVVQDGRIVEQGSHSE 1232 (1252)
Q Consensus      1210 i~-~~DrI~vl~~G~Ive~G~~~e 1232 (1252)
                      +. .||+|++|++|++++.+++.+
T Consensus       472 ~~~~~d~i~~l~~G~i~~~~~~~~  495 (510)
T PRK09700        472 IITVCDRIAVFCEGRLTQILTNRD  495 (510)
T ss_pred             HHhhCCEEEEEECCEEEEEecCcc
Confidence            75 589999999999999887633

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=2.6e-70  Score=733.67  Aligned_cols=509  Identities=20%  Similarity=0.239  Sum_probs=414.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000856           91 VYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYL  170 (1252)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~  170 (1252)
                      ++++++..++.++..+.....+.+...++|.++++++++.|+.||+.. ++|+++||+++|++.+++.+...+..++..+
T Consensus      1005 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~-~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~ 1083 (1560)
T PTZ00243       1005 LGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTT-PLGRILNRFSRDIDILDNTLPMSYLYLLQCL 1083 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCC-CccHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            333444444445555555556677788999999999999999999965 7999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHH
Q 000856          171 STFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSY  250 (1252)
Q Consensus       171 ~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~  250 (1252)
                      +.+++.++++++.+|.+.++++.++.+...+..++.+..++..+......+...+.+.|++.|+++||+|+.++.+.+++
T Consensus      1084 ~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~ 1163 (1560)
T PTZ00243       1084 FSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEA 1163 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHH
Confidence            99998888888888854433332222333344455555566655566677788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          251 SDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGV--FIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAF  328 (1252)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  328 (1252)
                      .+..++..+..++......+......++..+..+++.+++..  ....+.+++|.+..++.+......++..+...+..+
T Consensus      1164 ~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~l 1243 (1560)
T PTZ00243       1164 LRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATV 1243 (1560)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888777666554444444433344433333333333333  223445678876666666666667888888888999


Q ss_pred             HHHHHHHHHHHHHHccCCCCCCC--------------------------CCCCC---cCCCCcccEEEEeEEEECCCCCC
Q 000856          329 SKGKAAGYKLMEIIKQKPSIIQD--------------------------PTNGR---CLDEVNGNIEFKNVTFSYPSRPD  379 (1252)
Q Consensus       329 ~~~~~s~~ri~~~l~~~~~~~~~--------------------------~~~~~---~~~~~~~~i~~~~v~~~y~~~~~  379 (1252)
                      ..+..|.+|+.++++..++.+..                          +....   +..+..+.|+|+||+|+|++. .
T Consensus      1244 e~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~ 1322 (1560)
T PTZ00243       1244 EADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-L 1322 (1560)
T ss_pred             HHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-C
Confidence            99999999999999743321100                          00000   011234679999999999753 3


Q ss_pred             CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHH
Q 000856          380 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILE  459 (1252)
Q Consensus       380 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~  459 (1252)
                      .++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++|+||||||.||++||||
T Consensus      1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIre 1402 (1560)
T PTZ00243       1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQ 1402 (1560)
T ss_pred             CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHH
Confidence            45999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC-CCEEEEeCCCCCCChHh
Q 000856          460 NILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN-PKILLLDEATSALDAGS  538 (1252)
Q Consensus       460 ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~-~~illlDEpts~LD~~~  538 (1252)
                      ||..+. ..++++++++++.+++++++..+|+|+||.+|++|.+||||||||++|||||+++ |+|||||||||+||+++
T Consensus      1403 NIdp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~t 1481 (1560)
T PTZ00243       1403 NVDPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPAL 1481 (1560)
T ss_pred             HhCccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHH
Confidence            998653 5789999999999999999999999999999999999999999999999999996 89999999999999999


Q ss_pred             HHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhc-ccchHHHHHHH
Q 000856          539 ESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK-AGAYASLIRFQ  602 (1252)
Q Consensus       539 ~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~  602 (1252)
                      ++.+++.|++..+++|+|+||||++++.+||+|+||++|+|++.|+|+||+++ ++.|+++++.+
T Consensus      1482 e~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243       1482 DRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred             HHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence            99999999998889999999999999999999999999999999999999975 78899887654

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=5.1e-73  Score=692.63  Aligned_cols=451  Identities=24%  Similarity=0.387  Sum_probs=352.8

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHH-Hhhh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQ  442 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~  442 (1252)
                      .|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus         4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~   80 (501)
T PRK10762          4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG   80 (501)
T ss_pred             eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence            4899999999963   35899999999999999999999999999999999999999999999999986654433 3567


Q ss_pred             ceEEccCCCCchh-cHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPEA------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA  515 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-tv~~ni~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lA  515 (1252)
                      ++|++|++.++.. |++||+.++....      ...+...     .+.+.++.+  |+.........+||||||||++||
T Consensus        81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la  153 (501)
T PRK10762         81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA  153 (501)
T ss_pred             EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence            9999999988865 9999999864211      1111111     123344444  666556777889999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhccc
Q 000856          516 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKAG  593 (1252)
Q Consensus       516 Ral~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~  593 (1252)
                      |||+.+|++|||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.... 
T Consensus       154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~-  232 (501)
T PRK10762        154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTEDS-  232 (501)
T ss_pred             HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHHH-
Confidence            99999999999999999999999999999999874 47899999999999876 8999999999998876543220000 


Q ss_pred             chHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCcccccccccccccCCCCCchHH
Q 000856          594 AYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYF  673 (1252)
Q Consensus       594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  673 (1252)
                          +                                                                           
T Consensus       233 ----~---------------------------------------------------------------------------  233 (501)
T PRK10762        233 ----L---------------------------------------------------------------------------  233 (501)
T ss_pred             ----H---------------------------------------------------------------------------
Confidence                0                                                                           


Q ss_pred             HHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          674 LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFS  753 (1252)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  753 (1252)
                                                            ....                                      
T Consensus       234 --------------------------------------~~~~--------------------------------------  237 (501)
T PRK10762        234 --------------------------------------IEMM--------------------------------------  237 (501)
T ss_pred             --------------------------------------HHHh--------------------------------------
Confidence                                                  0000                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          754 IMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVS  833 (1252)
Q Consensus       754 ~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~  833 (1252)
                                               +.. .                                                  
T Consensus       238 -------------------------~~~-~--------------------------------------------------  241 (501)
T PRK10762        238 -------------------------VGR-K--------------------------------------------------  241 (501)
T ss_pred             -------------------------cCC-C--------------------------------------------------
Confidence                                     000 0                                                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000856          834 LLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTA  913 (1252)
Q Consensus       834 l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  913 (1252)
                                                                                                      
T Consensus       242 --------------------------------------------------------------------------------  241 (501)
T PRK10762        242 --------------------------------------------------------------------------------  241 (501)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 000856          914 GILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRI  993 (1252)
Q Consensus       914 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~  993 (1252)
                                                                                               ....   
T Consensus       242 -------------------------------------------------------------------------~~~~---  245 (501)
T PRK10762        242 -------------------------------------------------------------------------LEDQ---  245 (501)
T ss_pred             -------------------------------------------------------------------------cccc---
Confidence                                                                                     0000   


Q ss_pred             CCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECC
Q 000856          994 DPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073 (1252)
Q Consensus       994 ~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG 1073 (1252)
                      .+..+ .   .+.+.-++++|+++        ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|
T Consensus       246 ~~~~~-~---~~~~~~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g  313 (501)
T PRK10762        246 YPRLD-K---APGEVRLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG  313 (501)
T ss_pred             ccccc-c---CCCCcEEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence            00000 0   00012489999984        269999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCH-HHHhcccEEEcccc---ccC-cccHHHHhccCCC----C----CC----HHHHHHHHHHcCchhhHhhCCC
Q 000856         1074 KDIRRLNL-KSLRLKIGLVQQEP---ALF-AASIFDNIAYGKE----G----AT----EAEVVEAARAANVHGFVSALPN 1136 (1252)
Q Consensus      1074 ~di~~~~~-~~lR~~i~~VpQd~---~lf-~gTIreNl~~~~~----~----~~----deei~~al~~~~l~~~i~~lp~ 1136 (1252)
                      .++...+. +.+|++++||||++   .+| ..|+++|+.++..    .    .+    ++++.++++..++.+      +
T Consensus       314 ~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~  387 (501)
T PRK10762        314 HEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT------P  387 (501)
T ss_pred             EECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCC------C
Confidence            99977665 34678899999997   344 5799999976421    0    11    223445555555420      1


Q ss_pred             cCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cC
Q 000856         1137 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VD 1214 (1252)
Q Consensus      1137 gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~D 1214 (1252)
                      -.+.++    ..||||||||++|||||+.+|++|||||||++||+.+...+.+.|++.. +++|||+|||+++.+.. ||
T Consensus       388 ~~~~~~----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d  463 (501)
T PRK10762        388 SMEQAI----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSD  463 (501)
T ss_pred             CccCch----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCC
Confidence            123333    4699999999999999999999999999999999999999999999875 47899999999998854 89


Q ss_pred             EEEEEeCCEEEEecChhhhh
Q 000856         1215 CIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1215 rI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      +|++|++|+++..|+++++.
T Consensus       464 ~v~~l~~G~i~~~~~~~~~~  483 (501)
T PRK10762        464 RILVMHEGRISGEFTREQAT  483 (501)
T ss_pred             EEEEEECCEEEEEeccccCC
Confidence            99999999999999887763

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=2e-70  Score=736.86  Aligned_cols=510  Identities=20%  Similarity=0.282  Sum_probs=403.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHH
Q 000856           86 YALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGN  165 (1252)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~  165 (1252)
                      |...+++++++..++.+++.++..+.+.+...++|.+++++++++|++||+.+ ++|++++|+++|++.+++.+...+..
T Consensus       952 ~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~-~~G~ilnr~s~Di~~id~~l~~~~~~ 1030 (1495)
T PLN03232        952 YIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTN-PTGRVINRFSKDIGDIDRNVANLMNM 1030 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcC-CchHHHHHhHhhHHHHHHHHHHHHHH
Confidence            45556677777888889999999999999999999999999999999999965 79999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchH
Q 000856          166 FIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAG-GLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGES  244 (1252)
Q Consensus       166 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~  244 (1252)
                      ++..++.+++.+++++++++.. ++.++.+++++.+. .++.+..++..+......+...+.+.|+++|+++||+|++++
T Consensus      1031 ~~~~~~~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~ 1109 (1495)
T PLN03232       1031 FMNQLWQLLSTFALIGTVSTIS-LWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYD 1109 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHH
Confidence            9988888888777777776533 22222222222222 223333344555555666778899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CccC-----HHHHHHHHHHHHHHHHHH
Q 000856          245 KALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRN-GVTD-----GGKAFTAIFSAIVGGMSL  318 (1252)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~-----~~~~~~~~~~~~~~~~~l  318 (1252)
                      ++.+++.+..+...+..+.......+.....   ..+..+++++.+...+.. +.+.     .+.+..++.+......++
T Consensus      1110 ~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l 1186 (1495)
T PLN03232       1110 RMAKINGKSMDNNIRFTLANTSSNRWLTIRL---ETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLL 1186 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHH
Confidence            8877776665555444332221111111111   111112222233333332 3221     111111222333334466


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCC--CCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEE
Q 000856          319 GQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTN--GRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTV  396 (1252)
Q Consensus       319 ~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~  396 (1252)
                      ..+...+..+..+..|.+|+.++++.+++.+.....  .....+..+.|+|+||+|+|+++ .+++|+|+||+|++||++
T Consensus      1187 ~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~Gekv 1265 (1495)
T PLN03232       1187 SGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKV 1265 (1495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEE
Confidence            677777888899999999999999876553211111  11112345679999999999643 246999999999999999


Q ss_pred             EEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHH
Q 000856          397 AVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAA  476 (1252)
Q Consensus       397 ~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~  476 (1252)
                      ||||+||||||||+++|.|+++|++|+|.+||+|+++++.+++|++|+||||||.||++||||||.++. ..++++++++
T Consensus      1266 aIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~a 1344 (1495)
T PLN03232       1266 GVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEA 1344 (1495)
T ss_pred             EEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999875 5789999999


Q ss_pred             HHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEE
Q 000856          477 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTV  556 (1252)
Q Consensus       477 ~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi  556 (1252)
                      ++.++++++++.+|+|+||.+|++|.+||||||||++|||||+++|+|||||||||+||+++++.+++.|++..+++|+|
T Consensus      1345 l~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI 1424 (1495)
T PLN03232       1345 LERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTML 1424 (1495)
T ss_pred             HHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988899999


Q ss_pred             EEccCccchhccCEEEEEeCCEEEEecChHHHHhcc-cchHHHHHHH
Q 000856          557 VVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQ  602 (1252)
Q Consensus       557 ~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~~~  602 (1252)
                      +||||++++.+||+|+||++|+|+|.|+|+||++++ +.|+++++.+
T Consensus      1425 ~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232       1425 VIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred             EEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence            999999999999999999999999999999999887 4898887654

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=7e-73  Score=695.32  Aligned_cols=457  Identities=25%  Similarity=0.447  Sum_probs=351.1

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccc--CCCCcEEEEC---------------
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY--DPNAGHVLLD---------------  427 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~--~~~~G~i~~~---------------  427 (1252)
                      |+++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+.  +|++|+|.++               
T Consensus         1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~   77 (520)
T TIGR03269         1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK   77 (520)
T ss_pred             CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence            478999999963   35899999999999999999999999999999999996  7999999997               


Q ss_pred             --------Ccccc-------CCC---HHHHhhhceEEccC-CCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHH
Q 000856          428 --------NVDIK-------TLQ---LRWLRDQIGLVNQE-PALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSF  485 (1252)
Q Consensus       428 --------g~~~~-------~~~---~~~~~~~i~~v~Q~-~~l~~~-tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~  485 (1252)
                              |.++.       ..+   ...+|+.++|++|+ +.+++. |++||+.++...  ....+..     ..+.+.
T Consensus        78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~  152 (520)
T TIGR03269        78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAV-----GRAVDL  152 (520)
T ss_pred             cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHH
Confidence                    33221       111   12356789999998 567764 999999875321  1111111     112334


Q ss_pred             HhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCcc
Q 000856          486 ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLS  563 (1252)
Q Consensus       486 ~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~  563 (1252)
                      ++.+  |++....+...+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.|+++.  .|+|||+|||+++
T Consensus       153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~  230 (520)
T TIGR03269       153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE  230 (520)
T ss_pred             HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence            4444  66666677788999999999999999999999999999999999999999999999884  3899999999999


Q ss_pred             chhc-cCEEEEEeCCEEEEecChHHHHhcccchHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccC
Q 000856          564 TIRN-VDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNL  642 (1252)
Q Consensus       564 ~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  642 (1252)
                      .+.. ||+|++|++|+++..|+++++....      .                                           
T Consensus       231 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~------~-------------------------------------------  261 (520)
T TIGR03269       231 VIEDLSDKAIWLENGEIKEEGTPDEVVAVF------M-------------------------------------------  261 (520)
T ss_pred             HHHHhcCEEEEEeCCEEeeecCHHHHHHHH------H-------------------------------------------
Confidence            9976 8999999999998776554331100      0                                           


Q ss_pred             CccccCCCCcccccccccccccCCCCCchHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch
Q 000856          643 SYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPAS  722 (1252)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  722 (1252)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (520)
T TIGR03269       262 --------------------------------------------------------------------------------  261 (520)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHH
Q 000856          723 MERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKS  802 (1252)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~  802 (1252)
                                                                               .               +      
T Consensus       262 ---------------------------------------------------------~---------------~------  263 (520)
T TIGR03269       262 ---------------------------------------------------------E---------------G------  263 (520)
T ss_pred             ---------------------------------------------------------h---------------h------
Confidence                                                                     0               0      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHH
Q 000856          803 AIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTV  882 (1252)
Q Consensus       803 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tI  882 (1252)
                                                 +                        ..                          
T Consensus       264 ---------------------------~------------------------~~--------------------------  266 (520)
T TIGR03269       264 ---------------------------V------------------------SE--------------------------  266 (520)
T ss_pred             ---------------------------c------------------------hh--------------------------
Confidence                                       0                        00                          


Q ss_pred             HHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 000856          883 AAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANS  962 (1252)
Q Consensus       883 ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~  962 (1252)
                                                                                                      
T Consensus       267 --------------------------------------------------------------------------------  266 (520)
T TIGR03269       267 --------------------------------------------------------------------------------  266 (520)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCC--CCCccceeeeeEEEeCCcE
Q 000856          963 VAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPS--RPDVVVFKDFNLRIRAGQS 1040 (1252)
Q Consensus       963 ~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~--~~~~~vL~~isl~I~~Ge~ 1040 (1252)
                                              ...... .+   .      ...-++++||+++|++  +...++|+|+||+|++||+
T Consensus       267 ------------------------~~~~~~-~~---~------~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~  312 (520)
T TIGR03269       267 ------------------------VEKECE-VE---V------GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEI  312 (520)
T ss_pred             ------------------------hccccc-cC---C------CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCE
Confidence                                    000000 00   0      0124999999999953  1124699999999999999


Q ss_pred             EEEEcCCCCChHHHHHHHhccCCCCCceEEEC-Ccc---cCCCC---HHHHhcccEEEccccccCc-ccHHHHhccCCC-
Q 000856         1041 QALVGASGSGKSSVIALIERFYDPTAGKVMID-GKD---IRRLN---LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE- 1111 (1252)
Q Consensus      1041 vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~id-G~d---i~~~~---~~~lR~~i~~VpQd~~lf~-gTIreNl~~~~~- 1111 (1252)
                      +||+|+||||||||+++|+|+++|++|+|.++ |.+   +...+   ...+|++++||||++.+|. .|++||+.++.. 
T Consensus       313 ~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~  392 (520)
T TIGR03269       313 FGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL  392 (520)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc
Confidence            99999999999999999999999999999996 643   33332   2346778999999998876 599999975311 


Q ss_pred             CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHH
Q 000856         1112 GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187 (1252)
Q Consensus      1112 ~~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i 1187 (1252)
                      ..    .++++.++++..++.+.-  .++-++.++    ..||||||||++|||||+.+|++|||||||++||+.+...+
T Consensus       393 ~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l  466 (520)
T TIGR03269       393 ELPDELARMKAVITLKMVGFDEEK--AEEILDKYP----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDV  466 (520)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCcc--chhhhhCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence            11    123455667777664310  000123333    46999999999999999999999999999999999999999


Q ss_pred             HHHHHHHc-C-CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhc
Q 000856         1188 QEALERLM-R-GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1188 ~~~l~~~~-~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~ 1235 (1252)
                      .+.|+++. + +.|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus       467 ~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  517 (520)
T TIGR03269       467 THSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE  517 (520)
T ss_pred             HHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            99998875 2 7899999999999865 89999999999999999988764

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=5e-72  Score=603.32  Aligned_cols=470  Identities=31%  Similarity=0.476  Sum_probs=365.1

Q ss_pred             cEEEEeEEEECCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccccCCCHH
Q 000856          364 NIEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTLQLR  437 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~~~~  437 (1252)
                      -++++|++..|... ....+++++||+|++||.+||||+||||||-..+.++|+++.     -+|+|.++|.|+-..+..
T Consensus         6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~   85 (534)
T COG4172           6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER   85 (534)
T ss_pred             ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence            47899999988532 245689999999999999999999999999999999999964     379999999999877766


Q ss_pred             HHhh----hceEEccCCC--Cchh-cHHHHH----hcCCCC---CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCC
Q 000856          438 WLRD----QIGLVNQEPA--LFAT-TILENI----LYGKPE---ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQ  503 (1252)
Q Consensus       438 ~~~~----~i~~v~Q~~~--l~~~-tv~~ni----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~  503 (1252)
                      .+|+    +|+++||+|-  |-+- ||..-|    ..-..-   +..++..+.++.+++.+        -...+...+.+
T Consensus        86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~--------p~~rl~~yPHe  157 (534)
T COG4172          86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPE--------PEKRLDAYPHE  157 (534)
T ss_pred             HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCc--------hhhhhhhCCcc
Confidence            6553    6999999993  3222 554444    332110   11122222222222211        11245667789


Q ss_pred             CChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEE
Q 000856          504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVV  580 (1252)
Q Consensus       504 LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~  580 (1252)
                      |||||||||.||.||+.+|++||-||||.+||.....+|.+.|+++.  .|..+++||||+..++. ||||+||.+|+++
T Consensus       158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv  237 (534)
T COG4172         158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV  237 (534)
T ss_pred             cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence            99999999999999999999999999999999999999999999985  38999999999999987 7999999999999


Q ss_pred             EecChHHHHhcc-cchHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCcccccccc
Q 000856          581 ETGTHEELIAKA-GAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSN  659 (1252)
Q Consensus       581 ~~g~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (1252)
                      |+|+.+++.... ..|.+..                                                            
T Consensus       238 E~~~t~~lF~~PqHpYTr~L------------------------------------------------------------  257 (534)
T COG4172         238 ETGTTETLFAAPQHPYTRKL------------------------------------------------------------  257 (534)
T ss_pred             ecCcHHHHhhCCCChHHHHH------------------------------------------------------------
Confidence            999877765431 1111000                                                            


Q ss_pred             cccccCCCCCchHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHH
Q 000856          660 AETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGL  739 (1252)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  739 (1252)
                                                                                                      
T Consensus       258 --------------------------------------------------------------------------------  257 (534)
T COG4172         258 --------------------------------------------------------------------------------  257 (534)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          740 YAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLL  819 (1252)
Q Consensus       740 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~  819 (1252)
                                                                                                      
T Consensus       258 --------------------------------------------------------------------------------  257 (534)
T COG4172         258 --------------------------------------------------------------------------------  257 (534)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHH
Q 000856          820 TSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHEL  899 (1252)
Q Consensus       820 ~~~i~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~  899 (1252)
                                                                                                      
T Consensus       258 --------------------------------------------------------------------------------  257 (534)
T COG4172         258 --------------------------------------------------------------------------------  257 (534)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          900 RVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGES  979 (1252)
Q Consensus       900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  979 (1252)
                                                                                                      
T Consensus       258 --------------------------------------------------------------------------------  257 (534)
T COG4172         258 --------------------------------------------------------------------------------  257 (534)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCC--------CccceeeeeEEEeCCcEEEEEcCCCCCh
Q 000856          980 VGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRP--------DVVVFKDFNLRIRAGQSQALVGASGSGK 1051 (1252)
Q Consensus       980 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~--------~~~vL~~isl~I~~Ge~vaIvG~SGSGK 1051 (1252)
                             ++.++..   .+ .+.+...+.-++.+||...|+-+.        ...+++++||+.++||.+||||+|||||
T Consensus       258 -------l~aeP~g---~~-~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGK  326 (534)
T COG4172         258 -------LAAEPSG---DP-PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGK  326 (534)
T ss_pred             -------HhcCCCC---CC-CCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCc
Confidence                   0000000   00 000111123467777777775321        1358999999999999999999999999


Q ss_pred             HHHHHHHhccCCCCCceEEECCcccCCCCHHH---HhcccEEEccccc--c-CcccHHHHhccC----CCCCC----HHH
Q 000856         1052 SSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LRLKIGLVQQEPA--L-FAASIFDNIAYG----KEGAT----EAE 1117 (1252)
Q Consensus      1052 STLl~lL~rl~~p~~G~I~idG~di~~~~~~~---lR~~i~~VpQd~~--l-f~gTIreNl~~~----~~~~~----dee 1117 (1252)
                      |||..+|+|+.+++ |+|.++|.||...+.++   +|+++-+|+|||+  | -..||-+-|.-|    .+..+    ++.
T Consensus       327 sTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~r  405 (534)
T COG4172         327 STLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQR  405 (534)
T ss_pred             chHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHH
Confidence            99999999999876 99999999999888765   7899999999996  2 234666555433    22333    566


Q ss_pred             HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--
Q 000856         1118 VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-- 1195 (1252)
Q Consensus      1118 i~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-- 1195 (1252)
                      +.+|++.+|++.-...          .-...||||||||||||||++-+|++++||||||+||..-+++|.+.++++-  
T Consensus       406 v~~aL~EVGLDp~~r~----------RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k  475 (534)
T COG4172         406 VIEALEEVGLDPATRN----------RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK  475 (534)
T ss_pred             HHHHHHHcCCChhHhh----------cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHH
Confidence            8889999998754332          2235699999999999999999999999999999999999999999999875  


Q ss_pred             CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcCCCchhHH
Q 000856         1196 RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 1243 (1252)
Q Consensus      1196 ~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~ 1243 (1252)
                      .+-+-++|+|++..++. ||+|+||.+|+|||+|+.++++++|...|.+
T Consensus       476 ~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~  524 (534)
T COG4172         476 HGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTR  524 (534)
T ss_pred             hCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHH
Confidence            47799999999999965 8999999999999999999999999888864

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-72  Score=688.33  Aligned_cols=453  Identities=25%  Similarity=0.381  Sum_probs=351.6

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCH-HHHhhh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLRDQ  442 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~  442 (1252)
                      .++++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++++
T Consensus         4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~   80 (501)
T PRK11288          4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG   80 (501)
T ss_pred             eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence            4899999999964   358999999999999999999999999999999999999999999999999865443 456778


Q ss_pred             ceEEccCCCCchh-cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPE-----ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR  516 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-tv~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lAR  516 (1252)
                      ++|++|++.++.. |++||+.++...     ....+..     ..+.+.++.+  |+.........+||||||||++|||
T Consensus        81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar  153 (501)
T PRK11288         81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK  153 (501)
T ss_pred             EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence            9999999988875 999999986321     1111111     1223445554  5555566778899999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhcccc
Q 000856          517 AMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKAGA  594 (1252)
Q Consensus       517 al~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~  594 (1252)
                      ||+.+|+++||||||++||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++..++..+...    
T Consensus       154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~----  229 (501)
T PRK11288        154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVD----  229 (501)
T ss_pred             HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCC----
Confidence            9999999999999999999999999999999875 48999999999999866 89999999999986442100000    


Q ss_pred             hHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCcccccccccccccCCCCCchHHH
Q 000856          595 YASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFL  674 (1252)
Q Consensus       595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (1252)
                                                                               .       .              
T Consensus       230 ---------------------------------------------------------~-------~--------------  231 (501)
T PRK11288        230 ---------------------------------------------------------R-------D--------------  231 (501)
T ss_pred             ---------------------------------------------------------H-------H--------------
Confidence                                                                     0       0              


Q ss_pred             HHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          675 RLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSI  754 (1252)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  754 (1252)
                      .+                                   .                                          
T Consensus       232 ~~-----------------------------------~------------------------------------------  234 (501)
T PRK11288        232 QL-----------------------------------V------------------------------------------  234 (501)
T ss_pred             HH-----------------------------------H------------------------------------------
Confidence            00                                   0                                          


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          755 MGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSL  834 (1252)
Q Consensus       755 ~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l  834 (1252)
                                    +..       ... .  .                                                
T Consensus       235 --------------~~~-------~~~-~--~------------------------------------------------  242 (501)
T PRK11288        235 --------------QAM-------VGR-E--I------------------------------------------------  242 (501)
T ss_pred             --------------HHh-------cCC-C--c------------------------------------------------
Confidence                          000       000 0  0                                                


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000856          835 LILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAG  914 (1252)
Q Consensus       835 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  914 (1252)
                                                                                                      
T Consensus       243 --------------------------------------------------------------------------------  242 (501)
T PRK11288        243 --------------------------------------------------------------------------------  242 (501)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 000856          915 ILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRID  994 (1252)
Q Consensus       915 ~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~  994 (1252)
                                                                                               .......
T Consensus       243 -------------------------------------------------------------------------~~~~~~~  249 (501)
T PRK11288        243 -------------------------------------------------------------------------GDIYGYR  249 (501)
T ss_pred             -------------------------------------------------------------------------ccccccc
Confidence                                                                                     0000000


Q ss_pred             CCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCc
Q 000856          995 PDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK 1074 (1252)
Q Consensus       995 ~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~ 1074 (1252)
                      +. +      +.+..++++|++++       .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.
T Consensus       250 ~~-~------~~~~~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~  315 (501)
T PRK11288        250 PR-P------LGEVRLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGK  315 (501)
T ss_pred             cc-C------CCCcEEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCE
Confidence            00 0      01124899999842       3899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCC-HHHHhcccEEEccccc---cC-cccHHHHhccCCCCC--------C----HHHHHHHHHHcCchhhHhhCCCc
Q 000856         1075 DIRRLN-LKSLRLKIGLVQQEPA---LF-AASIFDNIAYGKEGA--------T----EAEVVEAARAANVHGFVSALPNA 1137 (1252)
Q Consensus      1075 di~~~~-~~~lR~~i~~VpQd~~---lf-~gTIreNl~~~~~~~--------~----deei~~al~~~~l~~~i~~lp~g 1137 (1252)
                      ++...+ .+..|++++|+||++.   +| ..|+.||+.++....        .    ++++.+.++..++.      ++-
T Consensus       316 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~  389 (501)
T PRK11288        316 PIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK------TPS  389 (501)
T ss_pred             ECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc------cCC
Confidence            987544 3456789999999973   44 579999997642110        1    12344555555542      112


Q ss_pred             CCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCE
Q 000856         1138 YKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDC 1215 (1252)
Q Consensus      1138 ldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~Dr 1215 (1252)
                      .++++    ..||||||||++|||||+.+|++|||||||++||..+...+++.|+++. .+.|||+|||+++.+. .||+
T Consensus       390 ~~~~~----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~  465 (501)
T PRK11288        390 REQLI----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADR  465 (501)
T ss_pred             ccCcc----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCE
Confidence            34444    4699999999999999999999999999999999999999999998875 4789999999999885 5799


Q ss_pred             EEEEeCCEEEEecChhhhh
Q 000856         1216 IGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1216 I~vl~~G~Ive~G~~~eLl 1234 (1252)
                      +++|++|++++.|++++..
T Consensus       466 i~~l~~g~i~~~~~~~~~~  484 (501)
T PRK11288        466 IVVMREGRIAGELAREQAT  484 (501)
T ss_pred             EEEEECCEEEEEEccccCC
Confidence            9999999999999987754

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.1e-72  Score=686.89  Aligned_cols=457  Identities=23%  Similarity=0.378  Sum_probs=351.0

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC--CCcEEEECCccccCCCHHH-Hhh
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP--NAGHVLLDNVDIKTLQLRW-LRD  441 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~~~g~~~~~~~~~~-~~~  441 (1252)
                      |+++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|  ++|+|.++|+++...+... .++
T Consensus         2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (500)
T TIGR02633         2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA   78 (500)
T ss_pred             EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence            689999999963   3589999999999999999999999999999999999987  7999999999987766543 456


Q ss_pred             hceEEccCCCCchh-cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHhhCCCCccccc-cCCCCCCChHHHHHHH
Q 000856          442 QIGLVNQEPALFAT-TILENILYGKPE------ATMAEVEAAASAANAHSFITLLPNGYSTQV-GERGVQLSGGQKQRIA  513 (1252)
Q Consensus       442 ~i~~v~Q~~~l~~~-tv~~ni~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~g~~LSgGqkqRv~  513 (1252)
                      +++||+|++.++.. |++||+.++...      ...++..     ..+.+.++.+  |+.... .....+||||||||++
T Consensus        79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~  151 (500)
T TIGR02633        79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE  151 (500)
T ss_pred             CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence            79999999988765 999999886421      1111111     1123444444  554332 3457799999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          514 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       514 lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |||||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++..|+.+++...
T Consensus       152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  231 (500)
T TIGR02633       152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED  231 (500)
T ss_pred             HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHH
Confidence            9999999999999999999999999999999999874 48899999999999976 899999999999866532110000


Q ss_pred             ccchHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCcccccccccccccCCCCCch
Q 000856          592 AGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDG  671 (1252)
Q Consensus       592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1252)
                                                                                                      
T Consensus       232 --------------------------------------------------------------------------------  231 (500)
T TIGR02633       232 --------------------------------------------------------------------------------  231 (500)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          672 YFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYF  751 (1252)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  751 (1252)
                         ..                                   ...                                     
T Consensus       232 ---~~-----------------------------------~~~-------------------------------------  236 (500)
T TIGR02633       232 ---DI-----------------------------------ITM-------------------------------------  236 (500)
T ss_pred             ---HH-----------------------------------HHH-------------------------------------
Confidence               00                                   000                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          752 FSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWR  831 (1252)
Q Consensus       752 ~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  831 (1252)
                                         .       +.. +  .                                             
T Consensus       237 -------------------~-------~~~-~--~---------------------------------------------  242 (500)
T TIGR02633       237 -------------------M-------VGR-E--I---------------------------------------------  242 (500)
T ss_pred             -------------------H-------hCc-c--c---------------------------------------------
Confidence                               0       000 0  0                                             


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHH
Q 000856          832 VSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL  911 (1252)
Q Consensus       832 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~  911 (1252)
                                                                                                      
T Consensus       243 --------------------------------------------------------------------------------  242 (500)
T TIGR02633       243 --------------------------------------------------------------------------------  242 (500)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 000856          912 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST  991 (1252)
Q Consensus       912 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~  991 (1252)
                                                                                                 ....+
T Consensus       243 ---------------------------------------------------------------------------~~~~~  247 (500)
T TIGR02633       243 ---------------------------------------------------------------------------TSLYP  247 (500)
T ss_pred             ---------------------------------------------------------------------------ccccc
Confidence                                                                                       00000


Q ss_pred             CCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-CCceEE
Q 000856          992 RIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-TAGKVM 1070 (1252)
Q Consensus       992 ~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-~~G~I~ 1070 (1252)
                      . .+. +      ..+.-|+++|++++|+...+.++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.
T Consensus       248 ~-~~~-~------~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~  319 (500)
T TIGR02633       248 H-EPH-E------IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVF  319 (500)
T ss_pred             c-ccc-C------CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence            0 000 0      001248999999999422123599999999999999999999999999999999999995 899999


Q ss_pred             ECCcccCCCCH-HHHhcccEEEcccc---ccCc-ccHHHHhccCCC-------CCC----HHHHHHHHHHcCchhhHhhC
Q 000856         1071 IDGKDIRRLNL-KSLRLKIGLVQQEP---ALFA-ASIFDNIAYGKE-------GAT----EAEVVEAARAANVHGFVSAL 1134 (1252)
Q Consensus      1071 idG~di~~~~~-~~lR~~i~~VpQd~---~lf~-gTIreNl~~~~~-------~~~----deei~~al~~~~l~~~i~~l 1134 (1252)
                      ++|.++...+. ..+|++++||||++   .+|. .|+++|+.++..       ...    ++++.++++..++.+     
T Consensus       320 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----  394 (500)
T TIGR02633       320 INGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT-----  394 (500)
T ss_pred             ECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC-----
Confidence            99999865443 56788999999996   3554 699999986421       011    123455555555421     


Q ss_pred             CCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-
Q 000856         1135 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG- 1212 (1252)
Q Consensus      1135 p~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~- 1212 (1252)
                       .-.+.++    ..||||||||++|||||+++|++|||||||++||+.+...+++.|+++. ++.|||+|||+++.+.. 
T Consensus       395 -~~~~~~~----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~  469 (500)
T TIGR02633       395 -ASPFLPI----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGL  469 (500)
T ss_pred             -CCccCcc----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence             1123444    4699999999999999999999999999999999999999999998874 47899999999999865 


Q ss_pred             cCEEEEEeCCEEEEecChhhh
Q 000856         1213 VDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1213 ~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||+|++|++|+++..++.+++
T Consensus       470 ~d~v~~l~~G~i~~~~~~~~~  490 (500)
T TIGR02633       470 SDRVLVIGEGKLKGDFVNHAL  490 (500)
T ss_pred             CCEEEEEECCEEEEEEccccC
Confidence            899999999999987765443

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=1e-71  Score=681.18  Aligned_cols=462  Identities=22%  Similarity=0.381  Sum_probs=356.6

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHh-hh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR-DQ  442 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~-~~  442 (1252)
                      .|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..
T Consensus        11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   87 (510)
T PRK15439         11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG   87 (510)
T ss_pred             eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence            5899999999964   3589999999999999999999999999999999999999999999999998776665544 46


Q ss_pred             ceEEccCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      ++|++|++.++.. |++||+.++....  .+...     .+.+.++.+  |++........+|||||||||+|||||+.+
T Consensus        88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~  158 (510)
T PRK15439         88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASMQ-----KMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRD  158 (510)
T ss_pred             EEEEeccCccCCCCcHHHHhhcccccc--hHHHH-----HHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence            9999999988875 9999999875321  11111     122344444  566566777889999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhcccchHHHH
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKAGAYASLI  599 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~  599 (1252)
                      |++|||||||++||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++....     ..
T Consensus       159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~-----~~  233 (510)
T PRK15439        159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD-----II  233 (510)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH-----HH
Confidence            99999999999999999999999999874 48999999999999866 8999999999999988876653210     00


Q ss_pred             HHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCcccccccccccccCCCCCchHHHHHHHh
Q 000856          600 RFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKL  679 (1252)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (1252)
                      +.   ... ...      .                                 .                           
T Consensus       234 ~~---~~~-~~~------~---------------------------------~---------------------------  243 (510)
T PRK15439        234 QA---ITP-AAR------E---------------------------------K---------------------------  243 (510)
T ss_pred             HH---HhC-ccc------c---------------------------------c---------------------------
Confidence            00   000 000      0                                 0                           


Q ss_pred             hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          680 NAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENL  759 (1252)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  759 (1252)
                                                                                                      
T Consensus       244 --------------------------------------------------------------------------------  243 (510)
T PRK15439        244 --------------------------------------------------------------------------------  243 (510)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          760 TTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGT  839 (1252)
Q Consensus       760 ~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~  839 (1252)
                                     .+      + ..                                                     
T Consensus       244 ---------------~~------~-~~-----------------------------------------------------  248 (510)
T PRK15439        244 ---------------SL------S-AS-----------------------------------------------------  248 (510)
T ss_pred             ---------------cc------c-cc-----------------------------------------------------
Confidence                           00      0 00                                                     


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000856          840 YPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGI  919 (1252)
Q Consensus       840 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  919 (1252)
                                                                                  +                   
T Consensus       249 ------------------------------------------------------------~-------------------  249 (510)
T PRK15439        249 ------------------------------------------------------------Q-------------------  249 (510)
T ss_pred             ------------------------------------------------------------c-------------------
Confidence                                                                        0                   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 000856          920 SQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPD  999 (1252)
Q Consensus       920 ~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~  999 (1252)
                                                                                    +. . ...+.. .+..+ 
T Consensus       250 --------------------------------------------------------------~~-~-~~~~~~-~~~~~-  263 (510)
T PRK15439        250 --------------------------------------------------------------KL-W-LELPGN-RRQQA-  263 (510)
T ss_pred             --------------------------------------------------------------cc-c-cccccc-ccccC-
Confidence                                                                          00 0 000000 00000 


Q ss_pred             CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCC
Q 000856         1000 AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL 1079 (1252)
Q Consensus      1000 ~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~ 1079 (1252)
                           +.+.-|+++|++.        .+|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.++|.++...
T Consensus       264 -----~~~~~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~  330 (510)
T PRK15439        264 -----AGAPVLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINAL  330 (510)
T ss_pred             -----CCCceEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCC
Confidence                 0112489999983        159999999999999999999999999999999999999999999999999877


Q ss_pred             CHHH-HhcccEEEcccc---ccCc-ccHHHHhccCC----CC--CC---HHHHHHHHHHcCchhhHhhCCCcCCCccCCC
Q 000856         1080 NLKS-LRLKIGLVQQEP---ALFA-ASIFDNIAYGK----EG--AT---EAEVVEAARAANVHGFVSALPNAYKTPVGER 1145 (1252)
Q Consensus      1080 ~~~~-lR~~i~~VpQd~---~lf~-gTIreNl~~~~----~~--~~---deei~~al~~~~l~~~i~~lp~gldt~vge~ 1145 (1252)
                      +... .|++++||||++   .+|. .|+.+|+....    +.  ..   ++++.++++..++.      +...+.++   
T Consensus       331 ~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~---  401 (510)
T PRK15439        331 STAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK------FNHAEQAA---  401 (510)
T ss_pred             CHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC------CCCccCcc---
Confidence            6654 467899999996   2554 59999985320    10  01   12344455555442      12234444   


Q ss_pred             CCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCE
Q 000856         1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGR 1223 (1252)
Q Consensus      1146 G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1223 (1252)
                       ..||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||+|++|++|+
T Consensus       402 -~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~  480 (510)
T PRK15439        402 -RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGE  480 (510)
T ss_pred             -ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence             4699999999999999999999999999999999999999999999875 48899999999999865 89999999999


Q ss_pred             EEEecChhhhhc
Q 000856         1224 IVEQGSHSELVS 1235 (1252)
Q Consensus      1224 Ive~G~~~eLl~ 1235 (1252)
                      ++..|+++++..
T Consensus       481 i~~~~~~~~~~~  492 (510)
T PRK15439        481 ISGALTGAAINV  492 (510)
T ss_pred             EEEEEccccCCH
Confidence            999999988764

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=1.6e-69  Score=668.66  Aligned_cols=534  Identities=16%  Similarity=0.149  Sum_probs=434.1

Q ss_pred             HHHHHHHhhC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          672 YFLRLLKLNA-PEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHY  750 (1252)
Q Consensus       672 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  750 (1252)
                      ..++++++.+ +.++.++++++.+++.++.....+++++.+++...    ..  ..  .....++++.++..++.++..+
T Consensus         4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~----~~--~~--~~~~~~~~~~~~~~~~~~~~~~   75 (555)
T TIGR01194         4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEEN----FL--GQ--GSLFSFGGLCLLALLFRIGADI   75 (555)
T ss_pred             hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----cc--cc--hHHHHHHHHHHHHHHHHHHHHH
Confidence            3566777777 78888888777777777766666666665553210    00  00  0112233344555667778888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          751 FFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEW  830 (1252)
Q Consensus       751 ~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  830 (1252)
                      +....+.+...++|.++++++++.|++||++  .++|++++|+++|++.++.++.. +..++..++.++++++++++++|
T Consensus        76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~  152 (555)
T TIGR01194        76 FPAYAGMHIIANLRIALCEKILGAPIEEIDR--RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSV  152 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHh--cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Confidence            8999999999999999999999999999975  78999999999999999998864 77788888888888899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHH--HHHHHHHHHHHhHHHHHHH
Q 000856          831 RVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQN--KILSLFCHELRVPQSQTLR  908 (1252)
Q Consensus       831 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~--~~~~~~~~~~~~~~~~~~~  908 (1252)
                      .+++++++.+|+.+++.++..++.++...+.++..+.....+.|.+.|++++|+|+.++  ...+++.+..++..+...+
T Consensus       153 ~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (555)
T TIGR01194       153 PMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII  232 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999988888887777777666677677777888899999999999999999999954  4566777777777666555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000856          909 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLD  988 (1252)
Q Consensus       909 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~  988 (1252)
                      ..........+..++..+...+.++++...   |.++.|.++++..+......|+..+.....++.++..+.+|+.++++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~  309 (555)
T TIGR01194       233 EILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGE  309 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            544444333333444333344444444433   78999999999999999999999999999999999999999999976


Q ss_pred             ccCCCCCC--CCCCC-----CCCCccccEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHh
Q 000856          989 RSTRIDPD--DPDAE-----PVETIRGEIELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIE 1059 (1252)
Q Consensus       989 ~~~~~~~~--~~~~~-----~~~~~~g~I~~~nvsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~ 1059 (1252)
                      .+.+.++.  .+...     +.....+.|+|+||+|+|++.+  .+++|+|+||+|++||++|||||||||||||+++|+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~  389 (555)
T TIGR01194       310 RFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC  389 (555)
T ss_pred             hhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence            32111110  01000     1112246799999999997431  236999999999999999999999999999999999


Q ss_pred             ccCCCCCceEEECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCC
Q 000856         1060 RFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYK 1139 (1252)
Q Consensus      1060 rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gld 1139 (1252)
                      |+++|++|+|.+||+|+++++.+++|+++++|+||+++|++|+++|+   .++.++++++++++.++++++++.+|+|+|
T Consensus       390 g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~  466 (555)
T TIGR01194       390 GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFS  466 (555)
T ss_pred             CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccC
Confidence            99999999999999999999999999999999999999999999996   356789999999999999999999999999


Q ss_pred             CccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHH-H-cCCCeEEEEecCchhhhccCEEE
Q 000856         1140 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALER-L-MRGRTTVLVAHRLSTIRGVDCIG 1217 (1252)
Q Consensus      1140 t~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~-~-~~~~TvI~IaHrl~ti~~~DrI~ 1217 (1252)
                      |.     .+||||||||++||||++++|+|||||||||+||++||+.+++.+.+ . .+++|+|+||||++++..||+|+
T Consensus       467 t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~  541 (555)
T TIGR01194       467 TT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQII  541 (555)
T ss_pred             Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE
Confidence            95     68999999999999999999999999999999999999999987643 3 36899999999999999999999


Q ss_pred             EEeCCEEEEe
Q 000856         1218 VVQDGRIVEQ 1227 (1252)
Q Consensus      1218 vl~~G~Ive~ 1227 (1252)
                      +|++|+|+|.
T Consensus       542 ~l~~G~i~~~  551 (555)
T TIGR01194       542 KLAAGCIVKD  551 (555)
T ss_pred             EEECCEEEEe
Confidence            9999999875

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=6.8e-69  Score=706.99  Aligned_cols=221  Identities=26%  Similarity=0.403  Sum_probs=189.4

Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhh
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ  442 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~  442 (1252)
                      ..|+++|++++|+++ ++.+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. +...+|++
T Consensus       927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257       927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred             ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence            369999999999632 3469999999999999999999999999999999999999999999999999864 45567888


Q ss_pred             ceEEccCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~  519 (1252)
                      +|||+|++.+++. ||+||+.++...  ...++..+     .+.+.++.+  |++...++...+||||||||++|||||+
T Consensus      1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257      1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred             EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence            9999999999875 999999874211  11112111     123344444  6666778888999999999999999999


Q ss_pred             cCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhcc
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       520 ~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      .+|+++|||||||+||+.+++.+++.|+++++|+|||++||+++++.. ||||++|++|+++..|+++++.++-
T Consensus      1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257      1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred             cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence            999999999999999999999999999998779999999999999976 8999999999999999999987653

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-71  Score=675.85  Aligned_cols=450  Identities=21%  Similarity=0.348  Sum_probs=347.2

Q ss_pred             EEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCH-HHHhhhceE
Q 000856          367 FKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLRDQIGL  445 (1252)
Q Consensus       367 ~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~  445 (1252)
                      ++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++.++|
T Consensus         1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~   77 (491)
T PRK10982          1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM   77 (491)
T ss_pred             CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence            3689999963   358999999999999999999999999999999999999999999999999876544 345678999


Q ss_pred             EccCCCCchh-cHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000856          446 VNQEPALFAT-TILENILYGKPEA-----TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       446 v~Q~~~l~~~-tv~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~  519 (1252)
                      ++|++.++.. |++||+.++....     ...+..     ..+.+.++.+  |++....+...+|||||||||+|||||+
T Consensus        78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~  150 (491)
T PRK10982         78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS  150 (491)
T ss_pred             EecccccccCCCHHHHhhcccccccccccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence            9999987755 9999998763211     111111     1223445554  6666667788899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhcccchHH
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKAGAYAS  597 (1252)
Q Consensus       520 ~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~  597 (1252)
                      .+|++|||||||++||+.+.+.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...     .
T Consensus       151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-----~  225 (491)
T PRK10982        151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD-----K  225 (491)
T ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH-----H
Confidence            9999999999999999999999999999875 48999999999999866 899999999999987765432000     0


Q ss_pred             HHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCcccccccccccccCCCCCchHHHHHH
Q 000856          598 LIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLL  677 (1252)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (1252)
                      ..                                                                              
T Consensus       226 ~~------------------------------------------------------------------------------  227 (491)
T PRK10982        226 II------------------------------------------------------------------------------  227 (491)
T ss_pred             HH------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             HhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          678 KLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGE  757 (1252)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  757 (1252)
                                                         ..                                           
T Consensus       228 -----------------------------------~~-------------------------------------------  229 (491)
T PRK10982        228 -----------------------------------AM-------------------------------------------  229 (491)
T ss_pred             -----------------------------------HH-------------------------------------------
Confidence                                               00                                           


Q ss_pred             HHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          758 NLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLIL  837 (1252)
Q Consensus       758 ~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l  837 (1252)
                                   ....++.                                                            
T Consensus       230 -------------~~~~~~~------------------------------------------------------------  236 (491)
T PRK10982        230 -------------MVGRSLT------------------------------------------------------------  236 (491)
T ss_pred             -------------HhCCCcc------------------------------------------------------------
Confidence                         0000000                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000856          838 GTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILF  917 (1252)
Q Consensus       838 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  917 (1252)
                                                                                                      
T Consensus       237 --------------------------------------------------------------------------------  236 (491)
T PRK10982        237 --------------------------------------------------------------------------------  236 (491)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000856          918 GISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDD  997 (1252)
Q Consensus       918 ~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~  997 (1252)
                                                                                         .  .. +. ... 
T Consensus       237 -------------------------------------------------------------------~--~~-~~-~~~-  244 (491)
T PRK10982        237 -------------------------------------------------------------------Q--RF-PD-KEN-  244 (491)
T ss_pred             -------------------------------------------------------------------c--cc-cc-ccC-
Confidence                                                                               0  00 00 000 


Q ss_pred             CCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccC
Q 000856          998 PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR 1077 (1252)
Q Consensus       998 ~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~ 1077 (1252)
                      +      +.+..|+++|++++|.     ++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.+||.++.
T Consensus       245 ~------~~~~~i~~~~l~~~~~-----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~  313 (491)
T PRK10982        245 K------PGEVILEVRNLTSLRQ-----PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN  313 (491)
T ss_pred             C------CCCcEEEEeCcccccC-----cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECC
Confidence            0      0112489999998751     4899999999999999999999999999999999999999999999999998


Q ss_pred             CCCHH-HHhcccEEEccccc---cCc-ccHHHH-----hccCCC--C-CC----HHHHHHHHHHcCchhhHhhCCCcCCC
Q 000856         1078 RLNLK-SLRLKIGLVQQEPA---LFA-ASIFDN-----IAYGKE--G-AT----EAEVVEAARAANVHGFVSALPNAYKT 1140 (1252)
Q Consensus      1078 ~~~~~-~lR~~i~~VpQd~~---lf~-gTIreN-----l~~~~~--~-~~----deei~~al~~~~l~~~i~~lp~gldt 1140 (1252)
                      ..+.. .+|+.++|+||++.   +|. .|+++|     +.....  . .+    ++++.+.++..++.      .+-.+.
T Consensus       314 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~  387 (491)
T PRK10982        314 NHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVK------TPGHRT  387 (491)
T ss_pred             CCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCcc------CCCccc
Confidence            76654 45788999999963   454 466666     432111  1 11    12234444444432      111344


Q ss_pred             ccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEE
Q 000856         1141 PVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGV 1218 (1252)
Q Consensus      1141 ~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~v 1218 (1252)
                      ++    ..||||||||++||||++++|+||||||||++||+.+...+++.|+++. +++|||+|||+++.+. .|||+++
T Consensus       388 ~~----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~  463 (491)
T PRK10982        388 QI----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILV  463 (491)
T ss_pred             cc----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEE
Confidence            44    4699999999999999999999999999999999999999999998864 5899999999999885 5799999


Q ss_pred             EeCCEEEEecChhhh
Q 000856         1219 VQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1219 l~~G~Ive~G~~~eL 1233 (1252)
                      |++|+++..++.+++
T Consensus       464 l~~g~i~~~~~~~~~  478 (491)
T PRK10982        464 MSNGLVAGIVDTKTT  478 (491)
T ss_pred             EECCEEEEEEccccC
Confidence            999999988876543

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=1e-69  Score=604.14  Aligned_cols=532  Identities=25%  Similarity=0.325  Sum_probs=462.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          691 AIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAA  770 (1252)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  770 (1252)
                      .+++.+-.++....+.++-...|.+..+..   ......+.++.+++.++..++-.++.....+++.++..+++..+|..
T Consensus        29 ~lfS~~INiL~L~~~lyMLQVyDRVL~S~s---~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a  105 (580)
T COG4618          29 GLFSAVINLLALTGPLYMLQVYDRVLPSRS---VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAA  105 (580)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccCCC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            333444444555555555555554443221   11222333444445555667777889999999999999999999999


Q ss_pred             HHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          771 ILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQ  850 (1252)
Q Consensus       771 ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~p~~~~~~~~~  850 (1252)
                      .+++|..-     ++.|+= ..--+|.++++.+++..-+..+.+....-+.+.++|.+++++.++.++...+++.+.++.
T Consensus       106 ~~~~~l~~-----~~~g~~-~Q~LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln  179 (580)
T COG4618         106 SFSAPLLR-----RGSGDG-LQPLRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLN  179 (580)
T ss_pred             HHhhHHhh-----cCCCcc-ccchhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98776642     222221 123489999999999988888888888888888999999999999999999999999998


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          851 QLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEAL  930 (1252)
Q Consensus       851 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  930 (1252)
                      .+..++..++..+.....+.+...+..+.++|++.|......++|.+....+.....+.+-..+.+..++..+-...+..
T Consensus       180 ~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~  259 (580)
T COG4618         180 ERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSA  259 (580)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888899999999999999999999999999999999888888888888889999999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccE
Q 000856          931 ILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEI 1010 (1252)
Q Consensus       931 ~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I 1010 (1252)
                      ++.+|.+++..|++|.|.+++..........|+...+..|.++..+..+..|+.+.+...+...+.    -+.+..+|.+
T Consensus       260 iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~----m~LP~P~g~L  335 (580)
T COG4618         260 VLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER----MPLPAPQGAL  335 (580)
T ss_pred             HHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC----CCCCCCCcee
Confidence            999999999999999999999999999999999999999999999999999999999865543321    2223346899


Q ss_pred             EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEE
Q 000856         1011 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 1090 (1252)
Q Consensus      1011 ~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~ 1090 (1252)
                      .++++++.-|+. .+|+|+|+||+++|||-+||+||||||||||.++|.|.++|.+|.|.+||-|+++++.+++-++|||
T Consensus       336 ~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGY  414 (580)
T COG4618         336 SVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGY  414 (580)
T ss_pred             eEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCc
Confidence            999999976644 5689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEE
Q 000856         1091 VQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAIL 1170 (1252)
Q Consensus      1091 VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~IL 1170 (1252)
                      .|||..||+|||+|||+-+.++.++|.+.+|++.++.||.|.++|+||||.|||+|..|||||||||+||||++.+|.++
T Consensus       415 LPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lv  494 (580)
T COG4618         415 LPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLV  494 (580)
T ss_pred             CcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEE
Confidence            99999999999999998777789999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1171 LLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1171 iLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      +||||-|+||.+.|+.+.++|.+.+ +|+|+|+||||++.+..+|+|+||++|++..+|+-+|.+++
T Consensus       495 VLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~  561 (580)
T COG4618         495 VLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK  561 (580)
T ss_pred             EecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence            9999999999999999999998876 69999999999999999999999999999999999998875

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=2.9e-68  Score=657.40  Aligned_cols=535  Identities=16%  Similarity=0.139  Sum_probs=433.2

Q ss_pred             chHHHHHHhhc-hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000856           24 LPFFQLFSFAD-KYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSY  102 (1252)
Q Consensus        24 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (1252)
                      ..+++++++.+ ++++ .++++++++++.++.....+++++.+++.....   . .  .    ....++++.++.+++.|
T Consensus         3 ~~~~~l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~---~-~--~----~~~~~~~~~~~~~~~~~   71 (555)
T TIGR01194         3 AAIGEILALLRSPFPA-ITAFSIALGLAGGLAIIALLASINNAIHEENFL---G-Q--G----SLFSFGGLCLLALLFRI   71 (555)
T ss_pred             chHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---c-c--h----HHHHHHHHHHHHHHHHH
Confidence            34677777777 5544 455566666666665555555667776542110   0 0  0    11123334556667888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          103 AEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFV  182 (1252)
Q Consensus       103 ~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~  182 (1252)
                      ++.++.+..+.++..++|.+++++++++|+.+|++. ++|++++|+++|++.+++++.. ++.++..++++++.++++++
T Consensus        72 ~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~  149 (555)
T TIGR01194        72 GADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRR-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAY  149 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhc-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999865 8999999999999999999864 77888888888888999999


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchH--HHHHHHHHHHHHHHHH
Q 000856          183 SAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGES--KALNSYSDAIQNTLKL  260 (1252)
Q Consensus       183 ~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~--~~~~~~~~~~~~~~~~  260 (1252)
                      ++|.+++++++.+|+.+++..+..++.++...+.++..++.++.+.|.+.|++++|+|+.++  ...+++.+..++.++.
T Consensus       150 ~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~  229 (555)
T TIGR01194       150 LSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADL  229 (555)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999988888888887778788888888888889999999999999999999999954  5677888888887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          261 GYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLME  340 (1252)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~  340 (1252)
                      ..+..+.......+..++..+...++++++++.   +.++.|.+++++++......|+..+...+..++++..+.+|+.+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~  306 (555)
T TIGR01194       230 HIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLAD  306 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666555444433333333333333344444432   68999998888888878788999999999999999999999999


Q ss_pred             HHccCCC--CCCCCCCCC-----cCCCCcccEEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHH
Q 000856          341 IIKQKPS--IIQDPTNGR-----CLDEVNGNIEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVS  411 (1252)
Q Consensus       341 ~l~~~~~--~~~~~~~~~-----~~~~~~~~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~  411 (1252)
                      +++.+.+  ...+.....     ......+.|+++||+|+|++.+  +.++|+|+||++++||+++|+||||||||||++
T Consensus       307 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~  386 (555)
T TIGR01194       307 FGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAK  386 (555)
T ss_pred             HHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHH
Confidence            9863211  110000000     1111235799999999997532  235899999999999999999999999999999


Q ss_pred             HHhcccCCCCcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCC
Q 000856          412 LIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPN  491 (1252)
Q Consensus       412 ~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (1252)
                      +|+|+++|++|+|.+||.|+++++..++|++++||+|++++|++|+++|+   .++.++++++++++.+++++++..+|+
T Consensus       387 ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~  463 (555)
T TIGR01194       387 LFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDG  463 (555)
T ss_pred             HHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhccccc
Confidence            99999999999999999999999999999999999999999999999995   355678889999999999999999999


Q ss_pred             CccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHH-Hh-cCCCeEEEEccCccchhccC
Q 000856          492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALD-RL-MVGRTTVVVAHRLSTIRNVD  569 (1252)
Q Consensus       492 g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~-~~-~~~~tvi~itH~~~~~~~~d  569 (1252)
                      |++|.     .+||||||||++||||++++|+|+|||||||+||+++++.+.+.+. .+ .+++|+|+||||++.+..||
T Consensus       464 g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d  538 (555)
T TIGR01194       464 GFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELAD  538 (555)
T ss_pred             ccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCC
Confidence            99984     6899999999999999999999999999999999999999988764 44 35899999999999999999


Q ss_pred             EEEEEeCCEEEEe
Q 000856          570 TVAVIQQGQVVET  582 (1252)
Q Consensus       570 ~i~~l~~G~i~~~  582 (1252)
                      +|++|++|++++.
T Consensus       539 ~i~~l~~G~i~~~  551 (555)
T TIGR01194       539 QIIKLAAGCIVKD  551 (555)
T ss_pred             EEEEEECCEEEEe
Confidence            9999999999864

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=1.9e-70  Score=669.45  Aligned_cols=452  Identities=23%  Similarity=0.300  Sum_probs=345.8

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus         3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i   79 (490)
T PRK10938          3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV   79 (490)
T ss_pred             eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence            3889999999974   2489999999999999999999999999999999999999999999999888766666667789


Q ss_pred             eEEccCCCC--c-------hhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 000856          444 GLVNQEPAL--F-------ATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI  514 (1252)
Q Consensus       444 ~~v~Q~~~l--~-------~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~l  514 (1252)
                      +|++|++.+  +       ..|+++|+.++.  ...+++.         +.++.+  |++...+....+||||||||++|
T Consensus        80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l  146 (490)
T PRK10938         80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCE---------QLAQQF--GITALLDRRFKYLSTGETRKTLL  146 (490)
T ss_pred             ceeccCcchhhcccchhhccccHHHhcccch--hHHHHHH---------HHHHHc--CCHhhhhCCcccCCHHHHHHHHH
Confidence            999998753  2       348888876531  1112222         233333  55555667788999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhcc
Q 000856          515 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       515 ARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      ||||+.+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+.+++....
T Consensus       147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~  226 (490)
T PRK10938        147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA  226 (490)
T ss_pred             HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcch
Confidence            999999999999999999999999999999999875 47899999999999876 8999999999999988876653210


Q ss_pred             cchHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCcccccccccccccCCCCCchH
Q 000856          593 GAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGY  672 (1252)
Q Consensus       593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (1252)
                      . ...+..                 .                     +                                
T Consensus       227 ~-~~~~~~-----------------~---------------------~--------------------------------  235 (490)
T PRK10938        227 L-VAQLAH-----------------S---------------------E--------------------------------  235 (490)
T ss_pred             h-hhhhhh-----------------h---------------------h--------------------------------
Confidence            0 000000                 0                     0                                


Q ss_pred             HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          673 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFF  752 (1252)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  752 (1252)
                                                                                                      
T Consensus       236 --------------------------------------------------------------------------------  235 (490)
T PRK10938        236 --------------------------------------------------------------------------------  235 (490)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          753 SIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRV  832 (1252)
Q Consensus       753 ~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l  832 (1252)
                                       +     +  .. .+.+.                                              
T Consensus       236 -----------------~-----~--~~-~~~~~----------------------------------------------  244 (490)
T PRK10938        236 -----------------Q-----L--EG-VQLPE----------------------------------------------  244 (490)
T ss_pred             -----------------c-----c--Cc-cccCc----------------------------------------------
Confidence                             0     0  00 00000                                              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000856          833 SLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT  912 (1252)
Q Consensus       833 ~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~  912 (1252)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (490)
T PRK10938        245 --------------------------------------------------------------------------------  244 (490)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 000856          913 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTR  992 (1252)
Q Consensus       913 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~  992 (1252)
                                                                                                ... +.
T Consensus       245 --------------------------------------------------------------------------~~~-~~  249 (490)
T PRK10938        245 --------------------------------------------------------------------------PDE-PS  249 (490)
T ss_pred             --------------------------------------------------------------------------ccc-cc
Confidence                                                                                      000 00


Q ss_pred             CCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-CCceEEE
Q 000856          993 IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-TAGKVMI 1071 (1252)
Q Consensus       993 ~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-~~G~I~i 1071 (1252)
                       .+...   +  ....-|+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+.+| ++|+|.+
T Consensus       250 -~~~~~---~--~~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~  320 (490)
T PRK10938        250 -ARHAL---P--ANEPRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTL  320 (490)
T ss_pred             -ccccc---C--CCCceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEE
Confidence             00000   0  01124999999999953   3599999999999999999999999999999999998876 6999999


Q ss_pred             CCcccCC-CCHHHHhcccEEEccccccCc---ccHHHHhccCCC-------CCC---HHHHHHHHHHcCchh-hHhhCCC
Q 000856         1072 DGKDIRR-LNLKSLRLKIGLVQQEPALFA---ASIFDNIAYGKE-------GAT---EAEVVEAARAANVHG-FVSALPN 1136 (1252)
Q Consensus      1072 dG~di~~-~~~~~lR~~i~~VpQd~~lf~---gTIreNl~~~~~-------~~~---deei~~al~~~~l~~-~i~~lp~ 1136 (1252)
                      +|.++.. .+....|++++|+||++.++.   .|+++++.++..       ...   ++++.++++..++.+ ..     
T Consensus       321 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----  395 (490)
T PRK10938        321 FGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-----  395 (490)
T ss_pred             ecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-----
Confidence            9987632 234457889999999986542   467777653210       111   234566677776643 22     


Q ss_pred             cCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CC-CeEEEEecCchhhhc--
Q 000856         1137 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RG-RTTVLVAHRLSTIRG-- 1212 (1252)
Q Consensus      1137 gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~-~TvI~IaHrl~ti~~-- 1212 (1252)
                        +.++    ..||||||||++|||||+++|++|||||||++||+.+...+.+.|+++. ++ +|||+|||+++.+..  
T Consensus       396 --~~~~----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~  469 (490)
T PRK10938        396 --DAPF----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACI  469 (490)
T ss_pred             --cCch----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhh
Confidence              2333    4699999999999999999999999999999999999999999999875 34 479999999999964  


Q ss_pred             cCEEEEEeCCEEEEec
Q 000856         1213 VDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1213 ~DrI~vl~~G~Ive~G 1228 (1252)
                      ||++++|++|+|++.-
T Consensus       470 ~d~v~~l~~G~i~~~~  485 (490)
T PRK10938        470 THRLEFVPDGDIYRYV  485 (490)
T ss_pred             heeEEEecCCceEEee
Confidence            6999999999998753

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-69  Score=588.96  Aligned_cols=490  Identities=32%  Similarity=0.437  Sum_probs=415.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhH
Q 000856          107 CWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAG-LVVGFVSAW  185 (1252)
Q Consensus       107 ~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~  185 (1252)
                      .+...++.....+--+.|.|+.++++.|+-++ ++|.+..-+......|+..+...+..++..++=+... .++...++|
T Consensus         5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~   83 (497)
T COG5265           5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLER-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW   83 (497)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhc-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence            34455666677777788999999999998764 7888877777766666665555555555544433333 333445788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHH
Q 000856          186 RLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAG  265 (1252)
Q Consensus       186 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  265 (1252)
                      +.+++.++++.+..++.....-......+...++.++++....|++-+.+++|.|+.|+.+..+|....+.+.+...|..
T Consensus        84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~  163 (497)
T COG5265          84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH  163 (497)
T ss_pred             HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence            88888777766666555444444444445666778888999999999999999999999999999999999999988877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 000856          266 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQK  345 (1252)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~  345 (1252)
                      ...++.......+......+....+..-+..|.+|.|++...-.+++....|+..+...+..+.+++...++++++++.+
T Consensus       164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~  243 (497)
T COG5265         164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE  243 (497)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence            66666555444455555556667777788899999999877666666667788888888999999999999999999887


Q ss_pred             CCCCCCCCCCCcCC-CCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEE
Q 000856          346 PSIIQDPTNGRCLD-EVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV  424 (1252)
Q Consensus       346 ~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i  424 (1252)
                      .+....+ ..++.. ...+.+.|+||+|.|.  +.+++|+++||++++|+++|+|||||+||||++++|.|||++++|.|
T Consensus       244 ~~v~d~p-da~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I  320 (497)
T COG5265         244 AEVSDAP-DAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI  320 (497)
T ss_pred             hhhccCC-CCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence            6643222 222222 3456799999999996  45679999999999999999999999999999999999999999999


Q ss_pred             EECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCC
Q 000856          425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQL  504 (1252)
Q Consensus       425 ~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~L  504 (1252)
                      .+||+|+++.....+|+.||.||||..||++|+..||.+|.|.++++++..+++.++.+++++.+|+|++|.|||+|-.|
T Consensus       321 ~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglkl  400 (497)
T COG5265         321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKL  400 (497)
T ss_pred             EEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecC
Q 000856          505 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT  584 (1252)
Q Consensus       505 SgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~  584 (1252)
                      ||||||||||||+++++|+||+|||+||+||.++|+.++..|++..+|+|.++|+||++++-+||.|+||++|+|+|.|+
T Consensus       401 Sggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~  480 (497)
T COG5265         401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGT  480 (497)
T ss_pred             cCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhcccchHHHHH
Q 000856          585 HEELIAKAGAYASLIR  600 (1252)
Q Consensus       585 ~~~l~~~~~~~~~~~~  600 (1252)
                      |+||++..|.|+++|.
T Consensus       481 h~~ll~~~g~ya~mw~  496 (497)
T COG5265         481 HEELLAAGGLYAEMWR  496 (497)
T ss_pred             HHHHHHcCChHHHHhc
Confidence            9999999999999874

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-68  Score=659.04  Aligned_cols=480  Identities=24%  Similarity=0.392  Sum_probs=345.2

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      |+++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.           ..|+
T Consensus         2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~   67 (530)
T PRK15064          2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG   67 (530)
T ss_pred             EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence            789999999964   35999999999999999999999999999999999999999999999873           3699


Q ss_pred             EEccCCCCchh-cHHHHHhcCCCCC----------------CHH---HHHHH----------HHHhcHHHHHhhCCCCcc
Q 000856          445 LVNQEPALFAT-TILENILYGKPEA----------------TMA---EVEAA----------ASAANAHSFITLLPNGYS  494 (1252)
Q Consensus       445 ~v~Q~~~l~~~-tv~~ni~~~~~~~----------------~~~---~~~~~----------~~~~~~~~~~~~~~~g~~  494 (1252)
                      |++|++.++.. |++||+.++....                ...   .+.+.          .....+.+.++.+  |+.
T Consensus        68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~  145 (530)
T PRK15064         68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP  145 (530)
T ss_pred             EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence            99999988765 9999998753100                000   00000          0011233445555  565


Q ss_pred             ccc-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEE
Q 000856          495 TQV-GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVA  572 (1252)
Q Consensus       495 ~~~-~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~  572 (1252)
                      ... .....+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|.+  .+.|||+|||+++.+.. ||+|+
T Consensus       146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~  223 (530)
T PRK15064        146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA  223 (530)
T ss_pred             hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence            433 356789999999999999999999999999999999999999999999975  47899999999999876 89999


Q ss_pred             EEeCCEE-EEecChHHHHhcccc-hHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCC
Q 000856          573 VIQQGQV-VETGTHEELIAKAGA-YASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGA  650 (1252)
Q Consensus       573 ~l~~G~i-~~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  650 (1252)
                      +|++|++ ++.|+++++.+.... +........                                               
T Consensus       224 ~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------  256 (530)
T PRK15064        224 DLDYGELRVYPGNYDEYMTAATQARERLLADNA-----------------------------------------------  256 (530)
T ss_pred             EEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHH-----------------------------------------------
Confidence            9999999 478888776432100 000000000                                               


Q ss_pred             CcccccccccccccCCCCCchHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHH
Q 000856          651 DGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEF  730 (1252)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  730 (1252)
                                              +..                                           ...       
T Consensus       257 ------------------------~~~-------------------------------------------~~~-------  262 (530)
T PRK15064        257 ------------------------KKK-------------------------------------------AQI-------  262 (530)
T ss_pred             ------------------------HHH-------------------------------------------HHH-------
Confidence                                    000                                           000       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHH
Q 000856          731 VFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISV  810 (1252)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~  810 (1252)
                                                    .+++. ...                      +                  
T Consensus       263 ------------------------------~~~~~-~~~----------------------~------------------  271 (530)
T PRK15064        263 ------------------------------AELQS-FVS----------------------R------------------  271 (530)
T ss_pred             ------------------------------HHHHH-HHH----------------------H------------------
Confidence                                          00000 000                      0                  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHH
Q 000856          811 ILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNK  890 (1252)
Q Consensus       811 ~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~  890 (1252)
                                                                           ..... .            ++      
T Consensus       272 -----------------------------------------------------~~~~~-~------------~~------  279 (530)
T PRK15064        272 -----------------------------------------------------FSANA-S------------KA------  279 (530)
T ss_pred             -----------------------------------------------------hhccc-h------------hh------
Confidence                                                                 00000 0            00      


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          891 ILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLA  970 (1252)
Q Consensus       891 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  970 (1252)
                               ....                                                                   
T Consensus       280 ---------~~~~-------------------------------------------------------------------  283 (530)
T PRK15064        280 ---------KQAT-------------------------------------------------------------------  283 (530)
T ss_pred             ---------HHHH-------------------------------------------------------------------
Confidence                     0000                                                                   


Q ss_pred             HHHHHHHHHHHHHHHH-hcccCCCCCCCCC---CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcC
Q 000856          971 PEIIRGGESVGSVFST-LDRSTRIDPDDPD---AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGA 1046 (1252)
Q Consensus       971 ~~~~~~~~s~~ri~~~-~~~~~~~~~~~~~---~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~ 1046 (1252)
                             ....++.+. ....+......+.   .......+..|+++|++++|++   .++|+|+||+|++||++||+||
T Consensus       284 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~  353 (530)
T PRK15064        284 -------SRAKQIDKIKLEEVKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGE  353 (530)
T ss_pred             -------HHHHHHhhccccccCCccccCceeeCCCCCCCCCceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECC
Confidence                   000000000 0000000000000   0000011236999999999963   3599999999999999999999


Q ss_pred             CCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEEEccccc--cC-cccHHHHhccCC-CCCCHHHHHHHH
Q 000856         1047 SGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPA--LF-AASIFDNIAYGK-EGATEAEVVEAA 1122 (1252)
Q Consensus      1047 SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~--lf-~gTIreNl~~~~-~~~~deei~~al 1122 (1252)
                      ||||||||+++|+|+++|++|+|.++|           +++++|+||++.  ++ ..|+++|+.... ....++++.+++
T Consensus       354 NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l  422 (530)
T PRK15064        354 NGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTL  422 (530)
T ss_pred             CCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHH
Confidence            999999999999999999999999987           357999999974  44 369999986432 223456677888


Q ss_pred             HHcCch-hhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEE
Q 000856         1123 RAANVH-GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTV 1201 (1252)
Q Consensus      1123 ~~~~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI 1201 (1252)
                      +..++. +..       +.++    ..||||||||++||||++++|+||||||||++||+.+...+.+.|++.  +.|||
T Consensus       423 ~~~~l~~~~~-------~~~~----~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi  489 (530)
T PRK15064        423 GRLLFSQDDI-------KKSV----KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLI  489 (530)
T ss_pred             HHcCCChhHh-------cCcc----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEE
Confidence            888773 332       2333    469999999999999999999999999999999999999999999886  45999


Q ss_pred             EEecCchhhhc-cCEEEEEeCCEEE-EecChhhhhcC
Q 000856         1202 LVAHRLSTIRG-VDCIGVVQDGRIV-EQGSHSELVSR 1236 (1252)
Q Consensus      1202 ~IaHrl~ti~~-~DrI~vl~~G~Iv-e~G~~~eLl~~ 1236 (1252)
                      +|||+++.+.. ||+|++|++|+++ ..|+++++++.
T Consensus       490 ~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~  526 (530)
T PRK15064        490 FVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS  526 (530)
T ss_pred             EEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence            99999999865 8999999999998 78999888764

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=9.1e-67  Score=699.93  Aligned_cols=502  Identities=17%  Similarity=0.186  Sum_probs=404.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 000856           93 LGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLST  172 (1252)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~  172 (1252)
                      ++++..++.+++.+++.+.+.+...++|.++++++++.|++||+.. ++|++++|+++|++.+++.+...+..++..++.
T Consensus       934 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~ 1012 (1490)
T TIGR01271       934 TADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTM-KAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLI 1012 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556677788888888999999999999999999999999965 799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHH
Q 000856          173 FLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSD  252 (1252)
Q Consensus       173 ~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~  252 (1252)
                      +++.++++++++|.++++++.++.+++++..++.+..++..+......+...+.+.|++.|+.+||+|++++.+.+++.+
T Consensus      1013 ~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~ 1092 (1490)
T TIGR01271      1013 VLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHK 1092 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHH
Confidence            99999988888887655444333333344445555555555555666677899999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          253 AIQNTLKLGYKAGMAKGLGLGCTYGIACMSW--ALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSK  330 (1252)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  330 (1252)
                      ..+...+..+.......+......++..+..  +++++++.     ...+.|.+..++.+.+....++..+...+..+..
T Consensus      1093 ~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~ 1167 (1490)
T TIGR01271      1093 ALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDG 1167 (1490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8876544333222222222111111111111  11112222     1233344333333334444566666777778889


Q ss_pred             HHHHHHHHHHHHccCCCCCCCCCC----------------CCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCC
Q 000856          331 GKAAGYKLMEIIKQKPSIIQDPTN----------------GRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGK  394 (1252)
Q Consensus       331 ~~~s~~ri~~~l~~~~~~~~~~~~----------------~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~  394 (1252)
                      +..|.+|+.++++.+++.......                .++..+..+.|+|+||+|+|++. .+++|+|+||+|++||
T Consensus      1168 ~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~Ge 1246 (1490)
T TIGR01271      1168 LMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQ 1246 (1490)
T ss_pred             HHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCC
Confidence            999999999999766543211000                00112345789999999999753 3569999999999999


Q ss_pred             EEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHH
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVE  474 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~  474 (1252)
                      ++||||+||||||||+++|.|+++ ++|+|.+||.|+++++.+.+|++|+||||+|.||+||||+||.... ..++++++
T Consensus      1247 kvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~ 1324 (1490)
T TIGR01271      1247 RVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIW 1324 (1490)
T ss_pred             EEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHH
Confidence            999999999999999999999997 7999999999999999999999999999999999999999997543 46899999


Q ss_pred             HHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCe
Q 000856          475 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRT  554 (1252)
Q Consensus       475 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~t  554 (1252)
                      ++++.+++.+++..+|+|+||.++++|.+||||||||++|||||+++|+|||||||||+||+++++.+++.|++..+++|
T Consensus      1325 ~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~T 1404 (1490)
T TIGR01271      1325 KVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCT 1404 (1490)
T ss_pred             HHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             EEEEccCccchhccCEEEEEeCCEEEEecChHHHHhcccchHHHHHHHH
Q 000856          555 TVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQE  603 (1252)
Q Consensus       555 vi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~  603 (1252)
                      +|+||||++++..+|+|+||++|+|++.|+|++|+++++.|+++++.+.
T Consensus      1405 vI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271      1405 VILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred             EEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence            9999999999999999999999999999999999988888988876553

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1.3e-67  Score=701.63  Aligned_cols=213  Identities=23%  Similarity=0.420  Sum_probs=182.4

Q ss_pred             cEEEEeEEEECCCC-CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC---CCCceEEECCcccCCCCHHHH
Q 000856         1009 EIELRHVDFAYPSR-PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD---PTAGKVMIDGKDIRRLNLKSL 1084 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~-~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~---p~~G~I~idG~di~~~~~~~l 1084 (1252)
                      .++++||+++|+.+ .++++|+|||++|++||++||+||||||||||+++|+|+.+   |++|+|.+||+++.    ..+
T Consensus       759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~  834 (1394)
T TIGR00956       759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF  834 (1394)
T ss_pred             eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence            47999999999532 23469999999999999999999999999999999999998   78999999999985    257


Q ss_pred             hcccEEEccccc-cCcccHHHHhccCC----C-CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1085 RLKIGLVQQEPA-LFAASIFDNIAYGK----E-GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1085 R~~i~~VpQd~~-lf~gTIreNl~~~~----~-~~~de----ei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      |++++||||++. ++..|+||||.++.    + ..+++    .+.++++..++.       +..|+.+|+.|.+||||||
T Consensus       835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-------~~~d~~v~~~~~~LSgGqr  907 (1394)
T TIGR00956       835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-------SYADAVVGVPGEGLNVEQR  907 (1394)
T ss_pred             hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-------hhCCCeeCCCCCCCCHHHh
Confidence            899999999875 56789999998642    1 23333    345666666654       3468889988889999999


Q ss_pred             HHHHHHHHHccCCC-EEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhh--hccCEEEEEeCC-EEEEecC
Q 000856         1155 QRIAIARAVLKNPA-ILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTI--RGVDCIGVVQDG-RIVEQGS 1229 (1252)
Q Consensus      1155 QrlaLARALl~~p~-ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti--~~~DrI~vl~~G-~Ive~G~ 1229 (1252)
                      ||++|||||+++|+ ||+||||||+||+.+...+++.|++.. +|+|||+++|+++..  ..+|+|++|++| +++++|+
T Consensus       908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~  987 (1394)
T TIGR00956       908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD  987 (1394)
T ss_pred             hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence            99999999999997 999999999999999999999999874 689999999999973  578999999997 9999998


Q ss_pred             hhh
Q 000856         1230 HSE 1232 (1252)
Q Consensus      1230 ~~e 1232 (1252)
                      +.+
T Consensus       988 ~~~  990 (1394)
T TIGR00956       988 LGE  990 (1394)
T ss_pred             ccc
Confidence            743

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=9.7e-67  Score=658.81  Aligned_cols=572  Identities=21%  Similarity=0.270  Sum_probs=447.6

Q ss_pred             hcCCchHHHHHHhhch-hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHH
Q 000856           20 KEQSLPFFQLFSFADK-YDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVC   98 (1252)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (1252)
                      +.+...+..+..|.+- ..+...++.+++.+..-.+.....+++..+.+.-......  .  .....+.+++.+++++..
T Consensus       797 ~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~--~--~~~~~~~~vY~~l~~~~~  872 (1381)
T KOG0054|consen  797 ETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT--T--VSTSFYLGVYALLGVASS  872 (1381)
T ss_pred             hcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc--C--CCcchHHHHHHHHHHHHH
Confidence            4556667766667654 3333222222222222233333334566666542211100  0  112235566667788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           99 FSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLV  178 (1252)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~  178 (1252)
                      ++..++.+.+...+.+....|+.++++++++.|++|||.. ++|+++||+++|++.+++-+...+..++..++.+++.++
T Consensus       873 ~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtT-P~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~  951 (1381)
T KOG0054|consen  873 LLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTT-PTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILV  951 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCC-CccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            8888899999999999999999999999999999999976 799999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHH
Q 000856          179 VGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTL  258 (1252)
Q Consensus       179 ~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~  258 (1252)
                      ++.+..|...++++.+..+.+.+..+|.+..+...+-.....+-..+.+.|++.|+.|||+|+.++++.+++....+...
T Consensus       952 vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~ 1031 (1381)
T KOG0054|consen  952 VISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENS 1031 (1381)
T ss_pred             HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhH
Confidence            98888887766666666566666666666666554444444555689999999999999999999999999988888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          259 KLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKL  338 (1252)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri  338 (1252)
                      +..+-.....-+..--+.++..+.+..+..+. .+...+..++|.+-..+.+.+.....++........+....+|.+|+
T Consensus      1032 ~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~-vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv 1110 (1381)
T KOG0054|consen 1032 RAFFLSISANRWLAVRLELLGNLVVLIAALFA-VLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERV 1110 (1381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHH
Confidence            66543222221211122223222222211111 11112226677766666666666666667777778888889999999


Q ss_pred             HHHHccCCCCC--CCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 000856          339 MEIIKQKPSII--QDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       339 ~~~l~~~~~~~--~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~  416 (1252)
                      .+..+.++|.+  .+...+++..+.+|.|+|+|++.+|... -+.||+|+||+|+|||++||||.+|||||||+++|-|+
T Consensus      1111 ~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl 1189 (1381)
T KOG0054|consen 1111 LEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRL 1189 (1381)
T ss_pred             HHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh
Confidence            99998665511  1111123445678999999999999754 35799999999999999999999999999999999999


Q ss_pred             cCCCCcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCcccc
Q 000856          417 YDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQ  496 (1252)
Q Consensus       417 ~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  496 (1252)
                      .+|.+|+|.|||.|+.++.++.+|++++.+||||.||+||+|.|+-- ....+|++++++++.|++.+.++++|.|+|+.
T Consensus      1190 ~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDP-f~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~ 1268 (1381)
T KOG0054|consen 1190 VEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDP-FDEYSDDEIWEALERCQLKDVVSSLPGGLDSE 1268 (1381)
T ss_pred             cCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCc-ccccCHHHHHHHHHHhChHHHHhhCCcCCCce
Confidence            99999999999999999999999999999999999999999999852 23578999999999999999999999999999


Q ss_pred             ccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeC
Q 000856          497 VGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ  576 (1252)
Q Consensus       497 ~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~  576 (1252)
                      +.|+|.|+|-||||-+||||||+++++||+|||+|+++|++|...|++.|++..+++|||.|+||++++.++|||+|||+
T Consensus      1269 v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~ 1348 (1381)
T KOG0054|consen 1269 VSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDA 1348 (1381)
T ss_pred             ecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEecChHHHHhcc-cchHHHH
Q 000856          577 GQVVETGTHEELIAKA-GAYASLI  599 (1252)
Q Consensus       577 G~i~~~g~~~~l~~~~-~~~~~~~  599 (1252)
                      |+++|.|+|.+|+++. +.|+.+.
T Consensus      1349 G~v~EfdsP~~Ll~~~~S~f~~~l 1372 (1381)
T KOG0054|consen 1349 GRVVEFDSPAELLSDKDSLFSSLL 1372 (1381)
T ss_pred             CeEeecCChHHHHhCCcchHHHHH
Confidence            9999999999999874 5554443

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=3.6e-67  Score=646.99  Aligned_cols=484  Identities=22%  Similarity=0.300  Sum_probs=339.4

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++++|++  +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++           +.++
T Consensus         6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i   72 (556)
T PRK11819          6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV   72 (556)
T ss_pred             EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence            5899999999962  24599999999999999999999999999999999999999999999975           2369


Q ss_pred             eEEccCCCCchh-cHHHHHhcCCCCC----------------CH----------HHHHHHHH-------HhcHHHHHhhC
Q 000856          444 GLVNQEPALFAT-TILENILYGKPEA----------------TM----------AEVEAAAS-------AANAHSFITLL  489 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-tv~~ni~~~~~~~----------------~~----------~~~~~~~~-------~~~~~~~~~~~  489 (1252)
                      +||+|+|.+++. |++||+.++....                ..          .++.+.+.       ...+.+.++.+
T Consensus        73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  152 (556)
T PRK11819         73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL  152 (556)
T ss_pred             EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence            999999998876 9999998753100                00          00000010       11122334444


Q ss_pred             CCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-c
Q 000856          490 PNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-V  568 (1252)
Q Consensus       490 ~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~  568 (1252)
                        |++ .......+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+++.  .|+|+|||+++.+.. |
T Consensus       153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~  227 (556)
T PRK11819        153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA  227 (556)
T ss_pred             --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence              553 2467788999999999999999999999999999999999999999999998873  599999999999977 7


Q ss_pred             CEEEEEeCCEEE-EecChHHHHhcccchHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCcccc
Q 000856          569 DTVAVIQQGQVV-ETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYS  647 (1252)
Q Consensus       569 d~i~~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  647 (1252)
                      |+|++|++|+++ ..|+++++.+.....  . ......                                          
T Consensus       228 d~i~~l~~g~i~~~~g~~~~~~~~~~~~--~-~~~~~~------------------------------------------  262 (556)
T PRK11819        228 GWILELDRGRGIPWEGNYSSWLEQKAKR--L-AQEEKQ------------------------------------------  262 (556)
T ss_pred             CeEEEEeCCEEEEecCCHHHHHHHHHHH--H-HHHHHH------------------------------------------
Confidence            999999999986 678777654321000  0 000000                                          


Q ss_pred             CCCCcccccccccccccCCCCCchHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhh
Q 000856          648 TGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKT  727 (1252)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  727 (1252)
                                               +.                                                     
T Consensus       263 -------------------------~~-----------------------------------------------------  264 (556)
T PRK11819        263 -------------------------EA-----------------------------------------------------  264 (556)
T ss_pred             -------------------------HH-----------------------------------------------------
Confidence                                     00                                                     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHH
Q 000856          728 KEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADR  807 (1252)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~  807 (1252)
                                                        +.++.+ .++                                    
T Consensus       265 ----------------------------------~~~~~~-~~~------------------------------------  273 (556)
T PRK11819        265 ----------------------------------ARQKAL-KRE------------------------------------  273 (556)
T ss_pred             ----------------------------------HHHHHH-HHH------------------------------------
Confidence                                              000000 000                                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhcc
Q 000856          808 ISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNA  887 (1252)
Q Consensus       808 ~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~  887 (1252)
                                                                        ......  .....            ++ ..
T Consensus       274 --------------------------------------------------~~~~~~--~~~~~------------~~-~~  288 (556)
T PRK11819        274 --------------------------------------------------LEWVRQ--SPKAR------------QA-KS  288 (556)
T ss_pred             --------------------------------------------------HHHHHH--hhhhh------------HH-HH
Confidence                                                              000000  00000            00 00


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000856          888 QNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETV  967 (1252)
Q Consensus       888 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~  967 (1252)
                      + ...                                                                           
T Consensus       289 ~-~~~---------------------------------------------------------------------------  292 (556)
T PRK11819        289 K-ARL---------------------------------------------------------------------------  292 (556)
T ss_pred             H-HHH---------------------------------------------------------------------------
Confidence            0 000                                                                           


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCC
Q 000856          968 SLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGAS 1047 (1252)
Q Consensus       968 ~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~S 1047 (1252)
                                ...++..+.....................+.-|+++||+++|++   .++|+|+||+|++||++||+|+|
T Consensus       293 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~N  359 (556)
T PRK11819        293 ----------ARYEELLSEEYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPN  359 (556)
T ss_pred             ----------HHHHHhhcccccccCCCceeecCCCCCCCCeEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCC
Confidence                      00000000000000000000000000111235999999999953   35999999999999999999999


Q ss_pred             CCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEEEcccc-ccCc-ccHHHHhccCCCC----CCHHHHHHH
Q 000856         1048 GSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP-ALFA-ASIFDNIAYGKEG----ATEAEVVEA 1121 (1252)
Q Consensus      1048 GSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~-~lf~-gTIreNl~~~~~~----~~deei~~a 1121 (1252)
                      |||||||+++|+|+++|++|+|.+++ +          .+++|+||++ .++. .|+++|+.++...    ..+++..++
T Consensus       360 GsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~  428 (556)
T PRK11819        360 GAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAY  428 (556)
T ss_pred             CCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHH
Confidence            99999999999999999999999954 2          1599999997 5554 5999999865321    123344556


Q ss_pred             HHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEE
Q 000856         1122 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTV 1201 (1252)
Q Consensus      1122 l~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI 1201 (1252)
                      ++..++.+.      ..+.++    ..||||||||++||||++.+|++|||||||++||+.+...+.+.|++. . .|||
T Consensus       429 l~~~~l~~~------~~~~~~----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi  496 (556)
T PRK11819        429 VGRFNFKGG------DQQKKV----GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAV  496 (556)
T ss_pred             HHhCCCChh------HhcCch----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEE
Confidence            666665321      123333    469999999999999999999999999999999999999999999886 3 4899


Q ss_pred             EEecCchhhhc-cCEEEEEeC-CEEEE-ecChhhhhcC
Q 000856         1202 LVAHRLSTIRG-VDCIGVVQD-GRIVE-QGSHSELVSR 1236 (1252)
Q Consensus      1202 ~IaHrl~ti~~-~DrI~vl~~-G~Ive-~G~~~eLl~~ 1236 (1252)
                      +|||+++.+.. ||+|++|++ |++.+ .|+++++++.
T Consensus       497 ~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~  534 (556)
T PRK11819        497 VISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED  534 (556)
T ss_pred             EEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence            99999998865 899999996 88874 6788877654

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=1.6e-66  Score=641.45  Aligned_cols=482  Identities=24%  Similarity=0.342  Sum_probs=337.4

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .++++|++++|++  +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++           +..|
T Consensus         4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i   70 (552)
T TIGR03719         4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV   70 (552)
T ss_pred             EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence            4899999999962  23589999999999999999999999999999999999999999999975           2469


Q ss_pred             eEEccCCCCchh-cHHHHHhcCCCC-----------------CCH---------HHHHHHHHHhc-------HHHHHhhC
Q 000856          444 GLVNQEPALFAT-TILENILYGKPE-----------------ATM---------AEVEAAASAAN-------AHSFITLL  489 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-tv~~ni~~~~~~-----------------~~~---------~~~~~~~~~~~-------~~~~~~~~  489 (1252)
                      +||+|+|++++. |++||+.++...                 ...         .++.+.++.++       +.+.++.+
T Consensus        71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  150 (552)
T TIGR03719        71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL  150 (552)
T ss_pred             EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence            999999998865 999999875310                 000         11222222222       22233333


Q ss_pred             CCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-c
Q 000856          490 PNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-V  568 (1252)
Q Consensus       490 ~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~  568 (1252)
                        |++. .+..+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.  +.|+|+|||+++.+.. |
T Consensus       151 --~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~  225 (552)
T TIGR03719       151 --RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA  225 (552)
T ss_pred             --CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence              4432 46677899999999999999999999999999999999999999999999886  3699999999999977 7


Q ss_pred             CEEEEEeCCEEE-EecChHHHHhcccchHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCcccc
Q 000856          569 DTVAVIQQGQVV-ETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYS  647 (1252)
Q Consensus       569 d~i~~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  647 (1252)
                      |+|++|++|+++ ..|+++++.+....  .. ..+...                                          
T Consensus       226 d~v~~l~~g~i~~~~g~~~~~~~~~~~--~~-~~~~~~------------------------------------------  260 (552)
T TIGR03719       226 GWILELDRGRGIPWEGNYSSWLEQKEK--RL-EQEEKE------------------------------------------  260 (552)
T ss_pred             CeEEEEECCEEEEecCCHHHHHHHHHH--HH-HHHHHH------------------------------------------
Confidence            999999999975 67887766432100  00 000000                                          


Q ss_pred             CCCCcccccccccccccCCCCCchHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhh
Q 000856          648 TGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKT  727 (1252)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  727 (1252)
                                               +                                                      
T Consensus       261 -------------------------~------------------------------------------------------  261 (552)
T TIGR03719       261 -------------------------E------------------------------------------------------  261 (552)
T ss_pred             -------------------------H------------------------------------------------------
Confidence                                     0                                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHH
Q 000856          728 KEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADR  807 (1252)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~  807 (1252)
                                                       .+..+++                       .+.              
T Consensus       262 ---------------------------------~~~~~~~-----------------------~~~--------------  271 (552)
T TIGR03719       262 ---------------------------------SARQKAL-----------------------KRE--------------  271 (552)
T ss_pred             ---------------------------------HHHHHHH-----------------------HHH--------------
Confidence                                             0000000                       000              


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhcc
Q 000856          808 ISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNA  887 (1252)
Q Consensus       808 ~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~  887 (1252)
                                          ..|                       .+.      ....   .                 
T Consensus       272 --------------------~~~-----------------------~~~------~~~~---~-----------------  282 (552)
T TIGR03719       272 --------------------LEW-----------------------VRS------SPKA---R-----------------  282 (552)
T ss_pred             --------------------HHH-----------------------HHh------hhhh---H-----------------
Confidence                                000                       000      0000   0                 


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000856          888 QNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETV  967 (1252)
Q Consensus       888 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~  967 (1252)
                      +.....+.                                                                        
T Consensus       283 ~~~~~~~~------------------------------------------------------------------------  290 (552)
T TIGR03719       283 QAKSKARL------------------------------------------------------------------------  290 (552)
T ss_pred             HHHHHHHH------------------------------------------------------------------------
Confidence            00000000                                                                        


Q ss_pred             HHHHHHHHHHHHHHHHHH-HhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcC
Q 000856          968 SLAPEIIRGGESVGSVFS-TLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGA 1046 (1252)
Q Consensus       968 ~~~~~~~~~~~s~~ri~~-~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~ 1046 (1252)
                                ...++..+ .....++......+ ......+.-++++|++++|++   .++|+|+||+|++||++||+|+
T Consensus       291 ----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~  356 (552)
T TIGR03719       291 ----------ARYEELLSQEFQKRNETAEIYIP-PGPRLGDKVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGP  356 (552)
T ss_pred             ----------HHHHhhhhhcccccCCCceeecC-CCCCCCCeEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECC
Confidence                      00000000 00000000000000 000011235999999999963   3599999999999999999999


Q ss_pred             CCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEEEccccc-cC-cccHHHHhccCCCC--C--CHHHHHH
Q 000856         1047 SGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPA-LF-AASIFDNIAYGKEG--A--TEAEVVE 1120 (1252)
Q Consensus      1047 SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~-lf-~gTIreNl~~~~~~--~--~deei~~ 1120 (1252)
                      ||||||||+++|+|+.+|++|+|.+++ +          .+|+|+||++. ++ ..|+++|+.++...  .  .+.+..+
T Consensus       357 NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~  425 (552)
T TIGR03719       357 NGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRA  425 (552)
T ss_pred             CCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHH
Confidence            999999999999999999999999954 2          16999999973 55 46999999875321  1  1333445


Q ss_pred             HHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeE
Q 000856         1121 AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTT 1200 (1252)
Q Consensus      1121 al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~Tv 1200 (1252)
                      +++..++.+..      .+.++    ..||||||||++|||||+.+|++|||||||++||+.+...+.+.|++..  .||
T Consensus       426 ~l~~~~l~~~~------~~~~~----~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~v  493 (552)
T TIGR03719       426 YVGRFNFKGSD------QQKKV----GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCA  493 (552)
T ss_pred             HHHhCCCChhH------hcCch----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeE
Confidence            55665553211      22333    4699999999999999999999999999999999999999999999873  489


Q ss_pred             EEEecCchhhhc-cCEEEEEeC-CEEEE-ecChhhhhc
Q 000856         1201 VLVAHRLSTIRG-VDCIGVVQD-GRIVE-QGSHSELVS 1235 (1252)
Q Consensus      1201 I~IaHrl~ti~~-~DrI~vl~~-G~Ive-~G~~~eLl~ 1235 (1252)
                      |+|||+++.+.. ||+|++|++ |++++ .|+++++.+
T Consensus       494 iivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~  531 (552)
T TIGR03719       494 VVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE  531 (552)
T ss_pred             EEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence            999999998865 899999997 68874 477776654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=2.2e-65  Score=569.61  Aligned_cols=535  Identities=24%  Similarity=0.286  Sum_probs=450.3

Q ss_pred             HHHHHHHHHHHHHH--HhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           38 WCLMIFGSLGAVIH--GSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQ  115 (1252)
Q Consensus        38 ~~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (1252)
                      ..++.++.+.++++  .+..|+   |+-++.|.+..+.+-+     .+..+.++.+++.++..++.+++.....+.+.++
T Consensus        23 ~a~~~v~lfS~~INiL~L~~~l---yMLQVyDRVL~S~s~~-----TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~l   94 (580)
T COG4618          23 RAFIGVGLFSAVINLLALTGPL---YMLQVYDRVLPSRSVP-----TLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERL   94 (580)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhH---HHHHHHhhhccCCCcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444432  344455   4567888877654222     2333444555666777789999999999999999


Q ss_pred             HHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000856          116 VSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISE-KVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAV  194 (1252)
Q Consensus       116 ~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~  194 (1252)
                      ...+...+|...++.+....    ..|+=..-+ +|.++++.|++. ....++...|+++. +.++|.++++++++.++.
T Consensus        95 D~~L~~~v~~a~~~~~l~~~----~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~y-l~v~fl~Hp~lG~~a~~g  168 (580)
T COG4618          95 DRQLNGPVFAASFSAPLLRR----GSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLY-LAVIFLFHPWLGLIALAG  168 (580)
T ss_pred             HHHhccHHHHHHHhhHHhhc----CCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHH-HHHHHHHHHHHHHHHHHH
Confidence            99999999999987776532    234333333 699999999987 55666777777665 566788888888888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          195 IPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGC  274 (1252)
Q Consensus       195 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (1252)
                      ..++..+..+--+..++-.++..+...+.+....-+..|.++|++.|......++|.+.+.++.....+..-..+....+
T Consensus       169 a~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~  248 (580)
T COG4618         169 AIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGAL  248 (580)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            66666666666677777777788888888999999999999999999999999999999988888877766666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCC
Q 000856          275 TYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTN  354 (1252)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~  354 (1252)
                      .-.+-++....++..|++++.+|++|+|.+++....+-....|+-.....+..+..++.|.+|+.+++...|...+    
T Consensus       249 Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----  324 (580)
T COG4618         249 SRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----  324 (580)
T ss_pred             HHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----
Confidence            6666667777888899999999999999998887667777779989999999999999999999999988765321    


Q ss_pred             CCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCC
Q 000856          355 GRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL  434 (1252)
Q Consensus       355 ~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~  434 (1252)
                      .-+.++..+.+.++++++.=|+. ++++++|+||++.+||.++||||||||||||.|+|.|.++|.+|.|.+||.|++++
T Consensus       325 ~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qW  403 (580)
T COG4618         325 RMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQW  403 (580)
T ss_pred             CCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcC
Confidence            22334456789999999976654 57899999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 000856          435 QLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI  514 (1252)
Q Consensus       435 ~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~l  514 (1252)
                      +.+.+-++|||.||+..||+|||.|||.-..++.+.+.+.++++.++.||.|.++|+||||.+|+.|..|||||||||+|
T Consensus       404 d~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaL  483 (580)
T COG4618         404 DREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIAL  483 (580)
T ss_pred             CHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHH
Confidence            99999999999999999999999999986566788899999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhc
Q 000856          515 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       515 ARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |||||.+|.+++||||-|+||.+.|..+.++|...+ +|.|+|+||||++.+..+|+|++|++|++...|+.+|++++
T Consensus       484 ARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~  561 (580)
T COG4618         484 ARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK  561 (580)
T ss_pred             HHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence            999999999999999999999999999999999886 59999999999999999999999999999999999998765

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=2.3e-64  Score=622.99  Aligned_cols=473  Identities=18%  Similarity=0.233  Sum_probs=377.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          742 VVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTS  821 (1252)
Q Consensus       742 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~  821 (1252)
                      .++.++..++..+.+.++..++|.++++++++.|++||++  +++|++++|+++|++.+...+. .++.++.+++.++++
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~--~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~  138 (547)
T PRK10522         62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQ--LGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGS  138 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhc--cCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            4456678888888999999999999999999999999974  8899999999999999998765 477788888889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccH---HHHHHHHHHH
Q 000856          822 FIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ---NKILSLFCHE  898 (1252)
Q Consensus       822 ~i~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~---~~~~~~~~~~  898 (1252)
                      ++++++++|.+++++++++|+.+++.++..+..++..++..+..++....+.|.++|+++++ ++.+   +.+.+++.+.
T Consensus       139 ~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~  217 (547)
T PRK10522        139 AAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPD  217 (547)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHH
Confidence            99999999999999999999888887777777777777888889999999999999999995 4443   3566777777


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          899 LRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGE  978 (1252)
Q Consensus       899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  978 (1252)
                      .++..+...+.....................+.++++..+   +..+.+....+..+......|+..+.....++..+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~  294 (547)
T PRK10522        218 AQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQV  294 (547)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666655554443333322222222222222222222221   1123333333333344456789999999999999999


Q ss_pred             HHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHH
Q 000856          979 SVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALI 1058 (1252)
Q Consensus       979 s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL 1058 (1252)
                      +.+|+.++.+.+++.+...  ..+ .+..+.|+++||+|+|+++  .++|+|+||+|+|||++|||||||||||||+++|
T Consensus       295 a~~ri~~l~~~~~~~~~~~--~~~-~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll  369 (547)
T PRK10522        295 AFNKLNKLALAPYKAEFPR--PQA-FPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLL  369 (547)
T ss_pred             HHHHHHHHhcccccccccc--ccc-cCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence            9999999875433211111  111 1113579999999999742  3699999999999999999999999999999999


Q ss_pred             hccCCCCCceEEECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcC
Q 000856         1059 ERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAY 1138 (1252)
Q Consensus      1059 ~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gl 1138 (1252)
                      +|+|+|++|+|++||+|+++++.+.+|++++||||||.+|++|+++|   + +..++++++++++.+++.+++.. ++|.
T Consensus       370 ~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~  444 (547)
T PRK10522        370 TGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLEL-EDGR  444 (547)
T ss_pred             hCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhhc-cccC
Confidence            99999999999999999999999999999999999999999999999   2 35788899999999988876652 4442


Q ss_pred             CCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEE
Q 000856         1139 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCI 1216 (1252)
Q Consensus      1139 dt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI 1216 (1252)
                           .+|.+||||||||++||||++++|+|||||||||+||+++++.+.+.+.+..  +++|+|+||||++++..||+|
T Consensus       445 -----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i  519 (547)
T PRK10522        445 -----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRL  519 (547)
T ss_pred             -----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEE
Confidence                 1478999999999999999999999999999999999999999999997654  489999999999999999999


Q ss_pred             EEEeCCEEEEe-cChhhhhcC
Q 000856         1217 GVVQDGRIVEQ-GSHSELVSR 1236 (1252)
Q Consensus      1217 ~vl~~G~Ive~-G~~~eLl~~ 1236 (1252)
                      ++|++|+++|. |++.+-..+
T Consensus       520 ~~l~~G~i~e~~~~~~~~~~~  540 (547)
T PRK10522        520 LEMRNGQLSELTGEERDAASR  540 (547)
T ss_pred             EEEECCEEEEecCCchhhhhh
Confidence            99999999987 566554443

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-65  Score=636.80  Aligned_cols=199  Identities=26%  Similarity=0.417  Sum_probs=167.4

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      -|+++||+++|++   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++.           .++
T Consensus       312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i  377 (638)
T PRK10636        312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL  377 (638)
T ss_pred             eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence            5999999999953   36999999999999999999999999999999999999999999999741           269


Q ss_pred             EEEcccc--ccC-cccHHHHhccCCCCCCHHHHHHHHHHcCchh-hHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 000856         1089 GLVQQEP--ALF-AASIFDNIAYGKEGATEAEVVEAARAANVHG-FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 1164 (1252)
Q Consensus      1089 ~~VpQd~--~lf-~gTIreNl~~~~~~~~deei~~al~~~~l~~-~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl 1164 (1252)
                      +|+||++  .+. ..|+.+++....+...++++.+.++..++.+ ..       +.++    ..||||||||++||||++
T Consensus       378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~-------~~~~----~~LSgGekqRl~La~~l~  446 (638)
T PRK10636        378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKV-------TEET----RRFSGGEKARLVLALIVW  446 (638)
T ss_pred             EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHh-------cCch----hhCCHHHHHHHHHHHHHh
Confidence            9999985  233 3478888742223334566777777777642 22       3334    469999999999999999


Q ss_pred             cCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEE-EecChhhhh
Q 000856         1165 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIV-EQGSHSELV 1234 (1252)
Q Consensus      1165 ~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Iv-e~G~~~eLl 1234 (1252)
                      ++|++|||||||++||+.+...+.+.|++. + .|||+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus       447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~  516 (638)
T PRK10636        447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ  516 (638)
T ss_pred             cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence            999999999999999999999999999986 3 599999999999865 8999999999997 678888874

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=3.2e-63  Score=612.87  Aligned_cols=468  Identities=19%  Similarity=0.208  Sum_probs=368.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856           97 VCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAG  176 (1252)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~  176 (1252)
                      ..++.+++.++..+.+.++..++|.+++++++++|+++|++. ++|++++|+++|++.+..++. .++.++..++.+++.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~  138 (547)
T PRK10522         61 LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQL-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGS  138 (547)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            345677888888999999999999999999999999999865 899999999999999998776 477788888888999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcch---HHHHHHHHHH
Q 000856          177 LVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGE---SKALNSYSDA  253 (1252)
Q Consensus       177 ~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e---~~~~~~~~~~  253 (1252)
                      ++++++++|.+++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++++ ++.+   +.+.+++++.
T Consensus       139 ~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~  217 (547)
T PRK10522        139 AAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPD  217 (547)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHH
Confidence            99999999999999999999988888888999888888889999999999999999999996 4433   4567888887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          254 IQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKA  333 (1252)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  333 (1252)
                      .++..+...+..........+...+......+.+++++..   +..+.+.+..+.+..+....|+..+...+..++++..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~  294 (547)
T PRK10522        218 AQEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQV  294 (547)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777766655544443332222222222222223333221   1122223222222233344688888888999999999


Q ss_pred             HHHHHHHHHccCCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHH
Q 000856          334 AGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLI  413 (1252)
Q Consensus       334 s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l  413 (1252)
                      +.+|+.++++.+++.+..+  ....+ ..+.++++|++|+|+++  .++|+|+||+|++||+++|+||||||||||+++|
T Consensus       295 a~~ri~~l~~~~~~~~~~~--~~~~~-~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll  369 (547)
T PRK10522        295 AFNKLNKLALAPYKAEFPR--PQAFP-DWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLL  369 (547)
T ss_pred             HHHHHHHHhcccccccccc--ccccC-cCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence            9999999876443211111  11111 12469999999999742  3589999999999999999999999999999999


Q ss_pred             hcccCCCCcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCc
Q 000856          414 ERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGY  493 (1252)
Q Consensus       414 ~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  493 (1252)
                      +|+++|++|+|.+||+|+++.+...+|++++||+|+|.+|++|+++|   + +..+++++.++++..++.+++.. ++|.
T Consensus       370 ~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~  444 (547)
T PRK10522        370 TGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLEL-EDGR  444 (547)
T ss_pred             hCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhhc-cccC
Confidence            99999999999999999999999999999999999999999999999   2 33445555555555544433321 2221


Q ss_pred             cccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhccCEE
Q 000856          494 STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTV  571 (1252)
Q Consensus       494 ~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~~d~i  571 (1252)
                           .+|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+..  +++|+|+||||++.+..||+|
T Consensus       445 -----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i  519 (547)
T PRK10522        445 -----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRL  519 (547)
T ss_pred             -----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEE
Confidence                 1378999999999999999999999999999999999999999999987653  489999999999999999999


Q ss_pred             EEEeCCEEEEe-cCh
Q 000856          572 AVIQQGQVVET-GTH  585 (1252)
Q Consensus       572 ~~l~~G~i~~~-g~~  585 (1252)
                      ++|++|++++. |++
T Consensus       520 ~~l~~G~i~e~~~~~  534 (547)
T PRK10522        520 LEMRNGQLSELTGEE  534 (547)
T ss_pred             EEEECCEEEEecCCc
Confidence            99999999876 443

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.3e-65  Score=588.18  Aligned_cols=462  Identities=24%  Similarity=0.415  Sum_probs=357.0

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHH-Hhhh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQ  442 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~  442 (1252)
                      -++++|++++|+.   +.+|+|+||++++||++|++|+||+|||||+|+|+|.|+|++|+|.+||+++...++.. ....
T Consensus         8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G   84 (500)
T COG1129           8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG   84 (500)
T ss_pred             eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence            5899999999974   56999999999999999999999999999999999999999999999999998777654 5557


Q ss_pred             ceEEccCCCCchh-cHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPEAT-MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~  520 (1252)
                      |+.|+||..|++. ||.|||.+|.+... .-.+++......+.+.++.+  |++........+||+||||-|+||||+..
T Consensus        85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIArAl~~  162 (500)
T COG1129          85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL--GLDIDPDTLVGDLSIAQRQMVEIARALSF  162 (500)
T ss_pred             cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHc--CCCCChhhhhhhCCHHHHHHHHHHHHHhc
Confidence            9999999999976 99999999876432 11111111122223445544  43323666777999999999999999999


Q ss_pred             CCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecCh-HHHHhcccchHH
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTH-EELIAKAGAYAS  597 (1252)
Q Consensus       521 ~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~-~~l~~~~~~~~~  597 (1252)
                      +++|+|||||||+|+....+.+++.+++++ +|.++|+||||++++.. ||||.||+||+.+..++. .++-.       
T Consensus       163 ~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~-------  235 (500)
T COG1129         163 DARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSE-------  235 (500)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCH-------
Confidence            999999999999999999999999999996 69999999999999977 899999999999875431 11000       


Q ss_pred             HHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCcccccccccccccCCCCCchHHHHHH
Q 000856          598 LIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLL  677 (1252)
Q Consensus       598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (1252)
                                                                                   +               .+ 
T Consensus       236 -------------------------------------------------------------~---------------~l-  238 (500)
T COG1129         236 -------------------------------------------------------------D---------------EL-  238 (500)
T ss_pred             -------------------------------------------------------------H---------------HH-
Confidence                                                                         0               00 


Q ss_pred             HhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          678 KLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGE  757 (1252)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  757 (1252)
                                                        +..+.                                         
T Consensus       239 ----------------------------------v~~Mv-----------------------------------------  243 (500)
T COG1129         239 ----------------------------------VRLMV-----------------------------------------  243 (500)
T ss_pred             ----------------------------------HHHhh-----------------------------------------
Confidence                                              00000                                         


Q ss_pred             HHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          758 NLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLIL  837 (1252)
Q Consensus       758 ~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l  837 (1252)
                                                 +                                                    
T Consensus       244 ---------------------------G----------------------------------------------------  244 (500)
T COG1129         244 ---------------------------G----------------------------------------------------  244 (500)
T ss_pred             ---------------------------C----------------------------------------------------
Confidence                                       0                                                    


Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000856          838 GTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILF  917 (1252)
Q Consensus       838 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  917 (1252)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (500)
T COG1129         245 --------------------------------------------------------------------------------  244 (500)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 000856          918 GISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDD  997 (1252)
Q Consensus       918 ~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~  997 (1252)
                                                                                      |  +.-+..+. .+  
T Consensus       245 ----------------------------------------------------------------r--~~~~~~~~-~~--  255 (500)
T COG1129         245 ----------------------------------------------------------------R--ELEDLFPE-PP--  255 (500)
T ss_pred             ----------------------------------------------------------------c--chhhhccc-cc--
Confidence                                                                            0  00000000 00  


Q ss_pred             CCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccC
Q 000856          998 PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR 1077 (1252)
Q Consensus       998 ~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~ 1077 (1252)
                      ..    ......++++|++..-       .++|+||++++||++||.|-=|||+|-++++|+|..++.+|+|.+||.++.
T Consensus       256 ~~----~~~~~~l~v~~l~~~~-------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~  324 (500)
T COG1129         256 EE----GIGEPVLEVRNLSGGG-------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVR  324 (500)
T ss_pred             cc----CCCCcEEEEecCCCCC-------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEcc
Confidence            00    0111247788876421       589999999999999999999999999999999999999999999999887


Q ss_pred             CCCHH-HHhcccEEEccccc----cCcccHHHHhccCC-CCCCHH-HHHHHHHHcCchhhHhhCC---CcCCCccCCCCC
Q 000856         1078 RLNLK-SLRLKIGLVQQEPA----LFAASIFDNIAYGK-EGATEA-EVVEAARAANVHGFVSALP---NAYKTPVGERGV 1147 (1252)
Q Consensus      1078 ~~~~~-~lR~~i~~VpQd~~----lf~gTIreNl~~~~-~~~~de-ei~~al~~~~l~~~i~~lp---~gldt~vge~G~ 1147 (1252)
                      --++. ..+..|+|||.|..    +...||++|+.+.. ...+.. -+....++....+++..+.   .+.+.+++    
T Consensus       325 ~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~----  400 (500)
T COG1129         325 IRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG----  400 (500)
T ss_pred             CCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhh----
Confidence            66644 78999999999874    55789999998751 111100 1223333344445555542   23455554    


Q ss_pred             CCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEE
Q 000856         1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIV 1225 (1252)
Q Consensus      1148 ~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Iv 1225 (1252)
                      +||||.+|+++|||+|..+|+||||||||.++|..+.+.|++.|+++. +|.+||+||..++++. .||||+||.+|+|+
T Consensus       401 ~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~  480 (500)
T COG1129         401 TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIV  480 (500)
T ss_pred             cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEE
Confidence            699999999999999999999999999999999999999999999986 6899999999999885 79999999999998


Q ss_pred             EecChhh
Q 000856         1226 EQGSHSE 1232 (1252)
Q Consensus      1226 e~G~~~e 1232 (1252)
                      ..=+.++
T Consensus       481 ~e~~~~~  487 (500)
T COG1129         481 GELDREE  487 (500)
T ss_pred             EEecccc
Confidence            7544433

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=9.4e-64  Score=660.61  Aligned_cols=213  Identities=22%  Similarity=0.384  Sum_probs=177.7

Q ss_pred             cEEEEeEEEECCCC----------CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC--CCceEEECCccc
Q 000856         1009 EIELRHVDFAYPSR----------PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP--TAGKVMIDGKDI 1076 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p--~~G~I~idG~di 1076 (1252)
                      .+.|+||++..+..          ....+|+|+|++|+|||.+||+||||||||||+++|+|..++  .+|+|.+||.+.
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~  946 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK  946 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence            69999999987421          123699999999999999999999999999999999999873  789999999886


Q ss_pred             CCCCHHHHhcccEEEccccccCc-ccHHHHhccCC----C-CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCC
Q 000856         1077 RRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGK----E-GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERG 1146 (1252)
Q Consensus      1077 ~~~~~~~lR~~i~~VpQd~~lf~-gTIreNl~~~~----~-~~~de----ei~~al~~~~l~~~i~~lp~gldt~vge~G 1146 (1252)
                      ++   ..+|+.++||+|++.++. .|++|||.++.    + ..+.+    .+.++++..++.+.       .|+.+|..+
T Consensus       947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~ 1016 (1470)
T PLN03140        947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPG 1016 (1470)
T ss_pred             Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCC
Confidence            42   456788999999987665 69999997641    1 22332    25667777776543       466676544


Q ss_pred             -CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchh-h-hccCEEEEEeC-
Q 000856         1147 -VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLST-I-RGVDCIGVVQD- 1221 (1252)
Q Consensus      1147 -~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~t-i-~~~DrI~vl~~- 1221 (1252)
                       ..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. +|+|||+++|+++. + ..+|++++|++ 
T Consensus      1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140       1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred             CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence             6799999999999999999999999999999999999999999999875 58999999999984 4 67899999996 


Q ss_pred             CEEEEecChh
Q 000856         1222 GRIVEQGSHS 1231 (1252)
Q Consensus      1222 G~Ive~G~~~ 1231 (1252)
                      |+++.+|++.
T Consensus      1097 G~~v~~G~~~ 1106 (1470)
T PLN03140       1097 GQVIYSGPLG 1106 (1470)
T ss_pred             CEEEEECCcc
Confidence            8999999864

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=8.8e-64  Score=624.83  Aligned_cols=200  Identities=28%  Similarity=0.458  Sum_probs=165.5

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      -|+++||+++|++   .++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+ |.++          +|
T Consensus       319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i  384 (635)
T PRK11147        319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV  384 (635)
T ss_pred             eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence            4899999999963   35999999999999999999999999999999999999999999999 4332          59


Q ss_pred             EEEcccc-ccCc-ccHHHHhccCCCCC--C--HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1089 GLVQQEP-ALFA-ASIFDNIAYGKEGA--T--EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1089 ~~VpQd~-~lf~-gTIreNl~~~~~~~--~--deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      +|++|++ .++. .|+++|+.++.+..  .  +.++.+.++..++.+      +..+.++    ..||||||||++||||
T Consensus       385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSgGekqRl~la~a  454 (635)
T PRK11147        385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP------KRAMTPV----KALSGGERNRLLLARL  454 (635)
T ss_pred             EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH------HHHhChh----hhCCHHHHHHHHHHHH
Confidence            9999986 3554 59999998653221  1  344555566655531      1123444    3599999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEe-CCEEEEe-cChhhhh
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQ-DGRIVEQ-GSHSELV 1234 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~-~G~Ive~-G~~~eLl 1234 (1252)
                      ++.+|++|||||||++||..+...+.+.|++.  +.|||+|||+++.+. -||+|++|+ +|+|.++ |++++.+
T Consensus       455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~  527 (635)
T PRK11147        455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR  527 (635)
T ss_pred             HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence            99999999999999999999999999999876  469999999999886 489999998 8999875 6777664

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=6.5e-64  Score=623.16  Aligned_cols=200  Identities=29%  Similarity=0.469  Sum_probs=165.4

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcc
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1087 (1252)
                      .-++++||+++|++.  .++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.+++           +.+
T Consensus       507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~  573 (718)
T PLN03073        507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR  573 (718)
T ss_pred             ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence            359999999999532  3589999999999999999999999999999999999999999999875           357


Q ss_pred             cEEEccccccCcccHHHHhcc----CCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHH
Q 000856         1088 IGLVQQEPALFAASIFDNIAY----GKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 1163 (1252)
Q Consensus      1088 i~~VpQd~~lf~gTIreNl~~----~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAL 1163 (1252)
                      ++|+||++. ...++.+|...    ..+..+++++.++++..++.+...      +.+    ...||||||||++||||+
T Consensus       574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~------~~~----~~~LSgGqkqRvaLAraL  642 (718)
T PLN03073        574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA------LQP----MYTLSGGQKSRVAFAKIT  642 (718)
T ss_pred             EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh------cCC----ccccCHHHHHHHHHHHHH
Confidence            999999973 22345555321    123456778888888888853211      122    346999999999999999


Q ss_pred             ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEE-EecChhhh
Q 000856         1164 LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIV-EQGSHSEL 1233 (1252)
Q Consensus      1164 l~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Iv-e~G~~~eL 1233 (1252)
                      +++|++|||||||++||+.+...+.+.+.+. + .|||+|||+++.+.. ||+|++|++|+++ ..|++++.
T Consensus       643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~  712 (718)
T PLN03073        643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY  712 (718)
T ss_pred             hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence            9999999999999999999999999999875 3 499999999999865 8999999999998 56777654

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=3.9e-61  Score=600.92  Aligned_cols=530  Identities=15%  Similarity=0.118  Sum_probs=431.1

Q ss_pred             HHHHHHhhchhhH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccCCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000856           26 FFQLFSFADKYDW----CLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSS  101 (1252)
Q Consensus        26 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (1252)
                      ++++++|..|+.+    ..+++.+++.++...+....+++.+.++|.+...+  ...+...+..++++++++.++..+..
T Consensus        79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~--~~~f~~~l~~~~l~~~~~~~~~~~~~  156 (659)
T TIGR00954        79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRS--PRNFAWILFKWFLIAPPASFINSAIK  156 (659)
T ss_pred             HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777777654    24556666666666777777778899999876432  22222223334444555566666777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          102 YAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGF  181 (1252)
Q Consensus       102 ~~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~  181 (1252)
                      |+..++......++..++|.+++++....++.+||+  ++|++.+|+++|++.+.+.+...+..++..++.+++.++.++
T Consensus       157 ~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~  234 (659)
T TIGR00954       157 YLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLL  234 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788888888888999999999999988888999984  689999999999999999999999999999999988888777


Q ss_pred             H-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHHH
Q 000856          182 V-SAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKL  260 (1252)
Q Consensus       182 ~-~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~  260 (1252)
                      . ++|.+++++++.+|+..++..++.+++.+...+.++..++..+...|.++|+++||+|+.|+.+.+++.+..++..+.
T Consensus       235 ~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~  314 (659)
T TIGR00954       235 TALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEH  314 (659)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            6 999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-c----CccCHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHH
Q 000856          261 GYKAGMAKGLGLGCTYGIACM--SWALVFWYAGVFIR-N----GVTDGGKAFTA-IFS---AIVGGMSLGQSFSNLGAFS  329 (1252)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~-~----~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~  329 (1252)
                      ..+..++.+...++..++...  ..++.++.|...+. .    |.+|.|..+.. +.+   +.....|+..+...+..++
T Consensus       315 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~  394 (659)
T TIGR00954       315 LNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMT  394 (659)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888777777666542  22222333343332 2    67888876553 222   2334568888888899999


Q ss_pred             HHHHHHHHHHHHHccCCCCCC---------CCCCC-------------CcCCCCcccEEEEeEEEECCCCCCCcccccee
Q 000856          330 KGKAAGYKLMEIIKQKPSIIQ---------DPTNG-------------RCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFS  387 (1252)
Q Consensus       330 ~~~~s~~ri~~~l~~~~~~~~---------~~~~~-------------~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~  387 (1252)
                      ++.++.+|+.++++.+++...         +....             .......+.|+++|++|+|+++  .++|+|+|
T Consensus       395 ~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~is  472 (659)
T TIGR00954       395 RLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLS  472 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeecce
Confidence            999999999999975432110         00000             0011123469999999999742  35899999


Q ss_pred             EEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCC--
Q 000856          388 IFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGK--  465 (1252)
Q Consensus       388 l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~--  465 (1252)
                      |++++||+++|+||||||||||+++|+|+++|++|+|.+++           +++++||+|+|+++++|++||+.++.  
T Consensus       473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~  541 (659)
T TIGR00954       473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSS  541 (659)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCCh
Confidence            99999999999999999999999999999999999999875           46799999999999999999999874  


Q ss_pred             -----CCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHH
Q 000856          466 -----PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES  540 (1252)
Q Consensus       466 -----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~  540 (1252)
                           +..+++++.++++.+++.++++. |.|++|..+ .+.+||||||||++||||++++|+++|||||||+||+++++
T Consensus       542 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~  619 (659)
T TIGR00954       542 EDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG  619 (659)
T ss_pred             hhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence                 23456788889999999998877 899999876 57799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeC
Q 000856          541 IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ  576 (1252)
Q Consensus       541 ~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~  576 (1252)
                      .+.+.+++.  |+|+|+||||++.+..||++++|+.
T Consensus       620 ~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~  653 (659)
T TIGR00954       620 YMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG  653 (659)
T ss_pred             HHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence            999999774  8999999999999999999999973

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=2.6e-63  Score=608.08  Aligned_cols=192  Identities=23%  Similarity=0.320  Sum_probs=163.8

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      -++++|++++|.+    ..|+++||+|++||++||+|+||||||||+++|+|+.+|++|+|.++             .++
T Consensus       340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i  402 (590)
T PRK13409        340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI  402 (590)
T ss_pred             EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence            4899999999952    25999999999999999999999999999999999999999999986             159


Q ss_pred             EEEcccccc-CcccHHHHhccCCCCC-CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 000856         1089 GLVQQEPAL-FAASIFDNIAYGKEGA-TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 1166 (1252)
Q Consensus      1089 ~~VpQd~~l-f~gTIreNl~~~~~~~-~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 1166 (1252)
                      +|+||++.+ +..|+++|+.++.... .+..+.++++..++.+...       .++    ..||||||||++|||||+++
T Consensus       403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-------~~~----~~LSGGe~QRvaiAraL~~~  471 (590)
T PRK13409        403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-------KNV----KDLSGGELQRVAIAACLSRD  471 (590)
T ss_pred             EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-------CCc----ccCCHHHHHHHHHHHHHhcC
Confidence            999999864 5679999998653222 2344567788887765433       333    46999999999999999999


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 000856         1167 PAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGS 1229 (1252)
Q Consensus      1167 p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~ 1229 (1252)
                      |++|||||||++||+++...+.+.|+++.+  ++|+|+|||+++.+.. ||||++|++ ++...|+
T Consensus       472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~  536 (590)
T PRK13409        472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH  536 (590)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence            999999999999999999999999998753  7899999999998864 899999975 8877776

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=1.4e-62  Score=550.42  Aligned_cols=465  Identities=26%  Similarity=0.459  Sum_probs=363.7

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCH-HHHhhh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL-RWLRDQ  442 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~  442 (1252)
                      .++++|++++||   ...+++||||++++||++||+|+||+|||||+++|.|+|+|++|+|++||++++-.++ +..+..
T Consensus         4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G   80 (501)
T COG3845           4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG   80 (501)
T ss_pred             eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence            589999999997   4569999999999999999999999999999999999999999999999999987665 467778


Q ss_pred             ceEEccCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      ||+|.|++.|++. ||.|||.+|.+......+........+.+..+.+  |++-...+...+||-||||||.|-+|||++
T Consensus        81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~  158 (501)
T COG3845          81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYRG  158 (501)
T ss_pred             CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence            9999999999977 9999999997643111111111222233444555  777788888999999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhcccchHHHH
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKAGAYASLI  599 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~  599 (1252)
                      |++||||||||-|-|...+.+++.++++. .|+|||+|||++.++.. |||+-||++|+++...++  .           
T Consensus       159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~--~-----------  225 (501)
T COG3845         159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP--V-----------  225 (501)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecC--C-----------
Confidence            99999999999999999999999999986 59999999999999987 899999999998643210  0           


Q ss_pred             HHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCcccccccccccccCCCCCchHHHHHHHh
Q 000856          600 RFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAPDGYFLRLLKL  679 (1252)
Q Consensus       600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (1252)
                                      ..                        .      .. .                      .+.  
T Consensus       226 ----------------~~------------------------~------t~-~----------------------ela--  234 (501)
T COG3845         226 ----------------AE------------------------T------TE-E----------------------ELA--  234 (501)
T ss_pred             ----------------CC------------------------C------CH-H----------------------HHH--
Confidence                            00                        0      00 0                      000  


Q ss_pred             hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          680 NAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENL  759 (1252)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  759 (1252)
                                                                                                      
T Consensus       235 --------------------------------------------------------------------------------  234 (501)
T COG3845         235 --------------------------------------------------------------------------------  234 (501)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          760 TTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGT  839 (1252)
Q Consensus       760 ~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~  839 (1252)
                                                      ++                                              
T Consensus       235 --------------------------------~l----------------------------------------------  236 (501)
T COG3845         235 --------------------------------EL----------------------------------------------  236 (501)
T ss_pred             --------------------------------HH----------------------------------------------
Confidence                                            00                                              


Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000856          840 YPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGI  919 (1252)
Q Consensus       840 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  919 (1252)
                                                                                                      
T Consensus       237 --------------------------------------------------------------------------------  236 (501)
T COG3845         237 --------------------------------------------------------------------------------  236 (501)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCC
Q 000856          920 SQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPD  999 (1252)
Q Consensus       920 ~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~~~~~~~~~  999 (1252)
                                        ++.. .+                                           ....+       
T Consensus       237 ------------------MvG~-~v-------------------------------------------~~~~~-------  247 (501)
T COG3845         237 ------------------MVGR-EV-------------------------------------------VLRVV-------  247 (501)
T ss_pred             ------------------hcCC-cc-------------------------------------------ccccc-------
Confidence                              0000 00                                           00000       


Q ss_pred             CCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCccc-CC
Q 000856         1000 AEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI-RR 1078 (1252)
Q Consensus      1000 ~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di-~~ 1078 (1252)
                      ..+..|.+.-++++|++..-+ + +.+.+++|||++++||++||.|-.|.|-+.|+.+|+|+.+|.+|+|.++|.|+ ..
T Consensus       248 ~~~~~pg~~vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~  325 (501)
T COG3845         248 KPPSTPGEVVLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGR  325 (501)
T ss_pred             cCCCCCCCeEEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEecccc
Confidence            001112233589999998643 2 34689999999999999999999999999999999999999999999999997 66


Q ss_pred             CCHHHHh-cccEEEccccc----cCcccHHHHhccCCCC---------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCC
Q 000856         1079 LNLKSLR-LKIGLVQQEPA----LFAASIFDNIAYGKEG---------ATEAEVVEAARAANVHGFVSALPNAYKTPVGE 1144 (1252)
Q Consensus      1079 ~~~~~lR-~~i~~VpQd~~----lf~gTIreNl~~~~~~---------~~deei~~al~~~~l~~~i~~lp~gldt~vge 1144 (1252)
                      .++...| ..++|||.|.+    ....|+.||+.++...         ..-.++.+.++.. +.+| +=.+.+.++++  
T Consensus       326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~l-i~~f-dVr~~~~~~~a--  401 (501)
T COG3845         326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAREL-IEEF-DVRAPSPDAPA--  401 (501)
T ss_pred             CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHH-HHHc-CccCCCCCcch--
Confidence            6777654 56999999985    6788999999765321         1223333222211 1111 11134555555  


Q ss_pred             CCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhh-hccCEEEEEeCC
Q 000856         1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDG 1222 (1252)
Q Consensus      1145 ~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti-~~~DrI~vl~~G 1222 (1252)
                        .+||||+.||+-+||-|.++|++||..+||-+||..+.+.|++.|.+.. +|+.|++|+-+++.+ .-||||.||.+|
T Consensus       402 --~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~G  479 (501)
T COG3845         402 --RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEG  479 (501)
T ss_pred             --hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCC
Confidence              4699999999999999999999999999999999999999999998876 689999999999988 458999999999


Q ss_pred             EEEEecChhh
Q 000856         1223 RIVEQGSHSE 1232 (1252)
Q Consensus      1223 ~Ive~G~~~e 1232 (1252)
                      +|+...++++
T Consensus       480 ri~~~~~~~~  489 (501)
T COG3845         480 RIVGIVPPEE  489 (501)
T ss_pred             ceeccccccc
Confidence            9998877765

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=1.5e-60  Score=595.66  Aligned_cols=530  Identities=14%  Similarity=0.133  Sum_probs=435.1

Q ss_pred             HHHHHHHhhCCchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHHHHHH
Q 000856          672 YFLRLLKLNAPEWP-----YSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYL  746 (1252)
Q Consensus       672 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  746 (1252)
                      .+++++++..|.+.     .+++.+++.++..++....+++.+.+++.....+..........+.++++++.++..+..+
T Consensus        78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~  157 (659)
T TIGR00954        78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKY  157 (659)
T ss_pred             HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777765     4556666667777778888888888888765433221111122344444555555666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          747 IQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAF  826 (1252)
Q Consensus       747 ~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~  826 (1252)
                      +..++......++..++|++.+++....++.|||.   +.|++.+|+++|++.+.+.+...+..++..++.++++++.++
T Consensus       158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~  234 (659)
T TIGR00954       158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLL  234 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777778888888899999999888889999974   679999999999999999999999999999999998888777


Q ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHH
Q 000856          827 I-VEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQ  905 (1252)
Q Consensus       827 ~-~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~  905 (1252)
                      . .+|.+++++++.+|+.+++..+..+...+..++.++..+...+.+.|.++|+++||+|+.++.+.+++.+..++..+.
T Consensus       235 ~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~  314 (659)
T TIGR00954       235 TALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEH  314 (659)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            6 899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-c----CCCCHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHH
Q 000856          906 TLRRSLTAGILFGISQFALHA--SEALILWYGVHLVG-K----GVSTFSKVIKV-FVV---LVVTANSVAETVSLAPEII  974 (1252)
Q Consensus       906 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~lv~-~----g~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~  974 (1252)
                      ..+..+.......+..++...  ...+.++.|...+. .    |.++.|.+++. ..+   ......|+..+.....++.
T Consensus       315 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~  394 (659)
T TIGR00954       315 LNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMT  394 (659)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988888888888877777543  23333334443332 2    67888877663 333   4455788999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCC------CCCCC---C-------------CCCCCccccEEEEeEEEECCCCCCccceeeee
Q 000856          975 RGGESVGSVFSTLDRSTRID------PDDPD---A-------------EPVETIRGEIELRHVDFAYPSRPDVVVFKDFN 1032 (1252)
Q Consensus       975 ~~~~s~~ri~~~~~~~~~~~------~~~~~---~-------------~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~is 1032 (1252)
                      +...+.+|+.++++.+++..      +..++   .             .......+.|+++||+|+|+++  .++|+|+|
T Consensus       395 ~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~is  472 (659)
T TIGR00954       395 RLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLS  472 (659)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeeecce
Confidence            99999999999987533211      00000   0             0011133569999999999632  36999999


Q ss_pred             EEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCC--
Q 000856         1033 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK-- 1110 (1252)
Q Consensus      1033 l~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~-- 1110 (1252)
                      |+|++||++||+||||||||||+++|+|+++|++|+|.+|+           |++++||||+|.+|++|++||+.++.  
T Consensus       473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~  541 (659)
T TIGR00954       473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSS  541 (659)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCCh
Confidence            99999999999999999999999999999999999999874           67899999999999999999999863  


Q ss_pred             -----CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHH
Q 000856         1111 -----EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 1185 (1252)
Q Consensus      1111 -----~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~ 1185 (1252)
                           ++.++++++++++.+++.++++. |.|+||..+ .+.+||||||||++||||++++|++||||||||+||+++++
T Consensus       542 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~  619 (659)
T TIGR00954       542 EDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG  619 (659)
T ss_pred             hhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence                 34678899999999999999987 999999986 46799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeC
Q 000856         1186 VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 1221 (1252)
Q Consensus      1186 ~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~ 1221 (1252)
                      .+++.+++.  ++|+|+||||++++..||+|++|+.
T Consensus       620 ~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~  653 (659)
T TIGR00954       620 YMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG  653 (659)
T ss_pred             HHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence            999999874  8999999999999999999999973

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=4.1e-62  Score=579.39  Aligned_cols=485  Identities=27%  Similarity=0.417  Sum_probs=348.4

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++++|++   +++|+|+||++.+|+++||||+||||||||+|+|+|...|++|+|...+.           -++
T Consensus         3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v   68 (530)
T COG0488           3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV   68 (530)
T ss_pred             eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence            4889999999964   45999999999999999999999999999999999999999999998762           269


Q ss_pred             eEEccCCCCchh-cHHHHHhcCCCCCC--HHHHHHHH------------------H-------HhcHHHHHhhCCCCccc
Q 000856          444 GLVNQEPALFAT-TILENILYGKPEAT--MAEVEAAA------------------S-------AANAHSFITLLPNGYST  495 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-tv~~ni~~~~~~~~--~~~~~~~~------------------~-------~~~~~~~~~~~~~g~~~  495 (1252)
                      +|++|++.+.+. ||.+.+..+.....  ..+.+.+.                  .       .+.+...+..+  |+..
T Consensus        69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~  146 (530)
T COG0488          69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD  146 (530)
T ss_pred             EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence            999999999866 99999987743210  01111110                  0       01222333333  5555


Q ss_pred             cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEE
Q 000856          496 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVI  574 (1252)
Q Consensus       496 ~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l  574 (1252)
                      . .....+||||||.||+|||||+.+||+|||||||++||.++..++.+.|.+.. | |+|+||||.+++.. |++|+.+
T Consensus       147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I~~l  223 (530)
T COG0488         147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHILEL  223 (530)
T ss_pred             c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhheEEe
Confidence            4 66778999999999999999999999999999999999999999999998764 5 99999999999988 7999999


Q ss_pred             eCCEEE-EecChHHHHhcccchHHHHHHHHhhcccCCCCCCcccccccccccccccccccccccccccCCccccCCCCcc
Q 000856          575 QQGQVV-ETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGR  653 (1252)
Q Consensus       575 ~~G~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  653 (1252)
                      +.|++. +.|+++..++..          ..........                                         
T Consensus       224 d~g~l~~y~Gny~~~~~~r----------~~~~~~~~~~-----------------------------------------  252 (530)
T COG0488         224 DRGKLTPYKGNYSSYLEQK----------AERLRQEAAA-----------------------------------------  252 (530)
T ss_pred             cCCceeEecCCHHHHHHHH----------HHHHHHHHHH-----------------------------------------
Confidence            999875 455554443321          1000000000                                         


Q ss_pred             cccccccccccCCCCCchHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHH
Q 000856          654 IEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFI  733 (1252)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  733 (1252)
                                         +.+                                                          
T Consensus       253 -------------------~~~----------------------------------------------------------  255 (530)
T COG0488         253 -------------------YEK----------------------------------------------------------  255 (530)
T ss_pred             -------------------HHH----------------------------------------------------------
Confidence                               000                                                          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHHH
Q 000856          734 YIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQ  813 (1252)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~~  813 (1252)
                                                    .++..++..               ..+.|+                    
T Consensus       256 ------------------------------~~~~~~~~~---------------~~i~r~--------------------  270 (530)
T COG0488         256 ------------------------------QQKELAKEQ---------------EWIRRG--------------------  270 (530)
T ss_pred             ------------------------------HHHHHHHHH---------------HHHHHH--------------------
Confidence                                          000000000               000000                    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHHH
Q 000856          814 NMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILS  893 (1252)
Q Consensus       814 ~~~~~~~~~i~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~  893 (1252)
                                                                                                      
T Consensus       271 --------------------------------------------------------------------------------  270 (530)
T COG0488         271 --------------------------------------------------------------------------------  270 (530)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          894 LFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEI  973 (1252)
Q Consensus       894 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  973 (1252)
                        ........++                                                                    
T Consensus       271 --~~~~~~~k~a--------------------------------------------------------------------  280 (530)
T COG0488         271 --KAAASKAKKA--------------------------------------------------------------------  280 (530)
T ss_pred             --HhccchHHHH--------------------------------------------------------------------
Confidence              0000000000                                                                    


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCCCCC---CCCC--CCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCC
Q 000856          974 IRGGESVGSVFSTLDRSTRIDPDDPD---AEPV--ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASG 1048 (1252)
Q Consensus       974 ~~~~~s~~ri~~~~~~~~~~~~~~~~---~~~~--~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SG 1048 (1252)
                      ..-....+++.+......+.....+.   .++.  ...+.-++++|++++|++.  +++++++||.|.+|++||||||||
T Consensus       281 ~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG  358 (530)
T COG0488         281 KSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNG  358 (530)
T ss_pred             HHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCC
Confidence            00000011111000000000000000   0011  1223468999999999643  469999999999999999999999


Q ss_pred             CChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEEEcccc-ccC-cccHHHHhccCCCCCCHHHHHHHHHHcC
Q 000856         1049 SGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP-ALF-AASIFDNIAYGKEGATEAEVVEAARAAN 1126 (1252)
Q Consensus      1049 SGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~-~lf-~gTIreNl~~~~~~~~deei~~al~~~~ 1126 (1252)
                      +|||||+++|.|-..|.+|+|.++-           .-++||.+|+. .++ +.|+-|++.-..++..+.++...|.+.+
T Consensus       359 ~GKSTLlk~l~g~~~~~~G~v~~g~-----------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~  427 (530)
T COG0488         359 AGKSTLLKLLAGELGPLSGTVKVGE-----------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG  427 (530)
T ss_pred             CCHHHHHHHHhhhcccCCceEEeCC-----------ceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence            9999999999999999999999863           13599999998 344 4489999987666666889999999988


Q ss_pred             chhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecC
Q 000856         1127 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHR 1206 (1252)
Q Consensus      1127 l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHr 1206 (1252)
                      +..-      -..++|+    .||||||-|+.||+.++.+|.+|||||||.+||.+|...+.++|.+.  .-|||+|||+
T Consensus       428 F~~~------~~~~~v~----~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHD  495 (530)
T COG0488         428 FTGE------DQEKPVG----VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHD  495 (530)
T ss_pred             CChH------HHhCchh----hcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCC
Confidence            8642      2345554    59999999999999999999999999999999999999999999886  4499999999


Q ss_pred             chhhhc-cCEEEEEeCCEEEEe-cChhhhhcC
Q 000856         1207 LSTIRG-VDCIGVVQDGRIVEQ-GSHSELVSR 1236 (1252)
Q Consensus      1207 l~ti~~-~DrI~vl~~G~Ive~-G~~~eLl~~ 1236 (1252)
                      .+.+.. |++|+++++ ++.++ |.+++..+.
T Consensus       496 r~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~  526 (530)
T COG0488         496 RYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ  526 (530)
T ss_pred             HHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence            999976 699999999 88877 788777654

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=9.3e-53  Score=468.31  Aligned_cols=237  Identities=23%  Similarity=0.424  Sum_probs=223.3

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcc
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1087 (1252)
                      |+|+|+||+++|+.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++ ++|+|++||+++..++...+|++
T Consensus         1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~   78 (275)
T cd03289           1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA   78 (275)
T ss_pred             CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence            469999999999632 3469999999999999999999999999999999999998 79999999999999999999999


Q ss_pred             cEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 000856         1088 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 1167 (1252)
Q Consensus      1088 i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p 1167 (1252)
                      ++||||+|.+|++|+++|+++.. ..++++++++++.+++.+++..+|+++++.++++|.+||||||||+|||||++++|
T Consensus        79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p  157 (275)
T cd03289          79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA  157 (275)
T ss_pred             EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999998543 36789999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcCCCchhHHHHHH
Q 000856         1168 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247 (1252)
Q Consensus      1168 ~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~l~~~ 1247 (1252)
                      +||||||||++||+.++..+++.|++.+.++|+|+||||++++..||||++|++|++++.|+|++|+++ .+.|++++..
T Consensus       158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~  236 (275)
T cd03289         158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP  236 (275)
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence            999999999999999999999999988889999999999999999999999999999999999999996 6888888875


Q ss_pred             h
Q 000856         1248 Q 1248 (1252)
Q Consensus      1248 q 1248 (1252)
                      .
T Consensus       237 ~  237 (275)
T cd03289         237 S  237 (275)
T ss_pred             c
Confidence            4

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6e-52  Score=417.36  Aligned_cols=219  Identities=33%  Similarity=0.545  Sum_probs=190.0

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccC-CCHHHHhhh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT-LQLRWLRDQ  442 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~-~~~~~~~~~  442 (1252)
                      .|+++|++++|++   ..+|+|||++|++||+++|+||||||||||+++|+|+..|++|+|.+||.++.. .+...+|++
T Consensus         2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~   78 (240)
T COG1126           2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK   78 (240)
T ss_pred             eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence            3899999999974   359999999999999999999999999999999999999999999999987743 367889999


Q ss_pred             ceEEccCCCCchh-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM  518 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-tv~~ni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal  518 (1252)
                      +|+|||+..||+. ||.||+.++.-.   ...++..+     .+.+.++..  |+.......+.+|||||||||||||||
T Consensus        79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~-----~A~~lL~~V--GL~~ka~~yP~qLSGGQqQRVAIARAL  151 (240)
T COG1126          79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEARE-----KALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL  151 (240)
T ss_pred             cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHH-----HHHHHHHHc--CchhhhhhCccccCcHHHHHHHHHHHH
Confidence            9999999999987 999999987431   11222211     112344444  677677777889999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhcc
Q 000856          519 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       519 ~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      +.+|+++|+|||||||||+...++.+.++++. .|.|.|+|||.+.+++. ||||+.|++|+|+++|+++++..+.
T Consensus       152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p  227 (240)
T COG1126         152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP  227 (240)
T ss_pred             cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence            99999999999999999999999999999986 58999999999999988 6999999999999999999987653

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-50  Score=405.45  Aligned_cols=218  Identities=31%  Similarity=0.564  Sum_probs=196.1

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccC-CCCHHHHhcc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR-RLNLKSLRLK 1087 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~-~~~~~~lR~~ 1087 (1252)
                      -|+++||+.+|.   +..||+|||++|++||+++|+||||||||||+++|.+|.+|++|+|.+||.++. ..+...+|++
T Consensus         2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~   78 (240)
T COG1126           2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK   78 (240)
T ss_pred             eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence            389999999996   346999999999999999999999999999999999999999999999998774 3378899999


Q ss_pred             cEEEccccccCc-ccHHHHhccCCC---CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 000856         1088 IGLVQQEPALFA-ASIFDNIAYGKE---GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 1159 (1252)
Q Consensus      1088 i~~VpQd~~lf~-gTIreNl~~~~~---~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 1159 (1252)
                      +|+|+|+..||+ -|+.||+.++.-   ..+    ++...+.|+++|+.|..+..|           ..|||||+||+||
T Consensus        79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI  147 (240)
T COG1126          79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI  147 (240)
T ss_pred             cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence            999999999995 699999987621   122    344577889999999888877           4699999999999


Q ss_pred             HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcCC
Q 000856         1160 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRP 1237 (1252)
Q Consensus      1160 ARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~~ 1237 (1252)
                      ||||.-+|+++++|||||||||+.-.++.+.++++. .|.|.|+|||.+..+++ +|||+.||+|+|+|.|+|+++..+|
T Consensus       148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p  227 (240)
T COG1126         148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP  227 (240)
T ss_pred             HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence            999999999999999999999999999999999987 58899999999999987 5999999999999999999999987


Q ss_pred             Cch
Q 000856         1238 DGA 1240 (1252)
Q Consensus      1238 ~g~ 1240 (1252)
                      ...
T Consensus       228 ~~~  230 (240)
T COG1126         228 KSE  230 (240)
T ss_pred             CCH
Confidence            654

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=100.00  E-value=1.6e-48  Score=437.31  Aligned_cols=194  Identities=30%  Similarity=0.424  Sum_probs=164.1

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      -|.|+||+|.|++.+  .+++++||-|..++++|+|||||+|||||+|++.|...|+.|.|.-.-           .-++
T Consensus       389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~-----------H~~~  455 (614)
T KOG0927|consen  389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS-----------HNKL  455 (614)
T ss_pred             eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc-----------cccc
Confidence            599999999997543  689999999999999999999999999999999999999999886542           2234


Q ss_pred             EEEcccc---ccCcccHHHHhccCCCC-CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 000856         1089 GLVQQEP---ALFAASIFDNIAYGKEG-ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 1164 (1252)
Q Consensus      1089 ~~VpQd~---~lf~gTIreNl~~~~~~-~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl 1164 (1252)
                      ++..|+-   .-++-|.-|++.+-.++ ...+++...+.+.|+..-.+..      ++    .+||+|||.|++.||.++
T Consensus       456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~------p~----~~LS~Gqr~rVlFa~l~~  525 (614)
T KOG0927|consen  456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVV------PM----SQLSDGQRRRVLFARLAV  525 (614)
T ss_pred             hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCcccccc------ch----hhcccccchhHHHHHHHh
Confidence            4444543   35677888898766553 6778889999999997544433      34    369999999999999999


Q ss_pred             cCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 000856         1165 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQ 1227 (1252)
Q Consensus      1165 ~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~ 1227 (1252)
                      +.|.||+|||||+|||.++-..+.++|+++  ..+||+|||+...|.. +++|++.+||.+...
T Consensus       526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~  587 (614)
T KOG0927|consen  526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKW  587 (614)
T ss_pred             cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeec
Confidence            999999999999999999999999999986  4589999999999976 599999999998653

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2e-49  Score=419.64  Aligned_cols=220  Identities=40%  Similarity=0.639  Sum_probs=194.8

Q ss_pred             EEEEeEEEECCCC--CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCC---HHHH
Q 000856         1010 IELRHVDFAYPSR--PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSL 1084 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~--~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~---~~~l 1084 (1252)
                      |+++|||+.|+..  ....+|+||||+|++||+.||+|+||||||||++++.++-+|++|+|.+||+|+..++   +..+
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~   81 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL   81 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence            7999999999752  1246999999999999999999999999999999999999999999999999887766   5667


Q ss_pred             hcccEEEccccccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 000856         1085 RLKIGLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 1157 (1252)
Q Consensus      1085 R~~i~~VpQd~~lf~-gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1157 (1252)
                      |++||+|+|++.|++ .|+.+|++|+..  ..+    ++.+.+.|+.+|+.|+...-|           .+||||||||+
T Consensus        82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV  150 (339)
T COG1135          82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV  150 (339)
T ss_pred             HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence            899999999999997 899999998632  233    345667778888887766655           58999999999


Q ss_pred             HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000856         1158 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1158 aLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      +|||||..+|+||+.|||||||||+|-+.|.+.|++.-  -|-|+++|||-++.+++ |||+.||++|+|+|.|+..++.
T Consensus       151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF  230 (339)
T COG1135         151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF  230 (339)
T ss_pred             HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence            99999999999999999999999999999999998864  38899999999999976 8999999999999999999999


Q ss_pred             cCCCch
Q 000856         1235 SRPDGA 1240 (1252)
Q Consensus      1235 ~~~~g~ 1240 (1252)
                      .+|...
T Consensus       231 ~~Pk~~  236 (339)
T COG1135         231 ANPKHA  236 (339)
T ss_pred             cCcchH
Confidence            887543

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.7e-49  Score=420.16  Aligned_cols=223  Identities=38%  Similarity=0.581  Sum_probs=193.1

Q ss_pred             EEEEeEEEECCCC--CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHH---HH
Q 000856          365 IEFKNVTFSYPSR--PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WL  439 (1252)
Q Consensus       365 i~~~~v~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~  439 (1252)
                      |+++||++.|+..  ....+|+|+||+|++||+.||+|.||+|||||++++.++..|++|+|.+||+|+..++..   ..
T Consensus         2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~   81 (339)
T COG1135           2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL   81 (339)
T ss_pred             eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence            7899999999853  235699999999999999999999999999999999999999999999999998877654   56


Q ss_pred             hhhceEEccCCCCch-hcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000856          440 RDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM  518 (1252)
Q Consensus       440 ~~~i~~v~Q~~~l~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal  518 (1252)
                      |++|||+||++.|++ .||.+|++|+.+-+...+-+...+..++.+.+     |+....+..+.+|||||||||+|||||
T Consensus        82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV-----gL~dk~~~yP~qLSGGQKQRVaIARAL  156 (339)
T COG1135          82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV-----GLSDKADRYPAQLSGGQKQRVAIARAL  156 (339)
T ss_pred             HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc-----CChhhhccCchhcCcchhhHHHHHHHH
Confidence            778999999999997 59999999986543322222222333333333     777777888899999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhcc
Q 000856          519 LKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       519 ~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      +.+|+|||+|||||||||++.+.+.+.|+++.  .|-|+++|||.++.++. ||||.||++|+++|+|+..++..+.
T Consensus       157 a~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P  233 (339)
T COG1135         157 ANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP  233 (339)
T ss_pred             hcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence            99999999999999999999999999999885  38999999999999988 8999999999999999999987764

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=6.5e-49  Score=402.27  Aligned_cols=218  Identities=34%  Similarity=0.544  Sum_probs=191.0

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      |+|+|||++|.+   ..+++|+||+|++||+++++|||||||||++|+|.|+++|++|+|++||+++++++..++|++||
T Consensus         2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG   78 (309)
T COG1125           2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG   78 (309)
T ss_pred             ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence            789999999973   45899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCchh-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHhhCCCCccc--cccCCCCCCChHHHHHHHHHHHhc
Q 000856          445 LVNQEPALFAT-TILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYST--QVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       445 ~v~Q~~~l~~~-tv~~ni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~g~~LSgGqkqRv~lARal~  519 (1252)
                      ||-|...||+. ||.|||.+-..-.  +.+++.+  +   +.+.+..+  |++.  ...+.+.+|||||+|||.+||||+
T Consensus        79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~--r---~~ELl~lv--gL~p~~~~~RyP~eLSGGQQQRVGv~RALA  151 (309)
T COG1125          79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKK--R---ADELLDLV--GLDPSEYADRYPHELSGGQQQRVGVARALA  151 (309)
T ss_pred             hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHH--H---HHHHHHHh--CCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence            99999999976 9999999754322  2222222  1   22333333  5543  466778899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhcc
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       520 ~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      .+|+|+++|||++||||.+++.+++.+.++.+  ++|+|+||||+++... +|||.+|++|+++..++|++++.+.
T Consensus       152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P  227 (309)
T COG1125         152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP  227 (309)
T ss_pred             cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence            99999999999999999999999999988854  8999999999999865 8999999999999999999998764

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-48  Score=443.24  Aligned_cols=228  Identities=32%  Similarity=0.538  Sum_probs=201.6

Q ss_pred             CCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCcccC-
Q 000856         1004 ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIR- 1077 (1252)
Q Consensus      1004 ~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~-----p~~G~I~idG~di~- 1077 (1252)
                      |+..+.|+|+|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++     |++|+|.+||+|+. 
T Consensus        75 ~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~  153 (329)
T PRK14257         75 FNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS  153 (329)
T ss_pred             CCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence            5666789999999999632 3469999999999999999999999999999999999997     57999999999997 


Q ss_pred             -CCCHHHHhcccEEEccccccCcccHHHHhccCCC--CCCHHHH-----HHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 000856         1078 -RLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GATEAEV-----VEAARAANVHGFVSALPNAYKTPVGERGVQL 1149 (1252)
Q Consensus      1078 -~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~~~deei-----~~al~~~~l~~~i~~lp~gldt~vge~G~~L 1149 (1252)
                       ..++..+|++++||||+|.+|++|+++||.++..  ..++++.     .++++.+++       +.++++.++++|.+|
T Consensus       154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~L  226 (329)
T PRK14257        154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNAL  226 (329)
T ss_pred             cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccC
Confidence             4566789999999999999999999999997532  2444443     445566665       345667889999999


Q ss_pred             ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000856         1150 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1150 SgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1228 (1252)
                      |||||||+|||||++++|+|||||||||+||+++...+++.|++.++++|+|+|||+++++.. ||||+||++|+|+|.|
T Consensus       227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g  306 (329)
T PRK14257        227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG  306 (329)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence            999999999999999999999999999999999999999999999888999999999999987 9999999999999999


Q ss_pred             ChhhhhcCCCc
Q 000856         1229 SHSELVSRPDG 1239 (1252)
Q Consensus      1229 ~~~eLl~~~~g 1239 (1252)
                      +|++++..+..
T Consensus       307 ~~~~l~~~~~~  317 (329)
T PRK14257        307 ETKTIFIHPKN  317 (329)
T ss_pred             CHHHHhcCCCc
Confidence            99999876543

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.6e-49  Score=392.19  Aligned_cols=220  Identities=35%  Similarity=0.567  Sum_probs=199.5

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC-----ceEEECCcccCC--CCH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA-----GKVMIDGKDIRR--LNL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~-----G~I~idG~di~~--~~~ 1081 (1252)
                      .++++|+++.|.   +..+|+|||++|++++++|++|||||||||++++|.|+.+..+     |+|.+||.||.+  ++.
T Consensus         7 ~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~   83 (253)
T COG1117           7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV   83 (253)
T ss_pred             eeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence            589999999996   3469999999999999999999999999999999999999886     999999999975  678


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCCC------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKE------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 1155 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~~------~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1155 (1252)
                      -.+|+++|+|+|.|.-|+.||+||+.||..      ..-||-+.++|+.+.|||.+...       +.+.+..|||||+|
T Consensus        84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr-------L~~sa~~LSGGQQQ  156 (253)
T COG1117          84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR-------LHKSALGLSGGQQQ  156 (253)
T ss_pred             HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH-------hhCCccCCChhHHH
Confidence            899999999999999999999999999832      12245678999999999988642       34566789999999


Q ss_pred             HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000856         1156 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1156 rlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      ||||||||.-+|+||+||||||+|||.+-..|.+.|.++.++-||++|||.+.-..+ +|+...|-+|+++|+|+-+++.
T Consensus       157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF  236 (253)
T COG1117         157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF  236 (253)
T ss_pred             HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence            999999999999999999999999999999999999999999999999999997755 6999999999999999999999


Q ss_pred             cCCC
Q 000856         1235 SRPD 1238 (1252)
Q Consensus      1235 ~~~~ 1238 (1252)
                      .+|.
T Consensus       237 ~~P~  240 (253)
T COG1117         237 TNPK  240 (253)
T ss_pred             cCcc
Confidence            8764

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.2e-47  Score=393.08  Aligned_cols=221  Identities=35%  Similarity=0.574  Sum_probs=198.1

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+|+|||++|.   +..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++||
T Consensus         2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG   78 (309)
T COG1125           2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG   78 (309)
T ss_pred             ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence            79999999996   346999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEccccccCc-ccHHHHhccCC------CCCCHHHHHHHHHHcCch--hhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 000856         1090 LVQQEPALFA-ASIFDNIAYGK------EGATEAEVVEAARAANVH--GFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 1160 (1252)
Q Consensus      1090 ~VpQd~~lf~-gTIreNl~~~~------~~~~deei~~al~~~~l~--~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 1160 (1252)
                      ||-|..-||+ .||.|||+.-.      ....++.+.+.++.+++.  +|....|           ..|||||+||+.+|
T Consensus        79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~  147 (309)
T COG1125          79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA  147 (309)
T ss_pred             hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence            9999999995 69999998531      122345667788888886  3666666           46999999999999


Q ss_pred             HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhhhhcCC
Q 000856         1161 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRP 1237 (1252)
Q Consensus      1161 RALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti-~~~DrI~vl~~G~Ive~G~~~eLl~~~ 1237 (1252)
                      |||..+|+|+++|||.+|||+-+...+|+.+.+..+  ++|+|+|||++++. +-+|||.+|++|+|+.+|+|++++++|
T Consensus       148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P  227 (309)
T COG1125         148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP  227 (309)
T ss_pred             HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence            999999999999999999999999999999988653  89999999999876 668999999999999999999999998


Q ss_pred             CchhHHH
Q 000856         1238 DGAYSRL 1244 (1252)
Q Consensus      1238 ~g~y~~l 1244 (1252)
                      ...|-+-
T Consensus       228 an~FV~~  234 (309)
T COG1125         228 ANDFVED  234 (309)
T ss_pred             cHHHHHH
Confidence            7776543

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.6e-48  Score=384.63  Aligned_cols=219  Identities=32%  Similarity=0.485  Sum_probs=195.8

Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC-----cEEEECCccccC--CC
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA-----GHVLLDNVDIKT--LQ  435 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~-----G~i~~~g~~~~~--~~  435 (1252)
                      ..++++|+++.|++   ..+|+|||++|++++++|++||||||||||++++.+..+..+     |+|.++|+|+.+  .+
T Consensus         6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d   82 (253)
T COG1117           6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD   82 (253)
T ss_pred             ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence            35899999999974   459999999999999999999999999999999999998765     999999999966  57


Q ss_pred             HHHHhhhceEEccCCCCchhcHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHH
Q 000856          436 LRWLRDQIGLVNQEPALFATTILENILYGKPEA------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK  509 (1252)
Q Consensus       436 ~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqk  509 (1252)
                      ...+|++||+|+|.|.-|+.||+||+.||....      -++.++.+++.+.+.+.+..       .+.+.+..|||||+
T Consensus        83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ  155 (253)
T COG1117          83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ  155 (253)
T ss_pred             HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence            889999999999999999999999999984321      13446777888887776543       34567888999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       510 qRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      ||+||||||+-+|+|||||||||||||.+..+|.+.|.+++++-|||+|||.+....+ .|+..++..|+++|.|+.+++
T Consensus       156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i  235 (253)
T COG1117         156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI  235 (253)
T ss_pred             HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence            9999999999999999999999999999999999999999999999999999999887 599999999999999999988


Q ss_pred             Hhc
Q 000856          589 IAK  591 (1252)
Q Consensus       589 ~~~  591 (1252)
                      ..+
T Consensus       236 F~~  238 (253)
T COG1117         236 FTN  238 (253)
T ss_pred             hcC
Confidence            764

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=2e-46  Score=417.55  Aligned_cols=235  Identities=24%  Similarity=0.395  Sum_probs=216.8

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++++|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|++||.++..++...+|+.|
T Consensus         2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i   79 (275)
T cd03289           2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF   79 (275)
T ss_pred             eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence            58999999999642 3458999999999999999999999999999999999997 799999999999988888999999


Q ss_pred             eEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 000856          444 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK  523 (1252)
Q Consensus       444 ~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~  523 (1252)
                      +||||+|.+|++|+++|+....+ .+.++++++++.+++.+++..+|.|+++.++++|.+||||||||++||||++++|+
T Consensus        80 ~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~  158 (275)
T cd03289          80 GVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK  158 (275)
T ss_pred             EEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999963322 45678888999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhcccchHHHHHH
Q 000856          524 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRF  601 (1252)
Q Consensus       524 illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~  601 (1252)
                      |+||||||++||+.+++.+++.|++..+++|+|+||||++++..||||++|++|++++.|+++++.+..+.|+.+...
T Consensus       159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~  236 (275)
T cd03289         159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISP  236 (275)
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhh
Confidence            999999999999999999999999887789999999999999889999999999999999999999977766666643

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=4.4e-46  Score=411.44  Aligned_cols=235  Identities=49%  Similarity=0.789  Sum_probs=217.5

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|++++
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (237)
T cd03252           1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG   79 (237)
T ss_pred             CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence            5789999999632 246999999999999999999999999999999999999999999999999998888888899999


Q ss_pred             EEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 000856         1090 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 1169 (1252)
Q Consensus      1090 ~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~I 1169 (1252)
                      |+||++.+|+.|++||+.++.+..+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++++|++
T Consensus        80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l  159 (237)
T cd03252          80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI  159 (237)
T ss_pred             EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence            99999999999999999886554566777888888999999999999999998888899999999999999999999999


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcCCCchhHHHHH
Q 000856         1170 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 1246 (1252)
Q Consensus      1170 LiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~l~~ 1246 (1252)
                      |||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++++++++ .+.|++++.
T Consensus       160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~  235 (237)
T cd03252         160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ  235 (237)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence            9999999999999999999999998778999999999999988999999999999999999999987 788888765

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=7e-46  Score=413.65  Aligned_cols=241  Identities=34%  Similarity=0.520  Sum_probs=222.8

Q ss_pred             ccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHh
Q 000856         1006 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 1085 (1252)
Q Consensus      1006 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR 1085 (1252)
                      ..+.|+++|++++|+.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.+.+...+|
T Consensus        16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~   94 (257)
T cd03288          16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR   94 (257)
T ss_pred             CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence            45789999999999642 24699999999999999999999999999999999999999999999999999998888999


Q ss_pred             cccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 000856         1086 LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 1165 (1252)
Q Consensus      1086 ~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 1165 (1252)
                      ++++|++|+|.+|++|+++|+.+.. ...+++++++++..++.+++..+|.|+++.+++.+.+||||||||++||||+++
T Consensus        95 ~~i~~v~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~  173 (257)
T cd03288          95 SRLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR  173 (257)
T ss_pred             hhEEEECCCCcccccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999998643 235667888999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcCCCchhHHHH
Q 000856         1166 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 1245 (1252)
Q Consensus      1166 ~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~l~ 1245 (1252)
                      +|++|||||||++||+.++..+.+.+++..+++|+|++||+++.+..||||++|++|++++.|+++++++..++.|+.++
T Consensus       174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  253 (257)
T cd03288         174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV  253 (257)
T ss_pred             CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence            99999999999999999999999999987778999999999999988999999999999999999999987678888887


Q ss_pred             HHh
Q 000856         1246 QLQ 1248 (1252)
Q Consensus      1246 ~~q 1248 (1252)
                      ..+
T Consensus       254 ~~~  256 (257)
T cd03288         254 RTD  256 (257)
T ss_pred             hcc
Confidence            643

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.7e-43  Score=375.34  Aligned_cols=470  Identities=19%  Similarity=0.220  Sum_probs=343.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000856           91 VYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYL  170 (1252)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~s~l~~d~~~i~~~~~~~~~~~~~~~  170 (1252)
                      ..+.++..+++.+........+++.+.++|.++.++++.-|+..+++ .++++++.++++|+..|. +-...++.+.++.
T Consensus        55 ~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier-~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~  132 (546)
T COG4615          55 LGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER-LGSARLLAGLTSDVRNIS-FAFSRLPELVQAI  132 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-hcccchhhhhccccccee-ehHhhhHHHHHHH
Confidence            33334445566666777788899999999999999999999999986 489999999999999999 4455678899999


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcchHH--HHH
Q 000856          171 STFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESK--ALN  248 (1252)
Q Consensus       171 ~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~--~~~  248 (1252)
                      ..++++.+...++|+++.+++++.+.+.+....+...+.-+.....++..+++.+..+..+.|.|.++...--.+  ..+
T Consensus       133 il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~  212 (546)
T COG4615         133 ILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNN  212 (546)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhh
Confidence            999999999999999998888877777777777777777777778888888999999999999999987533221  222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          249 SYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAF  328 (1252)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  328 (1252)
                      .|....++.++...+............+.+......+++|....   -+.-+...+.+..+..++...|+.+....++.+
T Consensus       213 ~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~---~~w~st~~a~tivlvlLflr~pL~s~vgilP~l  289 (546)
T COG4615         213 LYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALS---LGWASTNVAATIVLVLLFLRTPLLSAVGILPTL  289 (546)
T ss_pred             hcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHhhHHHHHHhhhhHH
Confidence            22222222222111111110000111111111122222332221   123333344444455555566888888888999


Q ss_pred             HHHHHHHHHHHHHHccCCCCCCCCCCCCcCCCCcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHH
Q 000856          329 SKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKST  408 (1252)
Q Consensus       329 ~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKST  408 (1252)
                      .++.+|.++|.++-..++..+ .+ ...+.++ -..|+++||.|+|+..  ..-+..||++|++||++-|+|.|||||||
T Consensus       290 ~~AqvA~~kiakle~~~~~a~-~~-~~q~~p~-~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST  364 (546)
T COG4615         290 LTAQVAFNKIAKLELAPYKAD-FP-RPQAFPD-WKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKST  364 (546)
T ss_pred             HHHHHHHHHHHHhhcCCcccc-CC-CCCcCCc-ccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHH
Confidence            999999999999865433211 11 1111111 2359999999999743  24568899999999999999999999999


Q ss_pred             HHHHHhcccCCCCcEEEECCccccCCCHHHHhhhceEEccCCCCchhcHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHh
Q 000856          409 VVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPE-ATMAEVEAAASAANAHSFIT  487 (1252)
Q Consensus       409 ll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~-~~~~~~~~~~~~~~~~~~~~  487 (1252)
                      +++++.|+|.|++|+|++||+++..-+++++|+-++-|+-|-|||+.++      |.+. ++.+.+...+....+.....
T Consensus       365 ~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kts  438 (546)
T COG4615         365 LAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKTS  438 (546)
T ss_pred             HHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999999999999999999999999999998754      3333 45555555554443333222


Q ss_pred             hCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHh-c-CCCeEEEEccCccch
Q 000856          488 LLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL-M-VGRTTVVVAHRLSTI  565 (1252)
Q Consensus       488 ~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~-~-~~~tvi~itH~~~~~  565 (1252)
                      . .+|--     ....||-|||.|+|+--|++-+.||++|||=-+--||.=++.+.+.+..+ + .||||+.||||-.+.
T Consensus       439 l-~d~~f-----s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF  512 (546)
T COG4615         439 L-NDGRF-----SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF  512 (546)
T ss_pred             c-cCCcc-----cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh
Confidence            1 11111     12369999999999999999999999999999999999988888776544 3 499999999999999


Q ss_pred             hccCEEEEEeCCEEEEe
Q 000856          566 RNVDTVAVIQQGQVVET  582 (1252)
Q Consensus       566 ~~~d~i~~l~~G~i~~~  582 (1252)
                      ..|||++.+++|+++|.
T Consensus       513 ~~ADrll~~~~G~~~e~  529 (546)
T COG4615         513 IHADRLLEMRNGQLSEL  529 (546)
T ss_pred             hhHHHHHHHhcCceeec
Confidence            99999999999999875

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.9e-45  Score=408.02  Aligned_cols=195  Identities=29%  Similarity=0.403  Sum_probs=163.7

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcc
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1087 (1252)
                      ..+++.+|+|.|+..+. +.+.++++.+..-+++++||++|.||||+++++.+-..|..|-+.+.+           |.+
T Consensus       361 p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r  428 (582)
T KOG0062|consen  361 PNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR  428 (582)
T ss_pred             CeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence            36999999999964433 689999999999999999999999999999999999999999988875           788


Q ss_pred             cEEEccccccC-cccHH--HHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 000856         1088 IGLVQQEPALF-AASIF--DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 1164 (1252)
Q Consensus      1088 i~~VpQd~~lf-~gTIr--eNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl 1164 (1252)
                      |+|-.|.-.=| +-++-  +-+.-..|+.+++|+++.|...|+..-+...+      +    ..||||||-|+++|-...
T Consensus       429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s------i----~~LSGGQKsrvafA~~~~  498 (582)
T KOG0062|consen  429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS------I----ASLSGGQKSRVAFAACTW  498 (582)
T ss_pred             ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc------c----cccCCcchhHHHHHHHhc
Confidence            99999976533 22111  11111235669999999999999876554322      2    359999999999999999


Q ss_pred             cCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEE
Q 000856         1165 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVE 1226 (1252)
Q Consensus      1165 ~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive 1226 (1252)
                      .+|.+|||||||.+||.++-..+-++|+...  .-||+|||+.+.+.. |+.+++.++|+|..
T Consensus       499 ~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~  559 (582)
T KOG0062|consen  499 NNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTP  559 (582)
T ss_pred             CCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence            9999999999999999999999999998763  379999999999965 89999999999976

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.3e-44  Score=445.20  Aligned_cols=198  Identities=23%  Similarity=0.394  Sum_probs=168.4

Q ss_pred             CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--CCCceEEECCcccCCCCHHHHhcccEEEcccc-ccCcc
Q 000856         1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP-ALFAA 1100 (1252)
Q Consensus      1024 ~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~--p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~-~lf~g 1100 (1252)
                      .+..|+|||=-++||..+|++|+||||||||++.|.|-..  ..+|+|+|||.+..+   +..++.+|||.|++ |+=.-
T Consensus       803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~  879 (1391)
T KOG0065|consen  803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL  879 (1391)
T ss_pred             ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence            3469999999999999999999999999999999998754  247899999998765   78999999999977 56677


Q ss_pred             cHHHHhccCC-----CCCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC-CEE
Q 000856         1101 SIFDNIAYGK-----EGATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP-AIL 1170 (1252)
Q Consensus      1101 TIreNl~~~~-----~~~~dee----i~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p-~IL 1170 (1252)
                      ||||-|.+..     .+.+++|    +.++.+..++.++-+       ..||..|..||..||.||.||=-|+.|| .||
T Consensus       880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~d-------aiVG~~G~GLs~eQRKrLTIgVELvA~P~~il  952 (1391)
T KOG0065|consen  880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYAD-------ALVGLPGSGLSTEQRKRLTIGVELVANPSSIL  952 (1391)
T ss_pred             chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhh-------hhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence            9999997641     2334333    456666666665543       4589889999999999999999999999 999


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchh--hhccCEEEEEe-CCEEEEecChh
Q 000856         1171 LLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLST--IRGVDCIGVVQ-DGRIVEQGSHS 1231 (1252)
Q Consensus      1171 iLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~t--i~~~DrI~vl~-~G~Ive~G~~~ 1231 (1252)
                      +|||||||||+.+...|.+.++++. .|+||++.=|.++.  .+.+|+++.|. .|+.|-+|+..
T Consensus       953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen  953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred             EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence            9999999999999999999999986 69999999999984  36789999996 58999998864

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4.7e-46  Score=380.79  Aligned_cols=223  Identities=35%  Similarity=0.561  Sum_probs=190.6

Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHH---HH
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WL  439 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~  439 (1252)
                      ..|++++|+++|++   +.+++|+||+|++||+++|+||||||||||+|+|.|+++|++|+|.++|+|+.+.+.+   .+
T Consensus         7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i   83 (263)
T COG1127           7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI   83 (263)
T ss_pred             ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence            46999999999974   4599999999999999999999999999999999999999999999999999888754   57


Q ss_pred             hhhceEEccCCCCchh-cHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHhhCCCCcccc-ccCCCCCCChHHHHHHHH
Q 000856          440 RDQIGLVNQEPALFAT-TILENILYGKPEA---TMAEVEAAASAANAHSFITLLPNGYSTQ-VGERGVQLSGGQKQRIAI  514 (1252)
Q Consensus       440 ~~~i~~v~Q~~~l~~~-tv~~ni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~g~~LSgGqkqRv~l  514 (1252)
                      |+++|+++|.-.||+. ||+||+.|...+.   ....+.+..     ...++..  |+... ....+++||||+++|+||
T Consensus        84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv-----~~KL~~V--GL~~~~~~~~PsELSGGM~KRvaL  156 (263)
T COG1127          84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV-----LMKLELV--GLRGAAADLYPSELSGGMRKRVAL  156 (263)
T ss_pred             HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHH-----HHHHHhc--CCChhhhhhCchhhcchHHHHHHH
Confidence            8899999999999977 9999999964322   222222211     1122222  55554 445678999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          515 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       515 ARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |||++.+|+|+++|||||+|||.+...+.+.|+++++  |.|+++||||++++.. ||||+++.+|+|+.+|+++|+.+.
T Consensus       157 ARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~s  236 (263)
T COG1127         157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS  236 (263)
T ss_pred             HHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhC
Confidence            9999999999999999999999999999999998864  8999999999999987 699999999999999999999887


Q ss_pred             ccch
Q 000856          592 AGAY  595 (1252)
Q Consensus       592 ~~~~  595 (1252)
                      +..|
T Consensus       237 d~P~  240 (263)
T COG1127         237 DDPW  240 (263)
T ss_pred             CCHH
Confidence            6544

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=6.2e-46  Score=396.76  Aligned_cols=214  Identities=35%  Similarity=0.536  Sum_probs=188.2

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .++++|++|+|++   +++++|+||++++||+++|+||||||||||+|+|+|+++|.+|+|++||+++.+++.+++.+++
T Consensus         2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i   78 (258)
T COG1120           2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL   78 (258)
T ss_pred             eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence            3789999999974   4599999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEccCCCC-chhcHHHHHhcCCCCC-------CH---HHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHH
Q 000856          444 GLVNQEPAL-FATTILENILYGKPEA-------TM---AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI  512 (1252)
Q Consensus       444 ~~v~Q~~~l-~~~tv~~ni~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv  512 (1252)
                      |||||++.. +.-||+|-+.+|+...       +.   +.+.++++..           |+.....+...+||||||||+
T Consensus        79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~-----------~~~~la~r~~~~LSGGerQrv  147 (258)
T COG1120          79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELL-----------GLEHLADRPVDELSGGERQRV  147 (258)
T ss_pred             EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHh-----------CcHHHhcCcccccChhHHHHH
Confidence            999999754 4559999999985321       11   2344445544           444455666779999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchh-ccCEEEEEeCCEEEEecChHHHH
Q 000856          513 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELI  589 (1252)
Q Consensus       513 ~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~  589 (1252)
                      .|||||+++|+||+||||||+||...+-++++.++++.  +|+|+|++.||++... .||++++|++|+++.+|+++|++
T Consensus       148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl  227 (258)
T COG1120         148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL  227 (258)
T ss_pred             HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence            99999999999999999999999999999999999986  4899999999999874 59999999999999999999887


Q ss_pred             hc
Q 000856          590 AK  591 (1252)
Q Consensus       590 ~~  591 (1252)
                      ..
T Consensus       228 T~  229 (258)
T COG1120         228 TE  229 (258)
T ss_pred             CH
Confidence            65

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=1e-44  Score=399.85  Aligned_cols=233  Identities=58%  Similarity=0.924  Sum_probs=214.4

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++|++++|++. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (234)
T cd03251           1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG   79 (234)
T ss_pred             CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence            4789999999643 235999999999999999999999999999999999999999999999999998888888899999


Q ss_pred             EEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 000856         1090 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 1169 (1252)
Q Consensus      1090 ~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~I 1169 (1252)
                      |+||++.+|..|++||+.++....+.+++.+.++..++.++++.+|.|+++..+.....||||||||++|||||+++|++
T Consensus        80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  159 (234)
T cd03251          80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI  159 (234)
T ss_pred             EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999999987555566777778888899999999999999999888999999999999999999999999


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcCCCchhHHH
Q 000856         1170 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 1244 (1252)
Q Consensus      1170 LiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~l 1244 (1252)
                      +||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+. .+.|+.+
T Consensus       160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~  233 (234)
T cd03251         160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL  233 (234)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhhh
Confidence            9999999999999999999999998788999999999999988999999999999999999999876 6666654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=5e-45  Score=389.78  Aligned_cols=214  Identities=34%  Similarity=0.563  Sum_probs=192.7

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .++++|++|+|+   ++++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|++||.|+.+++.+++.+++
T Consensus         2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i   78 (258)
T COG1120           2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL   78 (258)
T ss_pred             eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence            378999999996   34699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcccc-ccCcccHHHHhccCCCC----------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 000856         1089 GLVQQEP-ALFAASIFDNIAYGKEG----------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 1157 (1252)
Q Consensus      1089 ~~VpQd~-~lf~gTIreNl~~~~~~----------~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1157 (1252)
                      +||||++ .-|.-|++|=+.+|+..          .+++.+.+|++.+++.++..+.       +    ..||||||||+
T Consensus        79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-------~----~~LSGGerQrv  147 (258)
T COG1120          79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-------V----DELSGGERQRV  147 (258)
T ss_pred             EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-------c----cccChhHHHHH
Confidence            9999996 56778999999887421          1233578899999999886542       3    35999999999


Q ss_pred             HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhhhh
Q 000856         1158 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1158 aLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti-~~~DrI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      .|||||.++|+||+||||||+||...+.++++.++++.  +++|+|+|.|+++.. +.||++++|++|+|+..|+|+|.+
T Consensus       148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl  227 (258)
T COG1120         148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL  227 (258)
T ss_pred             HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence            99999999999999999999999999999999999986  379999999999865 678999999999999999999988


Q ss_pred             cC
Q 000856         1235 SR 1236 (1252)
Q Consensus      1235 ~~ 1236 (1252)
                      ..
T Consensus       228 T~  229 (258)
T COG1120         228 TE  229 (258)
T ss_pred             CH
Confidence            53

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=1.7e-44  Score=398.70  Aligned_cols=235  Identities=53%  Similarity=0.839  Sum_probs=217.4

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      ++++|++++|++.  .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus         1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~   78 (236)
T cd03253           1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG   78 (236)
T ss_pred             CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence            4789999999632  35999999999999999999999999999999999999999999999999999888888999999


Q ss_pred             EEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 000856         1090 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 1169 (1252)
Q Consensus      1090 ~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~I 1169 (1252)
                      |+||++.+|++|+++|+.++....+++++.++++.+++.+++..+|.|+++.+......||||||||++|||||+++|++
T Consensus        79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l  158 (236)
T cd03253          79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI  158 (236)
T ss_pred             EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999999987555667778888899999999999999999999988999999999999999999999999


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcCCCchhHHHHHH
Q 000856         1170 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247 (1252)
Q Consensus      1170 LiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~l~~~ 1247 (1252)
                      |||||||++||+.+...+.+.|++..++.|+|++||+++.+..||++++|++|++++.|+++++..+ .+.|+.++..
T Consensus       159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~~  235 (236)
T cd03253         159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWKA  235 (236)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHhc
Confidence            9999999999999999999999987668899999999999988999999999999999999999875 6777777654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=1.6e-44  Score=399.18  Aligned_cols=236  Identities=62%  Similarity=1.002  Sum_probs=214.5

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      ++++|++++|++..+.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|++++
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   80 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG   80 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence            47899999996432346999999999999999999999999999999999999999999999999998888878888999


Q ss_pred             EEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 000856         1090 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 1169 (1252)
Q Consensus      1090 ~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~I 1169 (1252)
                      |+||++.+|+.|++||+.++......+++.+.++..++.+++..+|.|+++.......+||||||||++|||||+.+|++
T Consensus        81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  160 (238)
T cd03249          81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI  160 (238)
T ss_pred             EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999999986555566777788888899999999999999999888899999999999999999999999


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcCCCchhHHHHH
Q 000856         1170 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 1246 (1252)
Q Consensus      1170 LiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~l~~ 1246 (1252)
                      |||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+. .+.++.++.
T Consensus       161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~  236 (238)
T cd03249         161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLVK  236 (238)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHhh
Confidence            9999999999999999999999987778999999999999988999999999999999999999875 555655543

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=1.7e-44  Score=398.72  Aligned_cols=234  Identities=48%  Similarity=0.800  Sum_probs=211.7

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      |+++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (237)
T cd03252           1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG   79 (237)
T ss_pred             CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence            4789999999642 245899999999999999999999999999999999999999999999999988777777888899


Q ss_pred             EEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000856          445 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI  524 (1252)
Q Consensus       445 ~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~i  524 (1252)
                      |++|++++++.|++||+.++.+.....++...++..++.+.+..+|.|+++..++.+.+|||||||||+||||++.+|++
T Consensus        80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l  159 (237)
T cd03252          80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI  159 (237)
T ss_pred             EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence            99999999988999999986543445556666677788888999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhcccchHHHH
Q 000856          525 LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI  599 (1252)
Q Consensus       525 lllDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~  599 (1252)
                      +||||||++||+.+++.+.+.|+++.+|+|+|++||+++.+..||++++|++|++++.|+++++..+.+.|..++
T Consensus       160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~  234 (237)
T cd03252         160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY  234 (237)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHH
Confidence            999999999999999999999999877899999999999998799999999999999999999988877776644

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3e-45  Score=406.73  Aligned_cols=213  Identities=33%  Similarity=0.541  Sum_probs=188.4

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++++|++..   +++|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|.++++.++..  +.|
T Consensus         3 ~i~l~~v~K~yg~~~---~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i   77 (338)
T COG3839           3 ELELKNVRKSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI   77 (338)
T ss_pred             EEEEeeeEEEcCCce---eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence            489999999997431   899999999999999999999999999999999999999999999999999988875  689


Q ss_pred             eEEccCCCCchh-cHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000856          444 GLVNQEPALFAT-TILENILYGKPEAT------MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR  516 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-tv~~ni~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lAR  516 (1252)
                      |+|||+..||+. ||+|||.|+.....      +.++.++++..           +++..+.+++.+|||||||||||||
T Consensus        78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L-----------~l~~lL~r~P~~LSGGQrQRVAlaR  146 (338)
T COG3839          78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLL-----------GLEHLLNRKPLQLSGGQRQRVALAR  146 (338)
T ss_pred             EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHc-----------CChhHHhcCcccCChhhHHHHHHHH
Confidence            999999999987 99999999865322      23344444443           5555666677799999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhcc
Q 000856          517 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       517 al~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      ||+++|+++|||||+|+||++.+..+...|+++.+  +.|+|+||||..++.. +|||.||++|+|.+.|++.|+.++.
T Consensus       147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P  225 (338)
T COG3839         147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP  225 (338)
T ss_pred             HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence            99999999999999999999999999999988753  7999999999999876 8999999999999999999998764

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=4e-45  Score=355.21  Aligned_cols=210  Identities=35%  Similarity=0.567  Sum_probs=187.2

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      +.+++|.|+|+..+     =.++++|++||++||+||||||||||+++|+||..|.+|+|.+||+|....++.  ++-++
T Consensus         2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS   74 (231)
T COG3840           2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS   74 (231)
T ss_pred             ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence            56789999997533     368999999999999999999999999999999999999999999999876665  35699


Q ss_pred             EEccCCCCchh-cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000856          445 LVNQEPALFAT-TILENILYGKPE------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA  517 (1252)
Q Consensus       445 ~v~Q~~~l~~~-tv~~ni~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARa  517 (1252)
                      +++||..||.. ||.+|+.+|...      ...++++.++...++..+.+++|.           +||||||||+||||+
T Consensus        75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc  143 (231)
T COG3840          75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC  143 (231)
T ss_pred             hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence            99999999976 999999998531      234667888888888888888876           899999999999999


Q ss_pred             hccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhcc
Q 000856          518 MLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       518 l~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      |+++-+|++||||+|+|||.-+.++...+.++.  ++.|++||||+++.+.. +|+++++++|+|.++|+.+++....
T Consensus       144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~  221 (231)
T COG3840         144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK  221 (231)
T ss_pred             HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence            999999999999999999999999999998885  47899999999999977 7999999999999999999887654

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=1.9e-44  Score=394.17  Aligned_cols=221  Identities=35%  Similarity=0.593  Sum_probs=206.7

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcc
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1087 (1252)
                      |.++++|++++|+.. +.++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|++
T Consensus         1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   79 (221)
T cd03244           1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR   79 (221)
T ss_pred             CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence            468999999999632 2469999999999999999999999999999999999999999999999999998888889999


Q ss_pred             cEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 000856         1088 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 1167 (1252)
Q Consensus      1088 i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p 1167 (1252)
                      ++|+||++.+|++|++||+.+.. ..+.+++.++++..++.+++..+|.|+++..++.+.+||||||||++|||||+++|
T Consensus        80 i~~~~q~~~l~~~tv~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p  158 (221)
T cd03244          80 ISIIPQDPVLFSGTIRSNLDPFG-EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS  158 (221)
T ss_pred             EEEECCCCccccchHHHHhCcCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999998754 35678889999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 000856         1168 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 1230 (1252)
Q Consensus      1168 ~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~ 1230 (1252)
                      ++|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus       159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~  221 (221)
T cd03244         159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP  221 (221)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence            999999999999999999999999988778899999999999988999999999999998863

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.8e-45  Score=374.07  Aligned_cols=217  Identities=34%  Similarity=0.552  Sum_probs=188.4

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCC---HHHHh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ---LRWLR  440 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~~  440 (1252)
                      .|+++|+++.||+  ++.+|+||||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|.++...+   ...+|
T Consensus         3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r   80 (258)
T COG3638           3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR   80 (258)
T ss_pred             eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence            4899999999984  456999999999999999999999999999999999999999999999999988776   45677


Q ss_pred             hhceEEccCCCCchh-cHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHH
Q 000856          441 DQIGLVNQEPALFAT-TILENILYGKPEA-----------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ  508 (1252)
Q Consensus       441 ~~i~~v~Q~~~l~~~-tv~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGq  508 (1252)
                      ++|||++|++.|.+. ||.+|++.|....           +.++..      .+.+.++.+  |+......+..+|||||
T Consensus        81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~------~Al~aLerv--gi~~~A~qra~~LSGGQ  152 (258)
T COG3638          81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKA------QALDALERV--GILDKAYQRASTLSGGQ  152 (258)
T ss_pred             HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHH------HHHHHHHHc--CcHHHHHHHhccCCcch
Confidence            899999999999876 9999999875422           122222      222334444  66666667788999999


Q ss_pred             HHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecCh
Q 000856          509 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTH  585 (1252)
Q Consensus       509 kqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~  585 (1252)
                      +|||+|||||+++|+|+|-|||+|+|||.+.+.+++.|+++.  .|.|+|+.-|+++.+++ ||||+-|++|+|+.+|+.
T Consensus       153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~  232 (258)
T COG3638         153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA  232 (258)
T ss_pred             hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence            999999999999999999999999999999999999999885  48999999999999966 899999999999999999


Q ss_pred             HHHHh
Q 000856          586 EELIA  590 (1252)
Q Consensus       586 ~~l~~  590 (1252)
                      +|+-+
T Consensus       233 ~el~~  237 (258)
T COG3638         233 SELTD  237 (258)
T ss_pred             hhhhH
Confidence            88643

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=9.8e-45  Score=414.61  Aligned_cols=225  Identities=34%  Similarity=0.599  Sum_probs=194.3

Q ss_pred             EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHH---Hh
Q 000856         1010 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LR 1085 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~---lR 1085 (1252)
                      |+++||+++|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++..+   +|
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r   81 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR   81 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            78999999996321 246999999999999999999999999999999999999999999999999999887654   58


Q ss_pred             cccEEEccccccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 000856         1086 LKIGLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 1158 (1252)
Q Consensus      1086 ~~i~~VpQd~~lf~-gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1158 (1252)
                      ++|+||||++.+|. .|++||+.++..  ..+    ++.+.++++.+++.++....|           ..||||||||++
T Consensus        82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV~  150 (343)
T TIGR02314        82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRVA  150 (343)
T ss_pred             cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence            89999999999985 799999986421  222    345677888888877655443           469999999999


Q ss_pred             HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhc
Q 000856         1159 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1159 LARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~ 1235 (1252)
                      |||||+.+|++||||||||+||+.+...+++.|++..+  +.|+|+|||+++.+.. ||+|++|++|+|++.|++++++.
T Consensus       151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~  230 (343)
T TIGR02314       151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS  230 (343)
T ss_pred             HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence            99999999999999999999999999999999999753  7899999999999965 89999999999999999999987


Q ss_pred             CCCchh-HHHH
Q 000856         1236 RPDGAY-SRLL 1245 (1252)
Q Consensus      1236 ~~~g~y-~~l~ 1245 (1252)
                      .+...+ ++++
T Consensus       231 ~p~~~~~~~~~  241 (343)
T TIGR02314       231 HPKTPLAQKFI  241 (343)
T ss_pred             CCCcHHHHHHH
Confidence            655444 4444

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=7e-45  Score=381.00  Aligned_cols=209  Identities=36%  Similarity=0.536  Sum_probs=173.1

Q ss_pred             EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHH---HH-
Q 000856          365 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WL-  439 (1252)
Q Consensus       365 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~-  439 (1252)
                      ++++|+++.|.... ...+|+++||+|++||+++|+|||||||||||++|.|+..|++|+|.++|+|+...+.+   .+ 
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R   81 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR   81 (226)
T ss_pred             cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence            57899999996432 25699999999999999999999999999999999999999999999999999887643   34 


Q ss_pred             hhhceEEccCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHhhCCCCcccccc-CCCCCCChHHHHHHHHH
Q 000856          440 RDQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVG-ERGVQLSGGQKQRIAIA  515 (1252)
Q Consensus       440 ~~~i~~v~Q~~~l~~~-tv~~ni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~g~~LSgGqkqRv~lA  515 (1252)
                      |++||||+|+..|++. |++||+.++..  .....+..+     ...+.++.+  |+..... ..+.+||||||||||||
T Consensus        82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~-----~~~~l~~~l--gl~~~~~~~~p~eLSGGqqQRVAIA  154 (226)
T COG1136          82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR-----AAEELLEVL--GLEDRLLKKKPSELSGGQQQRVAIA  154 (226)
T ss_pred             HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHH-----HHHHHHHhc--CChhhhccCCchhcCHHHHHHHHHH
Confidence            4579999999999876 99999986321  111111111     111222332  5554444 66889999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhccCEEEEEeCCEEE
Q 000856          516 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVV  580 (1252)
Q Consensus       516 Ral~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~  580 (1252)
                      |||+.+|++++.||||++||.++.+.+++.++++.  .|+|+|+||||......|||++.|+||++.
T Consensus       155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~  221 (226)
T COG1136         155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE  221 (226)
T ss_pred             HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence            99999999999999999999999999999999984  389999999999999999999999999954

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.9e-45  Score=380.21  Aligned_cols=202  Identities=36%  Similarity=0.520  Sum_probs=170.6

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .+++++++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+++.-     ...+
T Consensus         3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~   74 (248)
T COG1116           3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI   74 (248)
T ss_pred             eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence            4789999999975   5699999999999999999999999999999999999999999999999887432     3479


Q ss_pred             eEEccCCCCch-hcHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000856          444 GLVNQEPALFA-TTILENILYGKPEAT--MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       444 ~~v~Q~~~l~~-~tv~~ni~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~  520 (1252)
                      +||+|++.||+ -||+||+.++.....  .++-.+     .+.+.++..  |+...-+..+.+|||||||||||||||+.
T Consensus        75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~-----~a~~~L~~V--gL~~~~~~~P~qLSGGMrQRVaiARAL~~  147 (248)
T COG1116          75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE-----RAKELLELV--GLAGFEDKYPHQLSGGMRQRVAIARALAT  147 (248)
T ss_pred             EEEeccCcccchhhHHhhheehhhccccchHhHHH-----HHHHHHHHc--CCcchhhcCccccChHHHHHHHHHHHHhc
Confidence            99999999996 499999999875432  111111     222334433  66656666777999999999999999999


Q ss_pred             CCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeC--CEEE
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQ--GQVV  580 (1252)
Q Consensus       521 ~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~--G~i~  580 (1252)
                      +|++|+||||++|||+.|+..+++.+.++.  .++|+++|||++++.-. +|||++|.+  |+|.
T Consensus       148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~  212 (248)
T COG1116         148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG  212 (248)
T ss_pred             CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence            999999999999999999999999998885  37999999999999866 899999998  4553

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=3.8e-45  Score=359.10  Aligned_cols=206  Identities=32%  Similarity=0.490  Sum_probs=179.9

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCH---HHHhh
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL---RWLRD  441 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~  441 (1252)
                      |+|+||+++|++.  .++|+|+||+|++||++-|+||||||||||+|+|.+...|+.|+|.++|.|+..+..   ..+|+
T Consensus         2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR   79 (223)
T COG2884           2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR   79 (223)
T ss_pred             eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence            7899999999864  569999999999999999999999999999999999999999999999999987654   46899


Q ss_pred             hceEEccCCCCchh-cHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 000856          442 QIGLVNQEPALFAT-TILENILYGKPEAT------MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI  514 (1252)
Q Consensus       442 ~i~~v~Q~~~l~~~-tv~~ni~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~l  514 (1252)
                      +||+|+||..|... ||+||++|...-..      .+++..+++.+++.+....+           +.+|||||||||+|
T Consensus        80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~l-----------P~~LSGGEQQRvaI  148 (223)
T COG2884          80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARAL-----------PSQLSGGEQQRVAI  148 (223)
T ss_pred             eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcC-----------ccccCchHHHHHHH
Confidence            99999999988765 99999999754222      23455555555555544444           45999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhcc-CEEEEEeCCEEEEec
Q 000856          515 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETG  583 (1252)
Q Consensus       515 ARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~~-d~i~~l~~G~i~~~g  583 (1252)
                      |||+..+|++||-||||.+|||.....+++.+.++. .|.||++.||+.+.+..+ -|++.+++|+++...
T Consensus       149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~  219 (223)
T COG2884         149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE  219 (223)
T ss_pred             HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence            999999999999999999999999999999999985 599999999999999886 799999999998654

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=4.7e-45  Score=358.41  Aligned_cols=208  Identities=34%  Similarity=0.543  Sum_probs=188.1

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHH---HHhc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLRL 1086 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~---~lR~ 1086 (1252)
                      |+|+||+.+|+..  .++|+||||+|++||.+-++||||||||||+|+|++...|++|+|.++|.|+.++.-.   -||+
T Consensus         2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR   79 (223)
T COG2884           2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR   79 (223)
T ss_pred             eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence            7999999999854  4699999999999999999999999999999999999999999999999999887754   4899


Q ss_pred             ccEEEccccccC-cccHHHHhccCCC------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 000856         1087 KIGLVQQEPALF-AASIFDNIAYGKE------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 1159 (1252)
Q Consensus      1087 ~i~~VpQd~~lf-~gTIreNl~~~~~------~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 1159 (1252)
                      +||+|+||..|+ +-|+.||+++.-.      ..-.+.+.++|+.+||.+....+|           ..|||||+||+||
T Consensus        80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI  148 (223)
T COG2884          80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI  148 (223)
T ss_pred             eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence            999999999876 5699999997632      122466788999999999999998           4699999999999


Q ss_pred             HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhcc-CEEEEEeCCEEEEecCh
Q 000856         1160 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSH 1230 (1252)
Q Consensus      1160 ARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~-DrI~vl~~G~Ive~G~~ 1230 (1252)
                      |||++.+|++||-||||-+||+++...|++.+.+.- .|.||++.||+.+.+..+ -|++.+++|+++....+
T Consensus       149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~  221 (223)
T COG2884         149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR  221 (223)
T ss_pred             HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence            999999999999999999999999999999999875 599999999999999887 78999999999976654

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-44  Score=373.27  Aligned_cols=226  Identities=31%  Similarity=0.503  Sum_probs=189.8

Q ss_pred             cEEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCC-HHHHhc
Q 000856         1009 EIELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-LKSLRL 1086 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~-~~~lR~ 1086 (1252)
                      .++++|+++.|+.... .++|+||||+|.+||++||||+||||||||+++|.|+.+|++|+|.+||.+..... .+..++
T Consensus         3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~   82 (252)
T COG1124           3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR   82 (252)
T ss_pred             eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence            4899999999974310 15999999999999999999999999999999999999999999999998775533 346788


Q ss_pred             ccEEEcccccc-C--cccHHHHhc----cCCCCCCHHHHHHHHHHcCchhhH-hhCCCcCCCccCCCCCCCChhHHHHHH
Q 000856         1087 KIGLVQQEPAL-F--AASIFDNIA----YGKEGATEAEVVEAARAANVHGFV-SALPNAYKTPVGERGVQLSGGQKQRIA 1158 (1252)
Q Consensus      1087 ~i~~VpQd~~l-f--~gTIreNl~----~~~~~~~deei~~al~~~~l~~~i-~~lp~gldt~vge~G~~LSgGQrQrla 1158 (1252)
                      .+.+|+|||.- +  ..||++-|.    ...-...+.+++++++.+|+.+-+ ...|           ..||||||||+|
T Consensus        83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia  151 (252)
T COG1124          83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA  151 (252)
T ss_pred             ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence            99999999952 2  245555553    322234566799999999997543 3444           469999999999


Q ss_pred             HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhc
Q 000856         1159 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1159 LARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~ 1235 (1252)
                      |||||.-+|++||||||||+||...+++|++.+.+..+  +-|.|+|||+++.+.. ||||+||++|+++|.++-.++.+
T Consensus       152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~  231 (252)
T COG1124         152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS  231 (252)
T ss_pred             HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence            99999999999999999999999999999999999875  4599999999999965 89999999999999999999998


Q ss_pred             CCCchhHHHH
Q 000856         1236 RPDGAYSRLL 1245 (1252)
Q Consensus      1236 ~~~g~y~~l~ 1245 (1252)
                      .+...|.+.+
T Consensus       232 ~~~h~ytr~L  241 (252)
T COG1124         232 HPSHPYTREL  241 (252)
T ss_pred             CCccHHHHHH
Confidence            7666776543

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=2.9e-44  Score=394.93  Aligned_cols=227  Identities=51%  Similarity=0.875  Sum_probs=211.4

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcc
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1087 (1252)
                      +.|+++|++++|++  ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|++
T Consensus         1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   78 (229)
T cd03254           1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM   78 (229)
T ss_pred             CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence            36899999999963  2359999999999999999999999999999999999999999999999999988888889999


Q ss_pred             cEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 000856         1088 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 1167 (1252)
Q Consensus      1088 i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p 1167 (1252)
                      ++|+||++.+|.+|++||+.++.+...++++.++++..++.++++.+|.|+++.++.....||||||||++|||||+++|
T Consensus        79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p  158 (229)
T cd03254          79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP  158 (229)
T ss_pred             EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999875555667888888999999999999999999998888999999999999999999999


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1168 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1168 ~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      ++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|++++++++
T Consensus       159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~  227 (229)
T cd03254         159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK  227 (229)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence            999999999999999999999999988778999999999999988999999999999999999888765

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-44  Score=412.39  Aligned_cols=223  Identities=29%  Similarity=0.471  Sum_probs=193.0

Q ss_pred             CcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccccC--
Q 000856          361 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--  433 (1252)
Q Consensus       361 ~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--  433 (1252)
                      ..+.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.+||+++..  
T Consensus        77 ~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~  155 (329)
T PRK14257         77 HANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK  155 (329)
T ss_pred             cCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence            34679999999999642 3468999999999999999999999999999999999996     579999999999974  


Q ss_pred             CCHHHHhhhceEEccCCCCchhcHHHHHhcCCCC--CCHHH-----HHHHHHHhcHHHHHhhCCCCccccccCCCCCCCh
Q 000856          434 LQLRWLRDQIGLVNQEPALFATTILENILYGKPE--ATMAE-----VEAAASAANAHSFITLLPNGYSTQVGERGVQLSG  506 (1252)
Q Consensus       434 ~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSg  506 (1252)
                      .+...+|+.++||||+|++|++|++||+.|+...  .++++     +..+++.++       ++.++++.+++++.+|||
T Consensus       156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~LSg  228 (329)
T PRK14257        156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNALSG  228 (329)
T ss_pred             cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccCCH
Confidence            3456778899999999999999999999986421  22222     222333333       344566788999999999


Q ss_pred             HHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecCh
Q 000856          507 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTH  585 (1252)
Q Consensus       507 GqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~  585 (1252)
                      |||||++||||++++|+||||||||++||+++.+.+.+.|+++.+++|+|+|||+++++.. ||||++|++|++++.|++
T Consensus       229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~  308 (329)
T PRK14257        229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGET  308 (329)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999999998888999999999999987 899999999999999999


Q ss_pred             HHHHhc
Q 000856          586 EELIAK  591 (1252)
Q Consensus       586 ~~l~~~  591 (1252)
                      +++...
T Consensus       309 ~~l~~~  314 (329)
T PRK14257        309 KTIFIH  314 (329)
T ss_pred             HHHhcC
Confidence            998764

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.2e-44  Score=368.56  Aligned_cols=224  Identities=32%  Similarity=0.589  Sum_probs=195.4

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHH---HHh
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLR 1085 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~---~lR 1085 (1252)
                      .|++++|+++|.+   +.|++||||+|++||.+||+|+||||||||++++.|+..|++|+|.++|.|+.+++.+   .+|
T Consensus         8 ~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir   84 (263)
T COG1127           8 LIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR   84 (263)
T ss_pred             eEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence            5999999999963   4699999999999999999999999999999999999999999999999999988854   579


Q ss_pred             cccEEEccccccCcc-cHHHHhccCCC---CCCHHHH----HHHHHHcCchhh-HhhCCCcCCCccCCCCCCCChhHHHH
Q 000856         1086 LKIGLVQQEPALFAA-SIFDNIAYGKE---GATEAEV----VEAARAANVHGF-VSALPNAYKTPVGERGVQLSGGQKQR 1156 (1252)
Q Consensus      1086 ~~i~~VpQd~~lf~g-TIreNl~~~~~---~~~deei----~~al~~~~l~~~-i~~lp~gldt~vge~G~~LSgGQrQr 1156 (1252)
                      +++|+++|+..||+. ||+||+.+.-.   ..+++++    ...++.+||..- .+..|           ..||||.+.|
T Consensus        85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~KR  153 (263)
T COG1127          85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRKR  153 (263)
T ss_pred             hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHHH
Confidence            999999999999965 99999998533   2344444    345566777665 33344           5799999999


Q ss_pred             HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000856         1157 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1157 laLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      +||||||.-+|+||++|||||+|||.+...+-+.|+++.+  +.|+++|||+++++.. ||||+++.||+|+-.|+++|+
T Consensus       154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el  233 (263)
T COG1127         154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL  233 (263)
T ss_pred             HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999988764  7899999999999865 699999999999999999999


Q ss_pred             hcCCCchhHHHHH
Q 000856         1234 VSRPDGAYSRLLQ 1246 (1252)
Q Consensus      1234 l~~~~g~y~~l~~ 1246 (1252)
                      .+..+...++.++
T Consensus       234 ~~sd~P~v~qf~~  246 (263)
T COG1127         234 LASDDPWVRQFFN  246 (263)
T ss_pred             HhCCCHHHHHHhc
Confidence            9976666666654

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=4.6e-45  Score=407.39  Aligned_cols=214  Identities=37%  Similarity=0.556  Sum_probs=188.1

Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhh
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ  442 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~  442 (1252)
                      ..++++|++++|+   +..+++|+||+|++||+++++|||||||||+|++|+||..|++|+|.++|+++...++.  ++.
T Consensus         4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~   78 (352)
T COG3842           4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP   78 (352)
T ss_pred             ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence            3589999999997   34699999999999999999999999999999999999999999999999999998876  568


Q ss_pred             ceEEccCCCCchh-cHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPE---ATM----AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI  514 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-tv~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~l  514 (1252)
                      |++|||+..||+. ||+|||.||...   ...    +++.++++..           |+...-.+++.+|||||||||||
T Consensus        79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV-----------~L~~~~~R~p~qLSGGQqQRVAL  147 (352)
T COG3842          79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELV-----------GLEGFADRKPHQLSGGQQQRVAL  147 (352)
T ss_pred             cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHc-----------CchhhhhhChhhhChHHHHHHHH
Confidence            9999999999976 999999999751   111    2344444444           44445566677999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          515 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       515 ARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      ||||..+|++||||||+|+||.+-+..++..++++.  .|.|.|+||||.++... +|||+||++|+|...|+++|++..
T Consensus       148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~  227 (352)
T COG3842         148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER  227 (352)
T ss_pred             HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence            999999999999999999999999999999998874  38999999999999866 799999999999999999999876


Q ss_pred             c
Q 000856          592 A  592 (1252)
Q Consensus       592 ~  592 (1252)
                      .
T Consensus       228 P  228 (352)
T COG3842         228 P  228 (352)
T ss_pred             c
Confidence            4

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.8e-44  Score=398.99  Aligned_cols=219  Identities=37%  Similarity=0.610  Sum_probs=198.8

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .|+++||+.+|.+.   .+++|+||+|+.||.++|+||||||||||+++|+||.+|++|+|.|||.|++++++++  ++|
T Consensus         3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i   77 (338)
T COG3839           3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI   77 (338)
T ss_pred             EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence            58999999999632   2899999999999999999999999999999999999999999999999999999877  789


Q ss_pred             EEEccccccCcc-cHHHHhccCCCC------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 000856         1089 GLVQQEPALFAA-SIFDNIAYGKEG------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161 (1252)
Q Consensus      1089 ~~VpQd~~lf~g-TIreNl~~~~~~------~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 1161 (1252)
                      ++|+|+..||+- ||+|||.|+...      -.++++.++++..++..+++..|           ..||||||||+||||
T Consensus        78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR  146 (338)
T COG3839          78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR  146 (338)
T ss_pred             EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence            999999999965 999999987432      23677889999999999988877           469999999999999


Q ss_pred             HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcCCC
Q 000856         1162 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 1238 (1252)
Q Consensus      1162 ALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~~~ 1238 (1252)
                      ||+++|++++||||.|+||+.....+...|+++.+  +.|+|.|||+...+. -+|||.||.+|+|.+.|+|.|+..+|.
T Consensus       147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~  226 (338)
T COG3839         147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA  226 (338)
T ss_pred             HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence            99999999999999999999999999999988653  689999999998875 579999999999999999999999887


Q ss_pred             chhHH
Q 000856         1239 GAYSR 1243 (1252)
Q Consensus      1239 g~y~~ 1243 (1252)
                      ..|-.
T Consensus       227 n~fVA  231 (338)
T COG3839         227 NLFVA  231 (338)
T ss_pred             chhhh
Confidence            76643

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.6e-44  Score=386.03  Aligned_cols=215  Identities=35%  Similarity=0.593  Sum_probs=190.7

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCcccc-CCCHHHHhhh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK-TLQLRWLRDQ  442 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~-~~~~~~~~~~  442 (1252)
                      .++++|++|+|++.  .++|+|+||+|++||.++|+|+||||||||+++++|+++|++|+|.++|.++. ..+...+|++
T Consensus         3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~   80 (235)
T COG1122           3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK   80 (235)
T ss_pred             eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence            47899999999864  56999999999999999999999999999999999999999999999999988 4778889999


Q ss_pred             ceEEccCC--CCchhcHHHHHhcCCCCCC--HHH----HHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 000856          443 IGLVNQEP--ALFATTILENILYGKPEAT--MAE----VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI  514 (1252)
Q Consensus       443 i~~v~Q~~--~l~~~tv~~ni~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~l  514 (1252)
                      +|||+|+|  ++|..||.|.+.||..+..  .++    +..+++.+           |+.....+...+|||||||||||
T Consensus        81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~v-----------gl~~~~~r~p~~LSGGqkqRvaI  149 (235)
T COG1122          81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELV-----------GLEELLDRPPFNLSGGQKQRVAI  149 (235)
T ss_pred             eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHc-----------CchhhccCCccccCCcceeeHHh
Confidence            99999999  7899999999999976432  222    33333333           55555667778999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          515 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       515 ARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |.+|+.+|++||||||||+||+..++.+.+.++++.+  |+|+|++|||++.+.. |||+++|++|+++.+|+++++.+.
T Consensus       150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~  229 (235)
T COG1122         150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND  229 (235)
T ss_pred             hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence            9999999999999999999999999999999999964  5899999999999977 999999999999999999888765

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.3e-44  Score=384.29  Aligned_cols=215  Identities=39%  Similarity=0.660  Sum_probs=195.5

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccC-CCCHHHHhcc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR-RLNLKSLRLK 1087 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~-~~~~~~lR~~ 1087 (1252)
                      -++++|++|+|+++  .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.++. +.+...+|++
T Consensus         3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~   80 (235)
T COG1122           3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK   80 (235)
T ss_pred             eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence            48999999999754  47999999999999999999999999999999999999999999999999998 4889999999


Q ss_pred             cEEEcccc--ccCcccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 000856         1088 IGLVQQEP--ALFAASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 1159 (1252)
Q Consensus      1088 i~~VpQd~--~lf~gTIreNl~~~~~--~~~de----ei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 1159 (1252)
                      +|+|.|+|  ++|..||.+.++||..  ..+.+    .+.++++.+++.++.+..|           .+||||||||+||
T Consensus        81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI  149 (235)
T COG1122          81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI  149 (235)
T ss_pred             eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence            99999999  8999999999999853  23443    4677888888887754433           5799999999999


Q ss_pred             HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcC
Q 000856         1160 ARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1160 ARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      |.+|..+|++||||||||+||+...+.+.+.++++..  ++|+|+|||+++.+.. |||++||++|+++.+|+|++++++
T Consensus       150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~  229 (235)
T COG1122         150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND  229 (235)
T ss_pred             hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence            9999999999999999999999999999999999864  5799999999999977 899999999999999999999876

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=100.00  E-value=1.6e-40  Score=389.96  Aligned_cols=473  Identities=16%  Similarity=0.155  Sum_probs=363.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCC----hHHHHHHHhhcHHHHHHHHH
Q 000856          730 FVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHN----SSLVAARLATDAADVKSAIA  805 (1252)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~----~g~l~~r~~~D~~~i~~~~~  805 (1252)
                      ...+|..++++.......+.|+...+..+...-+.+.++++-+...-.|+.. ..+    .-..-.|+..|+..+-+.-.
T Consensus        88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~-~~~~~~~~dNpDQRi~eDi~~~t~~t~  166 (604)
T COG4178          88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA-QAGGIGLIDNPDQRIQEDIRNFTETTL  166 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH-hcccccCCCChHHhHHHHHHHHHhhHH
Confidence            3455666666666667778888888888888888888888888777444322 221    01233788999888777666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000856          806 DRISVILQNMTSLLTSFIVAFI---------------VEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSM  870 (1252)
Q Consensus       806 ~~~~~~~~~~~~~~~~~i~~~~---------------~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  870 (1252)
                      .....++.++++++...++++-               +...+.+++++.++..-++.++..+.+.+..-+..+..+.+..
T Consensus       167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~  246 (604)
T COG4178         167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY  246 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence            6666667777766666665552               2223334444444555555667777888888888888888888


Q ss_pred             HHHHHhccHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 000856          871 IAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVI  950 (1252)
Q Consensus       871 ~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~  950 (1252)
                      .+.-.-++...|..++.|+...++..+..+.......+.......+..+......+...+-+.++......|.+++|.++
T Consensus       247 ~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lm  326 (604)
T COG4178         247 SLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLM  326 (604)
T ss_pred             HHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHH
Confidence            88888899999999999998888887777766665555554444444444444444445555666667789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CCCCCCCCC--CCC---CCccccEEEEeEEEECCCCC
Q 000856          951 KVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRST--RIDPDDPDA--EPV---ETIRGEIELRHVDFAYPSRP 1023 (1252)
Q Consensus       951 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ri~~~~~~~~--~~~~~~~~~--~~~---~~~~g~I~~~nvsf~Y~~~~ 1023 (1252)
                      ....++......+..++...+.+..-.....|+.++.+...  +.++..+..  ...   ...+..|+|+|++..-|+. 
T Consensus       327 qa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-  405 (604)
T COG4178         327 QAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-  405 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC-
Confidence            99999999999999999999999999999999987764322  111111111  000   1114679999999998754 


Q ss_pred             CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEEEccccccCcccHH
Q 000856         1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF 1103 (1252)
Q Consensus      1024 ~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIr 1103 (1252)
                       .+.++++||+|++||.+-|.|+||||||||+++|.|+++--+|+|.+-.           -..+-|+||.|.+-.||+|
T Consensus       406 -~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLr  473 (604)
T COG4178         406 -QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLR  473 (604)
T ss_pred             -CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHH
Confidence             3689999999999999999999999999999999999999999987741           1458899999999999999


Q ss_pred             HHhccCCCC--CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCH
Q 000856         1104 DNIAYGKEG--ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181 (1252)
Q Consensus      1104 eNl~~~~~~--~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~ 1181 (1252)
                      |=|+|+...  .+|+++.++|.+++|.++++++.+ .    ..-..-||+|||||||+||.|+++|++++|||+||+||+
T Consensus       474 e~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-~----~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe  548 (604)
T COG4178         474 EALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-E----DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE  548 (604)
T ss_pred             HHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-c----CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence            999987654  899999999999999999998743 2    224567999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeC
Q 000856         1182 ESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 1221 (1252)
Q Consensus      1182 ~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~ 1221 (1252)
                      ++|..+++.+++..+++|+|.|+||.....-.++.+-+++
T Consensus       549 ~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~  588 (604)
T COG4178         549 ETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD  588 (604)
T ss_pred             HHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence            9999999999999999999999999888777777666653

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=1.6e-43  Score=386.43  Aligned_cols=220  Identities=45%  Similarity=0.743  Sum_probs=202.3

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcc
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1087 (1252)
                      +.++++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.
T Consensus         1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   79 (220)
T cd03245           1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN   79 (220)
T ss_pred             CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence            358999999999632 2469999999999999999999999999999999999999999999999999988787778889


Q ss_pred             cEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 000856         1088 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 1167 (1252)
Q Consensus      1088 i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p 1167 (1252)
                      ++|+||++.+|..|++||+.++....+++++.++++..++.+.+..+|.|++|.+.+....||||||||++||||++.+|
T Consensus        80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p  159 (220)
T cd03245          80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP  159 (220)
T ss_pred             EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence            99999999999899999998765445566788889999999999999999999998888899999999999999999999


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEec
Q 000856         1168 AILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1168 ~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G 1228 (1252)
                      ++|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|
T Consensus       160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~  220 (220)
T cd03245         160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG  220 (220)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence            9999999999999999999999999987668999999999988889999999999998764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.4e-41  Score=360.03  Aligned_cols=473  Identities=20%  Similarity=0.284  Sum_probs=350.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCChHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 000856          733 IYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVIL  812 (1252)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~g~l~~r~~~D~~~i~~~~~~~~~~~~  812 (1252)
                      .+.++.++..+...+........+.++..++|.++.++++..|+.-++  +.+++.++.++++|+..+. +-...++.+.
T Consensus        53 ~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerie--r~~~~rlla~L~~Dvr~IS-f~~s~lp~~~  129 (546)
T COG4615          53 EFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIE--RLGSARLLAGLTSDVRNIS-FAFSRLPELV  129 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH--Hhcccchhhhhccccccee-ehHhhhHHHH
Confidence            344444445555566677778899999999999999999999999996  4789999999999999998 5556677888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccHHHHHHhccHHHHH
Q 000856          813 QNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKIL  892 (1252)
Q Consensus       813 ~~~~~~~~~~i~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~  892 (1252)
                      ++....+++...+.+.++++.+++.+.+.+.++..++...+.-+..+..++...+...+.+-.++|-+.++...-..+..
T Consensus       130 qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~  209 (546)
T COG4615         130 QAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYV  209 (546)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHH
Confidence            99999999999999999999888888887777777776666666566667777888888888999999988765433222


Q ss_pred             --HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          893 --SLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLA  970 (1252)
Q Consensus       893 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  970 (1252)
                        +.+...-+...+...+............+.+.+....+.+|+.......   +......+.+.+.+.-.|+...+...
T Consensus       210 h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~---st~~a~tivlvlLflr~pL~s~vgil  286 (546)
T COG4615         210 HNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWA---STNVAATIVLVLLFLRTPLLSAVGIL  286 (546)
T ss_pred             HhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---hhhHHHHHHHHHHHHhhHHHHHHhhh
Confidence              2222211111111111111111111222333333333344444333221   12233334455566678999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCC
Q 000856          971 PEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSG 1050 (1252)
Q Consensus       971 ~~~~~~~~s~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSG 1050 (1252)
                      |.+..+..+.+++.++-..+...+-..+...|.|   ..||++||.|+|+..  .--+..||++|++||.|=|+|.||||
T Consensus       287 P~l~~AqvA~~kiakle~~~~~a~~~~~q~~p~~---~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsG  361 (546)
T COG4615         287 PTLLTAQVAFNKIAKLELAPYKADFPRPQAFPDW---KTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSG  361 (546)
T ss_pred             hHHHHHHHHHHHHHHhhcCCccccCCCCCcCCcc---cceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCc
Confidence            9999999999999877543222111111112222   369999999999743  13578999999999999999999999


Q ss_pred             hHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEEEccccccCcccHHHHhccCCCC-CCHHHHHHHHHHcCchh
Q 000856         1051 KSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEG-ATEAEVVEAARAANVHG 1129 (1252)
Q Consensus      1051 KSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~-~~deei~~al~~~~l~~ 1129 (1252)
                      |||++++|.|+|.|++|+|++||.+++.-+++++|+-++.|+-|.++|+.++      +.+. ++++.+..-+++..+..
T Consensus       362 KST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~  435 (546)
T COG4615         362 KSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAH  435 (546)
T ss_pred             HHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999998764      3333 67777766666665544


Q ss_pred             hHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCc
Q 000856         1130 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRL 1207 (1252)
Q Consensus      1130 ~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl 1207 (1252)
                      ... +.+|==++     ..||-|||.|+|+--|++.+.+|++|||=.+--||.=++...+.+--..  .||||+.|||+-
T Consensus       436 kts-l~d~~fs~-----~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd  509 (546)
T COG4615         436 KTS-LNDGRFSN-----LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD  509 (546)
T ss_pred             hhc-ccCCcccc-----cccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc
Confidence            322 33332222     3699999999999999999999999999999999999999998865433  499999999999


Q ss_pred             hhhhccCEEEEEeCCEEEEec
Q 000856         1208 STIRGVDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1208 ~ti~~~DrI~vl~~G~Ive~G 1228 (1252)
                      .-...+||++.|++|+++|.-
T Consensus       510 ~YF~~ADrll~~~~G~~~e~t  530 (546)
T COG4615         510 HYFIHADRLLEMRNGQLSELT  530 (546)
T ss_pred             hhhhhHHHHHHHhcCceeecc
Confidence            999999999999999999863

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=3.1e-43  Score=386.81  Aligned_cols=226  Identities=51%  Similarity=0.866  Sum_probs=207.0

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++++|++  ...+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus         2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   79 (229)
T cd03254           2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI   79 (229)
T ss_pred             eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence            5899999999963  23489999999999999999999999999999999999999999999999998877777788889


Q ss_pred             eEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 000856          444 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK  523 (1252)
Q Consensus       444 ~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~  523 (1252)
                      +|++|++++++.|++||+.++.+.....++..+++..++.++++.+|.|+++..+....+||||||||++|||||+.+|+
T Consensus        80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~  159 (229)
T cd03254          80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK  159 (229)
T ss_pred             EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            99999999998999999998765555566777777788889999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhc
Q 000856          524 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       524 illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      ++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++..+
T Consensus       160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~  227 (229)
T cd03254         160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK  227 (229)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence            99999999999999999999999998778999999999999988999999999999999988877554

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=2.9e-43  Score=389.22  Aligned_cols=231  Identities=72%  Similarity=1.087  Sum_probs=207.0

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      ++++|++++|++..+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   80 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG   80 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence            47899999997533346899999999999999999999999999999999999999999999999987777777777899


Q ss_pred             EEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000856          445 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI  524 (1252)
Q Consensus       445 ~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~i  524 (1252)
                      |++|++.+++.|++||+.++.+....++....++..++.+++..+|.|+++..+....+||||||||++|||||+.+|++
T Consensus        81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  160 (238)
T cd03249          81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI  160 (238)
T ss_pred             EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999888999999987554445556666667778888899999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhcccch
Q 000856          525 LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAY  595 (1252)
Q Consensus       525 lllDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~  595 (1252)
                      +||||||++||+.+++.+.+.|+++.+|+|+|++||+++.+..||++++|++|++++.|+.+++......+
T Consensus       161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~  231 (238)
T cd03249         161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVY  231 (238)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhH
Confidence            99999999999999999999999887789999999999999889999999999999999988887654433

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=1.3e-43  Score=344.64  Aligned_cols=211  Identities=36%  Similarity=0.574  Sum_probs=189.1

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |.+++|.|+|...+     =.++++|++||++||+||||||||||++++.||..|.+|+|.|+|+|....++.+  +-++
T Consensus         2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVS   74 (231)
T COG3840           2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVS   74 (231)
T ss_pred             ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChh
Confidence            56789999996432     3689999999999999999999999999999999999999999999998877644  6699


Q ss_pred             EEccccccCc-ccHHHHhccCCC-C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPALFA-ASIFDNIAYGKE-G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~lf~-gTIreNl~~~~~-~-----~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      +++||..||. -||.+|+.+|.. .     ...+.+..++.++|+.++.+.+|.           .||||||||+||||+
T Consensus        75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc  143 (231)
T COG3840          75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC  143 (231)
T ss_pred             hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence            9999999996 599999998842 2     234678899999999999999983           699999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcCCC
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 1238 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~~~ 1238 (1252)
                      |+|+-+||+||||.|+||+.-.+++...+.+.+  ++.|+++|||.++.++ .+|+++++++|||+..|+-+++++..+
T Consensus       144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~  222 (231)
T COG3840         144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA  222 (231)
T ss_pred             HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence            999999999999999999999999999998876  4789999999999875 579999999999999999999998643

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=3.2e-43  Score=388.01  Aligned_cols=231  Identities=62%  Similarity=0.943  Sum_probs=208.8

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      |+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (234)
T cd03251           1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG   79 (234)
T ss_pred             CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence            4789999999743 235899999999999999999999999999999999999999999999999988777777788899


Q ss_pred             EEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000856          445 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI  524 (1252)
Q Consensus       445 ~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~i  524 (1252)
                      |++|++.+++.|++||+.++.......+....++..++.+.++.+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus        80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l  159 (234)
T cd03251          80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI  159 (234)
T ss_pred             EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999989999999987654445566666777788889999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhcccchH
Q 000856          525 LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYA  596 (1252)
Q Consensus       525 lllDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~  596 (1252)
                      +||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++....+.|.
T Consensus       160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~  231 (234)
T cd03251         160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYA  231 (234)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchh
Confidence            999999999999999999999999877899999999999998899999999999999999998876655443

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.2e-43  Score=374.81  Aligned_cols=210  Identities=31%  Similarity=0.571  Sum_probs=185.7

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .|+++|++|+|.++   +||+||||+|++|+.+||+||||||||||+|+++|+.+|++|+|.++|.+++....   +.+|
T Consensus         4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I   77 (254)
T COG1121           4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI   77 (254)
T ss_pred             EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence            59999999999632   59999999999999999999999999999999999999999999999998776433   5789


Q ss_pred             EEEccccc---cCcccHHHHhccCCCC----------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 000856         1089 GLVQQEPA---LFAASIFDNIAYGKEG----------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 1155 (1252)
Q Consensus      1089 ~~VpQd~~---lf~gTIreNl~~~~~~----------~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1155 (1252)
                      |||||...   -|+-||+|=+.+|...          .+.+++.+||+++++.++..+       ++|+    |||||+|
T Consensus        78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~~----LSGGQ~Q  146 (254)
T COG1121          78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIGE----LSGGQKQ  146 (254)
T ss_pred             EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------cccc----cCcHHHH
Confidence            99999663   5889999999887321          234889999999999987643       4665    9999999


Q ss_pred             HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000856         1156 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1156 rlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      |+.|||||+.+|++|+|||||+++|+.++..+.+.|+++.+ ||||++|+|+++.+.. +|+|+.|. ++++..|++++.
T Consensus       147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~  225 (254)
T COG1121         147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV  225 (254)
T ss_pred             HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence            99999999999999999999999999999999999999874 8999999999999865 79999886 567889999999


Q ss_pred             hcC
Q 000856         1234 VSR 1236 (1252)
Q Consensus      1234 l~~ 1236 (1252)
                      +..
T Consensus       226 ~~~  228 (254)
T COG1121         226 LTE  228 (254)
T ss_pred             cCH
Confidence            863

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=4.1e-43  Score=387.64  Aligned_cols=232  Identities=56%  Similarity=0.850  Sum_probs=209.7

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      ++++|++++|++.  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~   78 (236)
T cd03253           1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG   78 (236)
T ss_pred             CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence            4789999999632  34899999999999999999999999999999999999999999999999998887777888899


Q ss_pred             EEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000856          445 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI  524 (1252)
Q Consensus       445 ~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~i  524 (1252)
                      |++|++++++.|++||+.++.+.....++...++..++.+.+..+|.|+++.+++++.+||||||||++|||||+++|++
T Consensus        79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l  158 (236)
T cd03253          79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI  158 (236)
T ss_pred             EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999999987655555566666777788888899999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhcccchHHH
Q 000856          525 LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASL  598 (1252)
Q Consensus       525 lllDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~  598 (1252)
                      +||||||++||+.+.+.+.+.|.++.+|+|+|++||+++.+..||++++|++|++++.|+.+++......|...
T Consensus       159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~  232 (236)
T cd03253         159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM  232 (236)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHH
Confidence            99999999999999999999999886689999999999999889999999999999999998887765554443

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1.7e-43  Score=389.96  Aligned_cols=218  Identities=37%  Similarity=0.600  Sum_probs=187.0

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCH---HHHhc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL---KSLRL 1086 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~---~~lR~ 1086 (1252)
                      |+++|++++|++   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.   ..+|+
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~   77 (235)
T cd03261           1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR   77 (235)
T ss_pred             CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence            478999999963   359999999999999999999999999999999999999999999999999987764   56788


Q ss_pred             ccEEEccccccCcc-cHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 000856         1087 KIGLVQQEPALFAA-SIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 1158 (1252)
Q Consensus      1087 ~i~~VpQd~~lf~g-TIreNl~~~~~---~~~d----eei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1158 (1252)
                      .++||||++.+|.+ |++||+.++..   ..+.    +++.++++..++.++...       .+    ..||||||||++
T Consensus        78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~LSgG~~qrv~  146 (235)
T cd03261          78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL-------YP----AELSGGMKKRVA  146 (235)
T ss_pred             ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC-------Ch----hhCCHHHHHHHH
Confidence            99999999999875 99999986421   1232    345666777776554332       22    469999999999


Q ss_pred             HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhc
Q 000856         1159 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1159 LARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~ 1235 (1252)
                      |||||+++|+||||||||++||+.+...+.+.|++..+  ++|||+|||+++.+.. ||+|++|++|++++.|+++++++
T Consensus       147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~  226 (235)
T cd03261         147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA  226 (235)
T ss_pred             HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence            99999999999999999999999999999999998753  7899999999998865 89999999999999999999986


Q ss_pred             CCCchhH
Q 000856         1236 RPDGAYS 1242 (1252)
Q Consensus      1236 ~~~g~y~ 1242 (1252)
                      . ...|.
T Consensus       227 ~-~~~~~  232 (235)
T cd03261         227 S-DDPLV  232 (235)
T ss_pred             C-CChhh
Confidence            4 44443

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.6e-43  Score=399.73  Aligned_cols=222  Identities=23%  Similarity=0.428  Sum_probs=184.6

Q ss_pred             ccEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCC------
Q 000856         1008 GEIELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL------ 1079 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~------ 1079 (1252)
                      ..|+++||+|+|+...  ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.      
T Consensus        20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~   99 (320)
T PRK13631         20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL   99 (320)
T ss_pred             ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence            3599999999996421  23699999999999999999999999999999999999999999999999998653      


Q ss_pred             ----------CHHHHhcccEEEcccc--ccCcccHHHHhccCCC--CCCHHHHHHHHHHcCchhhHhhCCCcCC-CccCC
Q 000856         1080 ----------NLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAEVVEAARAANVHGFVSALPNAYK-TPVGE 1144 (1252)
Q Consensus      1080 ----------~~~~lR~~i~~VpQd~--~lf~gTIreNl~~~~~--~~~deei~~al~~~~l~~~i~~lp~gld-t~vge 1144 (1252)
                                +...+|++++||+|+|  .+|++|++||+.++..  ..++++..+..     .++++.+  |++ .....
T Consensus       100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~  172 (320)
T PRK13631        100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLA-----KFYLNKM--GLDDSYLER  172 (320)
T ss_pred             cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHH-----HHHHHHc--CCChhHhcC
Confidence                      3567899999999998  6899999999987631  23333322111     1222222  332 23455


Q ss_pred             CCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhh-hccCEEEEEeCC
Q 000856         1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDG 1222 (1252)
Q Consensus      1145 ~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti-~~~DrI~vl~~G 1222 (1252)
                      .+.+||||||||++|||||+++|+||||||||++||+.++..+++.|++.. +++|||+|||+++.+ ..||||++|++|
T Consensus       173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G  252 (320)
T PRK13631        173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG  252 (320)
T ss_pred             CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence            667899999999999999999999999999999999999999999998864 589999999999987 569999999999


Q ss_pred             EEEEecChhhhhcC
Q 000856         1223 RIVEQGSHSELVSR 1236 (1252)
Q Consensus      1223 ~Ive~G~~~eLl~~ 1236 (1252)
                      ++++.|+|+++++.
T Consensus       253 ~i~~~g~~~~~~~~  266 (320)
T PRK13631        253 KILKTGTPYEIFTD  266 (320)
T ss_pred             EEEEeCCHHHHhcC
Confidence            99999999987643

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.5e-43  Score=376.06  Aligned_cols=210  Identities=30%  Similarity=0.495  Sum_probs=180.2

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++++|+++   ++|+||||++++|++++|+||||||||||+|+|+|+++|++|+|.+.|.+.+....   +..|
T Consensus         4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I   77 (254)
T COG1121           4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI   77 (254)
T ss_pred             EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence            58999999999743   49999999999999999999999999999999999999999999999988755322   3579


Q ss_pred             eEEccCC---CCchhcHHHHHhcCCCCC----------CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHH
Q 000856          444 GLVNQEP---ALFATTILENILYGKPEA----------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ  510 (1252)
Q Consensus       444 ~~v~Q~~---~l~~~tv~~ni~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkq  510 (1252)
                      |||||..   |-|+-||+|-+.+|....          +.+++.++++.+++.           ...++...+|||||+|
T Consensus        78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-----------~~~~r~i~~LSGGQ~Q  146 (254)
T COG1121          78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-----------DLRDRQIGELSGGQKQ  146 (254)
T ss_pred             EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-----------hhhCCcccccCcHHHH
Confidence            9999965   568889999999984321          124556666655444           4455667799999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC-CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          511 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       511 Rv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      ||.|||||+++|++|+|||||+++|+.++..+.+.|+++++ |+||++||||++.+.. +|+|+.|++ +++..|++++.
T Consensus       147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~  225 (254)
T COG1121         147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEV  225 (254)
T ss_pred             HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhc
Confidence            99999999999999999999999999999999999999964 9999999999999866 899999964 67889999988


Q ss_pred             Hhc
Q 000856          589 IAK  591 (1252)
Q Consensus       589 ~~~  591 (1252)
                      ...
T Consensus       226 ~~~  228 (254)
T COG1121         226 LTE  228 (254)
T ss_pred             cCH
Confidence            664

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-43  Score=362.35  Aligned_cols=213  Identities=34%  Similarity=0.567  Sum_probs=189.9

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCC---HHHHh
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSLR 1085 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~---~~~lR 1085 (1252)
                      .|+++||+.+||+  ++.+|+||||+|++||.|||+|+||||||||+++|.|+.+|++|+|.++|.++...+   +.++|
T Consensus         3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r   80 (258)
T COG3638           3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR   80 (258)
T ss_pred             eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence            4899999999984  457999999999999999999999999999999999999999999999999998877   66789


Q ss_pred             cccEEEccccccCc-ccHHHHhccCCC--------------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 000856         1086 LKIGLVQQEPALFA-ASIFDNIAYGKE--------------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 1150 (1252)
Q Consensus      1086 ~~i~~VpQd~~lf~-gTIreNl~~~~~--------------~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LS 1150 (1252)
                      ++||+|+|++.|-. .|+.+|+..|.-              ..+.....+||+++|+.++.-.           +..+||
T Consensus        81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~LS  149 (258)
T COG3638          81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RASTLS  149 (258)
T ss_pred             HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------HhccCC
Confidence            99999999998874 589999975531              1233456888999999887653           235799


Q ss_pred             hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 000856         1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQ 1227 (1252)
Q Consensus      1151 gGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~ 1227 (1252)
                      |||+||++|||||..+|+|++-|||+|+|||.+...+++.|++..  .|.|||+.-|.++.++. ||||+-|++|+|+-.
T Consensus       150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD  229 (258)
T COG3638         150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD  229 (258)
T ss_pred             cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence            999999999999999999999999999999999999999999875  47999999999999865 699999999999999


Q ss_pred             cChhhhh
Q 000856         1228 GSHSELV 1234 (1252)
Q Consensus      1228 G~~~eLl 1234 (1252)
                      |+++||-
T Consensus       230 g~~~el~  236 (258)
T COG3638         230 GPASELT  236 (258)
T ss_pred             CChhhhh
Confidence            9999864

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.5e-44  Score=377.65  Aligned_cols=213  Identities=34%  Similarity=0.499  Sum_probs=180.5

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCc---cccCCCHHHHh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV---DIKTLQLRWLR  440 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~---~~~~~~~~~~~  440 (1252)
                      .|.++|+++.|+.   ..+++|||++|+.||.+|+.|||||||||||++|+|+..|++|+|.+||.   |.++..  ...
T Consensus         2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~   76 (345)
T COG1118           2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD   76 (345)
T ss_pred             ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence            3788999999974   34899999999999999999999999999999999999999999999999   555432  334


Q ss_pred             hhceEEccCCCCchh-cHHHHHhcCCCCC--------CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHH
Q 000856          441 DQIGLVNQEPALFAT-TILENILYGKPEA--------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR  511 (1252)
Q Consensus       441 ~~i~~v~Q~~~l~~~-tv~~ni~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqR  511 (1252)
                      ++||||+|+..||.. ||++||.||....        ...++.+.++.+++.           ..-.+.+.+||||||||
T Consensus        77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-----------~la~ryP~QLSGGQrQR  145 (345)
T COG1118          77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-----------GLADRYPAQLSGGQRQR  145 (345)
T ss_pred             cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-----------chhhcCchhcChHHHHH
Confidence            579999999999865 9999999997311        122333334444333           33345567999999999


Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          512 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       512 v~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      |||||||+.+|++||||||+++||++.++.+.+.|+++.  -|.|+++||||.+++.. ||||++|++|+|...|+++|+
T Consensus       146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev  225 (345)
T COG1118         146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV  225 (345)
T ss_pred             HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence            999999999999999999999999999999999998875  38999999999999866 899999999999999999999


Q ss_pred             Hhcc
Q 000856          589 IAKA  592 (1252)
Q Consensus       589 ~~~~  592 (1252)
                      ..+.
T Consensus       226 ~~~P  229 (345)
T COG1118         226 YDHP  229 (345)
T ss_pred             hcCC
Confidence            7654

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=3.5e-43  Score=368.24  Aligned_cols=206  Identities=38%  Similarity=0.571  Sum_probs=176.4

Q ss_pred             EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHH---H-
Q 000856         1010 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---L- 1084 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~---l- 1084 (1252)
                      ++++||+..|.... ..++|+++||+|++||.+||+||||||||||+++|.++..|++|.|.++|.|+..++.+.   + 
T Consensus         2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R   81 (226)
T COG1136           2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR   81 (226)
T ss_pred             cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence            57899999996432 246999999999999999999999999999999999999999999999999999888443   3 


Q ss_pred             hcccEEEccccccCc-ccHHHHhccC----CCC--CCHHHHHHHHHHcCchhhHh-hCCCcCCCccCCCCCCCChhHHHH
Q 000856         1085 RLKIGLVQQEPALFA-ASIFDNIAYG----KEG--ATEAEVVEAARAANVHGFVS-ALPNAYKTPVGERGVQLSGGQKQR 1156 (1252)
Q Consensus      1085 R~~i~~VpQd~~lf~-gTIreNl~~~----~~~--~~deei~~al~~~~l~~~i~-~lp~gldt~vge~G~~LSgGQrQr 1156 (1252)
                      |++||+|+|+..|++ -|++||+.++    ...  ..++...+.++..|+.+... ..|           ..||||||||
T Consensus        82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR  150 (226)
T COG1136          82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR  150 (226)
T ss_pred             HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence            567999999998874 6999999842    111  12445566677778776554 333           5799999999


Q ss_pred             HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEEE
Q 000856         1157 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVE 1226 (1252)
Q Consensus      1157 laLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive 1226 (1252)
                      +||||||+.+|+|++.||||.+||.+|...|++.+++..  .|+|+|+|||+......|||++.|.+|++.+
T Consensus       151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~  222 (226)
T COG1136         151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE  222 (226)
T ss_pred             HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence            999999999999999999999999999999999999985  3789999999999999999999999999543

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-43  Score=364.60  Aligned_cols=222  Identities=31%  Similarity=0.492  Sum_probs=181.7

Q ss_pred             cEEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCC-HHHHhh
Q 000856          364 NIEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ-LRWLRD  441 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~~  441 (1252)
                      .++++|+++.|+.+. -.++++||||+|.+||+.+|||+||||||||.++|+|+.+|++|+|.++|.++.... ....++
T Consensus         3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~   82 (252)
T COG1124           3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR   82 (252)
T ss_pred             eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence            479999999997532 124899999999999999999999999999999999999999999999998775542 346778


Q ss_pred             hceEEccCCC--Cchh-cHHHHHhcCCCC----CCHHHHHHHHHHhcHHHHHhhCCCCcc-ccccCCCCCCChHHHHHHH
Q 000856          442 QIGLVNQEPA--LFAT-TILENILYGKPE----ATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIA  513 (1252)
Q Consensus       442 ~i~~v~Q~~~--l~~~-tv~~ni~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~LSgGqkqRv~  513 (1252)
                      .|-+|||||.  |-+- ||++-|.-+...    ....++.++++.+           |+. ....+.+.+||||||||||
T Consensus        83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~V-----------gL~~~~l~R~P~eLSGGQ~QRia  151 (252)
T COG1124          83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQV-----------GLPPSFLDRRPHELSGGQRQRIA  151 (252)
T ss_pred             ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHc-----------CCCHHHHhcCchhcChhHHHHHH
Confidence            8999999995  3332 777777543221    1122333333333           333 3456677799999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          514 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       514 lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      |||||..+|++||||||||+||+.....+++.+.++++  +-|.|+||||+..+.+ ||||+||++|+++|.++.+++..
T Consensus       152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~  231 (252)
T COG1124         152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS  231 (252)
T ss_pred             HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence            99999999999999999999999999999999999875  6699999999999988 89999999999999999999877


Q ss_pred             c-ccchH
Q 000856          591 K-AGAYA  596 (1252)
Q Consensus       591 ~-~~~~~  596 (1252)
                      . ...|.
T Consensus       232 ~~~h~yt  238 (252)
T COG1124         232 HPSHPYT  238 (252)
T ss_pred             CCccHHH
Confidence            6 33443

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.6e-43  Score=404.65  Aligned_cols=220  Identities=34%  Similarity=0.553  Sum_probs=187.0

Q ss_pred             EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHH---HHh
Q 000856          365 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLR  440 (1252)
Q Consensus       365 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~  440 (1252)
                      |+++|++++|++.. ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..   .+|
T Consensus         2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r   81 (343)
T TIGR02314         2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR   81 (343)
T ss_pred             EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            78999999996322 24699999999999999999999999999999999999999999999999999887654   357


Q ss_pred             hhceEEccCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000856          441 DQIGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA  517 (1252)
Q Consensus       441 ~~i~~v~Q~~~l~~-~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARa  517 (1252)
                      ++|+|+||++.+++ .|++||+.++...  ....+..+     .+.+.++.+  |+....+..+.+|||||||||+||||
T Consensus        82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~v~e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IARA  154 (343)
T TIGR02314        82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR-----KVTELLALV--GLGDKHDSYPSNLSGGQKQRVAIARA  154 (343)
T ss_pred             cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence            78999999999986 5999999985321  12222111     112333333  66666677888999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          518 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       518 l~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |+.+|++||||||||+||+.+++.+.+.|+++.+  |.|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~  231 (343)
T TIGR02314       155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH  231 (343)
T ss_pred             HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcC
Confidence            9999999999999999999999999999999853  8999999999999966 899999999999999999998764

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=5.2e-43  Score=383.94  Aligned_cols=219  Identities=53%  Similarity=0.826  Sum_probs=199.2

Q ss_pred             ccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHh
Q 000856         1006 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 1085 (1252)
Q Consensus      1006 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR 1085 (1252)
                      ..+.++++|++++|+++...++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|
T Consensus         8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~   87 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH   87 (226)
T ss_pred             cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence            35679999999999743224699999999999999999999999999999999999999999999999999888877888


Q ss_pred             cccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 000856         1086 LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 1165 (1252)
Q Consensus      1086 ~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 1165 (1252)
                      ++++|+||++.+|.+|++||+.++......+++++..+..++.++++.+|.|+++.+.+....||||||||++|||||++
T Consensus        88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~  167 (226)
T cd03248          88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR  167 (226)
T ss_pred             hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999997654445556666667778889999999899998888899999999999999999999


Q ss_pred             CCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEE
Q 000856         1166 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRI 1224 (1252)
Q Consensus      1166 ~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~I 1224 (1252)
                      +|++|||||||++||+++...+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus       168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i  226 (226)
T cd03248         168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI  226 (226)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence            99999999999999999999999999998777899999999999988999999999974

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=3.3e-43  Score=385.83  Aligned_cols=212  Identities=40%  Similarity=0.642  Sum_probs=185.3

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccC-----CCCCceEEECCcccCCCC--HH
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY-----DPTAGKVMIDGKDIRRLN--LK 1082 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~-----~p~~G~I~idG~di~~~~--~~ 1082 (1252)
                      |+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|++     +|++|+|.++|.++.+.+  ..
T Consensus         1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~   77 (227)
T cd03260           1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL   77 (227)
T ss_pred             CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence            578999999963   35999999999999999999999999999999999999     999999999999998776  56


Q ss_pred             HHhcccEEEccccccCcccHHHHhccCCC--CC-----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 000856         1083 SLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 1155 (1252)
Q Consensus      1083 ~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~~-----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1155 (1252)
                      .+|++++|+||++.+|..|++||+.++..  ..     .++++.++++..++.+.....++         +..|||||||
T Consensus        78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q  148 (227)
T cd03260          78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ  148 (227)
T ss_pred             HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence            78889999999999998899999986421  11     23456778888888765544321         3579999999


Q ss_pred             HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhh
Q 000856         1156 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1156 rlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      |++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus       149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  227 (227)
T cd03260         149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI  227 (227)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence            99999999999999999999999999999999999999865589999999999876 5899999999999999998764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=1.4e-42  Score=387.10  Aligned_cols=237  Identities=32%  Similarity=0.523  Sum_probs=212.2

Q ss_pred             CcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHh
Q 000856          361 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR  440 (1252)
Q Consensus       361 ~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~  440 (1252)
                      ..+.|+++|++++|++. +..+|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...++
T Consensus        16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~   94 (257)
T cd03288          16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR   94 (257)
T ss_pred             CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence            35679999999999742 24589999999999999999999999999999999999999999999999999888887888


Q ss_pred             hhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000856          441 DQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       441 ~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~  520 (1252)
                      +.++|++|+|++|++|++||+..... ...+++..+.+..++.+.+..+|.|+++.+++.+.+||||||||++||||+++
T Consensus        95 ~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~  173 (257)
T cd03288          95 SRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR  173 (257)
T ss_pred             hhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence            89999999999999999999975432 23455666777778888999999999999999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhcc-cchHHHH
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA-GAYASLI  599 (1252)
Q Consensus       521 ~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~  599 (1252)
                      +|+++||||||++||+.+++.+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+.. +.|.+++
T Consensus       174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~  253 (257)
T cd03288         174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV  253 (257)
T ss_pred             CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence            999999999999999999999999999887789999999999999889999999999999999999987654 4444443

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-43  Score=394.62  Aligned_cols=222  Identities=36%  Similarity=0.586  Sum_probs=199.9

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcc
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1087 (1252)
                      ..|+++||+.+|.   +..+++|+||+|++||.++++|||||||||++++|.||..|++|+|.+||.|+..++++.  +.
T Consensus         4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~k--R~   78 (352)
T COG3842           4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK--RP   78 (352)
T ss_pred             ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhh--cc
Confidence            3599999999996   346999999999999999999999999999999999999999999999999999998865  78


Q ss_pred             cEEEccccccCc-ccHHHHhccCCC---CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 000856         1088 IGLVQQEPALFA-ASIFDNIAYGKE---GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 1159 (1252)
Q Consensus      1088 i~~VpQd~~lf~-gTIreNl~~~~~---~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 1159 (1252)
                      |++|+|+..||+ .||+||+.||..   ...    ++.+.++++.+++.++-...|           ..|||||+||+||
T Consensus        79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVAL  147 (352)
T COG3842          79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVAL  147 (352)
T ss_pred             cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHH
Confidence            999999999995 799999999854   122    247889999999999877766           4699999999999


Q ss_pred             HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1160 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1160 ARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti-~~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      ||||..+|++|+||||-|+||..-...++..+++..  -|.|.|+|||+.++. .-+|||.||.+|+|...|+|+|+..+
T Consensus       148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~  227 (352)
T COG3842         148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER  227 (352)
T ss_pred             HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence            999999999999999999999999999999998875  388999999999876 56799999999999999999999999


Q ss_pred             CCchhHHHH
Q 000856         1237 PDGAYSRLL 1245 (1252)
Q Consensus      1237 ~~g~y~~l~ 1245 (1252)
                      |...|-.-+
T Consensus       228 P~~~fVA~F  236 (352)
T COG3842         228 PATRFVADF  236 (352)
T ss_pred             cchHHHHHH
Confidence            887775443

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.5e-43  Score=393.65  Aligned_cols=217  Identities=33%  Similarity=0.565  Sum_probs=192.2

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .++++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI   83 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence            38999999999632223599999999999999999999999999999999999999999999999999888888899999


Q ss_pred             EEEcccc--ccCcccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 000856         1089 GLVQQEP--ALFAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 1160 (1252)
Q Consensus      1089 ~~VpQd~--~lf~gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 1160 (1252)
                      +||+|+|  .++..|++|||.++..  ..+    ++.+.++++.+++.++.+..|           .+||||||||++||
T Consensus        84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA  152 (279)
T PRK13650         84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA  152 (279)
T ss_pred             eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence            9999998  4667899999987632  122    345778888888877665443           47999999999999


Q ss_pred             HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1161 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1161 RALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      |||+++|++|||||||++||+.+...+.+.|++..+  ++|||+|||+++.+..||||++|++|++++.|+++++.+.
T Consensus       153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  230 (279)
T PRK13650        153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR  230 (279)
T ss_pred             HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence            999999999999999999999999999999998753  7999999999999888999999999999999999998765

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-42  Score=386.18  Aligned_cols=220  Identities=33%  Similarity=0.542  Sum_probs=192.9

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC---CCCceEEECCcccCCCCHHHHh
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD---PTAGKVMIDGKDIRRLNLKSLR 1085 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~---p~~G~I~idG~di~~~~~~~lR 1085 (1252)
                      .|+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++   |++|+|.+||.++.+.+...+|
T Consensus         2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~   78 (246)
T PRK14269          2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR   78 (246)
T ss_pred             ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence            3789999999963   359999999999999999999999999999999999985   6999999999999988888889


Q ss_pred             cccEEEccccccCcccHHHHhccCCC--------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 000856         1086 LKIGLVQQEPALFAASIFDNIAYGKE--------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 1157 (1252)
Q Consensus      1086 ~~i~~VpQd~~lf~gTIreNl~~~~~--------~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1157 (1252)
                      ++++|+||++.+|..|++||+.++..        ...++++.++++.+++.+++..+       ....+.+||||||||+
T Consensus        79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv  151 (246)
T PRK14269         79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRL  151 (246)
T ss_pred             hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHH
Confidence            99999999999999999999986521        11234567788888886655432       2344568999999999


Q ss_pred             HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1158 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1158 aLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      +|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus       152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  231 (246)
T PRK14269        152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN  231 (246)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence            999999999999999999999999999999999998877899999999999885 5899999999999999999999875


Q ss_pred             CC
Q 000856         1237 PD 1238 (1252)
Q Consensus      1237 ~~ 1238 (1252)
                      +.
T Consensus       232 ~~  233 (246)
T PRK14269        232 PK  233 (246)
T ss_pred             CC
Confidence            43

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-42  Score=383.37  Aligned_cols=223  Identities=34%  Similarity=0.606  Sum_probs=193.5

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .++++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i   79 (241)
T PRK14250          3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI   79 (241)
T ss_pred             eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence            4899999999963   3599999999999999999999999999999999999999999999999999888888889999


Q ss_pred             EEEccccccCcccHHHHhccCCC--CCCHHHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 000856         1089 GLVQQEPALFAASIFDNIAYGKE--GATEAEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 1165 (1252)
Q Consensus      1089 ~~VpQd~~lf~gTIreNl~~~~~--~~~deei~~al~~~~l~-~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 1165 (1252)
                      +|+||++.+|+.|+++|+.++..  ...++++.+.++..++. ++..           .....||||||||++||||+++
T Consensus        80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LS~G~~qrl~la~al~~  148 (241)
T PRK14250         80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYAT-----------RDVKNLSGGEAQRVSIARTLAN  148 (241)
T ss_pred             EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhh-----------CCcccCCHHHHHHHHHHHHHhc
Confidence            99999999999999999986532  12244566777777764 2222           2345799999999999999999


Q ss_pred             CCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcCCCchhH
Q 000856         1166 NPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYS 1242 (1252)
Q Consensus      1166 ~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~ 1242 (1252)
                      +|++|||||||++||+.+...+.+.|++..  .++|+|++||+++.+.. ||+|++|++|++++.|++++++..+...|.
T Consensus       149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~  228 (241)
T PRK14250        149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT  228 (241)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence            999999999999999999999999999874  37899999999999865 899999999999999999999876554565


Q ss_pred             HHH
Q 000856         1243 RLL 1245 (1252)
Q Consensus      1243 ~l~ 1245 (1252)
                      +.+
T Consensus       229 ~~~  231 (241)
T PRK14250        229 KLF  231 (241)
T ss_pred             HHH
Confidence            444

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=2e-42  Score=378.18  Aligned_cols=219  Identities=35%  Similarity=0.561  Sum_probs=201.9

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .++++|++++|+.. +..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus         2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   80 (221)
T cd03244           2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI   80 (221)
T ss_pred             cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence            58999999999743 24589999999999999999999999999999999999999999999999999888888888899


Q ss_pred             eEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 000856          444 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK  523 (1252)
Q Consensus       444 ~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~  523 (1252)
                      +|++|++.+++.|++||+.+... ...+++..+++..++.+++..+|.|+++..++.+.+||||||||++|||||+.+|+
T Consensus        81 ~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~  159 (221)
T cd03244          81 SIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK  159 (221)
T ss_pred             EEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            99999999998999999986543 34567777888888889999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecC
Q 000856          524 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT  584 (1252)
Q Consensus       524 illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~  584 (1252)
                      ++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+..||++++|++|++++.|+
T Consensus       160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS  220 (221)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence            9999999999999999999999999877899999999999998899999999999998775

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-42  Score=401.36  Aligned_cols=222  Identities=39%  Similarity=0.622  Sum_probs=189.7

Q ss_pred             EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHH---Hh
Q 000856         1010 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LR 1085 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~---lR 1085 (1252)
                      |+++||+++|+... +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++...   +|
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~   81 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR   81 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            78999999996211 346999999999999999999999999999999999999999999999999998877654   57


Q ss_pred             cccEEEccccccCc-ccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 000856         1086 LKIGLVQQEPALFA-ASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 1158 (1252)
Q Consensus      1086 ~~i~~VpQd~~lf~-gTIreNl~~~~~--~~~d----eei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1158 (1252)
                      ++++||||++.+|. .|++||+.++..  ..+.    +++.++++..++.++....           ...||||||||++
T Consensus        82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qRv~  150 (343)
T PRK11153         82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRY-----------PAQLSGGQKQRVA  150 (343)
T ss_pred             cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence            89999999999886 799999986421  1222    3456677777765544332           3469999999999


Q ss_pred             HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhc
Q 000856         1159 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1159 LARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~ 1235 (1252)
                      |||||+++|+||||||||++||+.+...+++.|++..+  ++|+|++||+++.+.. ||+|++|++|++++.|++++++.
T Consensus       151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~  230 (343)
T PRK11153        151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS  230 (343)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999998753  7899999999999865 89999999999999999999987


Q ss_pred             CCCchhH
Q 000856         1236 RPDGAYS 1242 (1252)
Q Consensus      1236 ~~~g~y~ 1242 (1252)
                      .+...+.
T Consensus       231 ~~~~~~~  237 (343)
T PRK11153        231 HPKHPLT  237 (343)
T ss_pred             CCCcHHH
Confidence            6544443

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=2.2e-42  Score=373.45  Aligned_cols=206  Identities=34%  Similarity=0.575  Sum_probs=183.9

Q ss_pred             CccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHH
Q 000856         1005 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 1084 (1252)
Q Consensus      1005 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~l 1084 (1252)
                      +..+.++++|++++|+.. ..++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+
T Consensus         2 ~~~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~   80 (207)
T cd03369           2 PEHGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL   80 (207)
T ss_pred             CCCCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence            445679999999999642 2369999999999999999999999999999999999999999999999999988888888


Q ss_pred             hcccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 000856         1085 RLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 1164 (1252)
Q Consensus      1085 R~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl 1164 (1252)
                      |++++||||+|.+|++|+++|+.+.. ..+++++.++++                  +......|||||+||++||||++
T Consensus        81 ~~~i~~v~q~~~~~~~tv~~~l~~~~-~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~  141 (207)
T cd03369          81 RSSLTIIPQDPTLFSGTIRSNLDPFD-EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALL  141 (207)
T ss_pred             HhhEEEEecCCcccCccHHHHhcccC-CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHh
Confidence            99999999999999999999998653 245555555443                  22345679999999999999999


Q ss_pred             cCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecCh
Q 000856         1165 KNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 1230 (1252)
Q Consensus      1165 ~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~ 1230 (1252)
                      ++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus       142 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~  207 (207)
T cd03369         142 KRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP  207 (207)
T ss_pred             hCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence            999999999999999999999999999998778999999999999988999999999999998874

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-42  Score=399.82  Aligned_cols=219  Identities=32%  Similarity=0.520  Sum_probs=193.4

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .|+++|++++|++  +.++|+|+||+|++||.+||+||||||||||+++|+|+.+|++|+|.+||.++.+.++.  +++|
T Consensus         3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i   78 (356)
T PRK11650          3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI   78 (356)
T ss_pred             EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence            3899999999942  23699999999999999999999999999999999999999999999999999887764  4789


Q ss_pred             EEEccccccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 000856         1089 GLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161 (1252)
Q Consensus      1089 ~~VpQd~~lf~-gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 1161 (1252)
                      +||||++.+|. .|++||+.++..  ..+    ++++.++++..++.++....|           ..||||||||+||||
T Consensus        79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR  147 (356)
T PRK11650         79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR  147 (356)
T ss_pred             EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence            99999999995 699999997632  122    245678888889887766655           469999999999999


Q ss_pred             HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcCCC
Q 000856         1162 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 1238 (1252)
Q Consensus      1162 ALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~~~ 1238 (1252)
                      ||+++|++||||||||+||+.+...+.+.|++..+  +.|+|+|||+++.+. .||+|++|++|++++.|+++++.+++.
T Consensus       148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~  227 (356)
T PRK11650        148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA  227 (356)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence            99999999999999999999999999999998753  789999999999774 589999999999999999999998876


Q ss_pred             chhH
Q 000856         1239 GAYS 1242 (1252)
Q Consensus      1239 g~y~ 1242 (1252)
                      ..|.
T Consensus       228 ~~~~  231 (356)
T PRK11650        228 STFV  231 (356)
T ss_pred             cHHH
Confidence            5554

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-42  Score=362.91  Aligned_cols=197  Identities=38%  Similarity=0.573  Sum_probs=176.4

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .+++++|+.+|..   ..||+|+||+|++||.|+|+||||||||||++++.|+.+|++|+|.++|.++...     ...+
T Consensus         3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~   74 (248)
T COG1116           3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI   74 (248)
T ss_pred             eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence            4889999999964   4699999999999999999999999999999999999999999999999988443     4679


Q ss_pred             EEEccccccCc-ccHHHHhccCCCCC------CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 000856         1089 GLVQQEPALFA-ASIFDNIAYGKEGA------TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161 (1252)
Q Consensus      1089 ~~VpQd~~lf~-gTIreNl~~~~~~~------~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 1161 (1252)
                      +||+|++.||+ -|+++|+.++....      ..+.+.+.++.+|+.+|-+..|           ..||||||||+||||
T Consensus        75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR  143 (248)
T COG1116          75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR  143 (248)
T ss_pred             EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence            99999999997 59999999874421      2456888999999999988877           469999999999999


Q ss_pred             HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhh-hccCEEEEEeC--CEE
Q 000856         1162 AVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTI-RGVDCIGVVQD--GRI 1224 (1252)
Q Consensus      1162 ALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti-~~~DrI~vl~~--G~I 1224 (1252)
                      ||+.+|+||+||||.+|||+.|...+++.+.+..  .++||++|||++++. .-+|||+||.+  |+|
T Consensus       144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i  211 (248)
T COG1116         144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI  211 (248)
T ss_pred             HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence            9999999999999999999999999999998865  369999999999876 55799999999  555

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-42  Score=398.62  Aligned_cols=219  Identities=33%  Similarity=0.547  Sum_probs=193.0

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .|+++||+++|++   .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.++.  ++++
T Consensus         6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i   80 (351)
T PRK11432          6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI   80 (351)
T ss_pred             EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence            5999999999963   3589999999999999999999999999999999999999999999999999877653  5789


Q ss_pred             EEEccccccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 000856         1089 GLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161 (1252)
Q Consensus      1089 ~~VpQd~~lf~-gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 1161 (1252)
                      +||+|++.+|. .|++||+.++..  ..+    ++++.++++..++.++....|           ..||||||||+||||
T Consensus        81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~LSgGq~QRVaLAR  149 (351)
T PRK11432         81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQISGGQQQRVALAR  149 (351)
T ss_pred             EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence            99999999996 599999998632  122    356678888888876654443           479999999999999


Q ss_pred             HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcCCC
Q 000856         1162 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 1238 (1252)
Q Consensus      1162 ALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~~~ 1238 (1252)
                      ||+++|++|+||||||+||+.+...+++.|+++.+  ++|+|+|||+++.+. -||||++|++|+|++.|+|+++.+++.
T Consensus       150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~  229 (351)
T PRK11432        150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA  229 (351)
T ss_pred             HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence            99999999999999999999999999999998754  789999999999874 589999999999999999999998877


Q ss_pred             chhHH
Q 000856         1239 GAYSR 1243 (1252)
Q Consensus      1239 g~y~~ 1243 (1252)
                      ..|..
T Consensus       230 ~~~~a  234 (351)
T PRK11432        230 SRFMA  234 (351)
T ss_pred             chHHH
Confidence            65543

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=3.8e-42  Score=375.68  Aligned_cols=219  Identities=43%  Similarity=0.708  Sum_probs=198.0

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .++++|++++|++. +..+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++...+...+++.+
T Consensus         2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   80 (220)
T cd03245           2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI   80 (220)
T ss_pred             eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence            58999999999642 24589999999999999999999999999999999999999999999999998777766677889


Q ss_pred             eEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 000856          444 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK  523 (1252)
Q Consensus       444 ~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~  523 (1252)
                      +|++|+++++..|++||+.++......+++...++..++.+.++..|.|+++.+.+...+||||||||++||||++.+|+
T Consensus        81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~  160 (220)
T cd03245          81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP  160 (220)
T ss_pred             EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence            99999999988899999988754444556677778888888889999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEec
Q 000856          524 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETG  583 (1252)
Q Consensus       524 illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g  583 (1252)
                      ++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus       161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~  220 (220)
T cd03245         161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG  220 (220)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence            999999999999999999999999986668999999999988779999999999998654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-42  Score=394.44  Aligned_cols=222  Identities=27%  Similarity=0.457  Sum_probs=188.3

Q ss_pred             ccEEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCC------
Q 000856          363 GNIEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL------  434 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~------  434 (1252)
                      ..|+++|++|+|++..  ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.      
T Consensus        20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~   99 (320)
T PRK13631         20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL   99 (320)
T ss_pred             ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence            3589999999997432  23599999999999999999999999999999999999999999999999988653      


Q ss_pred             ----------CHHHHhhhceEEccCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCcc-ccccC
Q 000856          435 ----------QLRWLRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS-TQVGE  499 (1252)
Q Consensus       435 ----------~~~~~~~~i~~v~Q~~--~l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~  499 (1252)
                                ....+|++++||+|+|  ++|+.|++||+.++...  .+.++...     .+.+.++.+  |+. ...++
T Consensus       100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~  172 (320)
T PRK13631        100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKM--GLDDSYLER  172 (320)
T ss_pred             cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCChhHhcC
Confidence                      3456788999999998  68888999999987421  22222211     122444554  664 46788


Q ss_pred             CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchh-ccCEEEEEeCC
Q 000856          500 RGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIR-NVDTVAVIQQG  577 (1252)
Q Consensus       500 ~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~~l~~G  577 (1252)
                      .+.+||||||||++|||||+++|++|||||||++||+.+++.+.+.|.++. +|+|+|+|||+++.+. .||+|++|++|
T Consensus       173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G  252 (320)
T PRK13631        173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG  252 (320)
T ss_pred             CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence            899999999999999999999999999999999999999999999998874 5899999999999875 59999999999


Q ss_pred             EEEEecChHHHHhc
Q 000856          578 QVVETGTHEELIAK  591 (1252)
Q Consensus       578 ~i~~~g~~~~l~~~  591 (1252)
                      ++++.|+++++...
T Consensus       253 ~i~~~g~~~~~~~~  266 (320)
T PRK13631        253 KILKTGTPYEIFTD  266 (320)
T ss_pred             EEEEeCCHHHHhcC
Confidence            99999999988654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.1e-42  Score=398.64  Aligned_cols=218  Identities=34%  Similarity=0.537  Sum_probs=191.9

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .|+++||+++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++.  ++.+
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i   78 (353)
T TIGR03265         4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY   78 (353)
T ss_pred             EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence            4899999999963   3589999999999999999999999999999999999999999999999999887764  6789


Q ss_pred             EEEccccccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 000856         1089 GLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161 (1252)
Q Consensus      1089 ~~VpQd~~lf~-gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 1161 (1252)
                      +||+|++.+|. .|++||+.++..  ..+    ++.+.++++..++.++.+..|           ..||||||||+||||
T Consensus        79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRvaLAR  147 (353)
T TIGR03265        79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQLSGGQQQRVALAR  147 (353)
T ss_pred             EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hhCCHHHHHHHHHHH
Confidence            99999999995 699999997632  112    345677778887776655433           579999999999999


Q ss_pred             HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcCCC
Q 000856         1162 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 1238 (1252)
Q Consensus      1162 ALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~~~ 1238 (1252)
                      ||+++|++|+||||||+||..+...+++.|++..+  +.|+|+|||+++.+. -||+|++|++|++++.|+|+++.+++.
T Consensus       148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~  227 (353)
T TIGR03265       148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA  227 (353)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence            99999999999999999999999999999998753  789999999999874 589999999999999999999998876


Q ss_pred             chhH
Q 000856         1239 GAYS 1242 (1252)
Q Consensus      1239 g~y~ 1242 (1252)
                      ..|.
T Consensus       228 ~~~~  231 (353)
T TIGR03265       228 TPFV  231 (353)
T ss_pred             CHHH
Confidence            6553

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-42  Score=390.02  Aligned_cols=216  Identities=33%  Similarity=0.552  Sum_probs=185.5

Q ss_pred             EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCC--HHHHh
Q 000856         1010 IELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN--LKSLR 1085 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~--~~~lR 1085 (1252)
                      |+++||+++|+...  ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+  ...+|
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR   82 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence            78999999996421  136999999999999999999999999999999999999999999999999998743  45788


Q ss_pred             cccEEEcccc--ccCcccHHHHhccCCC--CCCH----HHHHHHHHHcCch--hhHhhCCCcCCCccCCCCCCCChhHHH
Q 000856         1086 LKIGLVQQEP--ALFAASIFDNIAYGKE--GATE----AEVVEAARAANVH--GFVSALPNAYKTPVGERGVQLSGGQKQ 1155 (1252)
Q Consensus      1086 ~~i~~VpQd~--~lf~gTIreNl~~~~~--~~~d----eei~~al~~~~l~--~~i~~lp~gldt~vge~G~~LSgGQrQ 1155 (1252)
                      ++++||||+|  .+|..|++||+.++..  ..+.    +.+.++++.+++.  ++           .......|||||||
T Consensus        83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~~LSgGq~q  151 (287)
T PRK13637         83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDY-----------KDKSPFELSGGQKR  151 (287)
T ss_pred             hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhh-----------ccCCcccCCHHHHH
Confidence            9999999998  5789999999986521  2333    3456677777764  22           22334579999999


Q ss_pred             HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhh
Q 000856         1156 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSE 1232 (1252)
Q Consensus      1156 rlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~e 1232 (1252)
                      |++|||||+.+|++|||||||++||+.+...+++.|+++.+  ++|||+|||+++.+. .||||++|++|++++.|++++
T Consensus       152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~  231 (287)
T PRK13637        152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE  231 (287)
T ss_pred             HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999999999998753  789999999999885 589999999999999999999


Q ss_pred             hhcC
Q 000856         1233 LVSR 1236 (1252)
Q Consensus      1233 Ll~~ 1236 (1252)
                      +++.
T Consensus       232 ~~~~  235 (287)
T PRK13637        232 VFKE  235 (287)
T ss_pred             HHhC
Confidence            8753

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=100.00  E-value=8e-39  Score=375.66  Aligned_cols=470  Identities=18%  Similarity=0.169  Sum_probs=350.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccCCchhH------HHHHHhhHHHH
Q 000856           82 EVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDI------VFSVSTDTLLV  155 (1252)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l------~s~l~~d~~~i  155 (1252)
                      .++..+..|..++.+.......+.|+......+.-.-|-+.++++-++..-.|+..  ..|.+      =.|++.|+...
T Consensus        84 ~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~--~~~~~~~~dNpDQRi~eDi~~~  161 (604)
T COG4178          84 AFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA--QAGGIGLIDNPDQRIQEDIRNF  161 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--hcccccCCCChHHhHHHHHHHH
Confidence            34444556666666666677777777777777777888888888888887444432  23322      36999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000856          156 QDAISEKVGNFIHYLSTFLAGLVVGFVSAW---------------RLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESY  220 (1252)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------------~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~  220 (1252)
                      .+...+....++.++.+++...+++.-.+-               .+..++++.+++--++..+++|.+.+..-+..+..
T Consensus       162 t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~E  241 (604)
T COG4178         162 TETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLE  241 (604)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHH
Confidence            998888878888887776665555442221               12223334444445566688888888888888888


Q ss_pred             HHHHHHHHHHHhhHHHHHHHcchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000856          221 ANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLK----LGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRN  296 (1252)
Q Consensus       221 ~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  296 (1252)
                      +++-....-..++...|-.|+.|+.+.++.++......+    ...+..++..+..+    ...++.++-+..++.....
T Consensus       242 A~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~g----y~~~s~v~P~li~ap~~f~  317 (604)
T COG4178         242 ADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLG----YGWLSVVLPILIAAPRYFS  317 (604)
T ss_pred             HHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhh----hhHHHHHHHHHhccHhhhc
Confidence            888888888889999999999999888776655544443    33333333333333    3333333334455666778


Q ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----CCCCCCCCCC--cCCCCcccEEEEe
Q 000856          297 GVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKP-----SIIQDPTNGR--CLDEVNGNIEFKN  369 (1252)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~-----~~~~~~~~~~--~~~~~~~~i~~~~  369 (1252)
                      |.++.|.+..+..........++-+...+..+..-++...|+.++.+.-.     ..........  ..+..+..|+++|
T Consensus       318 g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~n  397 (604)
T COG4178         318 GQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLEN  397 (604)
T ss_pred             CcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEee
Confidence            99999988776655555556777777888889999999999998874321     1000010000  0011146799999


Q ss_pred             EEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhceEEccC
Q 000856          370 VTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQE  449 (1252)
Q Consensus       370 v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~  449 (1252)
                      ++..-|+.  ...+++.||++++||.+.|.||||||||||+|+|+|+++--+|+|....           ...+-|+||.
T Consensus       398 l~l~~p~~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~  464 (604)
T COG4178         398 LSLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQR  464 (604)
T ss_pred             eeEECCCC--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCC
Confidence            99998754  3689999999999999999999999999999999999999999997752           1358999999


Q ss_pred             CCCchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 000856          450 PALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLL  527 (1252)
Q Consensus       450 ~~l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illl  527 (1252)
                      |.+-.||.||-++|+...  .+++++.+++.+|++.+.++++.+     ..+-...||+|||||+|+||.++++|++++|
T Consensus       465 PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~-----~~~W~~vLS~GEqQRlafARilL~kP~~v~L  539 (604)
T COG4178         465 PYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE-----EDRWDRVLSGGEQQRLAFARLLLHKPKWVFL  539 (604)
T ss_pred             CCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc-----cCcHhhhcChhHHHHHHHHHHHHcCCCEEEE
Confidence            999999999999998654  689999999999999999988743     2234567999999999999999999999999


Q ss_pred             eCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEe
Q 000856          528 DEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQ  575 (1252)
Q Consensus       528 DEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~  575 (1252)
                      ||+|||||++++..+.+.+++...+.|+|-|.||.......++.+-+.
T Consensus       540 DEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~  587 (604)
T COG4178         540 DEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL  587 (604)
T ss_pred             ecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence            999999999999999999999888999999999988777777766554

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.3e-42  Score=383.34  Aligned_cols=224  Identities=33%  Similarity=0.522  Sum_probs=191.6

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCcccCC--CCH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--LNL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-----~~G~I~idG~di~~--~~~ 1081 (1252)
                      -|+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.+||.++..  .+.
T Consensus         7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   83 (254)
T PRK14273          7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI   83 (254)
T ss_pred             eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence            5999999999963   3599999999999999999999999999999999999997     48999999999853  345


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCCC--C-C----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-A----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~-~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      ..+|++++|+||++.+|..|++||+.++..  . .    .++.+.++++.+++.+.+   ++.+++.    ..+||||||
T Consensus        84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~LSgG~~  156 (254)
T PRK14273         84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNTN----ALSLSGGQQ  156 (254)
T ss_pred             HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhCC----cccCCHHHH
Confidence            567899999999999999999999986521  1 1    134566777777775433   2344554    457999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||++|||||+++|++|||||||++||+.+...+++.|+++.+++|+|+|||+++.+. .||||++|++|++++.|+++++
T Consensus       157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  236 (254)
T PRK14273        157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL  236 (254)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999999877899999999999985 4899999999999999999999


Q ss_pred             hcCCCchhH
Q 000856         1234 VSRPDGAYS 1242 (1252)
Q Consensus      1234 l~~~~g~y~ 1242 (1252)
                      .+++...|.
T Consensus       237 ~~~~~~~~~  245 (254)
T PRK14273        237 FFNPKNTKT  245 (254)
T ss_pred             HhCCCChHH
Confidence            876554443

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=2.4e-42  Score=396.82  Aligned_cols=208  Identities=36%  Similarity=0.572  Sum_probs=184.3

Q ss_pred             ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHH----hcccEEEccccccCc-
Q 000856         1025 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL----RLKIGLVQQEPALFA- 1099 (1252)
Q Consensus      1025 ~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~l----R~~i~~VpQd~~lf~- 1099 (1252)
                      .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|++||.|+...+...+    |++++||||++.+|+ 
T Consensus         6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~   85 (363)
T TIGR01186         6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH   85 (363)
T ss_pred             ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence            358999999999999999999999999999999999999999999999999999998887    789999999999997 


Q ss_pred             ccHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 000856         1100 ASIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD 1173 (1252)
Q Consensus      1100 gTIreNl~~~~~--~~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLD 1173 (1252)
                      .|++||+.++..  ..    ..+++.++++.+++.++....|           .+||||||||++|||||+++|+|||||
T Consensus        86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD  154 (363)
T TIGR01186        86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD  154 (363)
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            599999987532  11    2356778888888876655544           479999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhhhhcCCCchhHH
Q 000856         1174 EATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 1243 (1252)
Q Consensus      1174 EpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti-~~~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~ 1243 (1252)
                      ||||+||+.+...+++.+.++.  .++|+|+|||+++.+ +.||||++|++|++++.|+|+++++++...|.+
T Consensus       155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~~  227 (363)
T TIGR01186       155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVE  227 (363)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHHH
Confidence            9999999999999999998874  379999999999986 558999999999999999999999876555543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.7e-42  Score=380.66  Aligned_cols=222  Identities=36%  Similarity=0.576  Sum_probs=189.8

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-----CceEEECCcccCCC--CHH
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-----AGKVMIDGKDIRRL--NLK 1082 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~-----~G~I~idG~di~~~--~~~ 1082 (1252)
                      ++++||+++|++   .++++|+||+|++||++||+|+||||||||+++|.|+++|+     +|+|.+||.++...  +..
T Consensus         2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~   78 (247)
T TIGR00972         2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV   78 (247)
T ss_pred             EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence            789999999963   35999999999999999999999999999999999999998     99999999998763  456


Q ss_pred             HHhcccEEEccccccCcccHHHHhccCCC--C-CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 000856         1083 SLRLKIGLVQQEPALFAASIFDNIAYGKE--G-AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 1155 (1252)
Q Consensus      1083 ~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~-~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1155 (1252)
                      .+|++++|+||++.+|..|++||+.++..  . .+    ++++.++++..++.+++..   .++    .....|||||||
T Consensus        79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~----~~~~~LSgG~~q  151 (247)
T TIGR00972        79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD---RLH----DSALGLSGGQQQ  151 (247)
T ss_pred             HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh---Hhh----CCcccCCHHHHH
Confidence            77889999999999999999999986421  1 11    2456777888888644321   122    234579999999


Q ss_pred             HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhh
Q 000856         1156 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1156 rlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      |++|||||+++|+++||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|++++++
T Consensus       152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  231 (247)
T TIGR00972       152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF  231 (247)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999999999999999999999999998876789999999999885 48999999999999999999998


Q ss_pred             cCCCchh
Q 000856         1235 SRPDGAY 1241 (1252)
Q Consensus      1235 ~~~~g~y 1241 (1252)
                      ..+...+
T Consensus       232 ~~~~~~~  238 (247)
T TIGR00972       232 TNPKEKR  238 (247)
T ss_pred             hCCCChH
Confidence            7544444

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.4e-42  Score=385.86  Aligned_cols=213  Identities=33%  Similarity=0.590  Sum_probs=188.6

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      -|+++||+++|+.  ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++...+...+|+++
T Consensus         4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i   81 (274)
T PRK13647          4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV   81 (274)
T ss_pred             eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence            4899999999963  23599999999999999999999999999999999999999999999999999888888889999


Q ss_pred             EEEcccc--ccCcccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 000856         1089 GLVQQEP--ALFAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 1160 (1252)
Q Consensus      1089 ~~VpQd~--~lf~gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 1160 (1252)
                      +||||+|  .+|..|+++|+.++..  ..+    ++++.++++.+++.++....|           ..||||||||++||
T Consensus        82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la  150 (274)
T PRK13647         82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA  150 (274)
T ss_pred             EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence            9999998  6788999999987521  122    345677888888876655544           36999999999999


Q ss_pred             HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhh
Q 000856         1161 RAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1161 RALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      |||+++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||||++|++|++++.|+++++.
T Consensus       151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  226 (274)
T PRK13647        151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT  226 (274)
T ss_pred             HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence            99999999999999999999999999999999875 4799999999999984 58999999999999999987653

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-42  Score=386.45  Aligned_cols=216  Identities=33%  Similarity=0.561  Sum_probs=191.5

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      -++++||+++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.+
T Consensus         5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13635          5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV   83 (279)
T ss_pred             eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence            38999999999632 24699999999999999999999999999999999999999999999999999988888888999


Q ss_pred             EEEcccc--ccCcccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 000856         1089 GLVQQEP--ALFAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 1160 (1252)
Q Consensus      1089 ~~VpQd~--~lf~gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 1160 (1252)
                      +|+||++  .++..|++|||.++..  ..+    ++++.++++..++.+++...|           ..||||||||++||
T Consensus        84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la  152 (279)
T PRK13635         84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA  152 (279)
T ss_pred             EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence            9999998  4678899999987521  122    244677788888877766554           36999999999999


Q ss_pred             HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1161 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1161 RALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      |||+.+|+||||||||++||+.+...+++.|+++.+  ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus       153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  230 (279)
T PRK13635        153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS  230 (279)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence            999999999999999999999999999999998763  7899999999999988999999999999999999988764

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=6.5e-42  Score=378.20  Aligned_cols=213  Identities=36%  Similarity=0.543  Sum_probs=183.2

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      ++++||+++|++   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.  .+++++
T Consensus         3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~   77 (239)
T cd03296           3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG   77 (239)
T ss_pred             EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence            789999999963   369999999999999999999999999999999999999999999999999876553  367899


Q ss_pred             EEccccccCc-ccHHHHhccCCCC--C----C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 000856         1090 LVQQEPALFA-ASIFDNIAYGKEG--A----T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 1158 (1252)
Q Consensus      1090 ~VpQd~~lf~-gTIreNl~~~~~~--~----~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1158 (1252)
                      |+||+|.+|. .|++||+.++...  .    .    ++++.++++..++.++....           ..+||||||||++
T Consensus        78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~  146 (239)
T cd03296          78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQLSGGQRQRVA  146 (239)
T ss_pred             EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHH
Confidence            9999999885 6999999875321  1    1    23455667777765544332           3479999999999


Q ss_pred             HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhc
Q 000856         1159 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1159 LARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~ 1235 (1252)
                      |||||+++|++|||||||++||+++...+.+.|++..+  ++|||++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus       147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (239)
T cd03296         147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD  226 (239)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence            99999999999999999999999999999999998753  789999999999875 489999999999999999999986


Q ss_pred             CCC
Q 000856         1236 RPD 1238 (1252)
Q Consensus      1236 ~~~ 1238 (1252)
                      .+.
T Consensus       227 ~~~  229 (239)
T cd03296         227 HPA  229 (239)
T ss_pred             CCC
Confidence            533

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.4e-42  Score=382.52  Aligned_cols=220  Identities=33%  Similarity=0.567  Sum_probs=189.5

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCcccCC--CCH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~-----p~~G~I~idG~di~~--~~~ 1081 (1252)
                      .|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.+||.++..  .+.
T Consensus         6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   82 (253)
T PRK14242          6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV   82 (253)
T ss_pred             EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence            4999999999963   359999999999999999999999999999999999975     689999999999865  345


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCCC--C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~-----~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      ..+|++++|+||++.+|..|++||+.++..  .     ..++++.++++.+++.+++..       .......+||||||
T Consensus        83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~  155 (253)
T PRK14242         83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ  155 (253)
T ss_pred             HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence            678899999999999999999999986421  1     123456777888887654432       12334567999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||++|||||+++|++|||||||++||+.+...+.+.|++..+++|||++||+++.+. .||+|++|++|+|++.|+++++
T Consensus       156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  235 (253)
T PRK14242        156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI  235 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999999866789999999999985 5899999999999999999999


Q ss_pred             hcCCC
Q 000856         1234 VSRPD 1238 (1252)
Q Consensus      1234 l~~~~ 1238 (1252)
                      .+.+.
T Consensus       236 ~~~~~  240 (253)
T PRK14242        236 FTRPR  240 (253)
T ss_pred             HcCCC
Confidence            86544

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=6e-42  Score=375.58  Aligned_cols=219  Identities=51%  Similarity=0.837  Sum_probs=194.8

Q ss_pred             CcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHh
Q 000856          361 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR  440 (1252)
Q Consensus       361 ~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~  440 (1252)
                      ..+.++++|++++|++..+..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++
T Consensus         8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~   87 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH   87 (226)
T ss_pred             cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence            34679999999999753234589999999999999999999999999999999999999999999999998777777777


Q ss_pred             hhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000856          441 DQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       441 ~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~  520 (1252)
                      +.++|++|++.+|+.|++||+.++.......+.........+.++++.+|.|+++.+++.+.+||||||||++|||||+.
T Consensus        88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~  167 (226)
T cd03248          88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR  167 (226)
T ss_pred             hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence            88999999999998999999998754444444444445556778888998899988999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEE
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQV  579 (1252)
Q Consensus       521 ~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i  579 (1252)
                      +|+++||||||++||+.+++.+.+.++++.+++|+|++||+++.+..||+|++|++|++
T Consensus       168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i  226 (226)
T cd03248         168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI  226 (226)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence            99999999999999999999999999998777999999999999988999999999874

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=5.2e-42  Score=395.48  Aligned_cols=217  Identities=35%  Similarity=0.541  Sum_probs=190.0

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++|++++|++   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++||.++...+.  .+++++
T Consensus         3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~   77 (353)
T PRK10851          3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG   77 (353)
T ss_pred             EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence            889999999963   359999999999999999999999999999999999999999999999999987654  467899


Q ss_pred             EEccccccCc-ccHHHHhccCCC------CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 000856         1090 LVQQEPALFA-ASIFDNIAYGKE------GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 1158 (1252)
Q Consensus      1090 ~VpQd~~lf~-gTIreNl~~~~~------~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1158 (1252)
                      ||+|++.+|. .|++||+.++..      ..+    ++++.++++..++.++....|           ..||||||||++
T Consensus        78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRva  146 (353)
T PRK10851         78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVA  146 (353)
T ss_pred             EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHH
Confidence            9999999997 599999987632      112    345677788888866554433           469999999999


Q ss_pred             HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhc
Q 000856         1159 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1159 LARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~ 1235 (1252)
                      |||||+++|++||||||||+||+.+...+.+.|+++.+  ++|+|+|||+++.+. .||||++|++|+|++.|+++++.+
T Consensus       147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~  226 (353)
T PRK10851        147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR  226 (353)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999999999999998763  789999999999875 489999999999999999999998


Q ss_pred             CCCchhH
Q 000856         1236 RPDGAYS 1242 (1252)
Q Consensus      1236 ~~~g~y~ 1242 (1252)
                      ++...|.
T Consensus       227 ~p~~~~~  233 (353)
T PRK10851        227 EPATRFV  233 (353)
T ss_pred             CccchHH
Confidence            7665553

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.3e-42  Score=387.71  Aligned_cols=216  Identities=29%  Similarity=0.541  Sum_probs=184.9

Q ss_pred             EEEEeEEEECCCCCC--ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCC----CCHHH
Q 000856         1010 IELRHVDFAYPSRPD--VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR----LNLKS 1083 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~--~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~----~~~~~ 1083 (1252)
                      |+++||+|+|+....  .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++..    .+...
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   81 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP   81 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence            789999999963211  259999999999999999999999999999999999999999999999999863    34567


Q ss_pred             HhcccEEEcccc--ccCcccHHHHhccCCC--CCCH----HHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1084 LRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATE----AEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1084 lR~~i~~VpQd~--~lf~gTIreNl~~~~~--~~~d----eei~~al~~~~l~-~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      +|++++||+|+|  .+|..|+.+|+.++..  ..+.    +++.++++.+++. ++..           .....||||||
T Consensus        82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~LSgGqk  150 (288)
T PRK13643         82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-----------KSPFELSGGQM  150 (288)
T ss_pred             HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-----------CCcccCCHHHH
Confidence            899999999998  7899999999987632  1222    3355666666763 2322           23457999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSE 1232 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~e 1232 (1252)
                      ||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|||+|||+++.+. .||||++|++|++++.|++++
T Consensus       151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~  230 (288)
T PRK13643        151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD  230 (288)
T ss_pred             HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999999999998875 4889999999999885 599999999999999999999


Q ss_pred             hhcC
Q 000856         1233 LVSR 1236 (1252)
Q Consensus      1233 Ll~~ 1236 (1252)
                      +.++
T Consensus       231 ~~~~  234 (288)
T PRK13643        231 VFQE  234 (288)
T ss_pred             HHcC
Confidence            8753

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=4.1e-42  Score=379.68  Aligned_cols=213  Identities=31%  Similarity=0.556  Sum_probs=181.8

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHH-hccc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLKI 1088 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~l-R~~i 1088 (1252)
                      ++++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |+++
T Consensus         1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (236)
T cd03219           1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI   77 (236)
T ss_pred             CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence            468999999963   359999999999999999999999999999999999999999999999999988876654 5779


Q ss_pred             EEEccccccCcc-cHHHHhccCCCCC------------C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 000856         1089 GLVQQEPALFAA-SIFDNIAYGKEGA------------T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 1151 (1252)
Q Consensus      1089 ~~VpQd~~lf~g-TIreNl~~~~~~~------------~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSg 1151 (1252)
                      +|+||++.+|.+ |++||+.++....            .    .+.+.++++..++.+           ........|||
T Consensus        78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg  146 (236)
T cd03219          78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-----------LADRPAGELSY  146 (236)
T ss_pred             EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-----------hhhCChhhCCH
Confidence            999999999886 9999998653211            0    123344444444432           23334457999


Q ss_pred             hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 000856         1152 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGS 1229 (1252)
Q Consensus      1152 GQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~ 1229 (1252)
                      |||||++|||||+++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus       147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~  226 (236)
T cd03219         147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT  226 (236)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence            99999999999999999999999999999999999999999875 68899999999999865 89999999999999999


Q ss_pred             hhhhhcC
Q 000856         1230 HSELVSR 1236 (1252)
Q Consensus      1230 ~~eLl~~ 1236 (1252)
                      +++++..
T Consensus       227 ~~~~~~~  233 (236)
T cd03219         227 PDEVRNN  233 (236)
T ss_pred             HHHhccC
Confidence            9998754

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.7e-42  Score=381.33  Aligned_cols=224  Identities=33%  Similarity=0.562  Sum_probs=191.5

Q ss_pred             cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCcccCC--C
Q 000856         1007 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--L 1079 (1252)
Q Consensus      1007 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~-----p~~G~I~idG~di~~--~ 1079 (1252)
                      .+.|+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.+||.++..  .
T Consensus        11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~   87 (260)
T PRK10744         11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ   87 (260)
T ss_pred             CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence            356999999999963   359999999999999999999999999999999999986     589999999999853  4


Q ss_pred             CHHHHhcccEEEccccccCcccHHHHhccCCC---CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 000856         1080 NLKSLRLKIGLVQQEPALFAASIFDNIAYGKE---GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 1152 (1252)
Q Consensus      1080 ~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~---~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgG 1152 (1252)
                      +...+|++++|+||++.+|+.|+++|+.++..   ..+    +++++++++.+++.+.+..       .......+||||
T Consensus        88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G  160 (260)
T PRK10744         88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD-------KLHQSGYSLSGG  160 (260)
T ss_pred             chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-------HHhcCCCCCCHH
Confidence            56678999999999999999999999986421   122    2456777888877543322       233445679999


Q ss_pred             HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChh
Q 000856         1153 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHS 1231 (1252)
Q Consensus      1153 QrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~ 1231 (1252)
                      ||||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus       161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~  240 (260)
T PRK10744        161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD  240 (260)
T ss_pred             HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99999999999999999999999999999999999999999877789999999999885 58999999999999999999


Q ss_pred             hhhcCCCch
Q 000856         1232 ELVSRPDGA 1240 (1252)
Q Consensus      1232 eLl~~~~g~ 1240 (1252)
                      ++.+.+...
T Consensus       241 ~~~~~~~~~  249 (260)
T PRK10744        241 TIFTKPAKK  249 (260)
T ss_pred             HHHhCCCcH
Confidence            998754333

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=3.6e-42  Score=379.53  Aligned_cols=218  Identities=33%  Similarity=0.527  Sum_probs=184.0

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCH---HHHhh
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL---RWLRD  441 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~  441 (1252)
                      |+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.   ..+++
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~   77 (235)
T cd03261           1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR   77 (235)
T ss_pred             CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence            478999999963   358999999999999999999999999999999999999999999999999877654   45678


Q ss_pred             hceEEccCCCCchh-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000856          442 QIGLVNQEPALFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA  517 (1252)
Q Consensus       442 ~i~~v~Q~~~l~~~-tv~~ni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARa  517 (1252)
                      .++||+|++.+|+. |++||+.++..   ....++...     .+.+.++.+  |+.........+||||||||++||||
T Consensus        78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a  150 (235)
T cd03261          78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE-----IVLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA  150 (235)
T ss_pred             ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence            89999999999876 99999987532   112222211     112233333  55555667778999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhcc
Q 000856          518 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       518 l~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      |+.+|+++||||||++||+.+++.+.+.|+++.+  |+|+|++||+++.+.. ||+|++|++|++++.|+++++....
T Consensus       151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~  228 (235)
T cd03261         151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASD  228 (235)
T ss_pred             HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCCC
Confidence            9999999999999999999999999999998753  7999999999999876 8999999999999999998876543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=7.1e-42  Score=397.52  Aligned_cols=221  Identities=29%  Similarity=0.513  Sum_probs=195.4

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .++++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+++
T Consensus         3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i   79 (402)
T PRK09536          3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV   79 (402)
T ss_pred             eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence            3899999999963   4699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcccccc-CcccHHHHhccCCC----------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 000856         1089 GLVQQEPAL-FAASIFDNIAYGKE----------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 1157 (1252)
Q Consensus      1089 ~~VpQd~~l-f~gTIreNl~~~~~----------~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1157 (1252)
                      ++|||++.+ |..|++||+.++..          ..+++.+.++++.+++.++...       ++    ..||||||||+
T Consensus        80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-------~~----~~LSgGerQRv  148 (402)
T PRK09536         80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-------PV----TSLSGGERQRV  148 (402)
T ss_pred             EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-------Ch----hhCCHHHHHHH
Confidence            999999987 68899999987531          1124567888999998776543       22    46999999999


Q ss_pred             HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhhhhc
Q 000856         1158 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1158 aLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti-~~~DrI~vl~~G~Ive~G~~~eLl~ 1235 (1252)
                      +|||||+++|+||||||||++||+.+...+++.|+++. +++|||+++|+++.+ +.||||++|++|++++.|++++++.
T Consensus       149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~  228 (402)
T PRK09536        149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT  228 (402)
T ss_pred             HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence            99999999999999999999999999999999999875 478999999999999 5589999999999999999999885


Q ss_pred             CCCchhHHHH
Q 000856         1236 RPDGAYSRLL 1245 (1252)
Q Consensus      1236 ~~~g~y~~l~ 1245 (1252)
                      .  ....+++
T Consensus       229 ~--~~l~~~~  236 (402)
T PRK09536        229 A--DTLRAAF  236 (402)
T ss_pred             c--HHHHHHh
Confidence            4  3444544

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.3e-42  Score=384.21  Aligned_cols=217  Identities=33%  Similarity=0.522  Sum_probs=190.6

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      -|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i   83 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI   83 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence            48999999999743234599999999999999999999999999999999999999999999999999887878889999


Q ss_pred             EEEcccc--ccCcccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 000856         1089 GLVQQEP--ALFAASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 1160 (1252)
Q Consensus      1089 ~~VpQd~--~lf~gTIreNl~~~~~--~~~de----ei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 1160 (1252)
                      +|+||+|  .++..|+.|||.++..  ..+.+    .+.++++.+++.++....           ...||||||||++||
T Consensus        84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~lA  152 (277)
T PRK13642         84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTRE-----------PARLSGGQKQRVAVA  152 (277)
T ss_pred             EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence            9999998  4778899999986421  22333    346777788877654432           246999999999999


Q ss_pred             HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1161 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1161 RALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      |||+++|++|||||||++||+.+...+.+.|+++.+  ++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus       153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  230 (277)
T PRK13642        153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT  230 (277)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            999999999999999999999999999999998753  7899999999999988999999999999999999998864

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.9e-42  Score=387.97  Aligned_cols=216  Identities=30%  Similarity=0.478  Sum_probs=183.4

Q ss_pred             EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCC----CHHH
Q 000856         1010 IELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL----NLKS 1083 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~----~~~~ 1083 (1252)
                      |+++||+++|+...  ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++...    +...
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP   82 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            78999999996322  13699999999999999999999999999999999999999999999999999653    3457


Q ss_pred             HhcccEEEcccc--ccCcccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCC-ccCCCCCCCChhHH
Q 000856         1084 LRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKT-PVGERGVQLSGGQK 1154 (1252)
Q Consensus      1084 lR~~i~~VpQd~--~lf~gTIreNl~~~~~--~~~de----ei~~al~~~~l~~~i~~lp~gldt-~vge~G~~LSgGQr 1154 (1252)
                      +|++|+||||+|  .+|..|++||+.++..  ..+.+    .+.++++.+++           ++ .......+||||||
T Consensus        83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~~LSgGq~  151 (286)
T PRK13646         83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGF-----------SRDVMSQSPFQMSGGQM  151 (286)
T ss_pred             HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCC-----------ChhhhhCCcccCCHHHH
Confidence            899999999998  5888999999987532  22333    23344444444           32 12344568999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHS 1231 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~ 1231 (1252)
                      ||++|||||+.+|+||||||||++||+.+...+.+.|+++.  .++|||+|||+++.+. .||||++|++|+|++.|+++
T Consensus       152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~  231 (286)
T PRK13646        152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK  231 (286)
T ss_pred             HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            99999999999999999999999999999999999999874  4799999999999885 58999999999999999999


Q ss_pred             hhhcC
Q 000856         1232 ELVSR 1236 (1252)
Q Consensus      1232 eLl~~ 1236 (1252)
                      +++++
T Consensus       232 ~~~~~  236 (286)
T PRK13646        232 ELFKD  236 (286)
T ss_pred             HHHhC
Confidence            98764

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=6.9e-42  Score=394.65  Aligned_cols=219  Identities=33%  Similarity=0.538  Sum_probs=192.2

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC--ceEEECCcccCCCCHHHHh
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA--GKVMIDGKDIRRLNLKSLR 1085 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~--G~I~idG~di~~~~~~~lR 1085 (1252)
                      +.|+++||+++|++   .++|+|+||+|++||.++|+||||||||||+++|+|+++|++  |+|.+||.++.+.++  .+
T Consensus         4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~   78 (362)
T TIGR03258         4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK   78 (362)
T ss_pred             eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence            57999999999963   359999999999999999999999999999999999999999  999999999987665  35


Q ss_pred             cccEEEccccccCcc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 000856         1086 LKIGLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 1158 (1252)
Q Consensus      1086 ~~i~~VpQd~~lf~g-TIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1158 (1252)
                      ++++||+|++.+|.. |++||+.++..  ..+    ++.+.++++..++.++....|           ..||||||||++
T Consensus        79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRva  147 (362)
T TIGR03258        79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIA  147 (362)
T ss_pred             CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHH
Confidence            789999999999965 99999987532  122    245667788888877665554           479999999999


Q ss_pred             HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC---CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhh
Q 000856         1159 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR---GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1159 LARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~---~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      |||||+++|++|+||||||+||+.+...+++.|+++.+   +.|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus       148 LARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~  227 (362)
T TIGR03258       148 IARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALY  227 (362)
T ss_pred             HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            99999999999999999999999999999999988753   689999999999875 58999999999999999999999


Q ss_pred             cCCCchhH
Q 000856         1235 SRPDGAYS 1242 (1252)
Q Consensus      1235 ~~~~g~y~ 1242 (1252)
                      +++...|.
T Consensus       228 ~~p~~~~~  235 (362)
T TIGR03258       228 DAPADGFA  235 (362)
T ss_pred             hCcCcHHH
Confidence            88765553

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=6e-42  Score=379.84  Aligned_cols=212  Identities=35%  Similarity=0.579  Sum_probs=183.1

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCC---HHHHhc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSLRL 1086 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~---~~~lR~ 1086 (1252)
                      ++++||+++|++  +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+   ...+|+
T Consensus         1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   78 (241)
T cd03256           1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR   78 (241)
T ss_pred             CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence            478999999963  146999999999999999999999999999999999999999999999999998876   456788


Q ss_pred             ccEEEccccccCc-ccHHHHhccCCC--------------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 000856         1087 KIGLVQQEPALFA-ASIFDNIAYGKE--------------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 1151 (1252)
Q Consensus      1087 ~i~~VpQd~~lf~-gTIreNl~~~~~--------------~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSg 1151 (1252)
                      +++|+||++.+|. .|+++|+.++..              ...++++.++++..++.+..           ...+..|||
T Consensus        79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~  147 (241)
T cd03256          79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----------YQRADQLSG  147 (241)
T ss_pred             ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----------CCCcccCCH
Confidence            9999999998886 699999976421              11233456666666665432           233457999


Q ss_pred             hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEec
Q 000856         1152 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1152 GQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G 1228 (1252)
                      |||||++|||||+++|+||||||||++||+.+...+.+.|++..  .++|||+|||+++.+. .||+|++|++|++++.|
T Consensus       148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~  227 (241)
T cd03256         148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG  227 (241)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence            99999999999999999999999999999999999999999875  3799999999999987 58999999999999999


Q ss_pred             Chhhhh
Q 000856         1229 SHSELV 1234 (1252)
Q Consensus      1229 ~~~eLl 1234 (1252)
                      +++++.
T Consensus       228 ~~~~~~  233 (241)
T cd03256         228 PPAELT  233 (241)
T ss_pred             CHHHhh
Confidence            999874

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=4.3e-42  Score=375.27  Aligned_cols=211  Identities=27%  Similarity=0.473  Sum_probs=181.8

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++||+++|++. ..++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++... ...+|++++
T Consensus         1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~   78 (220)
T cd03263           1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG   78 (220)
T ss_pred             CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence            5789999999632 14699999999999999999999999999999999999999999999999998764 356788999


Q ss_pred             EEccccccC-cccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPALF-AASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~lf-~gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      |+||++.+| ..|+++|+.++..  ..+    ++++.++++..++.+..       ++.+    ..||||||||++||||
T Consensus        79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LS~G~~qrv~la~a  147 (220)
T cd03263          79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NKRA----RTLSGGMKRKLSLAIA  147 (220)
T ss_pred             EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hChh----hhCCHHHHHHHHHHHH
Confidence            999999988 6799999976321  112    23456677777765443       2333    4699999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ++++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence            99999999999999999999999999999998777999999999999865 899999999999999998875

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=3.2e-42  Score=374.92  Aligned_cols=203  Identities=34%  Similarity=0.568  Sum_probs=176.3

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHH---HHhc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLRL 1086 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~---~lR~ 1086 (1252)
                      |+++|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+..   .+|+
T Consensus         2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (216)
T TIGR00960         2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR   80 (216)
T ss_pred             eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence            7899999999632 23599999999999999999999999999999999999999999999999999776543   4788


Q ss_pred             ccEEEccccccCc-ccHHHHhccCCC------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 000856         1087 KIGLVQQEPALFA-ASIFDNIAYGKE------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 1159 (1252)
Q Consensus      1087 ~i~~VpQd~~lf~-gTIreNl~~~~~------~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 1159 (1252)
                      +++|+||++.+|. .|++||+.++..      ...++++.++++..++.++....|           ..||||||||++|
T Consensus        81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l  149 (216)
T TIGR00960        81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI  149 (216)
T ss_pred             hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence            9999999999886 599999986411      112456778888888876655443           3699999999999


Q ss_pred             HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEE
Q 000856         1160 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRI 1224 (1252)
Q Consensus      1160 ARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~I 1224 (1252)
                      ||||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus       150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999999999999999999999999999999874 47899999999999865 899999999985

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.7e-42  Score=396.25  Aligned_cols=217  Identities=27%  Similarity=0.430  Sum_probs=184.7

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++++|++  +..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.+.+..  +++|
T Consensus         3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i   78 (356)
T PRK11650          3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI   78 (356)
T ss_pred             EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence            3899999999942  24589999999999999999999999999999999999999999999999999877654  3689


Q ss_pred             eEEccCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000856          444 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~  520 (1252)
                      +||+|++.+|+. ||+||+.|+...  ....+...     .+.+.++.+  |++...++.+.+|||||||||+|||||+.
T Consensus        79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~QRvalARAL~~  151 (356)
T PRK11650         79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE-----RVAEAARIL--ELEPLLDRKPRELSGGQRQRVAMGRAIVR  151 (356)
T ss_pred             EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence            999999999965 999999987431  12122111     112333333  56666677778999999999999999999


Q ss_pred             CCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       521 ~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +|++||||||||+||+.+++.+.+.|+++.+  |.|+|+|||+++++.. ||+|++|++|++++.|+++++.++
T Consensus       152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~  225 (356)
T PRK11650        152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK  225 (356)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence            9999999999999999999999999998753  8999999999998865 899999999999999999998765

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=7.5e-42  Score=376.66  Aligned_cols=216  Identities=37%  Similarity=0.589  Sum_probs=185.9

Q ss_pred             EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHH---HHh
Q 000856         1010 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLR 1085 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~---~lR 1085 (1252)
                      |+++|++++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..   .+|
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR   81 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence            78999999996421 12699999999999999999999999999999999999999999999999999877654   357


Q ss_pred             cccEEEccccccCc-ccHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 000856         1086 LKIGLVQQEPALFA-ASIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 1158 (1252)
Q Consensus      1086 ~~i~~VpQd~~lf~-gTIreNl~~~~~--~~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1158 (1252)
                      +.++|+||++.+|. .|++||+.++..  ..    ..+++.++++..++.+.....           ...||||||||++
T Consensus        82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~  150 (233)
T cd03258          82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAY-----------PAQLSGGQKQRVG  150 (233)
T ss_pred             hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcC-----------hhhCCHHHHHHHH
Confidence            88999999999986 699999976421  11    234567777777776554433           2579999999999


Q ss_pred             HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhc
Q 000856         1159 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM-R-GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1159 LARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~ 1235 (1252)
                      ||||++++|++|||||||++||+.+...+.+.|++.. + ++|+|++||+++.+.. ||++++|++|++++.|+++++++
T Consensus       151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (233)
T cd03258         151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA  230 (233)
T ss_pred             HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence            9999999999999999999999999999999999875 3 7899999999999865 89999999999999999998875


Q ss_pred             C
Q 000856         1236 R 1236 (1252)
Q Consensus      1236 ~ 1236 (1252)
                      .
T Consensus       231 ~  231 (233)
T cd03258         231 N  231 (233)
T ss_pred             C
Confidence            4

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.9e-42  Score=381.19  Aligned_cols=225  Identities=31%  Similarity=0.478  Sum_probs=189.9

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCcccC--CCCH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIR--RLNL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-----~~G~I~idG~di~--~~~~ 1081 (1252)
                      .|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.+||.++.  +.+.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   80 (253)
T PRK14267          4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP   80 (253)
T ss_pred             eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence            4899999999963   3599999999999999999999999999999999999987     4999999999987  4556


Q ss_pred             HHHhcccEEEccccccCcc-cHHHHhccCCC--C--CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 000856         1082 KSLRLKIGLVQQEPALFAA-SIFDNIAYGKE--G--AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 1152 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~g-TIreNl~~~~~--~--~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgG 1152 (1252)
                      ..+|++++|+||++.+|.+ |++||+.++..  .  ..    ++++.++++..++.+.+..   .+    ......||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~----~~~~~~LS~G  153 (253)
T PRK14267         81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD---RL----NDYPSNLSGG  153 (253)
T ss_pred             HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh---hh----ccChhhCCHH
Confidence            6788999999999999975 99999986421  1  11    2346677777776544321   12    3344579999


Q ss_pred             HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 000856         1153 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 1231 (1252)
Q Consensus      1153 QrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~ 1231 (1252)
                      ||||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus       154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~  233 (253)
T PRK14267        154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR  233 (253)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999999998767999999999999764 8999999999999999999


Q ss_pred             hhhcCCCchhHH
Q 000856         1232 ELVSRPDGAYSR 1243 (1252)
Q Consensus      1232 eLl~~~~g~y~~ 1243 (1252)
                      ++++.+...|.+
T Consensus       234 ~~~~~~~~~~~~  245 (253)
T PRK14267        234 KVFENPEHELTE  245 (253)
T ss_pred             HHHhCCCcHHHH
Confidence            998654333433

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=1.3e-41  Score=393.73  Aligned_cols=218  Identities=38%  Similarity=0.602  Sum_probs=193.1

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .++++|++++|++   .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+.++.  ++++
T Consensus        14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i   88 (375)
T PRK09452         14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV   88 (375)
T ss_pred             eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence            5999999999963   3589999999999999999999999999999999999999999999999999887764  4789


Q ss_pred             EEEccccccCcc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 000856         1089 GLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161 (1252)
Q Consensus      1089 ~~VpQd~~lf~g-TIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 1161 (1252)
                      +||+|++.+|.. |++|||.++..  ..+    ++++.++++..++.++....|           ..||||||||++|||
T Consensus        89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR  157 (375)
T PRK09452         89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR  157 (375)
T ss_pred             EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence            999999999965 99999987632  122    345677888888887776655           469999999999999


Q ss_pred             HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcCCC
Q 000856         1162 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 1238 (1252)
Q Consensus      1162 ALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~~~ 1238 (1252)
                      ||+++|++||||||||+||..+...+.+.|+++.+  +.|+|+|||+++.+. .||+|++|++|+|++.|+|+++++++.
T Consensus       158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~  237 (375)
T PRK09452        158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK  237 (375)
T ss_pred             HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence            99999999999999999999999999999998753  789999999999875 589999999999999999999998876


Q ss_pred             chhH
Q 000856         1239 GAYS 1242 (1252)
Q Consensus      1239 g~y~ 1242 (1252)
                      ..|.
T Consensus       238 ~~~~  241 (375)
T PRK09452        238 NLFV  241 (375)
T ss_pred             cHHH
Confidence            5553

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=1e-41  Score=390.11  Aligned_cols=224  Identities=27%  Similarity=0.409  Sum_probs=189.4

Q ss_pred             cEEEEeEEEECCCCC----------CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCC
Q 000856         1009 EIELRHVDFAYPSRP----------DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR 1078 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~----------~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~ 1078 (1252)
                      -++++|++++|+.+.          ..++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.|+.+
T Consensus         8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~   87 (331)
T PRK15079          8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG   87 (331)
T ss_pred             eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence            489999999996321          2469999999999999999999999999999999999999999999999999998


Q ss_pred             CCHH---HHhcccEEEcccc--ccC-cccHHHHhccCC----CCCCHH----HHHHHHHHcCchh-hHhhCCCcCCCccC
Q 000856         1079 LNLK---SLRLKIGLVQQEP--ALF-AASIFDNIAYGK----EGATEA----EVVEAARAANVHG-FVSALPNAYKTPVG 1143 (1252)
Q Consensus      1079 ~~~~---~lR~~i~~VpQd~--~lf-~gTIreNl~~~~----~~~~de----ei~~al~~~~l~~-~i~~lp~gldt~vg 1143 (1252)
                      ++..   .+|++++||+|+|  .++ ..|+.+|+.++.    +..+.+    .+.++++.+++.+ ...           
T Consensus        88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~-----------  156 (331)
T PRK15079         88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLIN-----------  156 (331)
T ss_pred             CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhc-----------
Confidence            8754   3678999999998  466 579999986421    123333    3455666666632 222           


Q ss_pred             CCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEe
Q 000856         1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQ 1220 (1252)
Q Consensus      1144 e~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~ 1220 (1252)
                      .....||||||||++|||||+.+|++||+||||++||..+...+.+.|+++.+  +.|+|+|||+++.+.. ||||+||+
T Consensus       157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~  236 (331)
T PRK15079        157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY  236 (331)
T ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            23357999999999999999999999999999999999999999999998753  7899999999999975 89999999


Q ss_pred             CCEEEEecChhhhhcCCCchhHH
Q 000856         1221 DGRIVEQGSHSELVSRPDGAYSR 1243 (1252)
Q Consensus      1221 ~G~Ive~G~~~eLl~~~~g~y~~ 1243 (1252)
                      +|+|+|.|+++++++++...|.+
T Consensus       237 ~G~ive~g~~~~i~~~~~~py~~  259 (331)
T PRK15079        237 LGHAVELGTYDEVYHNPLHPYTK  259 (331)
T ss_pred             CCEEEEEcCHHHHHcCCCCHHHH
Confidence            99999999999999876666765

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=6.3e-42  Score=383.89  Aligned_cols=219  Identities=37%  Similarity=0.588  Sum_probs=187.3

Q ss_pred             EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHH----hc
Q 000856         1011 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL----RL 1086 (1252)
Q Consensus      1011 ~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~l----R~ 1086 (1252)
                      .++|++++|.+   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+    ++
T Consensus        26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~  102 (269)
T cd03294          26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK  102 (269)
T ss_pred             hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence            45677777742   358999999999999999999999999999999999999999999999999987765543    46


Q ss_pred             ccEEEccccccC-cccHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 000856         1087 KIGLVQQEPALF-AASIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 1159 (1252)
Q Consensus      1087 ~i~~VpQd~~lf-~gTIreNl~~~~~--~~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 1159 (1252)
                      +++|+||++.+| ..|++||+.++..  ..    .++++.++++.+++.++....|           .+||||||||++|
T Consensus       103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l  171 (269)
T cd03294         103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL  171 (269)
T ss_pred             cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence            899999999888 4699999976421  11    2345677888888877665544           3699999999999


Q ss_pred             HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1160 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1160 ARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      ||||+++|+||||||||++||+.+...+.+.|++..  .++|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus       172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  251 (269)
T cd03294         172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN  251 (269)
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence            999999999999999999999999999999999875  3789999999999875 5899999999999999999999876


Q ss_pred             CCchhHH
Q 000856         1237 PDGAYSR 1243 (1252)
Q Consensus      1237 ~~g~y~~ 1243 (1252)
                      +...|.+
T Consensus       252 ~~~~~~~  258 (269)
T cd03294         252 PANDYVR  258 (269)
T ss_pred             cCcHHHH
Confidence            5555544

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-41  Score=378.33  Aligned_cols=226  Identities=33%  Similarity=0.505  Sum_probs=193.3

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCcccCCCCHHH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRLNLKS 1083 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-----~~G~I~idG~di~~~~~~~ 1083 (1252)
                      .++++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|.|+++|     ++|+|.+||.++.+.+...
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   79 (250)
T PRK14247          3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE   79 (250)
T ss_pred             eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence            4899999999963   3599999999999999999999999999999999999974     6999999999998888888


Q ss_pred             HhcccEEEccccccC-cccHHHHhccCCC--C------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1084 LRLKIGLVQQEPALF-AASIFDNIAYGKE--G------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1084 lR~~i~~VpQd~~lf-~gTIreNl~~~~~--~------~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      +|++++|+||++.+| ..|++||+.++..  .      ..++++.++++.+++.+.+.   ..++..+    .+||||||
T Consensus        80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~~----~~LSgG~~  152 (250)
T PRK14247         80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK---DRLDAPA----GKLSGGQQ  152 (250)
T ss_pred             HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh---hhhcCCc----ccCCHHHH
Confidence            999999999999754 6899999976421  1      11345678888888765432   2234444    46999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||++|||||+++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus       153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (250)
T PRK14247        153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV  232 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence            999999999999999999999999999999999999999877899999999999885 5899999999999999999999


Q ss_pred             hcCCCchhHHH
Q 000856         1234 VSRPDGAYSRL 1244 (1252)
Q Consensus      1234 l~~~~g~y~~l 1244 (1252)
                      .+.+...+.+.
T Consensus       233 ~~~~~~~~~~~  243 (250)
T PRK14247        233 FTNPRHELTEK  243 (250)
T ss_pred             HcCCccHHHHH
Confidence            87654445433

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.8e-42  Score=394.19  Aligned_cols=216  Identities=30%  Similarity=0.473  Sum_probs=184.7

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+..  +++|
T Consensus         6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i   80 (351)
T PRK11432          6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI   80 (351)
T ss_pred             EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence            5899999999963   3589999999999999999999999999999999999999999999999999876543  4689


Q ss_pred             eEEccCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000856          444 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~  520 (1252)
                      +||+|++.+|+. ||+||+.|+...  ....+..+     .+.+.++.+  |+.....+.+.+|||||||||+|||||+.
T Consensus        81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~~--gl~~~~~r~~~~LSgGq~QRVaLARaL~~  153 (351)
T PRK11432         81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQ-----RVKEALELV--DLAGFEDRYVDQISGGQQQRVALARALIL  153 (351)
T ss_pred             EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence            999999999976 999999987431  12222211     112233333  55555677788999999999999999999


Q ss_pred             CCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       521 ~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +|++||||||||+||+.+++.+.+.|+++.+  |+|+|+|||+++++.. ||+|++|++|++++.|+++++..+
T Consensus       154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~  227 (351)
T PRK11432        154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ  227 (351)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999999999998853  8999999999999865 899999999999999999998765

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-41  Score=380.26  Aligned_cols=223  Identities=33%  Similarity=0.547  Sum_probs=190.9

Q ss_pred             cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCcccCC--C
Q 000856         1007 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--L 1079 (1252)
Q Consensus      1007 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-----~~G~I~idG~di~~--~ 1079 (1252)
                      .+.|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|++||.++..  .
T Consensus        17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~   93 (267)
T PRK14235         17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL   93 (267)
T ss_pred             CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence            357999999999963   3699999999999999999999999999999999999975     89999999999865  3


Q ss_pred             CHHHHhcccEEEccccccCcccHHHHhccCCC--C-----C-CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 000856         1080 NLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----A-TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 1151 (1252)
Q Consensus      1080 ~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~-----~-~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSg 1151 (1252)
                      +...+|++++|+||++.+|..|++||+.++..  .     . .++++.++++.+++.+.+..       ........|||
T Consensus        94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSg  166 (267)
T PRK14235         94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTGLSG  166 (267)
T ss_pred             chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCH
Confidence            56678899999999999998999999986421  1     1 13456778888887654321       12234457999


Q ss_pred             hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecCh
Q 000856         1152 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSH 1230 (1252)
Q Consensus      1152 GQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~ 1230 (1252)
                      |||||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||++++|++|++++.|++
T Consensus       167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~  246 (267)
T PRK14235        167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT  246 (267)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence            999999999999999999999999999999999999999998876789999999999985 4799999999999999999


Q ss_pred             hhhhcCCCc
Q 000856         1231 SELVSRPDG 1239 (1252)
Q Consensus      1231 ~eLl~~~~g 1239 (1252)
                      ++++..+..
T Consensus       247 ~~~~~~~~~  255 (267)
T PRK14235        247 EKMFTNPDD  255 (267)
T ss_pred             HHHHhCCCC
Confidence            999865433

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=1.2e-41  Score=376.80  Aligned_cols=219  Identities=35%  Similarity=0.563  Sum_probs=187.1

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      ++++||+++|++.  .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus         1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   78 (242)
T cd03295           1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG   78 (242)
T ss_pred             CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence            4789999999631  35999999999999999999999999999999999999999999999999998888888889999


Q ss_pred             EEccccccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchh--hHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 000856         1090 LVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHG--FVSALPNAYKTPVGERGVQLSGGQKQRIAIA 1160 (1252)
Q Consensus      1090 ~VpQd~~lf~-gTIreNl~~~~~--~~~----deei~~al~~~~l~~--~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 1160 (1252)
                      |+||++.+|. .|++||+.++..  ..+    ++++.++++..++.+  +.           .....+||||||||++||
T Consensus        79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-----------~~~~~~LS~G~~qrv~la  147 (242)
T cd03295          79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFA-----------DRYPHELSGGQQQRVGVA  147 (242)
T ss_pred             EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHH-----------hcChhhCCHHHHHHHHHH
Confidence            9999999885 699999976421  112    234566666666643  22           233467999999999999


Q ss_pred             HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcCC
Q 000856         1161 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRP 1237 (1252)
Q Consensus      1161 RALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~~ 1237 (1252)
                      ||++++|++|||||||++||+.+...+.+.|++..+  ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.+
T Consensus       148 ral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~  227 (242)
T cd03295         148 RALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP  227 (242)
T ss_pred             HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCC
Confidence            999999999999999999999999999999998753  799999999999875 58999999999999999999997653


Q ss_pred             Cchh
Q 000856         1238 DGAY 1241 (1252)
Q Consensus      1238 ~g~y 1241 (1252)
                      ...+
T Consensus       228 ~~~~  231 (242)
T cd03295         228 ANDF  231 (242)
T ss_pred             CChH
Confidence            3333

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.3e-42  Score=386.14  Aligned_cols=217  Identities=32%  Similarity=0.512  Sum_probs=184.3

Q ss_pred             EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCC----CCHHH
Q 000856         1010 IELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR----LNLKS 1083 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~----~~~~~ 1083 (1252)
                      ++++||+++|+...  ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++..    .+...
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP   82 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            78999999996321  1369999999999999999999999999999999999999999999999999863    34567


Q ss_pred             HhcccEEEcccc--ccCcccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 000856         1084 LRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 1155 (1252)
Q Consensus      1084 lR~~i~~VpQd~--~lf~gTIreNl~~~~~--~~~de----ei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1155 (1252)
                      .|++++||||+|  .+|..|++||+.++..  ..+.+    .+.++++.+++.+.+      .+    .....|||||||
T Consensus        83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~------~~----~~~~~LSgGq~q  152 (290)
T PRK13634         83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL------LA----RSPFELSGGQMR  152 (290)
T ss_pred             HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh------hh----CCcccCCHHHHH
Confidence            888999999998  6888999999987532  22332    345566666664221      12    234579999999


Q ss_pred             HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhh
Q 000856         1156 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSE 1232 (1252)
Q Consensus      1156 rlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~e 1232 (1252)
                      |++|||||+.+|++|||||||++||+.+...+.+.|++..+  +.|||+|||+++.+. .||||++|++|++++.|++++
T Consensus       153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~  232 (290)
T PRK13634        153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE  232 (290)
T ss_pred             HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence            99999999999999999999999999999999999998753  789999999999885 589999999999999999999


Q ss_pred             hhcC
Q 000856         1233 LVSR 1236 (1252)
Q Consensus      1233 Ll~~ 1236 (1252)
                      +.+.
T Consensus       233 ~~~~  236 (290)
T PRK13634        233 IFAD  236 (290)
T ss_pred             HhcC
Confidence            8754

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=8.9e-42  Score=373.50  Aligned_cols=213  Identities=28%  Similarity=0.447  Sum_probs=179.1

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHH-hccc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLKI 1088 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~l-R~~i 1088 (1252)
                      |+++||+++|++   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.... |+++
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (222)
T cd03224           1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI   77 (222)
T ss_pred             CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence            578999999963   369999999999999999999999999999999999999999999999999988776654 6789


Q ss_pred             EEEccccccCcc-cHHHHhccCCCCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHH
Q 000856         1089 GLVQQEPALFAA-SIFDNIAYGKEGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 1163 (1252)
Q Consensus      1089 ~~VpQd~~lf~g-TIreNl~~~~~~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARAL 1163 (1252)
                      +|+||++.+|.+ |+++|+.++.....    .+++.++++..      ..++..+++    ....||||||||++||||+
T Consensus        78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l~~~~~~----~~~~LS~G~~qrv~laral  147 (222)
T cd03224          78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRLKERRKQ----LAGTLSGGEQQMLAIARAL  147 (222)
T ss_pred             EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------HhhhhhhhC----chhhCCHHHHHHHHHHHHH
Confidence            999999999886 99999987533221    11222333332      112223333    3456999999999999999


Q ss_pred             ccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhc
Q 000856         1164 LKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1164 l~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~ 1235 (1252)
                      +++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  221 (222)
T cd03224         148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA  221 (222)
T ss_pred             hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence            99999999999999999999999999999875 57899999999998755 89999999999999999988763

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.3e-42  Score=362.74  Aligned_cols=217  Identities=36%  Similarity=0.591  Sum_probs=190.8

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCc---ccCCCCHHHHh
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK---DIRRLNLKSLR 1085 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~---di~~~~~~~lR 1085 (1252)
                      .|+++|++..|+.   .++++|||++|+.||.+|+.||||||||||+++|.|+..|++|+|.+||.   |.++...  -.
T Consensus         2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~--~~   76 (345)
T COG1118           2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAV--RD   76 (345)
T ss_pred             ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccch--hh
Confidence            3788899988863   35899999999999999999999999999999999999999999999999   7777443  34


Q ss_pred             cccEEEccccccC-cccHHHHhccCCC--------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 000856         1086 LKIGLVQQEPALF-AASIFDNIAYGKE--------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 1156 (1252)
Q Consensus      1086 ~~i~~VpQd~~lf-~gTIreNl~~~~~--------~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1156 (1252)
                      ++||+|+||..+| ..||++||+||..        ......+.+.|+.+++..+-+..|           ..||||||||
T Consensus        77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR  145 (345)
T COG1118          77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR  145 (345)
T ss_pred             cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence            6799999999887 6799999999852        123456677788888877766666           5799999999


Q ss_pred             HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhhh
Q 000856         1157 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-R-GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1157 laLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~-~~TvI~IaHrl~ti-~~~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      +||||||..+|++|+||||.++||+.-...+.+-|++.. + ++|+++|||+.+.+ +-||||+||++|+|...|+|+|.
T Consensus       146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev  225 (345)
T COG1118         146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV  225 (345)
T ss_pred             HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence            999999999999999999999999999999999998875 3 89999999999877 56899999999999999999999


Q ss_pred             hcCCCchh
Q 000856         1234 VSRPDGAY 1241 (1252)
Q Consensus      1234 l~~~~g~y 1241 (1252)
                      ...|++.|
T Consensus       226 ~~~P~s~f  233 (345)
T COG1118         226 YDHPASRF  233 (345)
T ss_pred             hcCCCccc
Confidence            98887765

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=5.2e-42  Score=372.46  Aligned_cols=203  Identities=39%  Similarity=0.644  Sum_probs=175.0

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      ++++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+.  .+++++
T Consensus         1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~   75 (213)
T cd03259           1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG   75 (213)
T ss_pred             CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence            478999999963   369999999999999999999999999999999999999999999999999876543  567899


Q ss_pred             EEccccccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~lf~-gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      |+||++.+|. .|++||+.++..  ..+    ++++.++++..++.++....|           .+||||||||++||||
T Consensus        76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~a  144 (213)
T cd03259          76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HELSGGQQQRVALARA  144 (213)
T ss_pred             EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHHHHHHH
Confidence            9999998885 699999986422  111    244667777777765544332           4699999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1228 (1252)
                      |+++|++|||||||++||+.+...+.+.|++..  .++|||++||+++.+.. ||+|++|++|++++.|
T Consensus       145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            999999999999999999999999999999875  37899999999998754 8999999999998865

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=7.1e-41  Score=374.36  Aligned_cols=220  Identities=30%  Similarity=0.457  Sum_probs=195.7

Q ss_pred             ccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHh
Q 000856         1006 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 1085 (1252)
Q Consensus      1006 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR 1085 (1252)
                      ..+.|+++|+++..     .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||            
T Consensus        36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------   98 (282)
T cd03291          36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------   98 (282)
T ss_pred             CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------
Confidence            34579999999852     3599999999999999999999999999999999999999999999998            


Q ss_pred             cccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 000856         1086 LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 1165 (1252)
Q Consensus      1086 ~~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 1165 (1252)
                       +++|+||++.+|++|++||+.++.. ..+.++.++++.+++.+.+..+|.++++.+++.+..||||||||++|||||++
T Consensus        99 -~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~  176 (282)
T cd03291          99 -RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK  176 (282)
T ss_pred             -EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence             3999999999999999999987532 34456677788889999999999999999998899999999999999999999


Q ss_pred             CCCEEEEeccCCCCCHHHHHHHHHHH-HHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcCCCchhHHH
Q 000856         1166 NPAILLLDEATSALDAESECVLQEAL-ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 1244 (1252)
Q Consensus      1166 ~p~ILiLDEpTS~LD~~te~~i~~~l-~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~l 1244 (1252)
                      +|++|||||||++||+.+...+.+.+ ++..+++|||+|||+++.+..||+|++|++|++++.|+++++.+. ...|.+.
T Consensus       177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~  255 (282)
T cd03291         177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSSK  255 (282)
T ss_pred             CCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHHH
Confidence            99999999999999999999998754 555568999999999999988999999999999999999999864 4455544


Q ss_pred             H
Q 000856         1245 L 1245 (1252)
Q Consensus      1245 ~ 1245 (1252)
                      +
T Consensus       256 ~  256 (282)
T cd03291         256 L  256 (282)
T ss_pred             H
Confidence            3

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-41  Score=374.24  Aligned_cols=210  Identities=29%  Similarity=0.461  Sum_probs=179.9

Q ss_pred             cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHH---H
Q 000856         1009 EIELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---L 1084 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~---l 1084 (1252)
                      -++++||+++|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||.++...+...   +
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   84 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL   84 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence            389999999996421 146999999999999999999999999999999999999999999999999998887654   3


Q ss_pred             h-cccEEEccccccCcc-cHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 000856         1085 R-LKIGLVQQEPALFAA-SIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 1156 (1252)
Q Consensus      1085 R-~~i~~VpQd~~lf~g-TIreNl~~~~~--~~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1156 (1252)
                      | +.++|+||++.+|.. |++||+.++..  ..    .++++.++++..++.++...           ...+||||||||
T Consensus        85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgG~~qr  153 (233)
T PRK11629         85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH-----------RPSELSGGERQR  153 (233)
T ss_pred             HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHH
Confidence            3 679999999998875 99999976311  11    22456677777776554332           235799999999


Q ss_pred             HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEEEecC
Q 000856         1157 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 1229 (1252)
Q Consensus      1157 laLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~ 1229 (1252)
                      ++||||++++|+||||||||++||+.+...+.+.|++..  +++|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus       154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS  228 (233)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence            999999999999999999999999999999999999874  4789999999999999899999999999998775

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-41  Score=383.67  Aligned_cols=215  Identities=28%  Similarity=0.545  Sum_probs=186.5

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccC--CCCHHHHhc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSLRL 1086 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~--~~~~~~lR~ 1086 (1252)
                      -|+++||+++|+.  +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.  ..+...+|+
T Consensus         5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~   82 (283)
T PRK13636          5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE   82 (283)
T ss_pred             eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence            4899999999952  236999999999999999999999999999999999999999999999999984  344667889


Q ss_pred             ccEEEcccc--ccCcccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 000856         1087 KIGLVQQEP--ALFAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 1158 (1252)
Q Consensus      1087 ~i~~VpQd~--~lf~gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1158 (1252)
                      +++|+||+|  .+|+.|++||+.++..  ..+    ++.+.++++..++.++..           ....+||||||||++
T Consensus        83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl~  151 (283)
T PRK13636         83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVA  151 (283)
T ss_pred             hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHHH
Confidence            999999998  5788999999986421  122    234566777777765432           234579999999999


Q ss_pred             HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhc
Q 000856         1159 IARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1159 LARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~ 1235 (1252)
                      |||||+.+|+||||||||++||+.+...+.+.|++..+  ++|||++||+++.+. .||||++|++|++++.|+++++++
T Consensus       152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  231 (283)
T PRK13636        152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA  231 (283)
T ss_pred             HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence            99999999999999999999999999999999998753  799999999999986 599999999999999999999876


Q ss_pred             C
Q 000856         1236 R 1236 (1252)
Q Consensus      1236 ~ 1236 (1252)
                      .
T Consensus       232 ~  232 (283)
T PRK13636        232 E  232 (283)
T ss_pred             C
Confidence            4

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-41  Score=384.95  Aligned_cols=216  Identities=25%  Similarity=0.471  Sum_probs=183.9

Q ss_pred             EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCC---------
Q 000856         1010 IELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR--------- 1078 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~--------- 1078 (1252)
                      |+++||+++|++..  ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++..         
T Consensus         3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (305)
T PRK13651          3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK   82 (305)
T ss_pred             EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence            88999999996431  1259999999999999999999999999999999999999999999999887632         


Q ss_pred             ---------------CCHHHHhcccEEEcccc--ccCcccHHHHhccCCC--CCCH----HHHHHHHHHcCch-hhHhhC
Q 000856         1079 ---------------LNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATE----AEVVEAARAANVH-GFVSAL 1134 (1252)
Q Consensus      1079 ---------------~~~~~lR~~i~~VpQd~--~lf~gTIreNl~~~~~--~~~d----eei~~al~~~~l~-~~i~~l 1134 (1252)
                                     .+...+|++++||||+|  .+|..|++|||.++..  ..+.    +++.++++.+++. ++.+  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~--  160 (305)
T PRK13651         83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ--  160 (305)
T ss_pred             cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh--
Confidence                           13457889999999986  6888999999987632  2232    3456677777764 3332  


Q ss_pred             CCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhh-hc
Q 000856         1135 PNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTI-RG 1212 (1252)
Q Consensus      1135 p~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti-~~ 1212 (1252)
                               .....||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|||+|||+++.+ ..
T Consensus       161 ---------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~  231 (305)
T PRK13651        161 ---------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW  231 (305)
T ss_pred             ---------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence                     2345799999999999999999999999999999999999999999998875 489999999999987 55


Q ss_pred             cCEEEEEeCCEEEEecChhhhhcC
Q 000856         1213 VDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1213 ~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      ||||++|++|++++.|+++++.++
T Consensus       232 adrv~vl~~G~i~~~g~~~~~~~~  255 (305)
T PRK13651        232 TKRTIFFKDGKIIKDGDTYDILSD  255 (305)
T ss_pred             CCEEEEEECCEEEEECCHHHHhcC
Confidence            899999999999999999998765

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-41  Score=394.94  Aligned_cols=218  Identities=34%  Similarity=0.540  Sum_probs=189.4

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .|+++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+..  ++++
T Consensus         3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i   77 (369)
T PRK11000          3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV   77 (369)
T ss_pred             EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence            4899999999963   3599999999999999999999999999999999999999999999999999876653  5689


Q ss_pred             EEEccccccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 000856         1089 GLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161 (1252)
Q Consensus      1089 ~~VpQd~~lf~-gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 1161 (1252)
                      +||||++.+|. .|++||+.++..  ..+    ++++.++++..++.++....|           ..||||||||++|||
T Consensus        78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAr  146 (369)
T PRK11000         78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR  146 (369)
T ss_pred             EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHH
Confidence            99999999996 599999987532  122    245677788888766554433           469999999999999


Q ss_pred             HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcCCC
Q 000856         1162 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD 1238 (1252)
Q Consensus      1162 ALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~~~ 1238 (1252)
                      ||+++|++||||||||+||+.+...+.+.|++..+  +.|+|+|||+++.+. .||+|++|++|+|++.|+++++.+.+.
T Consensus       147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~  226 (369)
T PRK11000        147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA  226 (369)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence            99999999999999999999999999999988753  789999999999875 589999999999999999999988765


Q ss_pred             chhH
Q 000856         1239 GAYS 1242 (1252)
Q Consensus      1239 g~y~ 1242 (1252)
                      ..|-
T Consensus       227 ~~~~  230 (369)
T PRK11000        227 NRFV  230 (369)
T ss_pred             cHHH
Confidence            5543

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.3e-41  Score=377.58  Aligned_cols=212  Identities=32%  Similarity=0.554  Sum_probs=182.2

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCH---HHHhc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL---KSLRL 1086 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~---~~lR~ 1086 (1252)
                      |+++||+++|+.  +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.   ..+|+
T Consensus         2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (243)
T TIGR02315         2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR   79 (243)
T ss_pred             eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence            689999999961  2359999999999999999999999999999999999999999999999999887654   34688


Q ss_pred             ccEEEccccccCc-ccHHHHhccCCCC--------------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 000856         1087 KIGLVQQEPALFA-ASIFDNIAYGKEG--------------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 1151 (1252)
Q Consensus      1087 ~i~~VpQd~~lf~-gTIreNl~~~~~~--------------~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSg 1151 (1252)
                      +++|+||++.+|. .|+++|+.++...              ..++++.++++..++.++..           .....|||
T Consensus        80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSg  148 (243)
T TIGR02315        80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQLSG  148 (243)
T ss_pred             heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCH
Confidence            9999999998886 6999999764211              11234566677776654433           23457999


Q ss_pred             hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEec
Q 000856         1152 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1152 GQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G 1228 (1252)
                      |||||++|||||+++|++|||||||++||+.+...+.+.|++..  .++|+|++||+++.+. .||+|++|++|++++.|
T Consensus       149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~  228 (243)
T TIGR02315       149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG  228 (243)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            99999999999999999999999999999999999999999874  3789999999999985 58999999999999999


Q ss_pred             Chhhhh
Q 000856         1229 SHSELV 1234 (1252)
Q Consensus      1229 ~~~eLl 1234 (1252)
                      +++++.
T Consensus       229 ~~~~~~  234 (243)
T TIGR02315       229 APSELD  234 (243)
T ss_pred             CHHHhC
Confidence            999873

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-41  Score=383.00  Aligned_cols=221  Identities=31%  Similarity=0.500  Sum_probs=186.3

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .++++|++++|++.....+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13650          4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI   83 (279)
T ss_pred             eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence            48999999999743224589999999999999999999999999999999999999999999999999877777788899


Q ss_pred             eEEccCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000856          444 GLVNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       444 ~~v~Q~~~--l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~  519 (1252)
                      +||+|+|.  ++..||+|||.++...  .+.++....     +.+.++.+  |++....+.+.+||||||||++|||||+
T Consensus        84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LSgGq~qrv~lAral~  156 (279)
T PRK13650         84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER-----VNEALELV--GMQDFKEREPARLSGGQKQRVAIAGAVA  156 (279)
T ss_pred             eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence            99999984  4566999999987422  122221111     12233333  5555566677899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhc
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       520 ~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      .+|++|||||||++||+.+++.+.+.|+++.+  |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus       157 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  230 (279)
T PRK13650        157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR  230 (279)
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence            99999999999999999999999999998853  8999999999999977999999999999999999887654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.3e-42  Score=394.22  Aligned_cols=217  Identities=31%  Similarity=0.493  Sum_probs=187.8

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||+++.+.+..  ++.+
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i   78 (353)
T TIGR03265         4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY   78 (353)
T ss_pred             EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence            4899999999974   3489999999999999999999999999999999999999999999999999876653  5679


Q ss_pred             eEEccCCCCchh-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000856          444 GLVNQEPALFAT-TILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-tv~~ni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~  520 (1252)
                      +||+|++.+|+. ||+||+.|+....  ...+..     ..+.+.++.+  |++....+.+.+|||||||||+|||||+.
T Consensus        79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~  151 (353)
T TIGR03265        79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT  151 (353)
T ss_pred             EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence            999999999975 9999999874321  112211     1223445555  67777788889999999999999999999


Q ss_pred             CCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhcc
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       521 ~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      +|+++|||||||+||+.+++.+.+.|+++.+  |.|+|+|||+++++.. ||+|++|++|++++.|+++++.++.
T Consensus       152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p  226 (353)
T TIGR03265       152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP  226 (353)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence            9999999999999999999999999998753  8999999999999865 8999999999999999999998653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=1.7e-41  Score=380.72  Aligned_cols=224  Identities=29%  Similarity=0.496  Sum_probs=189.0

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHH---HHh
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLR 1085 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~---~lR 1085 (1252)
                      -|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+..   .+|
T Consensus         7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~   83 (269)
T PRK11831          7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR   83 (269)
T ss_pred             eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence            4899999999953   3699999999999999999999999999999999999999999999999998876543   357


Q ss_pred             cccEEEccccccCcc-cHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 000856         1086 LKIGLVQQEPALFAA-SIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 1157 (1252)
Q Consensus      1086 ~~i~~VpQd~~lf~g-TIreNl~~~~~---~~~d----eei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1157 (1252)
                      ++++|+||++.+|.+ |++||+.++..   ..+.    +.+.++++..++.+....       .    ...||||||||+
T Consensus        84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~----~~~LSgGq~qrv  152 (269)
T PRK11831         84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-------M----PSELSGGMARRA  152 (269)
T ss_pred             hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-------C----hhhCCHHHHHHH
Confidence            889999999999976 99999975321   1222    244556666666543322       2    246999999999


Q ss_pred             HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000856         1158 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1158 aLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      +|||||+++|++|||||||++||+.+...+.+.|++..+  ++|||+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus       153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  232 (269)
T PRK11831        153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ  232 (269)
T ss_pred             HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999999999999999998753  7899999999998865 8999999999999999999998


Q ss_pred             cCCCchhHHHHH
Q 000856         1235 SRPDGAYSRLLQ 1246 (1252)
Q Consensus      1235 ~~~~g~y~~l~~ 1246 (1252)
                      +++...+..++.
T Consensus       233 ~~~~~~~~~~~~  244 (269)
T PRK11831        233 ANPDPRVRQFLD  244 (269)
T ss_pred             cCCcHHHHHHHH
Confidence            764445555554

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=2.3e-41  Score=373.13  Aligned_cols=212  Identities=29%  Similarity=0.543  Sum_probs=181.9

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      ++++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... +++++
T Consensus         2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~   77 (236)
T TIGR03864         2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG   77 (236)
T ss_pred             EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence            689999999963   36999999999999999999999999999999999999999999999999998776544 45899


Q ss_pred             EEcccccc-CcccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPAL-FAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~l-f~gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      |+||++.+ +..|+++|+.++..  ..+    ++++.+.++..++.+.           .......||||||||++||||
T Consensus        78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~lara  146 (236)
T TIGR03864        78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARA  146 (236)
T ss_pred             EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHH
Confidence            99999987 57899999976421  122    2334455555554332           333445799999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      ++++|++|||||||++||+.+...+.+.|+++.  +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus       147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  222 (236)
T TIGR03864       147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA  222 (236)
T ss_pred             HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence            999999999999999999999999999999875  47899999999999988999999999999999999999864

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-41  Score=378.19  Aligned_cols=223  Identities=35%  Similarity=0.569  Sum_probs=189.2

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCcccCCC--CH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRL--NL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-----~~G~I~idG~di~~~--~~ 1081 (1252)
                      .|+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.+||.++...  +.
T Consensus        12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   88 (258)
T PRK14268         12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV   88 (258)
T ss_pred             eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence            5999999999963   3599999999999999999999999999999999999985     799999999998653  34


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 1155 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~~~d----eei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1155 (1252)
                      ..+|+.++|+||++.+|..|++||+.++..  ..+.    +++.++++.+++.+.+.   ..++++    ...|||||||
T Consensus        89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~~----~~~LSgG~~q  161 (258)
T PRK14268         89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLKSP----ALSLSGGQQQ  161 (258)
T ss_pred             HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhcCC----hhhCCHHHHH
Confidence            567889999999999999999999986421  1222    34566777777654321   223433    4579999999


Q ss_pred             HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000856         1156 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1156 rlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      |++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.+ ||+|++|++|++++.|+++++.
T Consensus       162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  241 (258)
T PRK14268        162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF  241 (258)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999999999999999999988668999999999999855 8999999999999999999998


Q ss_pred             cCCCchh
Q 000856         1235 SRPDGAY 1241 (1252)
Q Consensus      1235 ~~~~g~y 1241 (1252)
                      +++...|
T Consensus       242 ~~~~~~~  248 (258)
T PRK14268        242 HNPREKS  248 (258)
T ss_pred             cCCCCHH
Confidence            7654444

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.1e-41  Score=377.34  Aligned_cols=218  Identities=32%  Similarity=0.521  Sum_probs=186.9

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCC---------
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN--------- 1080 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~--------- 1080 (1252)
                      |+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++         
T Consensus         1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   77 (252)
T TIGR03005         1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA   77 (252)
T ss_pred             CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence            579999999963   36999999999999999999999999999999999999999999999999987553         


Q ss_pred             ----HHHHhcccEEEccccccCc-ccHHHHhccCC---CCC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC
Q 000856         1081 ----LKSLRLKIGLVQQEPALFA-ASIFDNIAYGK---EGA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 1148 (1252)
Q Consensus      1081 ----~~~lR~~i~~VpQd~~lf~-gTIreNl~~~~---~~~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~ 1148 (1252)
                          ...+|+.++|++|++.+|. .|+++|+.++.   ...    .++++.++++..++.++....           ...
T Consensus        78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~  146 (252)
T TIGR03005        78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-----------PAQ  146 (252)
T ss_pred             chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-----------hhh
Confidence                2467889999999998885 79999998641   111    234566777777776554433           357


Q ss_pred             CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEE
Q 000856         1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIV 1225 (1252)
Q Consensus      1149 LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Iv 1225 (1252)
                      ||||||||++|||||+++|++|||||||++||+.+...+.+.|++..+  ++|+|+|||+++.+. .||++++|++|+++
T Consensus       147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~  226 (252)
T TIGR03005       147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV  226 (252)
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999998753  789999999999985 58999999999999


Q ss_pred             EecChhhhhcCCCchh
Q 000856         1226 EQGSHSELVSRPDGAY 1241 (1252)
Q Consensus      1226 e~G~~~eLl~~~~g~y 1241 (1252)
                      +.|+++++.+.+...|
T Consensus       227 ~~g~~~~~~~~~~~~~  242 (252)
T TIGR03005       227 EQGKPDEIFRQPKEER  242 (252)
T ss_pred             EeCCHHHHhcCCCcHH
Confidence            9999999987644334

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-41  Score=380.03  Aligned_cols=216  Identities=31%  Similarity=0.574  Sum_probs=188.5

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .|+++|++++|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus         7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i   85 (271)
T PRK13632          7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI   85 (271)
T ss_pred             EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence            48999999999632 34699999999999999999999999999999999999999999999999999887878889999


Q ss_pred             EEEcccc--ccCcccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 000856         1089 GLVQQEP--ALFAASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 1160 (1252)
Q Consensus      1089 ~~VpQd~--~lf~gTIreNl~~~~~--~~~de----ei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 1160 (1252)
                      +|+||+|  .++..|++||+.++..  ..+.+    .+.++++..++.++....+           .+||||||||++||
T Consensus        86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~la  154 (271)
T PRK13632         86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-----------QNLSGGQKQRVAIA  154 (271)
T ss_pred             EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-----------ccCCHHHHHHHHHH
Confidence            9999998  4567899999986421  12322    3556677777766554433           57999999999999


Q ss_pred             HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1161 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1161 RALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      |||+++|++|||||||++||+.+.+.+++.|++..+  ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus       155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  232 (271)
T PRK13632        155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN  232 (271)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence            999999999999999999999999999999998753  4899999999999888999999999999999999988764

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-41  Score=383.58  Aligned_cols=220  Identities=26%  Similarity=0.507  Sum_probs=184.3

Q ss_pred             EEEEeEEEECCCCCC--CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccC----CCHHH
Q 000856          365 IEFKNVTFSYPSRPD--VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT----LQLRW  438 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~----~~~~~  438 (1252)
                      |+++|++|+|+....  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..    .....
T Consensus         2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   81 (288)
T PRK13643          2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP   81 (288)
T ss_pred             EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence            789999999974321  258999999999999999999999999999999999999999999999999853    23456


Q ss_pred             HhhhceEEccCC--CCchhcHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHhhCCCCcc-ccccCCCCCCChHHHHHHH
Q 000856          439 LRDQIGLVNQEP--ALFATTILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIA  513 (1252)
Q Consensus       439 ~~~~i~~v~Q~~--~l~~~tv~~ni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~LSgGqkqRv~  513 (1252)
                      +++.++||+|+|  .+|..|+.||+.|+....  ..++...     .+.+.++.+  |+. ...++.+.+||||||||++
T Consensus        82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva  154 (288)
T PRK13643         82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMV--GLADEFWEKSPFELSGGQMRRVA  154 (288)
T ss_pred             HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence            788999999998  788889999999874321  1222211     112333333  553 3456778899999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          514 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       514 lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |||||+.+|+++||||||++||+.+++.+.+.++++. +|+|||++||+++.+.. ||+|++|++|+++++|+++++...
T Consensus       155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  234 (288)
T PRK13643        155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE  234 (288)
T ss_pred             HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence            9999999999999999999999999999999999875 48999999999999865 999999999999999999998653

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-41  Score=377.27  Aligned_cols=224  Identities=31%  Similarity=0.530  Sum_probs=188.7

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCcccCC--CCH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~-----p~~G~I~idG~di~~--~~~ 1081 (1252)
                      .|+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.+||+++..  .+.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~   80 (251)
T PRK14251          4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL   80 (251)
T ss_pred             eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence            4899999999963   369999999999999999999999999999999999997     479999999999864  345


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCCC--CC-----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~~-----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      ..+|+.++|++|++.+|+.|++||+.++..  ..     .++++.++++..+++...   +..++    ....+||||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~----~~~~~LS~Gq~  153 (251)
T PRK14251         81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNLD----RNAQAFSGGQQ  153 (251)
T ss_pred             HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHhc----cChhhCCHHHH
Confidence            567889999999999999999999986421  11     123456667777764321   11223    34457999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||++||||++++|++|||||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus       154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  233 (251)
T PRK14251        154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM  233 (251)
T ss_pred             HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998777899999999999865 899999999999999999999


Q ss_pred             hcCCCchhH
Q 000856         1234 VSRPDGAYS 1242 (1252)
Q Consensus      1234 l~~~~g~y~ 1242 (1252)
                      ...+...|.
T Consensus       234 ~~~~~~~~~  242 (251)
T PRK14251        234 FIAPKKQIT  242 (251)
T ss_pred             HhCCCCHHH
Confidence            876444444

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-41  Score=382.35  Aligned_cols=220  Identities=30%  Similarity=0.523  Sum_probs=184.6

Q ss_pred             EEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCC--HHHHh
Q 000856          365 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ--LRWLR  440 (1252)
Q Consensus       365 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~--~~~~~  440 (1252)
                      |+++|++++|++..  .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+  ...++
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (287)
T PRK13637          3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR   82 (287)
T ss_pred             EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence            78999999997422  136999999999999999999999999999999999999999999999999987643  34677


Q ss_pred             hhceEEccCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCcc--ccccCCCCCCChHHHHHHHH
Q 000856          441 DQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS--TQVGERGVQLSGGQKQRIAI  514 (1252)
Q Consensus       441 ~~i~~v~Q~~--~l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~g~~LSgGqkqRv~l  514 (1252)
                      ++|+||+|+|  .+++.|++||+.++...  ...++....     +.+.++.+  |+.  +..++.+.+||||||||++|
T Consensus        83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~i  155 (287)
T PRK13637         83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAI  155 (287)
T ss_pred             hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHHc--CCCchhhccCCcccCCHHHHHHHHH
Confidence            8999999998  56788999999986321  222222211     12233333  554  45677889999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          515 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       515 ARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      ||||+.+|++|||||||++||+.+++.+.+.|+++.+  |+|||++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus       156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  235 (287)
T PRK13637        156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE  235 (287)
T ss_pred             HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence            9999999999999999999999999999999998853  8999999999999854 899999999999999999987653

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.6e-42  Score=340.75  Aligned_cols=219  Identities=32%  Similarity=0.483  Sum_probs=186.1

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      +++.+++++|++  ...+++|+||+++.||+++|.||||+||||++++|++++.|++|.|++||.|... ++...|++||
T Consensus         2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG   78 (245)
T COG4555           2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG   78 (245)
T ss_pred             eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence            688999999975  3458999999999999999999999999999999999999999999999999865 4556788999


Q ss_pred             EEccCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCC
Q 000856          445 LVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK  523 (1252)
Q Consensus       445 ~v~Q~~~l~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~  523 (1252)
                      .++-+..++.. |++|||.|...-....+.....+.+   +..+.+  +++...+++..++|-|+||||+|||||.++|+
T Consensus        79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~---~l~k~l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~  153 (245)
T COG4555          79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIA---ELSKRL--QLLEYLDRRVGEFSTGMKQKVAIARALVHDPS  153 (245)
T ss_pred             eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHH---HHHHHh--ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence            99988888866 9999998742211111111122222   333333  56666777888999999999999999999999


Q ss_pred             EEEEeCCCCCCChHhHHHHHHHHHHhcC-CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          524 ILLLDEATSALDAGSESIVQEALDRLMV-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       524 illlDEpts~LD~~~~~~~~~~l~~~~~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +++||||||+||..+.+.+.+.+.+++. |++||+.||.+++++. ||+|+++++|+++..|+.+++.+.
T Consensus       154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r  223 (245)
T COG4555         154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR  223 (245)
T ss_pred             eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence            9999999999999999999999999975 9999999999999986 999999999999999999998665

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-41  Score=381.26  Aligned_cols=217  Identities=30%  Similarity=0.516  Sum_probs=190.0

Q ss_pred             cEEEEeEEEECCCCC---CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCC-HHHH
Q 000856         1009 EIELRHVDFAYPSRP---DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-LKSL 1084 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~---~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~-~~~l 1084 (1252)
                      -++++|++++|++..   .+++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~   83 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI   83 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence            489999999996421   246999999999999999999999999999999999999999999999999997654 4567


Q ss_pred             hcccEEEccccc--cCcccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 000856         1085 RLKIGLVQQEPA--LFAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 1156 (1252)
Q Consensus      1085 R~~i~~VpQd~~--lf~gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1156 (1252)
                      |++++|+||+|.  +|..|+.+|+.++..  ..+    ++++.++++.+++.++....|           ..||||||||
T Consensus        84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr  152 (280)
T PRK13633         84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR  152 (280)
T ss_pred             hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence            899999999984  677799999987521  112    355778888888877765544           4699999999


Q ss_pred             HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhh
Q 000856         1157 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1157 laLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      ++|||||+++|++|||||||++||+.+...+.+.|+++.  .++|||++||+++.+..||++++|++|++++.|+++++.
T Consensus       153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~  232 (280)
T PRK13633        153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF  232 (280)
T ss_pred             HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence            999999999999999999999999999999999999874  378999999999999889999999999999999999987


Q ss_pred             cC
Q 000856         1235 SR 1236 (1252)
Q Consensus      1235 ~~ 1236 (1252)
                      ++
T Consensus       233 ~~  234 (280)
T PRK13633        233 KE  234 (280)
T ss_pred             cC
Confidence            64

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-41  Score=377.26  Aligned_cols=221  Identities=31%  Similarity=0.512  Sum_probs=190.5

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCcccCC--CC
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LN 1080 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~-----p~~G~I~idG~di~~--~~ 1080 (1252)
                      ..|+++||+++|++   +++|+|+||+|++||.+||+|+||||||||+++|+|+++     |++|+|.+||.++..  .+
T Consensus        19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~   95 (267)
T PRK14237         19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN   95 (267)
T ss_pred             eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence            36999999999953   469999999999999999999999999999999999997     589999999999864  34


Q ss_pred             HHHHhcccEEEccccccCcccHHHHhccCCC--CC-----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 000856         1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 1153 (1252)
Q Consensus      1081 ~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~~-----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQ 1153 (1252)
                      ...+|+.++|+||++.+|.+|++||+.++..  ..     .++++.++++..++.+.+..       ........|||||
T Consensus        96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~  168 (267)
T PRK14237         96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKD-------DLHKSALTLSGGQ  168 (267)
T ss_pred             hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhh-------hhcCCcccCCHHH
Confidence            6678899999999999999999999986421  11     23456677788877654432       2334556799999


Q ss_pred             HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhh
Q 000856         1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSE 1232 (1252)
Q Consensus      1154 rQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~e 1232 (1252)
                      |||++||||++++|++|||||||++||+.+...+.+.|++..++.|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus       169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  248 (267)
T PRK14237        169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN  248 (267)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence            9999999999999999999999999999999999999999877889999999999885 589999999999999999999


Q ss_pred             hhcCCC
Q 000856         1233 LVSRPD 1238 (1252)
Q Consensus      1233 Ll~~~~ 1238 (1252)
                      +.+.+.
T Consensus       249 ~~~~~~  254 (267)
T PRK14237        249 IFTNPK  254 (267)
T ss_pred             HhcCCC
Confidence            986533

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-41  Score=378.36  Aligned_cols=222  Identities=32%  Similarity=0.552  Sum_probs=188.9

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCcccCCCC--HH
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRRLN--LK 1082 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~-----p~~G~I~idG~di~~~~--~~ 1082 (1252)
                      -+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.++|.++...+  ..
T Consensus         6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   82 (251)
T PRK14244          6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV   82 (251)
T ss_pred             EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence            478999999953   369999999999999999999999999999999999986     47999999999987543  34


Q ss_pred             HHhcccEEEccccccCcccHHHHhccCCC--C------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1083 SLRLKIGLVQQEPALFAASIFDNIAYGKE--G------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1083 ~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~------~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      .+|++++|+||++.+|.+|+++|+.++..  .      ..++++.++++..++.+++.       +.+...+..||||||
T Consensus        83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~  155 (251)
T PRK14244         83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ  155 (251)
T ss_pred             HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence            67889999999999999999999986411  1      12345667778877755322       122334567999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus       156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  235 (251)
T PRK14244        156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI  235 (251)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999988778999999999999864 899999999999999999999


Q ss_pred             hcCCCchh
Q 000856         1234 VSRPDGAY 1241 (1252)
Q Consensus      1234 l~~~~g~y 1241 (1252)
                      ++.+...|
T Consensus       236 ~~~~~~~~  243 (251)
T PRK14244        236 FKNPQSSK  243 (251)
T ss_pred             hcCCCChH
Confidence            87655544

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=1.2e-41  Score=367.09  Aligned_cols=199  Identities=28%  Similarity=0.522  Sum_probs=174.3

Q ss_pred             EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEE
Q 000856         1011 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 1090 (1252)
Q Consensus      1011 ~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~ 1090 (1252)
                      +++|++++|++.  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..   ...|++++|
T Consensus         1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~   75 (205)
T cd03226           1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY   75 (205)
T ss_pred             CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence            368999999631  369999999999999999999999999999999999999999999999998864   456788999


Q ss_pred             Ecccc--ccCcccHHHHhccCCCC--CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 000856         1091 VQQEP--ALFAASIFDNIAYGKEG--ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 1166 (1252)
Q Consensus      1091 VpQd~--~lf~gTIreNl~~~~~~--~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 1166 (1252)
                      +||++  .+|..|++||+.++...  ..++++.++++..++.++....|           ..||||||||++|||||+++
T Consensus        76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~  144 (205)
T cd03226          76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG  144 (205)
T ss_pred             EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence            99998  46789999999875332  23457888899998877655443           36999999999999999999


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEE
Q 000856         1167 PAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIV 1225 (1252)
Q Consensus      1167 p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Iv 1225 (1252)
                      |++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus       145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            99999999999999999999999999874 57899999999999864 8999999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.2e-41  Score=376.51  Aligned_cols=224  Identities=33%  Similarity=0.519  Sum_probs=189.9

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCcccCC--CC
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LN 1080 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~-----p~~G~I~idG~di~~--~~ 1080 (1252)
                      ..|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.+||.++..  .+
T Consensus        12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~   88 (269)
T PRK14259         12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD   88 (269)
T ss_pred             ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence            35999999999963   359999999999999999999999999999999999998     689999999999863  56


Q ss_pred             HHHHhcccEEEccccccCcccHHHHhccCCC--CC---CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 000856         1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA---TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 1155 (1252)
Q Consensus      1081 ~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~~---~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1155 (1252)
                      ...+|++++|+||++.+|..|++||+.++..  ..   .++++.++++.+++.+.+.       .........|||||||
T Consensus        89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q  161 (269)
T PRK14259         89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQQ  161 (269)
T ss_pred             HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHHH
Confidence            6778899999999999998999999987532  11   1345666777777654322       1223334579999999


Q ss_pred             HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeC-----------CE
Q 000856         1156 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQD-----------GR 1223 (1252)
Q Consensus      1156 rlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~-----------G~ 1223 (1252)
                      |++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|++           |+
T Consensus       162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~  241 (269)
T PRK14259        162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY  241 (269)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence            99999999999999999999999999999999999999877789999999999885 5899999996           77


Q ss_pred             EEEecChhhhhcCCCchh
Q 000856         1224 IVEQGSHSELVSRPDGAY 1241 (1252)
Q Consensus      1224 Ive~G~~~eLl~~~~g~y 1241 (1252)
                      +++.|++++++..+...|
T Consensus       242 ~~~~~~~~~~~~~~~~~~  259 (269)
T PRK14259        242 LVEFNETKKIFNSPKQKA  259 (269)
T ss_pred             EEEeCCHHHHHhCcCChH
Confidence            999999999987544333

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=1.9e-41  Score=367.52  Aligned_cols=203  Identities=26%  Similarity=0.502  Sum_probs=177.8

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++||+++|++   .++++|+||+|++| ++||+|+||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus         1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~   75 (211)
T cd03264           1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG   75 (211)
T ss_pred             CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence            578999999963   36999999999999 99999999999999999999999999999999999998776 67889999


Q ss_pred             EEccccccCcc-cHHHHhccCC--CCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPALFAA-SIFDNIAYGK--EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~lf~g-TIreNl~~~~--~~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      |+||++.+|.+ |++||+.+..  ...+    ++++.++++..++.++.+       +.+    ..||||||||++||||
T Consensus        76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~LS~G~~qrv~la~a  144 (211)
T cd03264          76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-------KKI----GSLSGGMRRRVGIAQA  144 (211)
T ss_pred             EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-------Cch----hhCCHHHHHHHHHHHH
Confidence            99999999876 9999997531  1111    345677788888765533       333    4699999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEec
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G 1228 (1252)
                      ++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .|||+++|++|++++.|
T Consensus       145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            9999999999999999999999999999999876799999999999986 48999999999998865

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=1.3e-41  Score=373.15  Aligned_cols=213  Identities=35%  Similarity=0.580  Sum_probs=177.3

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhccc-----CCCCcEEEECCccccCCC--HH
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY-----DPNAGHVLLDNVDIKTLQ--LR  437 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~-----~~~~G~i~~~g~~~~~~~--~~  437 (1252)
                      |+++|++++|+++   ++|+|+||+|++||+++|+||||||||||+++|+|++     +|++|+|.++|+++...+  ..
T Consensus         1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~   77 (227)
T cd03260           1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL   77 (227)
T ss_pred             CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence            4789999999743   5899999999999999999999999999999999999     999999999999987765  45


Q ss_pred             HHhhhceEEccCCCCchhcHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHhhCCCCccccccCC--CCCCChHHHHHH
Q 000856          438 WLRDQIGLVNQEPALFATTILENILYGKPEA---TMAEVEAAASAANAHSFITLLPNGYSTQVGER--GVQLSGGQKQRI  512 (1252)
Q Consensus       438 ~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--g~~LSgGqkqRv  512 (1252)
                      .++++++|++|++.++..|++||+.++....   ..++..+     .+.+.++.+  |+.....+.  +.+||||||||+
T Consensus        78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qrv  150 (227)
T cd03260          78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE-----RVEEALRKA--ALWDEVKDRLHALGLSGGQQQRL  150 (227)
T ss_pred             HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHH-----HHHHHHHHc--CCChHHhccCCcccCCHHHHHHH
Confidence            6778899999999988779999998753211   1111111     112223333  444434444  579999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHH
Q 000856          513 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEE  587 (1252)
Q Consensus       513 ~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~  587 (1252)
                      +|||||+.+|+++||||||++||+.+++.+.+.|+++.+.+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus       151 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  226 (227)
T cd03260         151 CLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ  226 (227)
T ss_pred             HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence            9999999999999999999999999999999999998655899999999999865 89999999999999998765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-41  Score=375.78  Aligned_cols=223  Identities=33%  Similarity=0.532  Sum_probs=189.2

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhcc---CCC--CCceEEECCcccCCC--CH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERF---YDP--TAGKVMIDGKDIRRL--NL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl---~~p--~~G~I~idG~di~~~--~~ 1081 (1252)
                      .++++|++++|++   .++|+|+||+|++||.+||+|+||||||||+++|+|+   ++|  ++|+|.+||.++...  +.
T Consensus         3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   79 (250)
T PRK14245          3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV   79 (250)
T ss_pred             EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence            4899999999963   3599999999999999999999999999999999997   454  589999999998754  34


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCCC--C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~-----~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      ..+|++++|+||++.+|..|+++|+.++..  .     ..++++.++++.+++.+.+..       .....+..||||||
T Consensus        80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~  152 (250)
T PRK14245         80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD-------KLKESAFALSGGQQ  152 (250)
T ss_pred             HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhh-------hhhCCcccCCHHHH
Confidence            677889999999999999999999976421  1     123456677777777554432       12344567999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+. .||+|++|++|++++.|+++++
T Consensus       153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~  232 (250)
T PRK14245        153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI  232 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999999999999999999877899999999999985 5899999999999999999999


Q ss_pred             hcCCCchh
Q 000856         1234 VSRPDGAY 1241 (1252)
Q Consensus      1234 l~~~~g~y 1241 (1252)
                      .+++...|
T Consensus       233 ~~~~~~~~  240 (250)
T PRK14245        233 FTNPEKEA  240 (250)
T ss_pred             hcCCCChH
Confidence            87644433

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-41  Score=392.35  Aligned_cols=206  Identities=38%  Similarity=0.625  Sum_probs=180.4

Q ss_pred             cceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHH----hcccEEEccccccCc-c
Q 000856         1026 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL----RLKIGLVQQEPALFA-A 1100 (1252)
Q Consensus      1026 ~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~l----R~~i~~VpQd~~lf~-g 1100 (1252)
                      .+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.|+.+.+...+    |++++||||++.+|. .
T Consensus        42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~  121 (400)
T PRK10070         42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM  121 (400)
T ss_pred             EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence            37999999999999999999999999999999999999999999999999998876554    468999999999986 5


Q ss_pred             cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 000856         1101 SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 1174 (1252)
Q Consensus      1101 TIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDE 1174 (1252)
                      |++||+.++..  ..+    ++++.++++.+++.++....|           .+||||||||++|||||+.+|+||||||
T Consensus       122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE  190 (400)
T PRK10070        122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE  190 (400)
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            99999986521  112    345677888888877665544           4699999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcCCCchhH
Q 000856         1175 ATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPDGAYS 1242 (1252)
Q Consensus      1175 pTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~ 1242 (1252)
                      ||++||+.+...+++.|++..  .++|+|+|||+++.+. .||+|++|++|+|++.|++++++.++...|.
T Consensus       191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v  261 (400)
T PRK10070        191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYV  261 (400)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHH
Confidence            999999999999999999874  4789999999999885 5899999999999999999999877555453

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.3e-41  Score=379.77  Aligned_cols=214  Identities=31%  Similarity=0.529  Sum_probs=188.6

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      ++++||+++|++.  .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++...+...++++++
T Consensus         4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~   81 (277)
T PRK13652          4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG   81 (277)
T ss_pred             EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence            7899999999632  35999999999999999999999999999999999999999999999999998877788899999


Q ss_pred             EEcccc--ccCcccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 000856         1090 LVQQEP--ALFAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161 (1252)
Q Consensus      1090 ~VpQd~--~lf~gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 1161 (1252)
                      ||||++  .+|..|+++|+.++..  ..+    ++.+.++++.+++.++....|           ..||||||||++|||
T Consensus        82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar  150 (277)
T PRK13652         82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG  150 (277)
T ss_pred             EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence            999998  4788999999986421  222    234677788888876655443           469999999999999


Q ss_pred             HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1162 AVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1162 ALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      ||+.+|++|||||||++||+.+...+.+.+++..+  ++|+|++||+++.+. .||||++|++|++++.|+++++++.
T Consensus       151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  228 (277)
T PRK13652        151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ  228 (277)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence            99999999999999999999999999999998753  789999999999984 6899999999999999999999764

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-41  Score=379.76  Aligned_cols=217  Identities=31%  Similarity=0.549  Sum_probs=191.3

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCC---ceEEECCcccCCCCHHHH
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA---GKVMIDGKDIRRLNLKSL 1084 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~---G~I~idG~di~~~~~~~l 1084 (1252)
                      +.|+++|++++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++   |+|.+||.++...+...+
T Consensus         4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~   82 (282)
T PRK13640          4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI   82 (282)
T ss_pred             ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence            358999999999632 2359999999999999999999999999999999999999998   899999999988777788


Q ss_pred             hcccEEEcccc--ccCcccHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 000856         1085 RLKIGLVQQEP--ALFAASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 1156 (1252)
Q Consensus      1085 R~~i~~VpQd~--~lf~gTIreNl~~~~~--~~~d----eei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1156 (1252)
                      |++++||||+|  .+++.|++|||.++..  ..+.    +++.++++.+++.++....|           .+||||||||
T Consensus        83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qr  151 (282)
T PRK13640         83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQR  151 (282)
T ss_pred             HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHH
Confidence            89999999998  4678999999986522  2333    34677888888877655544           4799999999


Q ss_pred             HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhh
Q 000856         1157 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1157 laLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      ++|||||+.+|++|||||||++||+.+...+.+.|+++.+  ++|||++||+++.+..||+|++|++|++++.|++++++
T Consensus       152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  231 (282)
T PRK13640        152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF  231 (282)
T ss_pred             HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence            9999999999999999999999999999999999998753  78999999999999889999999999999999999887


Q ss_pred             cC
Q 000856         1235 SR 1236 (1252)
Q Consensus      1235 ~~ 1236 (1252)
                      ..
T Consensus       232 ~~  233 (282)
T PRK13640        232 SK  233 (282)
T ss_pred             cC
Confidence            54

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=8.9e-42  Score=392.06  Aligned_cols=205  Identities=33%  Similarity=0.506  Sum_probs=177.5

Q ss_pred             CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHH----hhhceEEccCCCCchh
Q 000856          380 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL----RDQIGLVNQEPALFAT  455 (1252)
Q Consensus       380 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----~~~i~~v~Q~~~l~~~  455 (1252)
                      +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+...+    |++++||+|++++|+.
T Consensus         6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~   85 (363)
T TIGR01186         6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH   85 (363)
T ss_pred             ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence            458999999999999999999999999999999999999999999999999998888776    6789999999999975


Q ss_pred             -cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 000856          456 -TILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS  532 (1252)
Q Consensus       456 -tv~~ni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts  532 (1252)
                       ||+||+.++....  ..++..+     .+.+.++.+  |++...++.+.+|||||||||+|||||+.+|+|+|||||||
T Consensus        86 ~TV~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~v--gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s  158 (363)
T TIGR01186        86 MTILQNTSLGPELLGWPEQERKE-----KALELLKLV--GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS  158 (363)
T ss_pred             CCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence             9999999864321  1111111     112333333  66667788888999999999999999999999999999999


Q ss_pred             CCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          533 ALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       533 ~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +||+.+++.+++.+.++.  .++|+|+|||+++++.. ||+|++|++|++++.|++++++.+
T Consensus       159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~  220 (363)
T TIGR01186       159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN  220 (363)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence            999999999999999874  38999999999998755 899999999999999999998765

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=1.5e-41  Score=375.18  Aligned_cols=221  Identities=31%  Similarity=0.506  Sum_probs=185.7

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHH-hhhc
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQI  443 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~i  443 (1252)
                      ++++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus         1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (236)
T cd03219           1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI   77 (236)
T ss_pred             CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence            468999999963   358999999999999999999999999999999999999999999999999887765543 5679


Q ss_pred             eEEccCCCCchh-cHHHHHhcCCCCCCHHHH-------HHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 000856          444 GLVNQEPALFAT-TILENILYGKPEATMAEV-------EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA  515 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-tv~~ni~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lA  515 (1252)
                      +|++|++.++++ |++||+.++........+       ........+.+.++.+  |++...+..+.+||||||||++||
T Consensus        78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la  155 (236)
T cd03219          78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA  155 (236)
T ss_pred             EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence            999999999876 999999876421110000       0001111234455555  777777888899999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          516 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       516 Ral~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      |||+.+|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  232 (236)
T cd03219         156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN  232 (236)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence            99999999999999999999999999999999875 58999999999999866 89999999999999999888754

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.3e-41  Score=375.44  Aligned_cols=224  Identities=32%  Similarity=0.507  Sum_probs=189.0

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--C---CCceEEECCcccCC--CCH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--P---TAGKVMIDGKDIRR--LNL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~--p---~~G~I~idG~di~~--~~~ 1081 (1252)
                      -|+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++  |   ++|+|.+||.++..  .+.
T Consensus        12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~   88 (259)
T PRK14274         12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL   88 (259)
T ss_pred             eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence            4899999999963   359999999999999999999999999999999999997  3   59999999999864  445


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCCC--C-CCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-ATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~-~~d----eei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      ..+|++++|+||++.+|.+|++||+.++..  . .++    +++.++++..++.+++..       ........||||||
T Consensus        89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~l~~~~~~LS~Gq~  161 (259)
T PRK14274         89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD-------RLHTQALSLSGGQQ  161 (259)
T ss_pred             HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHH
Confidence            678899999999999999999999976421  1 122    234556667776544321       12334457999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||||++|++|++++.|+++++
T Consensus       162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  241 (259)
T PRK14274        162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM  241 (259)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            999999999999999999999999999999999999999877889999999999985 5899999999999999999999


Q ss_pred             hcCCCchhH
Q 000856         1234 VSRPDGAYS 1242 (1252)
Q Consensus      1234 l~~~~g~y~ 1242 (1252)
                      ++++...|.
T Consensus       242 ~~~~~~~~~  250 (259)
T PRK14274        242 FSNPDDQRT  250 (259)
T ss_pred             hhCCCCHHH
Confidence            876554443

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.5e-41  Score=384.63  Aligned_cols=226  Identities=27%  Similarity=0.441  Sum_probs=190.0

Q ss_pred             cEEEEeEEEECCCCC-------CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCH
Q 000856         1009 EIELRHVDFAYPSRP-------DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~-------~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~ 1081 (1252)
                      -|+++|++++|+.+.       ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.|+...+.
T Consensus         5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~   84 (327)
T PRK11308          5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP   84 (327)
T ss_pred             eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence            489999999996321       2469999999999999999999999999999999999999999999999999988765


Q ss_pred             H---HHhcccEEEccccc--cCc-ccHHHHhccC---CCCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCC
Q 000856         1082 K---SLRLKIGLVQQEPA--LFA-ASIFDNIAYG---KEGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 1148 (1252)
Q Consensus      1082 ~---~lR~~i~~VpQd~~--lf~-gTIreNl~~~---~~~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~ 1148 (1252)
                      .   .+|++++||||||.  ++. .|+.+|+...   .....    .+.+.++++.+++.+      .+++...    ..
T Consensus        85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~p----~~  154 (327)
T PRK11308         85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRYP----HM  154 (327)
T ss_pred             HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCCC----cc
Confidence            3   56889999999994  444 4888888531   11112    345677788887742      1233333    46


Q ss_pred             CChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEE
Q 000856         1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIV 1225 (1252)
Q Consensus      1149 LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Iv 1225 (1252)
                      ||||||||++|||||+.+|++||+||||++||..+...|.+.|+++.+  ++|+|+|||+++.+.. ||+|+||++|+|+
T Consensus       155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv  234 (327)
T PRK11308        155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV  234 (327)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence            999999999999999999999999999999999999999999998753  7899999999999964 8999999999999


Q ss_pred             EecChhhhhcCCCchhHHH
Q 000856         1226 EQGSHSELVSRPDGAYSRL 1244 (1252)
Q Consensus      1226 e~G~~~eLl~~~~g~y~~l 1244 (1252)
                      |.|+++++++++...|.+.
T Consensus       235 e~g~~~~~~~~p~hpyt~~  253 (327)
T PRK11308        235 EKGTKEQIFNNPRHPYTQA  253 (327)
T ss_pred             EECCHHHHhcCCCCHHHHH
Confidence            9999999998766667653

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.9e-41  Score=378.20  Aligned_cols=220  Identities=30%  Similarity=0.499  Sum_probs=186.6

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCcccCC--CCH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~-----p~~G~I~idG~di~~--~~~ 1081 (1252)
                      -|+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.++|.++..  .+.
T Consensus        21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   97 (268)
T PRK14248         21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV   97 (268)
T ss_pred             eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence            5999999999963   359999999999999999999999999999999999875     789999999999865  344


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCCC--C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~-----~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      ..+|++++|+||++.+|.+|+++|+.++..  .     ..++.+.++++..++.+.+..       .......+||||||
T Consensus        98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~  170 (268)
T PRK14248         98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD-------RLHSSALSLSGGQQ  170 (268)
T ss_pred             HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHH-------HHhcCcccCCHHHH
Confidence            567889999999999999999999986421  1     112445667777766432211       12234457999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+. .||+|++|++|++++.|+++++
T Consensus       171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  250 (268)
T PRK14248        171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI  250 (268)
T ss_pred             HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999999876789999999999875 5899999999999999999999


Q ss_pred             hcCCC
Q 000856         1234 VSRPD 1238 (1252)
Q Consensus      1234 l~~~~ 1238 (1252)
                      ..++.
T Consensus       251 ~~~~~  255 (268)
T PRK14248        251 FTSPK  255 (268)
T ss_pred             HhCCC
Confidence            87643

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=1.3e-41  Score=370.89  Aligned_cols=204  Identities=35%  Similarity=0.503  Sum_probs=174.2

Q ss_pred             EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHH----H
Q 000856         1010 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS----L 1084 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~----l 1084 (1252)
                      |+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...    .
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   80 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR   80 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence            47899999996321 146999999999999999999999999999999999999999999999999998776432    4


Q ss_pred             hcccEEEccccccCcc-cHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 000856         1085 RLKIGLVQQEPALFAA-SIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 1157 (1252)
Q Consensus      1085 R~~i~~VpQd~~lf~g-TIreNl~~~~~--~~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1157 (1252)
                      |++++|+||++.+|.+ |++||+.++..  ..    .++++.++++..++.+....           ...+||||||||+
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv  149 (218)
T cd03255          81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNH-----------YPSELSGGQQQRV  149 (218)
T ss_pred             hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhc-----------ChhhcCHHHHHHH
Confidence            6789999999999876 99999987422  11    13456667777776554433           2357999999999


Q ss_pred             HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEE
Q 000856         1158 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRI 1224 (1252)
Q Consensus      1158 aLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~I 1224 (1252)
                      +|||||+++|++|||||||++||+.+...+.+.|++..+  ++|||+|||+++.+..||+|++|++|++
T Consensus       150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i  218 (218)
T cd03255         150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI  218 (218)
T ss_pred             HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence            999999999999999999999999999999999998754  7899999999999888899999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=1.6e-41  Score=391.60  Aligned_cols=217  Identities=28%  Similarity=0.469  Sum_probs=186.8

Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC--cEEEECCccccCCCHHHHh
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA--GHVLLDNVDIKTLQLRWLR  440 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~--G~i~~~g~~~~~~~~~~~~  440 (1252)
                      +.|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++  |+|.++|+++...+.  .+
T Consensus         4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~   78 (362)
T TIGR03258         4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK   78 (362)
T ss_pred             eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence            56999999999974   358999999999999999999999999999999999999999  999999999876554  35


Q ss_pred             hhceEEccCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000856          441 DQIGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA  517 (1252)
Q Consensus       441 ~~i~~v~Q~~~l~~~-tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARa  517 (1252)
                      +.|+||+|++.+|+. ||+||+.|+...  ....+...     .+.+.++.+  |++...++.+.+|||||||||+||||
T Consensus        79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLARA  151 (362)
T TIGR03258        79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLV--GLGDAAAHLPAQLSGGMQQRIAIARA  151 (362)
T ss_pred             CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHHH
Confidence            679999999999976 999999986421  12222211     122334444  67667788888999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC---CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          518 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV---GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       518 l~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~---~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |+.+|++||||||||+||+.+++.+.+.|+++.+   |.|+|+|||+++++.. ||+|++|++|++++.|+++++.++
T Consensus       152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~  229 (362)
T TIGR03258       152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA  229 (362)
T ss_pred             HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999999999999998753   7899999999999866 899999999999999999999765

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=2.5e-41  Score=384.50  Aligned_cols=213  Identities=28%  Similarity=0.512  Sum_probs=184.1

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .|+++||+++|++   ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|+++
T Consensus         7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i   82 (306)
T PRK13537          7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV   82 (306)
T ss_pred             eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence            5999999999963   46999999999999999999999999999999999999999999999999997654 4578999


Q ss_pred             EEEccccccCc-ccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 000856         1089 GLVQQEPALFA-ASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161 (1252)
Q Consensus      1089 ~~VpQd~~lf~-gTIreNl~~~~~--~~~de----ei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 1161 (1252)
                      +|+||++.+|. .|++||+.+...  ..+..    .+.++++..++.       +..+++++    +||||||||++|||
T Consensus        83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~----~LS~G~~qrl~la~  151 (306)
T PRK13537         83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-------NKADAKVG----ELSGGMKRRLTLAR  151 (306)
T ss_pred             EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-------hHhcCchh----hCCHHHHHHHHHHH
Confidence            99999999885 699999985321  12322    334555555543       34455554    69999999999999


Q ss_pred             HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcC
Q 000856         1162 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1162 ALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      ||+++|++|+|||||++||+.+...+++.|+++. +++|||++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus       152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  228 (306)
T PRK13537        152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES  228 (306)
T ss_pred             HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence            9999999999999999999999999999999975 47899999999999865 899999999999999999999754

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=2.6e-41  Score=368.49  Aligned_cols=207  Identities=26%  Similarity=0.476  Sum_probs=177.9

Q ss_pred             EEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1010 IELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      |+++||+++|++... .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ....+|+++
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i   80 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL   80 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence            689999999964311 159999999999999999999999999999999999999999999999999875 456778999


Q ss_pred             EEEccccccCcc-cHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 000856         1089 GLVQQEPALFAA-SIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161 (1252)
Q Consensus      1089 ~~VpQd~~lf~g-TIreNl~~~~~--~~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 1161 (1252)
                      +|+||++.+|.+ |++||+.+...  ..    .++++.++++..++.+....           ....||||||||++|||
T Consensus        81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lar  149 (218)
T cd03266          81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDR-----------RVGGFSTGMRQKVAIAR  149 (218)
T ss_pred             EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhh-----------hhhhcCHHHHHHHHHHH
Confidence            999999999885 99999975321  11    23456677777777655433           33579999999999999


Q ss_pred             HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000856         1162 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1162 ALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1228 (1252)
                      |++++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus       150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence            9999999999999999999999999999999875 47899999999998765 8999999999998764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.1e-41  Score=377.52  Aligned_cols=223  Identities=33%  Similarity=0.550  Sum_probs=191.0

Q ss_pred             cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCcccCC--C
Q 000856         1007 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--L 1079 (1252)
Q Consensus      1007 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-----~~G~I~idG~di~~--~ 1079 (1252)
                      .+.++++||+++|++   .++|+|+||+|++||.+||+|+||||||||+++|+|+++|     ++|+|.+||.++..  .
T Consensus        23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~   99 (272)
T PRK14236         23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV   99 (272)
T ss_pred             CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence            346999999999963   3599999999999999999999999999999999999984     89999999999865  3


Q ss_pred             CHHHHhcccEEEccccccCcccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 000856         1080 NLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 1152 (1252)
Q Consensus      1080 ~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~~-~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgG 1152 (1252)
                      +...+|++++|+||++.+|.+|++||+.++..  .. .    ++++.++++.+++.+.+..       ..+..+..||||
T Consensus       100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G  172 (272)
T PRK14236        100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFGLSGG  172 (272)
T ss_pred             CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCcccCCHH
Confidence            45678899999999999999999999986421  11 1    2446777777777654432       233445679999


Q ss_pred             HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChh
Q 000856         1153 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHS 1231 (1252)
Q Consensus      1153 QrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~ 1231 (1252)
                      ||||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus       173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~  252 (272)
T PRK14236        173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD  252 (272)
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence            99999999999999999999999999999999999999999877889999999999985 58999999999999999999


Q ss_pred             hhhcCCCc
Q 000856         1232 ELVSRPDG 1239 (1252)
Q Consensus      1232 eLl~~~~g 1239 (1252)
                      ++.+.+..
T Consensus       253 ~~~~~~~~  260 (272)
T PRK14236        253 TLFTSPAK  260 (272)
T ss_pred             HHhcCCCc
Confidence            99865433

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=2.7e-41  Score=368.55  Aligned_cols=209  Identities=27%  Similarity=0.509  Sum_probs=180.8

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...+|++++
T Consensus         1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~   76 (220)
T cd03265           1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG   76 (220)
T ss_pred             CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence            578999999963   3699999999999999999999999999999999999999999999999988753 356788999


Q ss_pred             EEccccccCcc-cHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPALFAA-SIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~lf~g-TIreNl~~~~~--~~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      |+||++.+|.. |+++|+.++..  ..    .++++.++++..++.++....       +    ..||||||||++||||
T Consensus        77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~----~~LS~G~~qr~~la~a  145 (220)
T cd03265          77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-------V----KTYSGGMRRRLEIARS  145 (220)
T ss_pred             EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-------h----hhCCHHHHHHHHHHHH
Confidence            99999988874 99999975311  11    234567778888886654433       2    3699999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLM-R-GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~-~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ++.+|++|||||||++||+.+...+.+.|++.. + ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus       146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (220)
T cd03265         146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL  219 (220)
T ss_pred             HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence            999999999999999999999999999999875 3 7899999999998865 899999999999999988764

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=4.7e-41  Score=362.19  Aligned_cols=200  Identities=36%  Similarity=0.545  Sum_probs=181.6

Q ss_pred             EEEEeEEEECCCCCC--ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcc
Q 000856         1010 IELRHVDFAYPSRPD--VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~--~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1087 (1252)
                      |+++||+++|++...  .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||             +
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~   67 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S   67 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence            579999999964310  3699999999999999999999999999999999999999999999999             6


Q ss_pred             cEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 000856         1088 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 1167 (1252)
Q Consensus      1088 i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p 1167 (1252)
                      ++|+||+|.+|++|++||+.++. ..++++.+++++.+++.+++..+|.|+++.+.+.+..||+|||||++||||++.+|
T Consensus        68 i~~~~q~~~l~~~t~~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p  146 (204)
T cd03250          68 IAYVSQEPWIQNGTIRENILFGK-PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA  146 (204)
T ss_pred             EEEEecCchhccCcHHHHhccCC-CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999853 34566778888899999999999999999999999999999999999999999999


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHH-HHHHc-CCCeEEEEecCchhhhccCEEEEEeCCE
Q 000856         1168 AILLLDEATSALDAESECVLQEA-LERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGR 1223 (1252)
Q Consensus      1168 ~ILiLDEpTS~LD~~te~~i~~~-l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 1223 (1252)
                      +++||||||++||+++...+.+. +++.. +++|||++||+++.+..||++++|++|+
T Consensus       147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~  204 (204)
T cd03250         147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR  204 (204)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence            99999999999999999988874 56553 4689999999999998899999999985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-41  Score=391.03  Aligned_cols=220  Identities=38%  Similarity=0.600  Sum_probs=186.9

Q ss_pred             EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHH---Hh
Q 000856          365 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW---LR  440 (1252)
Q Consensus       365 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~  440 (1252)
                      |+++|++++|++.. +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...   +|
T Consensus         2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~   81 (343)
T PRK11153          2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR   81 (343)
T ss_pred             EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence            68999999997311 346999999999999999999999999999999999999999999999999998776543   46


Q ss_pred             hhceEEccCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000856          441 DQIGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA  517 (1252)
Q Consensus       441 ~~i~~v~Q~~~l~~-~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARa  517 (1252)
                      ++|+||+|++.+|+ .|++||+.++...  ....+...     .+.+.++.+  |+.......+.+||||||||++||||
T Consensus        82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra  154 (343)
T PRK11153         82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA  154 (343)
T ss_pred             cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence            78999999999886 5999999875321  12222111     123344444  66666677888999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          518 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       518 l~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |+.+|++|||||||++||+.+++.+.+.|+++.+  |+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~  231 (343)
T PRK11153        155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSH  231 (343)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999999999999998853  8999999999999876 899999999999999999998765

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.1e-41  Score=378.03  Aligned_cols=221  Identities=28%  Similarity=0.454  Sum_probs=191.3

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .++++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus        11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   87 (265)
T PRK10575         11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV   87 (265)
T ss_pred             eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence            5999999999963   3699999999999999999999999999999999999999999999999999888888889999


Q ss_pred             EEEccccccCc-ccHHHHhccCCC----------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 000856         1089 GLVQQEPALFA-ASIFDNIAYGKE----------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 1157 (1252)
Q Consensus      1089 ~~VpQd~~lf~-gTIreNl~~~~~----------~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1157 (1252)
                      +|+||++.++. .|+++|+.++..          ...++++.++++.+++.++....|           ..||||||||+
T Consensus        88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv  156 (265)
T PRK10575         88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA  156 (265)
T ss_pred             EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence            99999987665 499999986421          112346778888888866544433           36999999999


Q ss_pred             HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhh
Q 000856         1158 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1158 aLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      +|||||+.+|++|||||||++||+.+...+.+.|+++.  .++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus       157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~  236 (265)
T PRK10575        157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM  236 (265)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence            99999999999999999999999999999999999874  3799999999999985 58999999999999999999987


Q ss_pred             cCCCchhHHHH
Q 000856         1235 SRPDGAYSRLL 1245 (1252)
Q Consensus      1235 ~~~~g~y~~l~ 1245 (1252)
                      ..  ..+..++
T Consensus       237 ~~--~~~~~~~  245 (265)
T PRK10575        237 RG--ETLEQIY  245 (265)
T ss_pred             CH--HHHHHHh
Confidence            52  3344444

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=5e-41  Score=375.16  Aligned_cols=218  Identities=29%  Similarity=0.505  Sum_probs=186.6

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCC--------
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL-------- 1079 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~-------- 1079 (1252)
                      +.++++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...        
T Consensus         4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (257)
T PRK10619          4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK   80 (257)
T ss_pred             ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence            56999999999963   3699999999999999999999999999999999999999999999999988642        


Q ss_pred             -----CHHHHhcccEEEccccccCc-ccHHHHhccCC---CCC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCC
Q 000856         1080 -----NLKSLRLKIGLVQQEPALFA-ASIFDNIAYGK---EGA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERG 1146 (1252)
Q Consensus      1080 -----~~~~lR~~i~~VpQd~~lf~-gTIreNl~~~~---~~~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G 1146 (1252)
                           ....+|++++||||++.+|. .|++||+.++.   ...    .++++.++++..++.++..          ....
T Consensus        81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~  150 (257)
T PRK10619         81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP  150 (257)
T ss_pred             cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence                 13467889999999999997 59999997531   111    1345666777777755431          2234


Q ss_pred             CCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEE
Q 000856         1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRI 1224 (1252)
Q Consensus      1147 ~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~I 1224 (1252)
                      ..||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||||++|++|++
T Consensus       151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i  230 (257)
T PRK10619        151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI  230 (257)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence            5799999999999999999999999999999999999999999999875 48999999999999975 899999999999


Q ss_pred             EEecChhhhhcCCC
Q 000856         1225 VEQGSHSELVSRPD 1238 (1252)
Q Consensus      1225 ve~G~~~eLl~~~~ 1238 (1252)
                      ++.|+++++.+.+.
T Consensus       231 ~~~~~~~~~~~~~~  244 (257)
T PRK10619        231 EEEGAPEQLFGNPQ  244 (257)
T ss_pred             EEeCCHHHhhhCcc
Confidence            99999999986543

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-41  Score=375.40  Aligned_cols=221  Identities=31%  Similarity=0.496  Sum_probs=186.9

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--C---CCceEEECCcccCCC--CH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--P---TAGKVMIDGKDIRRL--NL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~--p---~~G~I~idG~di~~~--~~ 1081 (1252)
                      -++++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++  |   ++|+|.+||.++...  +.
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~   81 (252)
T PRK14239          5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT   81 (252)
T ss_pred             eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence            4899999999963   359999999999999999999999999999999999954  6   499999999998643  34


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCC---CCC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGK---EGA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~---~~~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      ..+|+.++||||++.+|+.|++||+.++.   +..    .++++.++++.+++.+.+..       ........||||||
T Consensus        82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~  154 (252)
T PRK14239         82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD-------RLHDSALGLSGGQQ  154 (252)
T ss_pred             HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHH-------HHhcCcccCCHHHH
Confidence            56788999999999999999999998642   111    13445667777776543322       12334467999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus       155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  234 (252)
T PRK14239        155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM  234 (252)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999998876799999999999875 5899999999999999999999


Q ss_pred             hcCCCc
Q 000856         1234 VSRPDG 1239 (1252)
Q Consensus      1234 l~~~~g 1239 (1252)
                      ++.+..
T Consensus       235 ~~~~~~  240 (252)
T PRK14239        235 FMNPKH  240 (252)
T ss_pred             HhCCCC
Confidence            876443

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.6e-41  Score=377.64  Aligned_cols=214  Identities=30%  Similarity=0.539  Sum_probs=186.3

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCC-HHHHhccc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-LKSLRLKI 1088 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~-~~~lR~~i 1088 (1252)
                      ++++|++++|+.  +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++...+ ...+++++
T Consensus         2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (274)
T PRK13644          2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV   79 (274)
T ss_pred             EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence            689999999953  235999999999999999999999999999999999999999999999999998765 46778899


Q ss_pred             EEEccccc--cCcccHHHHhccCCCC--CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 000856         1089 GLVQQEPA--LFAASIFDNIAYGKEG--AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 1160 (1252)
Q Consensus      1089 ~~VpQd~~--lf~gTIreNl~~~~~~--~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 1160 (1252)
                      +|+||+|.  ++..|+++|+.++...  .+    ++++.++++..++.++....           ...||||||||++||
T Consensus        80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~qrv~la  148 (274)
T PRK13644         80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS-----------PKTLSGGQGQCVALA  148 (274)
T ss_pred             EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------cccCCHHHHHHHHHH
Confidence            99999985  6778999999875321  22    34466667777776554332           347999999999999


Q ss_pred             HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1161 RAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1161 RALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      |||+++|+||||||||++||+.+...+++.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus       149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  225 (274)
T PRK13644        149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD  225 (274)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence            99999999999999999999999999999998875 48999999999999988999999999999999999998754

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=2.8e-41  Score=365.30  Aligned_cols=203  Identities=27%  Similarity=0.468  Sum_probs=179.1

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++||+++|++   .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...  ..+|++++
T Consensus         1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~   75 (208)
T cd03268           1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG   75 (208)
T ss_pred             CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence            478999999953   3699999999999999999999999999999999999999999999999998764  56788999


Q ss_pred             EEccccccC-cccHHHHhccCC--CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 000856         1090 LVQQEPALF-AASIFDNIAYGK--EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 1166 (1252)
Q Consensus      1090 ~VpQd~~lf-~gTIreNl~~~~--~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 1166 (1252)
                      |+||++.+| ..|++||+.++.  ...+++++.++++..++.+.....           ...||||||||++||||++++
T Consensus        76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~la~al~~~  144 (208)
T cd03268          76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKGFSLGMKQRLGIALALLGN  144 (208)
T ss_pred             EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------HhhCCHHHHHHHHHHHHHhcC
Confidence            999999877 579999997642  123567788888999887665432           246999999999999999999


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000856         1167 PAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1167 p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1228 (1252)
                      |++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence            99999999999999999999999999875 47899999999999864 8999999999998865

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.3e-41  Score=389.40  Aligned_cols=220  Identities=33%  Similarity=0.521  Sum_probs=191.2

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcc
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1087 (1252)
                      ..|+++|++++|++   .++|+|+||+|++||.++|+||||||||||+++|+|+.+|++|+|.+||.++.+.++  .|++
T Consensus        18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~   92 (377)
T PRK11607         18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP   92 (377)
T ss_pred             ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence            35999999999953   359999999999999999999999999999999999999999999999999987764  4678


Q ss_pred             cEEEccccccCcc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 000856         1088 IGLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 1160 (1252)
Q Consensus      1088 i~~VpQd~~lf~g-TIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 1160 (1252)
                      ++||+|++.+|.. |++||+.++..  ..+    .+++.++++..++.++.+..|           ..||||||||++||
T Consensus        93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLA  161 (377)
T PRK11607         93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALA  161 (377)
T ss_pred             EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHH
Confidence            9999999999965 99999997632  122    245667777778766554443           46999999999999


Q ss_pred             HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhhhhcCC
Q 000856         1161 RAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRP 1237 (1252)
Q Consensus      1161 RALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti-~~~DrI~vl~~G~Ive~G~~~eLl~~~ 1237 (1252)
                      |||+++|++|+||||||+||..+...+.+.|++..  .+.|+|+|||+++.+ ..||||++|++|++++.|+|+++..++
T Consensus       162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p  241 (377)
T PRK11607        162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP  241 (377)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence            99999999999999999999999999998887764  378999999999987 458999999999999999999999887


Q ss_pred             CchhHH
Q 000856         1238 DGAYSR 1243 (1252)
Q Consensus      1238 ~g~y~~ 1243 (1252)
                      ...|..
T Consensus       242 ~~~~~a  247 (377)
T PRK11607        242 TTRYSA  247 (377)
T ss_pred             ccHHHH
Confidence            765543

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.7e-41  Score=373.79  Aligned_cols=225  Identities=29%  Similarity=0.506  Sum_probs=189.8

Q ss_pred             cccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--C---CCceEEECCcccCCC--
Q 000856         1007 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--P---TAGKVMIDGKDIRRL-- 1079 (1252)
Q Consensus      1007 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~--p---~~G~I~idG~di~~~-- 1079 (1252)
                      ++.|+++|++++|++   .++|+|+||+|++||.+||+|+||||||||+++|+|+++  |   ++|+|.+||.++...  
T Consensus         2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~   78 (252)
T PRK14256          2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV   78 (252)
T ss_pred             CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence            356999999999963   359999999999999999999999999999999999986  4   689999999998653  


Q ss_pred             CHHHHhcccEEEccccccCc-ccHHHHhccCCC--C-CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 000856         1080 NLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--G-AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 1151 (1252)
Q Consensus      1080 ~~~~lR~~i~~VpQd~~lf~-gTIreNl~~~~~--~-~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSg 1151 (1252)
                      +...+|++++|+||++.+|. .|++||+.++..  . .+    ++++.++++..++.+++..+       .......|||
T Consensus        79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~  151 (252)
T PRK14256         79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-------LKSNAMELSG  151 (252)
T ss_pred             ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-------hhCCcCcCCH
Confidence            44567899999999999887 699999986421  1 11    23456777777776544321       2234567999


Q ss_pred             hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecCh
Q 000856         1152 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSH 1230 (1252)
Q Consensus      1152 GQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~ 1230 (1252)
                      |||||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|++|+|++.|++
T Consensus       152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~  231 (252)
T PRK14256        152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET  231 (252)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence            999999999999999999999999999999999999999999877789999999999985 5899999999999999999


Q ss_pred             hhhhcCCCchh
Q 000856         1231 SELVSRPDGAY 1241 (1252)
Q Consensus      1231 ~eLl~~~~g~y 1241 (1252)
                      +++...+...|
T Consensus       232 ~~~~~~~~~~~  242 (252)
T PRK14256        232 KKIFTTPEKKQ  242 (252)
T ss_pred             HHHHhCCCcHH
Confidence            99987644433

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=2.6e-41  Score=391.17  Aligned_cols=217  Identities=31%  Similarity=0.505  Sum_probs=184.8

Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhh
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ  442 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~  442 (1252)
                      ..++++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..  ++.
T Consensus        13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~   87 (375)
T PRK09452         13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRH   87 (375)
T ss_pred             ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCC
Confidence            35899999999974   3489999999999999999999999999999999999999999999999999776654  467


Q ss_pred             ceEEccCCCCchh-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-tv~~ni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~  519 (1252)
                      ++||+|++.+|+. ||+|||.|+....  ...+...     .+.+.++.+  |+.....+.+.+|||||||||+|||||+
T Consensus        88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~p~~LSgGq~QRVaLARaL~  160 (375)
T PRK09452         88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP-----RVMEALRMV--QLEEFAQRKPHQLSGGQQQRVAIARAVV  160 (375)
T ss_pred             EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence            9999999999976 9999999874311  1111111     112233333  5556667777899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       520 ~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      .+|++||||||||+||+.+++.+.+.|+++.+  |.|+|+|||+++++.. ||+|++|++|++++.|++++++.+
T Consensus       161 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~  235 (375)
T PRK09452        161 NKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE  235 (375)
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            99999999999999999999999999998853  8999999999999865 899999999999999999998765

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.3e-41  Score=374.56  Aligned_cols=227  Identities=33%  Similarity=0.530  Sum_probs=191.4

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCcccCCC--CH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRL--NL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-----~~G~I~idG~di~~~--~~ 1081 (1252)
                      -|+++||+++|++   .++|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.+||.++...  +.
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~   79 (250)
T PRK14262          3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV   79 (250)
T ss_pred             eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence            3899999999963   3699999999999999999999999999999999999984     899999999998653  34


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCCC---CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKE---GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~~---~~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      ..+|++++|+||++.+|..|++||+.++..   ..    .++++.++++..++.+.+..       .......+||||||
T Consensus        80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~Gq~  152 (250)
T PRK14262         80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTRLSGGQQ  152 (250)
T ss_pred             HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhhcCHHHH
Confidence            567889999999999999999999986421   11    23346667777777654322       12344567999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus       153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (250)
T PRK14262        153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI  232 (250)
T ss_pred             HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            999999999999999999999999999999999999999877899999999999875 5899999999999999999999


Q ss_pred             hcCCCchhHHHH
Q 000856         1234 VSRPDGAYSRLL 1245 (1252)
Q Consensus      1234 l~~~~g~y~~l~ 1245 (1252)
                      .+++...|...+
T Consensus       233 ~~~~~~~~~~~~  244 (250)
T PRK14262        233 VERPKNKLTEEY  244 (250)
T ss_pred             HhCCCChHHHHH
Confidence            876444455443

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=3.4e-41  Score=371.35  Aligned_cols=212  Identities=26%  Similarity=0.480  Sum_probs=180.5

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHH-hccc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLKI 1088 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~l-R~~i 1088 (1252)
                      ++++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |+.+
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   77 (232)
T cd03218           1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI   77 (232)
T ss_pred             CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence            478999999963   359999999999999999999999999999999999999999999999999988776553 5789


Q ss_pred             EEEccccccCcc-cHHHHhccCCC--CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 000856         1089 GLVQQEPALFAA-SIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161 (1252)
Q Consensus      1089 ~~VpQd~~lf~g-TIreNl~~~~~--~~~d----eei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 1161 (1252)
                      +|+||++.+|.+ |++||+.++..  ....    +++.++++..++.+           ........||||||||++|||
T Consensus        78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~  146 (232)
T cd03218          78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITH-----------LRKSKASSLSGGERRRVEIAR  146 (232)
T ss_pred             EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHHHH
Confidence            999999999986 99999986422  1121    23344455554433           233344679999999999999


Q ss_pred             HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhc
Q 000856         1162 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1162 ALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~ 1235 (1252)
                      |++.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus       147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  222 (232)
T cd03218         147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA  222 (232)
T ss_pred             HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence            9999999999999999999999999999998875 4789999999998775 589999999999999999999875

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=4.5e-41  Score=372.71  Aligned_cols=212  Identities=24%  Similarity=0.439  Sum_probs=183.6

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHH-Hhccc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS-LRLKI 1088 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~-lR~~i 1088 (1252)
                      |+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... .|+.+
T Consensus         3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (242)
T TIGR03411         3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI   79 (242)
T ss_pred             EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence            789999999963   36999999999999999999999999999999999999999999999999998877664 35679


Q ss_pred             EEEccccccCcc-cHHHHhccCCCC--------------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 000856         1089 GLVQQEPALFAA-SIFDNIAYGKEG--------------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 1153 (1252)
Q Consensus      1089 ~~VpQd~~lf~g-TIreNl~~~~~~--------------~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQ 1153 (1252)
                      +|+||++.+|.+ |++||+.++...              ..++++.++++..++.+.           .......|||||
T Consensus        80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Ge  148 (242)
T TIGR03411        80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE-----------ADRLAGLLSHGQ  148 (242)
T ss_pred             eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHH
Confidence            999999999986 999999874210              012345555666555432           223345799999


Q ss_pred             HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhh
Q 000856         1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 1232 (1252)
Q Consensus      1154 rQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~e 1232 (1252)
                      |||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus       149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~  228 (242)
T TIGR03411       149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ  228 (242)
T ss_pred             HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence            99999999999999999999999999999999999999998777899999999999865 89999999999999999999


Q ss_pred             hhc
Q 000856         1233 LVS 1235 (1252)
Q Consensus      1233 Ll~ 1235 (1252)
                      ++.
T Consensus       229 ~~~  231 (242)
T TIGR03411       229 VQA  231 (242)
T ss_pred             Hhc
Confidence            875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.8e-41  Score=372.46  Aligned_cols=224  Identities=35%  Similarity=0.598  Sum_probs=189.4

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCcccCC--CC
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--LN 1080 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-----~~G~I~idG~di~~--~~ 1080 (1252)
                      +.|+++||+++|++   .++++|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.+||.++..  .+
T Consensus         2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~   78 (250)
T PRK14240          2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID   78 (250)
T ss_pred             CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            46899999999963   3599999999999999999999999999999999999863     69999999999874  45


Q ss_pred             HHHHhcccEEEccccccCcccHHHHhccCCC--CC-----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 000856         1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 1153 (1252)
Q Consensus      1081 ~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~~-----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQ 1153 (1252)
                      ...+|++++|+||++.+|+.|+++|+.++..  ..     .++++.++++.+++.+.+..       ........|||||
T Consensus        79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~  151 (250)
T PRK14240         79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALGLSGGQ  151 (250)
T ss_pred             hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCCCCHHH
Confidence            5678899999999999999999999986421  11     23455666777776543321       1233445799999


Q ss_pred             HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhh
Q 000856         1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 1232 (1252)
Q Consensus      1154 rQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~e 1232 (1252)
                      |||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus       152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~  231 (250)
T PRK14240        152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD  231 (250)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999988678899999999998855 89999999999999999999


Q ss_pred             hhcCCCchh
Q 000856         1233 LVSRPDGAY 1241 (1252)
Q Consensus      1233 Ll~~~~g~y 1241 (1252)
                      +...+...+
T Consensus       232 ~~~~~~~~~  240 (250)
T PRK14240        232 LFTNPKDKR  240 (250)
T ss_pred             HHhCCCChH
Confidence            986644443

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.9e-41  Score=380.68  Aligned_cols=220  Identities=34%  Similarity=0.576  Sum_probs=186.1

Q ss_pred             EEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCC----CHHH
Q 000856          365 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL----QLRW  438 (1252)
Q Consensus       365 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~----~~~~  438 (1252)
                      ++++|++|+|++..  ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...    +...
T Consensus         3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (286)
T PRK13646          3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP   82 (286)
T ss_pred             EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            78999999996422  23599999999999999999999999999999999999999999999999998653    3456


Q ss_pred             HhhhceEEccCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccc-cccCCCCCCChHHHHHHH
Q 000856          439 LRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYST-QVGERGVQLSGGQKQRIA  513 (1252)
Q Consensus       439 ~~~~i~~v~Q~~--~l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g~~LSgGqkqRv~  513 (1252)
                      +|++|+||+|+|  .+|..|++||+.++...  .+.++...     .+.+.+..+  |+++ ..+..+.+||||||||++
T Consensus        83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~  155 (286)
T PRK13646         83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKN-----YAHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA  155 (286)
T ss_pred             HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence            788999999997  57888999999986422  12222221     123344444  7763 556788999999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          514 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       514 lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      |||||+.+|+++||||||++||+.++..+.+.++++.  .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus       156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  235 (286)
T PRK13646        156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK  235 (286)
T ss_pred             HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999999999999999999999884  48999999999999865 89999999999999999988765


Q ss_pred             c
Q 000856          591 K  591 (1252)
Q Consensus       591 ~  591 (1252)
                      .
T Consensus       236 ~  236 (286)
T PRK13646        236 D  236 (286)
T ss_pred             C
Confidence            4

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.5e-41  Score=376.35  Aligned_cols=216  Identities=30%  Similarity=0.482  Sum_probs=188.0

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+++
T Consensus         7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   85 (269)
T PRK13648          7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI   85 (269)
T ss_pred             eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence            48999999999642 23589999999999999999999999999999999999999999999999999888888899999


Q ss_pred             EEEccccc--cCcccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 000856         1089 GLVQQEPA--LFAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 1160 (1252)
Q Consensus      1089 ~~VpQd~~--lf~gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 1160 (1252)
                      +|+||+|.  ++..|+++|+.++..  ...    ++++.++++..++.++...           ...+||||||||++||
T Consensus        86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la  154 (269)
T PRK13648         86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNALSGGQKQRVAIA  154 (269)
T ss_pred             eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHH
Confidence            99999984  556789999976522  112    2355667777777554332           2357999999999999


Q ss_pred             HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1161 RAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1161 RALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      ||++++|++|||||||++||+.+...+.+.|++..+  ++|+|++||+++.+..||||++|++|++++.|+++++.+.
T Consensus       155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  232 (269)
T PRK13648        155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH  232 (269)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence            999999999999999999999999999999998753  7899999999999888999999999999999999998764

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-41  Score=382.07  Aligned_cols=220  Identities=26%  Similarity=0.485  Sum_probs=183.2

Q ss_pred             EEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccC---------
Q 000856          365 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT---------  433 (1252)
Q Consensus       365 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~---------  433 (1252)
                      |+++|++++|++..  ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..         
T Consensus         3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (305)
T PRK13651          3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK   82 (305)
T ss_pred             EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence            78999999997432  1358999999999999999999999999999999999999999999999876532         


Q ss_pred             ---------------CCHHHHhhhceEEccCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCcc
Q 000856          434 ---------------LQLRWLRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS  494 (1252)
Q Consensus       434 ---------------~~~~~~~~~i~~v~Q~~--~l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~  494 (1252)
                                     .+...+++.|+||+|+|  .+|..||+|||.|+...  ...++....     +.+.++.+  |++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~  155 (305)
T PRK13651         83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELV--GLD  155 (305)
T ss_pred             cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCC
Confidence                           13356778899999986  57788999999987432  222222211     12333443  664


Q ss_pred             -ccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEE
Q 000856          495 -TQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTV  571 (1252)
Q Consensus       495 -~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i  571 (1252)
                       ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. .|+|||+|||+++.+.. ||||
T Consensus       156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv  235 (305)
T PRK13651        156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT  235 (305)
T ss_pred             hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence             45677888999999999999999999999999999999999999999999999885 48999999999998755 8999


Q ss_pred             EEEeCCEEEEecChHHHHhc
Q 000856          572 AVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       572 ~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      ++|++|++++.|+++++.+.
T Consensus       236 ~vl~~G~i~~~g~~~~~~~~  255 (305)
T PRK13651        236 IFFKDGKIIKDGDTYDILSD  255 (305)
T ss_pred             EEEECCEEEEECCHHHHhcC
Confidence            99999999999999988654

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.5e-41  Score=381.42  Aligned_cols=220  Identities=31%  Similarity=0.539  Sum_probs=183.8

Q ss_pred             EEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccC----CCHHH
Q 000856          365 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT----LQLRW  438 (1252)
Q Consensus       365 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~----~~~~~  438 (1252)
                      ++++|++|+|++..  ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..    .....
T Consensus         3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (290)
T PRK13634          3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP   82 (290)
T ss_pred             EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            78999999997422  1459999999999999999999999999999999999999999999999999853    23456


Q ss_pred             HhhhceEEccCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCcc-ccccCCCCCCChHHHHHHH
Q 000856          439 LRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIA  513 (1252)
Q Consensus       439 ~~~~i~~v~Q~~--~l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~LSgGqkqRv~  513 (1252)
                      +++.|+||+|+|  .+++.||+||+.++...  .+.++...     .+.+.++.+  |+. ......+.+||||||||++
T Consensus        83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~  155 (290)
T PRK13634         83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQ-----KAREMIELV--GLPEELLARSPFELSGGQMRRVA  155 (290)
T ss_pred             HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence            777899999998  57888999999986421  12222211     112333333  554 3346778899999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          514 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       514 lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      |||||+.+|+++||||||++||+.++..+.+.|+++.  .|.|||++||+++.+.. ||||++|++|++++.|+++++.+
T Consensus       156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~  235 (290)
T PRK13634        156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA  235 (290)
T ss_pred             HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            9999999999999999999999999999999999885  38999999999999865 89999999999999999988865


Q ss_pred             c
Q 000856          591 K  591 (1252)
Q Consensus       591 ~  591 (1252)
                      .
T Consensus       236 ~  236 (290)
T PRK13634        236 D  236 (290)
T ss_pred             C
Confidence            4

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=4e-41  Score=367.90  Aligned_cols=205  Identities=28%  Similarity=0.488  Sum_probs=174.3

Q ss_pred             EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHH---Hh
Q 000856         1010 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LR 1085 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~---lR 1085 (1252)
                      |+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+...   +|
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR   81 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence            68999999996321 136999999999999999999999999999999999999999999999999998877654   34


Q ss_pred             -cccEEEccccccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 000856         1086 -LKIGLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 1157 (1252)
Q Consensus      1086 -~~i~~VpQd~~lf~-gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1157 (1252)
                       ++++|+||++.+|. .|++||+.++..  ...    ++++.++++..++.+....           ....||||||||+
T Consensus        82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv  150 (221)
T TIGR02211        82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH-----------RPSELSGGERQRV  150 (221)
T ss_pred             HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHH
Confidence             68999999999885 699999976311  111    2345666666666544332           2357999999999


Q ss_pred             HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEeCCEEE
Q 000856         1158 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIV 1225 (1252)
Q Consensus      1158 aLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~~G~Iv 1225 (1252)
                      +||||++++|+||||||||++||+.+...+.+.|++..  .++|+|+|||+++.+..+|+|++|++|+++
T Consensus       151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF  220 (221)
T ss_pred             HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence            99999999999999999999999999999999999875  378999999999999889999999999986

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=3.3e-41  Score=388.80  Aligned_cols=215  Identities=33%  Similarity=0.522  Sum_probs=184.3

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      |+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.  .+++++
T Consensus         3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~   77 (353)
T PRK10851          3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG   77 (353)
T ss_pred             EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence            789999999974   358999999999999999999999999999999999999999999999999876543  356799


Q ss_pred             EEccCCCCchh-cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000856          445 LVNQEPALFAT-TILENILYGKPE------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA  517 (1252)
Q Consensus       445 ~v~Q~~~l~~~-tv~~ni~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARa  517 (1252)
                      ||+|++.+|+. |++||+.|+...      ....+...     .+.+.++.+  |+.....+.+.+|||||||||+||||
T Consensus        78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalArA  150 (353)
T PRK10851         78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALARA  150 (353)
T ss_pred             EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence            99999999975 999999987431      11111111     122334444  56556677888999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          518 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       518 l~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |+.+|++|||||||++||+.+++.+.+.|+++.+  +.|+|+|||+++++.. ||+|++|++|++++.|+++++..+
T Consensus       151 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~  227 (353)
T PRK10851        151 LAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE  227 (353)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999999999999998853  7899999999999866 899999999999999999998765

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=6e-41  Score=373.60  Aligned_cols=218  Identities=33%  Similarity=0.519  Sum_probs=183.6

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCC--------H
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN--------L 1081 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~--------~ 1081 (1252)
                      ++++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+        .
T Consensus         4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (250)
T PRK11264          4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI   80 (250)
T ss_pred             EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence            899999999963   35999999999999999999999999999999999999999999999999987542        3


Q ss_pred             HHHhcccEEEccccccCc-ccHHHHhccCC---CCCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 000856         1082 KSLRLKIGLVQQEPALFA-ASIFDNIAYGK---EGATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 1153 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~-gTIreNl~~~~---~~~~d----eei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQ 1153 (1252)
                      ..+|++++||||++.+|. .|++||+.++.   .....    +.+.++++..++.+..           ......|||||
T Consensus        81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~Gq  149 (250)
T PRK11264         81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-----------TSYPRRLSGGQ  149 (250)
T ss_pred             HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----------hCChhhCChHH
Confidence            567889999999998885 69999997531   11222    2344555555554332           23345799999


Q ss_pred             HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChh
Q 000856         1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHS 1231 (1252)
Q Consensus      1154 rQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~ 1231 (1252)
                      |||++|||||+.+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus       150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~  229 (250)
T PRK11264        150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK  229 (250)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999999875 47899999999999865 8999999999999999999


Q ss_pred             hhhcCCCchh
Q 000856         1232 ELVSRPDGAY 1241 (1252)
Q Consensus      1232 eLl~~~~g~y 1241 (1252)
                      ++.+.+.-.|
T Consensus       230 ~~~~~~~~~~  239 (250)
T PRK11264        230 ALFADPQQPR  239 (250)
T ss_pred             HHhcCCCCHH
Confidence            9876543333

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=7.3e-41  Score=370.31  Aligned_cols=213  Identities=31%  Similarity=0.511  Sum_probs=183.0

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCC--CHHHHhcc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL--NLKSLRLK 1087 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~--~~~~lR~~ 1087 (1252)
                      ++++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...  +...+|++
T Consensus         2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   78 (240)
T PRK09493          2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE   78 (240)
T ss_pred             EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence            689999999963   3599999999999999999999999999999999999999999999999998764  34567889


Q ss_pred             cEEEccccccCc-ccHHHHhccCCC---CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 000856         1088 IGLVQQEPALFA-ASIFDNIAYGKE---GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 1159 (1252)
Q Consensus      1088 i~~VpQd~~lf~-gTIreNl~~~~~---~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 1159 (1252)
                      ++|+||++.+|. .|+++|+.++..   ..+    ++++.++++..++.+....           ....||||||||++|
T Consensus        79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~l  147 (240)
T PRK09493         79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHH-----------YPSELSGGQQQRVAI  147 (240)
T ss_pred             eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhc-----------ChhhcCHHHHHHHHH
Confidence            999999998885 699999986421   112    2334556666666544332           335799999999999


Q ss_pred             HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcC
Q 000856         1160 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1160 ARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      |||++++|++|+|||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus       148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  226 (240)
T PRK09493        148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN  226 (240)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence            999999999999999999999999999999998875 47899999999999854 899999999999999999998765

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=3.4e-41  Score=366.21  Aligned_cols=203  Identities=35%  Similarity=0.610  Sum_probs=175.3

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++|++++|++   .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+..  +++++
T Consensus         1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~   75 (213)
T cd03301           1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA   75 (213)
T ss_pred             CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence            478999999963   3699999999999999999999999999999999999999999999999998766543  46899


Q ss_pred             EEccccccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~lf~-gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      |+||++.+|. .|++||+.++..  ..+    ++++.++++..++.++....|           ..||||||||++||||
T Consensus        76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qr~~lara  144 (213)
T cd03301          76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQLSGGQRQRVALGRA  144 (213)
T ss_pred             EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hhCCHHHHHHHHHHHH
Confidence            9999999885 699999986421  112    234566677777766544332           4699999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1228 (1252)
                      ++++|++|||||||++||+.+...+.+.|++..  .++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus       145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            999999999999999999999999999999875  37899999999998865 8999999999999876

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=4.6e-41  Score=353.55  Aligned_cols=178  Identities=34%  Similarity=0.642  Sum_probs=165.5

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++|++++|++. +.++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... ...+|+.++
T Consensus         1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~   78 (178)
T cd03247           1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS   78 (178)
T ss_pred             CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence            5789999999643 23599999999999999999999999999999999999999999999999988766 667889999


Q ss_pred             EEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 000856         1090 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 1169 (1252)
Q Consensus      1090 ~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~I 1169 (1252)
                      |+||++.+|+.|++||+                                       ...||||||||++||||++++|++
T Consensus        79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~  119 (178)
T cd03247          79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI  119 (178)
T ss_pred             EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999998                                       346999999999999999999999


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCEEEEec
Q 000856         1170 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1170 LiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~G 1228 (1252)
                      |||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus       120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG  178 (178)
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence            99999999999999999999999887789999999999999889999999999998765

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-40  Score=374.34  Aligned_cols=223  Identities=29%  Similarity=0.510  Sum_probs=187.0

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCcccCC--CCH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~-----p~~G~I~idG~di~~--~~~ 1081 (1252)
                      -++++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.+||.++..  .+.
T Consensus        24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~  100 (271)
T PRK14238         24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV  100 (271)
T ss_pred             EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence            5999999999963   359999999999999999999999999999999999997     699999999999853  455


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCCC--CCCH-----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GATE-----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~~~d-----eei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      ..+|++++|+||++.+|..|++||+.++..  +.++     +.+.++++..++.+.+       .......+..||||||
T Consensus       101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~~LSgGe~  173 (271)
T PRK14238        101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-------KDRLHDNAYGLSGGQQ  173 (271)
T ss_pred             HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-------HHHHhcCcccCCHHHH
Confidence            678899999999999999999999986421  1221     2234445555443222       2223345567999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~  253 (271)
T PRK14238        174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI  253 (271)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998778999999999999864 899999999999999999999


Q ss_pred             hcCCCchh
Q 000856         1234 VSRPDGAY 1241 (1252)
Q Consensus      1234 l~~~~g~y 1241 (1252)
                      .+.+...|
T Consensus       254 ~~~~~~~~  261 (271)
T PRK14238        254 FSNPSDKR  261 (271)
T ss_pred             HcCCCCHH
Confidence            87644333

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-40  Score=375.79  Aligned_cols=221  Identities=33%  Similarity=0.563  Sum_probs=188.5

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCcccCC--CC
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LN 1080 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~-----p~~G~I~idG~di~~--~~ 1080 (1252)
                      ..|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.++|.++.+  .+
T Consensus        38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~  114 (285)
T PRK14254         38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD  114 (285)
T ss_pred             ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence            35999999999963   359999999999999999999999999999999999997     689999999999864  34


Q ss_pred             HHHHhcccEEEccccccCcccHHHHhccCC-----CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 000856         1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGK-----EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 1155 (1252)
Q Consensus      1081 ~~~lR~~i~~VpQd~~lf~gTIreNl~~~~-----~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1155 (1252)
                      ...+|++++||||++.+|..|++||+.++.     +...++++.++++..++...+...       .......|||||||
T Consensus       115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LSgGe~q  187 (285)
T PRK14254        115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQ-------LDSSGLDLSGGQQQ  187 (285)
T ss_pred             hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHH-------HhCCcccCCHHHHH
Confidence            567889999999999999899999998642     111245677788888775433221       22344579999999


Q ss_pred             HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEE-EEeCCEEEEecChhhh
Q 000856         1156 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIG-VVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1156 rlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~-vl~~G~Ive~G~~~eL 1233 (1252)
                      |++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. |||++ +|++|+|++.|+++++
T Consensus       188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~  267 (285)
T PRK14254        188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI  267 (285)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999998767899999999999865 89975 5799999999999999


Q ss_pred             hcCCC
Q 000856         1234 VSRPD 1238 (1252)
Q Consensus      1234 l~~~~ 1238 (1252)
                      .+++.
T Consensus       268 ~~~~~  272 (285)
T PRK14254        268 FENPE  272 (285)
T ss_pred             HhCcC
Confidence            86533

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.2e-41  Score=372.44  Aligned_cols=217  Identities=31%  Similarity=0.461  Sum_probs=183.4

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC---CCCcEEEECCccccCCCHHHHhh
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD---PNAGHVLLDNVDIKTLQLRWLRD  441 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~~  441 (1252)
                      |+++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++   |++|+|.++|+++.+.+...+++
T Consensus         3 ~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~   79 (246)
T PRK14269          3 AKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK   79 (246)
T ss_pred             eeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence            789999999974   358999999999999999999999999999999999984   69999999999998877777888


Q ss_pred             hceEEccCCCCchhcHHHHHhcCCCCCC--------HHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHH
Q 000856          442 QIGLVNQEPALFATTILENILYGKPEAT--------MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIA  513 (1252)
Q Consensus       442 ~i~~v~Q~~~l~~~tv~~ni~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~  513 (1252)
                      .++|++|++.+|+.|++||+.++.....        .+++...++..++.++       +.+...+.+.+||||||||++
T Consensus        80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~qrv~  152 (246)
T PRK14269         80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEE-------VKDKLKQNALALSGGQQQRLC  152 (246)
T ss_pred             hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChh-------hhHHhcCCcccCCHHHHHHHH
Confidence            9999999999998999999987531100        1112222222222111       123456678899999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          514 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       514 lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |||||+++|+++||||||++||+.++..+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus       153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  231 (246)
T PRK14269        153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN  231 (246)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence            999999999999999999999999999999999998778999999999999865 899999999999999999988653

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=3.1e-41  Score=368.12  Aligned_cols=205  Identities=38%  Similarity=0.570  Sum_probs=176.3

Q ss_pred             EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1010 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      |+++|++++|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..     +++++
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i   75 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR   75 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence            47899999996311 1469999999999999999999999999999999999999999999999998863     46789


Q ss_pred             EEEccccccCc-ccHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 000856         1089 GLVQQEPALFA-ASIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161 (1252)
Q Consensus      1089 ~~VpQd~~lf~-gTIreNl~~~~~--~~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 1161 (1252)
                      +||||++.+|. .|++||+.++..  ..    .++++.++++..++.++....|           ..||||||||++|||
T Consensus        76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~  144 (220)
T cd03293          76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALAR  144 (220)
T ss_pred             EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHH
Confidence            99999999887 799999976421  11    2345677788888766554433           469999999999999


Q ss_pred             HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEe--CCEEEEecCh
Q 000856         1162 AVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQ--DGRIVEQGSH 1230 (1252)
Q Consensus      1162 ALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~--~G~Ive~G~~ 1230 (1252)
                      ||+++|++|||||||++||+.+...+.+.|++..  .++|+|+|||+++.+. .||+|++|+  +|++++.++.
T Consensus       145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  218 (220)
T cd03293         145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV  218 (220)
T ss_pred             HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence            9999999999999999999999999999999874  3789999999999875 589999999  7999998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.5e-41  Score=370.70  Aligned_cols=213  Identities=30%  Similarity=0.484  Sum_probs=181.2

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccC------CCCHHH
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR------RLNLKS 1083 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~------~~~~~~ 1083 (1252)
                      ++++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.      ..+...
T Consensus         3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (242)
T PRK11124          3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE   79 (242)
T ss_pred             EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence            789999999963   35999999999999999999999999999999999999999999999999873      123456


Q ss_pred             HhcccEEEccccccCcc-cHHHHhccCC---CCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 000856         1084 LRLKIGLVQQEPALFAA-SIFDNIAYGK---EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 1155 (1252)
Q Consensus      1084 lR~~i~~VpQd~~lf~g-TIreNl~~~~---~~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1155 (1252)
                      +|++++|+||++.+|.+ |++||+.++.   ....    .+++.++++..++.++....           ...|||||||
T Consensus        80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~LS~G~~q  148 (242)
T PRK11124         80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRF-----------PLHLSGGQQQ  148 (242)
T ss_pred             HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHH
Confidence            78899999999999864 9999996421   1112    23345556666665544333           3579999999


Q ss_pred             HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000856         1156 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1156 rlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      |++||||++++|++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  228 (242)
T PRK11124        149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence            9999999999999999999999999999999999999875 47999999999999864 899999999999999999988


Q ss_pred             hcC
Q 000856         1234 VSR 1236 (1252)
Q Consensus      1234 l~~ 1236 (1252)
                      .+.
T Consensus       229 ~~~  231 (242)
T PRK11124        229 TQP  231 (242)
T ss_pred             cCc
Confidence            654

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.2e-41  Score=386.41  Aligned_cols=210  Identities=31%  Similarity=0.493  Sum_probs=181.0

Q ss_pred             ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCc----ccCCCCHHHHh----cccEEEccccc
Q 000856         1025 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK----DIRRLNLKSLR----LKIGLVQQEPA 1096 (1252)
Q Consensus      1025 ~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~----di~~~~~~~lR----~~i~~VpQd~~ 1096 (1252)
                      ..+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||.    |+...+...+|    ++++||+|++.
T Consensus        37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~  116 (382)
T TIGR03415        37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA  116 (382)
T ss_pred             EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence            35899999999999999999999999999999999999999999999995    67777665543    58999999999


Q ss_pred             cCc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 000856         1097 LFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 1169 (1252)
Q Consensus      1097 lf~-gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~I 1169 (1252)
                      +|+ .|++||+.++..  ..+    .+.+.++++.+++.++....|           .+||||||||++|||||+++|+|
T Consensus       117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~I  185 (382)
T TIGR03415       117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADI  185 (382)
T ss_pred             CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCE
Confidence            997 799999987531  122    245677888888876654433           46999999999999999999999


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhhhhcCCCchhHHHH
Q 000856         1170 LLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 1245 (1252)
Q Consensus      1170 LiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti-~~~DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~l~ 1245 (1252)
                      ||||||||+||+.+...+++.|.++.+  ++|+|+|||+++.+ +.||||++|++|++++.|++++++.++...|.+.+
T Consensus       186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~  264 (382)
T TIGR03415       186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADF  264 (382)
T ss_pred             EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHHHH
Confidence            999999999999999999999998753  78999999999987 55899999999999999999999987666565443

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.7e-41  Score=376.84  Aligned_cols=216  Identities=29%  Similarity=0.526  Sum_probs=182.4

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .++++|++++|++  ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus         4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i   81 (274)
T PRK13647          4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV   81 (274)
T ss_pred             eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence            4899999999963  23589999999999999999999999999999999999999999999999999877777888899


Q ss_pred             eEEccCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000856          444 GLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       444 ~~v~Q~~--~l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~  519 (1252)
                      +|++|+|  .++..|++||+.++...  ....+...     .+.+.++.+  |+.........+||||||||++|||||+
T Consensus        82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgG~~qrv~laraL~  154 (274)
T PRK13647         82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVER-----RVEEALKAV--RMWDFRDKPPYHLSYGQKKRVAIAGVLA  154 (274)
T ss_pred             EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHC--CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence            9999998  56778999999986321  11111111     112223333  4444456667799999999999999999


Q ss_pred             cCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       520 ~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      .+|++|||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  225 (274)
T PRK13647        155 MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL  225 (274)
T ss_pred             cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence            9999999999999999999999999999885 48999999999999855 899999999999999998654

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=1.1e-40  Score=373.67  Aligned_cols=225  Identities=30%  Similarity=0.440  Sum_probs=186.0

Q ss_pred             EEEEeEEEECCCC------CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHH
Q 000856         1010 IELRHVDFAYPSR------PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 1083 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~------~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~ 1083 (1252)
                      |+++||+++|+..      .+.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...
T Consensus         3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~   82 (265)
T TIGR02769         3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ   82 (265)
T ss_pred             EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence            7899999999631      1346999999999999999999999999999999999999999999999999998776543


Q ss_pred             ---HhcccEEEccccc--cC-cccHHHHhccCCC---C----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 000856         1084 ---LRLKIGLVQQEPA--LF-AASIFDNIAYGKE---G----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 1150 (1252)
Q Consensus      1084 ---lR~~i~~VpQd~~--lf-~gTIreNl~~~~~---~----~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LS 1150 (1252)
                         +|+.++|+||++.  ++ ..|++||+.++..   .    ..++++.++++..++.+..          .......||
T Consensus        83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~~LS  152 (265)
T TIGR02769        83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSED----------ADKLPRQLS  152 (265)
T ss_pred             HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhh----------hhCChhhCC
Confidence               6788999999983  44 4799999964211   1    1234556667776664211          123345799


Q ss_pred             hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEe
Q 000856         1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQ 1227 (1252)
Q Consensus      1151 gGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~ 1227 (1252)
                      ||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+  ++|+|+|||+++.+. .||++++|++|++++.
T Consensus       153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  232 (265)
T TIGR02769       153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE  232 (265)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence            9999999999999999999999999999999999999999998753  789999999999986 4899999999999999


Q ss_pred             cChhhhhcCCCchhHHH
Q 000856         1228 GSHSELVSRPDGAYSRL 1244 (1252)
Q Consensus      1228 G~~~eLl~~~~g~y~~l 1244 (1252)
                      |++++++...+..++++
T Consensus       233 g~~~~~~~~~~~~~~~~  249 (265)
T TIGR02769       233 CDVAQLLSFKHPAGRNL  249 (265)
T ss_pred             CCHHHHcCCCCHHHHHH
Confidence            99999987433334444

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-40  Score=372.05  Aligned_cols=228  Identities=28%  Similarity=0.507  Sum_probs=192.0

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCcccCCC--CH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRL--NL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-----~~G~I~idG~di~~~--~~ 1081 (1252)
                      -|+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+.+|     ++|+|.+||+++...  +.
T Consensus         6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   82 (253)
T PRK14261          6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV   82 (253)
T ss_pred             eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence            4899999999963   3599999999999999999999999999999999999763     489999999999876  45


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCCC--C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~-----~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      ...|+.++|+||++.+|+.|++||+.++..  .     ..++.+.++++.+++.+.+.       +.....+..||||||
T Consensus        83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~  155 (253)
T PRK14261         83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQ  155 (253)
T ss_pred             hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHH
Confidence            677889999999999999999999987521  1     11234566666666644332       223445567999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus       156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  235 (253)
T PRK14261        156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI  235 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence            999999999999999999999999999999999999998877789999999999986 5899999999999999999999


Q ss_pred             hcCCCchhHHHHH
Q 000856         1234 VSRPDGAYSRLLQ 1246 (1252)
Q Consensus      1234 l~~~~g~y~~l~~ 1246 (1252)
                      .+++...+.+.+.
T Consensus       236 ~~~~~~~~~~~~~  248 (253)
T PRK14261        236 FENPHEELTENYI  248 (253)
T ss_pred             HhCCCcHHHHHHh
Confidence            8765444555443

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=4.2e-41  Score=382.61  Aligned_cols=218  Identities=27%  Similarity=0.461  Sum_probs=183.1

Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhh
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ  442 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~  442 (1252)
                      ..++++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++
T Consensus         6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~   81 (306)
T PRK13537          6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQR   81 (306)
T ss_pred             ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhc
Confidence            35899999999963   45999999999999999999999999999999999999999999999999987644 356788


Q ss_pred             ceEEccCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000856          443 IGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       443 i~~v~Q~~~l~~-~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~  519 (1252)
                      ||||||++.++. .|++||+.+....  ....+....     +.+.++.+  |+.........+||||||||++|||||+
T Consensus        82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~  154 (306)
T PRK13537         82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFA--KLENKADAKVGELSGGMKRRLTLARALV  154 (306)
T ss_pred             EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence            999999999886 4999999853211  112222111     12233333  4444455666799999999999999999


Q ss_pred             cCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       520 ~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      .+|+++||||||++||+.+++.+++.|+++. +|+|+|++||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus       155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  228 (306)
T PRK13537        155 NDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES  228 (306)
T ss_pred             CCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence            9999999999999999999999999999985 48999999999999976 899999999999999999998654

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.8e-41  Score=373.17  Aligned_cols=222  Identities=26%  Similarity=0.467  Sum_probs=191.7

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      ++++|++++|++   .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus         3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (255)
T PRK11231          3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA   79 (255)
T ss_pred             EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence            789999999963   36999999999999999999999999999999999999999999999999998888888888999


Q ss_pred             EEccccccCcc-cHHHHhccCCC----------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 000856         1090 LVQQEPALFAA-SIFDNIAYGKE----------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 1158 (1252)
Q Consensus      1090 ~VpQd~~lf~g-TIreNl~~~~~----------~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1158 (1252)
                      |+||++.+|.+ |++||+.++..          ...++++.++++..++.++....           ...||||||||++
T Consensus        80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~  148 (255)
T PRK11231         80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----------LTDLSGGQRQRAF  148 (255)
T ss_pred             EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----------cccCCHHHHHHHH
Confidence            99999998876 99999987521          11234566777777776544332           3469999999999


Q ss_pred             HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1159 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1159 LARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      ||||++++|++|||||||++||+++...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.. 
T Consensus       149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~-  227 (255)
T PRK11231        149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT-  227 (255)
T ss_pred             HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC-
Confidence            9999999999999999999999999999999998875 4789999999999985 589999999999999999999875 


Q ss_pred             CCchhHHHHHH
Q 000856         1237 PDGAYSRLLQL 1247 (1252)
Q Consensus      1237 ~~g~y~~l~~~ 1247 (1252)
                       ...+.+.+..
T Consensus       228 -~~~~~~~~~~  237 (255)
T PRK11231        228 -PGLLRTVFDV  237 (255)
T ss_pred             -HHHHHHHhCC
Confidence             3445555543

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=6.3e-41  Score=371.66  Aligned_cols=221  Identities=35%  Similarity=0.562  Sum_probs=182.8

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCC---HHHHhh
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ---LRWLRD  441 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~---~~~~~~  441 (1252)
                      ++++|++++|++  +..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+   ...+++
T Consensus         1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   78 (241)
T cd03256           1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR   78 (241)
T ss_pred             CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence            468999999964  135899999999999999999999999999999999999999999999999987765   445677


Q ss_pred             hceEEccCCCCch-hcHHHHHhcCCCCCC--HHHH---HHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 000856          442 QIGLVNQEPALFA-TTILENILYGKPEAT--MAEV---EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA  515 (1252)
Q Consensus       442 ~i~~v~Q~~~l~~-~tv~~ni~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lA  515 (1252)
                      .++|++|++.+|. .|++||+.++.....  ....   ........+.+.++.+  |+....+..+.+||||||||++||
T Consensus        79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la  156 (241)
T cd03256          79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIA  156 (241)
T ss_pred             ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHH
Confidence            8999999998886 599999987532110  0000   0000111122344444  566666778889999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHH
Q 000856          516 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI  589 (1252)
Q Consensus       516 Ral~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~  589 (1252)
                      |||+.+|+++||||||++||+.+++.+.+.|+++.  .|+|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  233 (241)
T cd03256         157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT  233 (241)
T ss_pred             HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence            99999999999999999999999999999999875  38999999999999985 8999999999999999988863

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=9.9e-41  Score=369.80  Aligned_cols=204  Identities=32%  Similarity=0.475  Sum_probs=179.4

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .|+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.     .+|+++
T Consensus        12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i   83 (257)
T PRK11247         12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT   83 (257)
T ss_pred             cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence            5999999999963   35999999999999999999999999999999999999999999999998763     467889


Q ss_pred             EEEccccccCc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCC
Q 000856         1089 GLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP 1167 (1252)
Q Consensus      1089 ~~VpQd~~lf~-gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p 1167 (1252)
                      +|+||++.+|. .|++||+.++.....++++.++++..++.++...           ....||||||||++|||||+++|
T Consensus        84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGqkqrl~laraL~~~p  152 (257)
T PRK11247         84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANE-----------WPAALSGGQKQRVALARALIHRP  152 (257)
T ss_pred             EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHhcCC
Confidence            99999999887 6999999875332235667788888887655433           23579999999999999999999


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChh
Q 000856         1168 AILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHS 1231 (1252)
Q Consensus      1168 ~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~ 1231 (1252)
                      ++|||||||++||+.+...+.+.|++..  .++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus       153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence            9999999999999999999999998864  3789999999999875 58999999999999988764

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.9e-41  Score=373.32  Aligned_cols=222  Identities=31%  Similarity=0.492  Sum_probs=189.0

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCcccCC--CC
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--LN 1080 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-----~~G~I~idG~di~~--~~ 1080 (1252)
                      +.++++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.+||+++..  .+
T Consensus         6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~   82 (259)
T PRK14260          6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN   82 (259)
T ss_pred             ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence            35999999999963   3599999999999999999999999999999999999985     48999999999864  44


Q ss_pred             HHHHhcccEEEccccccCcccHHHHhccCCC------CCC-HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 000856         1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKE------GAT-EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 1153 (1252)
Q Consensus      1081 ~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~------~~~-deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQ 1153 (1252)
                      ...+|++++|+||++.+|+.|++||+.++..      ... ++.+.++++.+++.+.+...   +    ...+..|||||
T Consensus        83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~----~~~~~~LS~G~  155 (259)
T PRK14260         83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK---L----NKSALGLSGGQ  155 (259)
T ss_pred             hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH---h----cCCcccCCHHH
Confidence            5678889999999999999999999976421      111 23456777888876554322   2    23445799999


Q ss_pred             HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEe-----CCEEEEe
Q 000856         1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQ-----DGRIVEQ 1227 (1252)
Q Consensus      1154 rQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~-----~G~Ive~ 1227 (1252)
                      |||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|+     +|++++.
T Consensus       156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~  235 (259)
T PRK14260        156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF  235 (259)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence            99999999999999999999999999999999999999998777999999999999865 79999997     5999999


Q ss_pred             cChhhhhcCCCc
Q 000856         1228 GSHSELVSRPDG 1239 (1252)
Q Consensus      1228 G~~~eLl~~~~g 1239 (1252)
                      |+++++.+.+..
T Consensus       236 ~~~~~~~~~~~~  247 (259)
T PRK14260        236 GVTTQIFSNPLD  247 (259)
T ss_pred             CCHHHHhcCCCC
Confidence            999999875444

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-40  Score=371.06  Aligned_cols=219  Identities=32%  Similarity=0.527  Sum_probs=187.4

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCcccCCC--CH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRL--NL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-----~~G~I~idG~di~~~--~~ 1081 (1252)
                      .|+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.+||.++...  +.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   80 (251)
T PRK14270          4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV   80 (251)
T ss_pred             EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence            5899999999963   3599999999999999999999999999999999999985     799999999998653  34


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~~-~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      ..+|++++|+||++.+|..|+++|+.++..  .. +    ++++.++++.+++.+.+...       .......||||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~  153 (251)
T PRK14270         81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDD-------LKKSALKLSGGQQ  153 (251)
T ss_pred             HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhH-------hhCCcccCCHHHH
Confidence            567889999999999999999999986421  11 1    23456777777775433221       2234457999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||++||||++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||||++|++|++++.|+++++
T Consensus       154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (251)
T PRK14270        154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI  233 (251)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence            9999999999999999999999999999999999999988767899999999998865 899999999999999999999


Q ss_pred             hcCC
Q 000856         1234 VSRP 1237 (1252)
Q Consensus      1234 l~~~ 1237 (1252)
                      ...+
T Consensus       234 ~~~~  237 (251)
T PRK14270        234 FLEP  237 (251)
T ss_pred             hcCC
Confidence            7653

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-40  Score=382.01  Aligned_cols=227  Identities=25%  Similarity=0.379  Sum_probs=187.1

Q ss_pred             EEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC----CCCceEEECCcccCCCCHHHH
Q 000856         1010 IELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD----PTAGKVMIDGKDIRRLNLKSL 1084 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~----p~~G~I~idG~di~~~~~~~l 1084 (1252)
                      ++++|++++|+.... .++|+||||+|++||.+||||+||||||||+++|+|+++    |++|+|.+||.|+.+++.+.+
T Consensus         4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~   83 (326)
T PRK11022          4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER   83 (326)
T ss_pred             EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence            799999999964321 359999999999999999999999999999999999998    489999999999998887665


Q ss_pred             hc----ccEEEccccc--cCc-ccHHHH----hccCCC---CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 000856         1085 RL----KIGLVQQEPA--LFA-ASIFDN----IAYGKE---GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 1150 (1252)
Q Consensus      1085 R~----~i~~VpQd~~--lf~-gTIreN----l~~~~~---~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LS 1150 (1252)
                      |+    .++||||+|.  ++. -|+.+|    +.....   ....+++.++++.+++.+....        .......||
T Consensus        84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------l~~~p~~LS  155 (326)
T PRK11022         84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR--------LDVYPHQLS  155 (326)
T ss_pred             HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhCCchhCC
Confidence            43    6999999995  332 355544    432111   1123557788888888643211        123345799


Q ss_pred             hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEe
Q 000856         1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQ 1227 (1252)
Q Consensus      1151 gGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~ 1227 (1252)
                      ||||||++|||||+.+|++||+||||++||+.+...+++.|+++.  .+.|+|+|||+++.+. .||||+||++|+|+|.
T Consensus       156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~  235 (326)
T PRK11022        156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET  235 (326)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999999999999999999999999999999999875  3789999999999985 5899999999999999


Q ss_pred             cChhhhhcCCCchhHHH
Q 000856         1228 GSHSELVSRPDGAYSRL 1244 (1252)
Q Consensus      1228 G~~~eLl~~~~g~y~~l 1244 (1252)
                      |+++++++++...|.+.
T Consensus       236 g~~~~~~~~p~hpyt~~  252 (326)
T PRK11022        236 GKAHDIFRAPRHPYTQA  252 (326)
T ss_pred             CCHHHHhhCCCChHHHH
Confidence            99999998777677643

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-40  Score=372.25  Aligned_cols=221  Identities=32%  Similarity=0.496  Sum_probs=188.9

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCcccCC--CCH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~-----p~~G~I~idG~di~~--~~~ 1081 (1252)
                      -|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.+||.++..  .+.
T Consensus        10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   86 (264)
T PRK14243         10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP   86 (264)
T ss_pred             EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence            4899999999963   369999999999999999999999999999999999986     479999999999853  455


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCCCC--C---CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKEG--A---TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 1156 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~--~---~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1156 (1252)
                      ..+|++++|+||++.+|+.|+++|+.++...  .   .++++.++++.+++.+++...       ....+.+||||||||
T Consensus        87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LSgGq~qr  159 (264)
T PRK14243         87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDK-------LKQSGLSLSGGQQQR  159 (264)
T ss_pred             HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHH-------hcCCcccCCHHHHHH
Confidence            6788899999999999989999999875321  1   234456677777776554321       233456799999999


Q ss_pred             HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEe---------CCEEEE
Q 000856         1157 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQ---------DGRIVE 1226 (1252)
Q Consensus      1157 laLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~---------~G~Ive 1226 (1252)
                      ++|||||+++|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+. .||||++|+         +|+|++
T Consensus       160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~  239 (264)
T PRK14243        160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE  239 (264)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence            9999999999999999999999999999999999999877789999999999875 579999998         899999


Q ss_pred             ecChhhhhcCCCc
Q 000856         1227 QGSHSELVSRPDG 1239 (1252)
Q Consensus      1227 ~G~~~eLl~~~~g 1239 (1252)
                      .|+++++.+.+..
T Consensus       240 ~~~~~~~~~~~~~  252 (264)
T PRK14243        240 FDRTEKIFNSPQQ  252 (264)
T ss_pred             eCCHHHHHhCCCc
Confidence            9999999876443

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-40  Score=370.29  Aligned_cols=220  Identities=35%  Similarity=0.603  Sum_probs=187.9

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-----CceEEECCcccCC--CCH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-----AGKVMIDGKDIRR--LNL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~-----~G~I~idG~di~~--~~~ 1081 (1252)
                      .|+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|+     +|+|.+||.++..  .+.
T Consensus         4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~   80 (251)
T PRK14249          4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV   80 (251)
T ss_pred             eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence            5899999999963   35999999999999999999999999999999999999997     6999999999864  345


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~~-~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      ..+|+.++||||++.+|+.|++||+.++..  .. .    ++.+.++++..++.+.+..       .....+.+||||||
T Consensus        81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~  153 (251)
T PRK14249         81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKD-------NLHKSGLALSGGQQ  153 (251)
T ss_pred             HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhh-------HhhCCcccCCHHHH
Confidence            678899999999999999999999986521  11 1    2334555666666554332       23445668999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|||++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  233 (251)
T PRK14249        154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI  233 (251)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence            9999999999999999999999999999999999999988667999999999999866 699999999999999999999


Q ss_pred             hcCCC
Q 000856         1234 VSRPD 1238 (1252)
Q Consensus      1234 l~~~~ 1238 (1252)
                      ...+.
T Consensus       234 ~~~~~  238 (251)
T PRK14249        234 FSRPR  238 (251)
T ss_pred             HhCCC
Confidence            76533

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=4.9e-41  Score=365.27  Aligned_cols=201  Identities=37%  Similarity=0.598  Sum_probs=175.6

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHH---HHhc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLRL 1086 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~---~lR~ 1086 (1252)
                      ++++|++++|++  +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++..   .+|+
T Consensus         2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (214)
T TIGR02673         2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR   79 (214)
T ss_pred             EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence            689999999952  23699999999999999999999999999999999999999999999999999877643   4688


Q ss_pred             ccEEEccccccCc-ccHHHHhccCC------CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 000856         1087 KIGLVQQEPALFA-ASIFDNIAYGK------EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 1159 (1252)
Q Consensus      1087 ~i~~VpQd~~lf~-gTIreNl~~~~------~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 1159 (1252)
                      .++|+||++.+|. .|++||+.++.      +...+++++++++..++.++....|           ..||||||||++|
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l  148 (214)
T TIGR02673        80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI  148 (214)
T ss_pred             heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence            9999999999885 69999998641      1122456778888888876554433           4699999999999


Q ss_pred             HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCE
Q 000856         1160 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGR 1223 (1252)
Q Consensus      1160 ARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1223 (1252)
                      ||||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus       149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            999999999999999999999999999999999875 48999999999999875 89999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-40  Score=377.01  Aligned_cols=217  Identities=29%  Similarity=0.533  Sum_probs=183.1

Q ss_pred             cEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCC----CHH
Q 000856         1009 EIELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL----NLK 1082 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~----~~~ 1082 (1252)
                      .|+++|++++|++..  ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++...    +..
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK   81 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            378999999996321  13699999999999999999999999999999999999999999999999998653    345


Q ss_pred             HHhcccEEEcccc--ccCcccHHHHhccCCC--CCCH----HHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCChhH
Q 000856         1083 SLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATE----AEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSGGQ 1153 (1252)
Q Consensus      1083 ~lR~~i~~VpQd~--~lf~gTIreNl~~~~~--~~~d----eei~~al~~~~l~-~~i~~lp~gldt~vge~G~~LSgGQ 1153 (1252)
                      ..|+.++|+||+|  .+|..|++||+.++..  ..+.    +.+.++++.+++. ++.           ......|||||
T Consensus        82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq  150 (287)
T PRK13641         82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-----------SKSPFELSGGQ  150 (287)
T ss_pred             HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------hCCcccCCHHH
Confidence            6788999999998  5788899999976421  2222    2345566666664 232           22345799999


Q ss_pred             HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChh
Q 000856         1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHS 1231 (1252)
Q Consensus      1154 rQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~ 1231 (1252)
                      |||++|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|||++||+++.+. .||+|++|++|++++.|+++
T Consensus       151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~  230 (287)
T PRK13641        151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK  230 (287)
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999999875 4789999999999885 58999999999999999999


Q ss_pred             hhhcC
Q 000856         1232 ELVSR 1236 (1252)
Q Consensus      1232 eLl~~ 1236 (1252)
                      ++++.
T Consensus       231 ~~~~~  235 (287)
T PRK13641        231 EIFSD  235 (287)
T ss_pred             HHhcC
Confidence            98754

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=6e-41  Score=370.53  Aligned_cols=215  Identities=35%  Similarity=0.542  Sum_probs=181.5

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      ++++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  .+++++
T Consensus         3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~   77 (239)
T cd03296           3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG   77 (239)
T ss_pred             EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence            789999999974   358999999999999999999999999999999999999999999999998865443  256799


Q ss_pred             EEccCCCCch-hcHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000856          445 LVNQEPALFA-TTILENILYGKPEA------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA  517 (1252)
Q Consensus       445 ~v~Q~~~l~~-~tv~~ni~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARa  517 (1252)
                      |++|+|.++. .|++||+.++....      ...+..     ..+.+.++.+  |++......+.+||||||||++||||
T Consensus        78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~a  150 (239)
T cd03296          78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARA  150 (239)
T ss_pred             EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence            9999999886 49999998763211      111111     1122344444  56656677788999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          518 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       518 l~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |+.+|+++||||||++||+++++.+.+.|.++.+  |+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus       151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  227 (239)
T cd03296         151 LAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH  227 (239)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence            9999999999999999999999999999998753  7899999999998865 899999999999999999887643

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-40  Score=375.92  Aligned_cols=226  Identities=34%  Similarity=0.525  Sum_probs=189.2

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCcccCCC--C
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRRL--N 1080 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~-----p~~G~I~idG~di~~~--~ 1080 (1252)
                      ..|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+.+     |++|+|.+||.++...  +
T Consensus        38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~  114 (286)
T PRK14275         38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD  114 (286)
T ss_pred             eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence            35899999999963   359999999999999999999999999999999999865     4999999999998643  3


Q ss_pred             HHHHhcccEEEccccccCcccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 000856         1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 1153 (1252)
Q Consensus      1081 ~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~~-~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQ 1153 (1252)
                      ...+|++++||||++.+|.+|++||+.++..  .. +    ++++.++++..++.+.+.   +.++    .....|||||
T Consensus       115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~----~~~~~LSgGq  187 (286)
T PRK14275        115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRLD----KNALGLSGGQ  187 (286)
T ss_pred             hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHhh----CChhhCCHHH
Confidence            3467889999999999998999999986421  11 1    234556777777654322   1223    3345799999


Q ss_pred             HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhh
Q 000856         1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 1232 (1252)
Q Consensus      1154 rQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~e 1232 (1252)
                      |||++|||||+++|++|||||||++||+++...+.+.|+++.+++|||++||+++.+.. ||+|++|++|++++.|++++
T Consensus       188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~  267 (286)
T PRK14275        188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ  267 (286)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999988767899999999999864 89999999999999999999


Q ss_pred             hhcCCCchhHH
Q 000856         1233 LVSRPDGAYSR 1243 (1252)
Q Consensus      1233 Ll~~~~g~y~~ 1243 (1252)
                      +.+++...|.+
T Consensus       268 ~~~~~~~~~~~  278 (286)
T PRK14275        268 LFTNPKDRMTE  278 (286)
T ss_pred             HHhCCCcHHHH
Confidence            98765444443

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=1e-40  Score=382.16  Aligned_cols=228  Identities=27%  Similarity=0.439  Sum_probs=187.8

Q ss_pred             cEEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC---CceEEECCcccCCCCHHHH
Q 000856         1009 EIELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT---AGKVMIDGKDIRRLNLKSL 1084 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~---~G~I~idG~di~~~~~~~l 1084 (1252)
                      -++++|++++|+.+. ..++++|+||+|++||++||+|+||||||||+++|+|+++|+   +|+|.+||.|+..++..++
T Consensus        12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~   91 (330)
T PRK09473         12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL   91 (330)
T ss_pred             eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence            489999999996321 246999999999999999999999999999999999999996   9999999999999887765


Q ss_pred             h----cccEEEccccc--cCc-ccHHHHhccC---CCCCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 000856         1085 R----LKIGLVQQEPA--LFA-ASIFDNIAYG---KEGATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 1150 (1252)
Q Consensus      1085 R----~~i~~VpQd~~--lf~-gTIreNl~~~---~~~~~d----eei~~al~~~~l~~~i~~lp~gldt~vge~G~~LS 1150 (1252)
                      |    ++|+||||||.  ++. .|+.+|+...   ....+.    +.+.++++.+++.       ++. ..++.....||
T Consensus        92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~-------~~~-~~~~~~p~~LS  163 (330)
T PRK09473         92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMP-------EAR-KRMKMYPHEFS  163 (330)
T ss_pred             HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-------ChH-HHhcCCcccCC
Confidence            3    47999999993  443 5777766421   111232    2345555655543       222 12344567899


Q ss_pred             hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEe
Q 000856         1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQ 1227 (1252)
Q Consensus      1151 gGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~ 1227 (1252)
                      ||||||++|||||+.+|++||+|||||+||..+...+.+.|+++.+  +.|+|+|||+++.+. .||||+||.+|+|+|.
T Consensus       164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~  243 (330)
T PRK09473        164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY  243 (330)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence            9999999999999999999999999999999999999999998754  789999999999986 5899999999999999


Q ss_pred             cChhhhhcCCCchhHHH
Q 000856         1228 GSHSELVSRPDGAYSRL 1244 (1252)
Q Consensus      1228 G~~~eLl~~~~g~y~~l 1244 (1252)
                      |+++++++++...|.+.
T Consensus       244 g~~~~i~~~p~~pyt~~  260 (330)
T PRK09473        244 GNARDVFYQPSHPYSIG  260 (330)
T ss_pred             CCHHHHHhCCCCHHHHH
Confidence            99999998877777653

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-40  Score=368.43  Aligned_cols=216  Identities=37%  Similarity=0.604  Sum_probs=185.0

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .++++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i   79 (241)
T PRK14250          3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI   79 (241)
T ss_pred             eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence            4889999999964   3489999999999999999999999999999999999999999999999998877777778889


Q ss_pred             eEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhccCC
Q 000856          444 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIAIARAMLKNP  522 (1252)
Q Consensus       444 ~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~LSgGqkqRv~lARal~~~~  522 (1252)
                      +|++|++.+|+.|++||+.++.......+       ..+.+.++.+  |+. ....+.+.+||||||||++||||++.+|
T Consensus        80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p  150 (241)
T PRK14250         80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKN-------VDVEYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNP  150 (241)
T ss_pred             EEEecCchhchhhHHHHHhcchhhcCcHH-------HHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence            99999999998899999987642111110       1122333333  453 3456678899999999999999999999


Q ss_pred             CEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          523 KILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       523 ~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +++||||||++||+.+++.+.+.|+++.  .|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  222 (241)
T PRK14250        151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN  222 (241)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence            9999999999999999999999999875  38999999999999876 899999999999999999988654

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.4e-41  Score=375.44  Aligned_cols=213  Identities=30%  Similarity=0.476  Sum_probs=182.7

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccC--CCCHHHHhcc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSLRLK 1087 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~--~~~~~~lR~~ 1087 (1252)
                      |+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.  +.+...+|++
T Consensus         2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~   78 (271)
T PRK13638          2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ   78 (271)
T ss_pred             eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence            689999999963   35999999999999999999999999999999999999999999999999985  3445678889


Q ss_pred             cEEEccccc--cCcccHHHHhccCC--CCCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 000856         1088 IGLVQQEPA--LFAASIFDNIAYGK--EGATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 1159 (1252)
Q Consensus      1088 i~~VpQd~~--lf~gTIreNl~~~~--~~~~d----eei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 1159 (1252)
                      ++||||++.  +|..|+.+|+.++.  ...+.    +++.++++..++.++..       ++    ...||||||||++|
T Consensus        79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LSgG~~qrl~l  147 (271)
T PRK13638         79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-------QP----IQCLSHGQKKRVAI  147 (271)
T ss_pred             eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-------CC----chhCCHHHHHHHHH
Confidence            999999985  67789999997641  11222    33456777777755432       22    34699999999999


Q ss_pred             HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1160 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1160 ARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      ||||+.+|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+. .||+|++|++|++++.|++++++..
T Consensus       148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  226 (271)
T PRK13638        148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC  226 (271)
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            999999999999999999999999999999999875 4789999999999985 4899999999999999999998764

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=6e-41  Score=363.72  Aligned_cols=201  Identities=40%  Similarity=0.683  Sum_probs=173.6

Q ss_pred             EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEE
Q 000856         1011 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 1090 (1252)
Q Consensus      1011 ~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~ 1090 (1252)
                      +++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|++++|
T Consensus         1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (211)
T cd03225           1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL   79 (211)
T ss_pred             CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence            468999999642 2469999999999999999999999999999999999999999999999999988888888999999


Q ss_pred             Ecccc--ccCcccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1091 VQQEP--ALFAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1091 VpQd~--~lf~gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      +||++  .++..|+++|+.++..  ..+    ++++.++++..++.++....           ...||||||||++||||
T Consensus        80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~lara  148 (211)
T cd03225          80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRS-----------PFTLSGGQKQRVAIAGV  148 (211)
T ss_pred             EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCC-----------cccCCHHHHHHHHHHHH
Confidence            99998  3678899999986421  112    23456677777776554332           35799999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCE
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGR 1223 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~ 1223 (1252)
                      |+++|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+
T Consensus       149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            999999999999999999999999999999875 47899999999999976 89999999985

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=7e-41  Score=368.94  Aligned_cols=219  Identities=37%  Similarity=0.581  Sum_probs=183.8

Q ss_pred             EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHH---HHh
Q 000856          365 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLR  440 (1252)
Q Consensus       365 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~  440 (1252)
                      |+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..   ..+
T Consensus         2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (233)
T cd03258           2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR   81 (233)
T ss_pred             eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence            68999999997431 12589999999999999999999999999999999999999999999999998776543   346


Q ss_pred             hhceEEccCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000856          441 DQIGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA  517 (1252)
Q Consensus       441 ~~i~~v~Q~~~l~~-~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARa  517 (1252)
                      +.++|++|++.+|. .|++||+.++...  ....+..     ..+.+.++.+  |++........+||||||||++||||
T Consensus        82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a  154 (233)
T cd03258          82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE-----ERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA  154 (233)
T ss_pred             hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence            78999999999987 5999999875321  1111111     1223445554  66666677788999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-C-CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          518 MLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       518 l~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      ++.+|+++||||||++||+.+++.+.+.|+++. + |+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus       155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (233)
T cd03258         155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA  230 (233)
T ss_pred             HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence            999999999999999999999999999999875 3 8999999999999866 89999999999999999887754

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=8.8e-41  Score=388.39  Aligned_cols=222  Identities=24%  Similarity=0.404  Sum_probs=186.8

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++++|++   +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+...+++++
T Consensus         3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i   79 (402)
T PRK09536          3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV   79 (402)
T ss_pred             eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence            4899999999974   4599999999999999999999999999999999999999999999999999988888888899


Q ss_pred             eEEccCCCCc-hhcHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000856          444 GLVNQEPALF-ATTILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       444 ~~v~Q~~~l~-~~tv~~ni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~  520 (1252)
                      +||+|++.++ +.|++||+.++....  ..... .......+.+.++.+  |+.....+...+||||||||++|||||++
T Consensus        80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~-~~~~~~~v~~~le~v--gl~~~~~~~~~~LSgGerQRv~IArAL~~  156 (402)
T PRK09536         80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTW-TETDRAAVERAMERT--GVAQFADRPVTSLSGGERQRVLLARALAQ  156 (402)
T ss_pred             EEEccCCCCCCCCCHHHHHHhccchhcccccCC-CHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence            9999999874 669999999874211  00000 000001112233333  55555667788999999999999999999


Q ss_pred             CCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       521 ~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +|++|||||||++||+.++..+++.|+++. +++|+|++||+++.+.. |||+++|++|++++.|++++++..
T Consensus       157 ~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~  229 (402)
T PRK09536        157 ATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA  229 (402)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence            999999999999999999999999999985 58999999999999965 899999999999999999998754

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-40  Score=367.63  Aligned_cols=214  Identities=25%  Similarity=0.395  Sum_probs=180.3

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHH-Hhcc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS-LRLK 1087 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~-lR~~ 1087 (1252)
                      -|+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+... +|+.
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~   81 (237)
T PRK11614          5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA   81 (237)
T ss_pred             EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence            4899999999963   36999999999999999999999999999999999999999999999999998887654 6788


Q ss_pred             cEEEccccccCcc-cHHHHhccCCCCCCHH----HHHHHHHHc-CchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 000856         1088 IGLVQQEPALFAA-SIFDNIAYGKEGATEA----EVVEAARAA-NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161 (1252)
Q Consensus      1088 i~~VpQd~~lf~g-TIreNl~~~~~~~~de----ei~~al~~~-~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 1161 (1252)
                      ++|+||++.+|.+ |+++|+.++....+.+    ++.++++.. ++.+.       .+.    ....||||||||++|||
T Consensus        82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~-------~~~----~~~~LS~G~~qrl~la~  150 (237)
T PRK11614         82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHER-------RIQ----RAGTMSGGEQQMLAIGR  150 (237)
T ss_pred             EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHH-------HhC----chhhCCHHHHHHHHHHH
Confidence            9999999999984 9999998753212222    233333333 12211       122    34579999999999999


Q ss_pred             HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1162 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1162 ALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti-~~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      |++++|+||||||||++||+.+...+.+.|++.. +++|+|++||+++.+ ..||++++|++|++++.|+++++...
T Consensus       151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  227 (237)
T PRK11614        151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN  227 (237)
T ss_pred             HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence            9999999999999999999999999999999875 489999999999976 45899999999999999999999753

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=4.6e-41  Score=365.88  Aligned_cols=207  Identities=28%  Similarity=0.484  Sum_probs=171.6

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHH---HHhh
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLRD  441 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~~  441 (1252)
                      ++++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..   .+++
T Consensus         2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (216)
T TIGR00960         2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR   80 (216)
T ss_pred             eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence            6899999999642 23589999999999999999999999999999999999999999999999988765433   3677


Q ss_pred             hceEEccCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000856          442 QIGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM  518 (1252)
Q Consensus       442 ~i~~v~Q~~~l~~~-tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal  518 (1252)
                      +++|++|++.++.. |++||+.++...  ...++..     ..+.+.++.+  |+.....+...+||||||||++|||||
T Consensus        81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral  153 (216)
T TIGR00960        81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDAN-----ERVSAALEKV--GLEGKAHALPMQLSGGEQQRVAIARAI  153 (216)
T ss_pred             hceEEecCccccccccHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence            89999999998865 999999875211  1111111     1122333333  555555667789999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEE
Q 000856          519 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQV  579 (1252)
Q Consensus       519 ~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i  579 (1252)
                      +.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus       154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i  216 (216)
T TIGR00960       154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL  216 (216)
T ss_pred             hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999999875 48999999999999976 899999999974

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-40  Score=377.40  Aligned_cols=220  Identities=30%  Similarity=0.514  Sum_probs=182.0

Q ss_pred             cccEEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCC----C-
Q 000856         1007 RGEIELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR----L- 1079 (1252)
Q Consensus      1007 ~g~I~~~nvsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~----~- 1079 (1252)
                      .+.|+++|++++|++..  ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..    . 
T Consensus         4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~   83 (289)
T PRK13645          4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK   83 (289)
T ss_pred             cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence            36799999999996432  1259999999999999999999999999999999999999999999999999852    2 


Q ss_pred             CHHHHhcccEEEcccc--ccCcccHHHHhccCCC--CCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCCh
Q 000856         1080 NLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 1151 (1252)
Q Consensus      1080 ~~~~lR~~i~~VpQd~--~lf~gTIreNl~~~~~--~~~dee----i~~al~~~~l~~~i~~lp~gldt~vge~G~~LSg 1151 (1252)
                      +...+|++++|+||+|  .+|..|++||+.++..  ....++    +.++++..++       |+++   .......|||
T Consensus        84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~---~~~~~~~LS~  153 (289)
T PRK13645         84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PEDY---VKRSPFELSG  153 (289)
T ss_pred             cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------ChhH---hcCChhhCCH
Confidence            4567888999999998  4678899999986421  123322    3334444444       2111   2233457999


Q ss_pred             hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEec
Q 000856         1152 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1152 GQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G 1228 (1252)
                      |||||++|||||+++|++|||||||++||+.+...+.+.|++..  .++|||+|||+++.+. .||+|++|++|++++.|
T Consensus       154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g  233 (289)
T PRK13645        154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG  233 (289)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence            99999999999999999999999999999999999999999875  3789999999999875 58999999999999999


Q ss_pred             ChhhhhcC
Q 000856         1229 SHSELVSR 1236 (1252)
Q Consensus      1229 ~~~eLl~~ 1236 (1252)
                      +++++++.
T Consensus       234 ~~~~~~~~  241 (289)
T PRK13645        234 SPFEIFSN  241 (289)
T ss_pred             CHHHHhcC
Confidence            99888654

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=4.3e-41  Score=369.86  Aligned_cols=212  Identities=28%  Similarity=0.463  Sum_probs=178.6

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHH-Hhccc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS-LRLKI 1088 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~-lR~~i 1088 (1252)
                      |+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... .++++
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (230)
T TIGR03410         1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI   77 (230)
T ss_pred             CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence            478999999963   36999999999999999999999999999999999999999999999999998877654 46789


Q ss_pred             EEEccccccCcc-cHHHHhccCCCC--CCHHH-HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 000856         1089 GLVQQEPALFAA-SIFDNIAYGKEG--ATEAE-VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 1164 (1252)
Q Consensus      1089 ~~VpQd~~lf~g-TIreNl~~~~~~--~~dee-i~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl 1164 (1252)
                      +|+||++.+|.. |+++|+.++...  ..+++ ..++++..+.          ++.........||||||||++|||||+
T Consensus        78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~----------l~~~~~~~~~~LS~G~~qrv~la~al~  147 (230)
T TIGR03410        78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV----------LKEMLGRRGGDLSGGQQQQLAIARALV  147 (230)
T ss_pred             EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh----------HHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence            999999999976 999999865321  12222 2333333321          112223334579999999999999999


Q ss_pred             cCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000856         1165 KNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1165 ~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      ++|+++||||||++||+.+...+.+.|++..+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus       148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~  220 (230)
T TIGR03410       148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD  220 (230)
T ss_pred             cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence            99999999999999999999999999998753  7899999999999975 8999999999999999999873

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-40  Score=376.28  Aligned_cols=217  Identities=32%  Similarity=0.538  Sum_probs=182.5

Q ss_pred             EEEEeEEEECCCCC--CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCC----CHHH
Q 000856         1010 IELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL----NLKS 1083 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~--~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~----~~~~ 1083 (1252)
                      |+++||+++|++..  ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...    +...
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ   82 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence            78999999996421  13699999999999999999999999999999999999999999999999998764    3567


Q ss_pred             HhcccEEEcccc--ccCcccHHHHhccCCC--CCCHHH----HHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 000856         1084 LRLKIGLVQQEP--ALFAASIFDNIAYGKE--GATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 1155 (1252)
Q Consensus      1084 lR~~i~~VpQd~--~lf~gTIreNl~~~~~--~~~dee----i~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1155 (1252)
                      +|++++|+||++  .+|+.|+++|+.++..  ..+.++    +.++++..++.+.          ........|||||||
T Consensus        83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~q  152 (280)
T PRK13649         83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQMR  152 (280)
T ss_pred             HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence            888999999998  6888999999986421  123332    3444555555321          112334579999999


Q ss_pred             HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhh
Q 000856         1156 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1156 rlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      |++|||||+++|++|||||||++||+.+...+.+.|++.. .++|||++||+++.+. .||+|++|++|++++.|+++++
T Consensus       153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (280)
T PRK13649        153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI  232 (280)
T ss_pred             HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999875 4789999999999885 4899999999999999999998


Q ss_pred             hcC
Q 000856         1234 VSR 1236 (1252)
Q Consensus      1234 l~~ 1236 (1252)
                      ++.
T Consensus       233 ~~~  235 (280)
T PRK13649        233 FQD  235 (280)
T ss_pred             hcC
Confidence            764

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=7.4e-41  Score=364.03  Aligned_cols=202  Identities=33%  Similarity=0.546  Sum_probs=174.4

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCH---HHHhc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL---KSLRL 1086 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~---~~lR~ 1086 (1252)
                      ++++|++++|++.  .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.   ..+|+
T Consensus         1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   78 (214)
T cd03292           1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR   78 (214)
T ss_pred             CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence            4789999999632  359999999999999999999999999999999999999999999999999987654   34788


Q ss_pred             ccEEEccccccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 000856         1087 KIGLVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 1159 (1252)
Q Consensus      1087 ~i~~VpQd~~lf~-gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 1159 (1252)
                      .++||||++.+|. .|++||+.++..  ..+    ++++.++++..++.+.....|           .+||||||||++|
T Consensus        79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~l  147 (214)
T cd03292          79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAI  147 (214)
T ss_pred             heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHH
Confidence            9999999999887 599999986421  112    345667777777765544332           4699999999999


Q ss_pred             HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEE
Q 000856         1160 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRI 1224 (1252)
Q Consensus      1160 ARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~I 1224 (1252)
                      ||||+++|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus       148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999999999999999999999999999999874 57999999999999875 899999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=5.1e-41  Score=364.69  Aligned_cols=198  Identities=31%  Similarity=0.508  Sum_probs=170.6

Q ss_pred             EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEE
Q 000856         1011 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 1090 (1252)
Q Consensus      1011 ~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~ 1090 (1252)
                      +++||+++|++   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.     .+|++++|
T Consensus         1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~   72 (213)
T cd03235           1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY   72 (213)
T ss_pred             CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence            36899999963   35999999999999999999999999999999999999999999999998874     46889999


Q ss_pred             Ecccccc---CcccHHHHhccCCCC----------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 000856         1091 VQQEPAL---FAASIFDNIAYGKEG----------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 1157 (1252)
Q Consensus      1091 VpQd~~l---f~gTIreNl~~~~~~----------~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1157 (1252)
                      +||++.+   |..|++||+.++...          ..++++.++++..++.++....           ..+||||||||+
T Consensus        73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv  141 (213)
T cd03235          73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----------IGELSGGQQQRV  141 (213)
T ss_pred             eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHH
Confidence            9999976   668999999865321          1234567788888887654432           246999999999


Q ss_pred             HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000856         1158 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1158 aLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1228 (1252)
                      +|||||+++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus       142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence            99999999999999999999999999999999999875 67899999999999865 7999999986 55554

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-40  Score=369.11  Aligned_cols=224  Identities=33%  Similarity=0.559  Sum_probs=191.7

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCcccCC--CCH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LNL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~-----p~~G~I~idG~di~~--~~~ 1081 (1252)
                      .++++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+.+     |++|+|.+||+++..  .+.
T Consensus         3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~   79 (250)
T PRK14266          3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV   79 (250)
T ss_pred             EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence            3789999999963   359999999999999999999999999999999999975     489999999999875  345


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCCC--CC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKE--GA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~~-~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      ..+|++++|+||++.+|.+|+++|+.++..  .. +    ++++.++++.+++.+++..+   ++    ..+..||||||
T Consensus        80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~---~~----~~~~~LS~Gq~  152 (250)
T PRK14266         80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK---LD----KSALGLSGGQQ  152 (250)
T ss_pred             HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH---Hh----CCcccCCHHHH
Confidence            678899999999999999999999986421  11 1    24466778888887665432   33    33457999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||++||||++++|++|+|||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~  232 (250)
T PRK14266        153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI  232 (250)
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998778999999999998865 699999999999999999999


Q ss_pred             hcCCCchhH
Q 000856         1234 VSRPDGAYS 1242 (1252)
Q Consensus      1234 l~~~~g~y~ 1242 (1252)
                      ...+.+.+.
T Consensus       233 ~~~~~~~~~  241 (250)
T PRK14266        233 FINPKDKRT  241 (250)
T ss_pred             HhCCCChHH
Confidence            876555543

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-40  Score=387.06  Aligned_cols=218  Identities=32%  Similarity=0.517  Sum_probs=185.8

Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhh
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ  442 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~  442 (1252)
                      ..|+++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.+.+.  .++.
T Consensus        18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~   92 (377)
T PRK11607         18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP   92 (377)
T ss_pred             ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence            35999999999963   358999999999999999999999999999999999999999999999999876654  4568


Q ss_pred             ceEEccCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~  519 (1252)
                      |+||+|++.+|+. ||+||+.|+...  ....+..+     .+.+.++.+  |+.....+.+.+|||||||||+|||||+
T Consensus        93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~  165 (377)
T PRK11607         93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLA  165 (377)
T ss_pred             EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence            9999999999976 999999987431  12222211     122334444  5666667788899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhcc
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       520 ~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      .+|++||||||||+||+.+++.+.+.|+++.  .|.|+|++||+++++.. ||+|++|++|++++.|+++++..+.
T Consensus       166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p  241 (377)
T PRK11607        166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP  241 (377)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence            9999999999999999999999998888764  38999999999999765 8999999999999999999987653

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=4.5e-41  Score=365.09  Aligned_cols=207  Identities=37%  Similarity=0.588  Sum_probs=173.9

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      ++++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.  .+++++
T Consensus         1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~   75 (213)
T cd03259           1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG   75 (213)
T ss_pred             CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence            478999999964   358999999999999999999999999999999999999999999999998875442  356899


Q ss_pred             EEccCCCCch-hcHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          445 LVNQEPALFA-TTILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       445 ~v~Q~~~l~~-~tv~~ni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      |++|++.++. .|++||+.++....  ...+...     .+.+.++.+  |++....+...+||||||||++|||||+.+
T Consensus        76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~  148 (213)
T cd03259          76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE  148 (213)
T ss_pred             EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence            9999998886 49999998753211  1111111     122344444  666666777789999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEec
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG  583 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g  583 (1252)
                      |+++||||||++||+.+++.+.+.|+++.  .|+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus       149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g  213 (213)
T cd03259         149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG  213 (213)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence            99999999999999999999999999874  38999999999999866 8999999999998765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.1e-40  Score=369.94  Aligned_cols=220  Identities=32%  Similarity=0.535  Sum_probs=181.8

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCH---HHHhh
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL---RWLRD  441 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~  441 (1252)
                      ++++|++++|+.  +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.   ..+++
T Consensus         2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (243)
T TIGR02315         2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR   79 (243)
T ss_pred             eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence            689999999962  2358999999999999999999999999999999999999999999999999876553   34677


Q ss_pred             hceEEccCCCCch-hcHHHHHhcCCCCCC--HHHH---HHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 000856          442 QIGLVNQEPALFA-TTILENILYGKPEAT--MAEV---EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA  515 (1252)
Q Consensus       442 ~i~~v~Q~~~l~~-~tv~~ni~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lA  515 (1252)
                      +++|++|++.++. .|++||+.++.....  ....   ........+.+.++.+  |+....+..+.+||||||||++||
T Consensus        80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la  157 (243)
T TIGR02315        80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIA  157 (243)
T ss_pred             heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence            8999999998886 499999987642110  0000   0000111223344444  666666778889999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          516 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       516 Ral~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      |||+.+|+++||||||++||+.+++.+.+.|+++.  .++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (243)
T TIGR02315       158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL  233 (243)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence            99999999999999999999999999999999874  37999999999999865 899999999999999998876

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-40  Score=369.39  Aligned_cols=213  Identities=27%  Similarity=0.454  Sum_probs=186.8

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...++++++
T Consensus         3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (258)
T PRK13548          3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA   79 (258)
T ss_pred             EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence            789999999963   35999999999999999999999999999999999999999999999999998888888888999


Q ss_pred             EEcccccc-CcccHHHHhccCCCC------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPAL-FAASIFDNIAYGKEG------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~l-f~gTIreNl~~~~~~------~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      |+||++.+ +..|++||+.++...      ..++.+.++++..++.++....           ...||||||||++||||
T Consensus        80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGe~qrv~la~a  148 (258)
T PRK13548         80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD-----------YPQLSGGEQQRVQLARV  148 (258)
T ss_pred             EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCC-----------cccCCHHHHHHHHHHHH
Confidence            99999977 678999999865321      1234567777877776544332           34799999999999999


Q ss_pred             Hc------cCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhh
Q 000856         1163 VL------KNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1163 Ll------~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      |+      ++|++|||||||++||+.+...+.+.|+++.  .++|||++||+++.+. .||+|++|++|++++.|+++++
T Consensus       149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  228 (258)
T PRK13548        149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV  228 (258)
T ss_pred             HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence            99      5999999999999999999999999999875  4789999999999886 5899999999999999999998


Q ss_pred             hcC
Q 000856         1234 VSR 1236 (1252)
Q Consensus      1234 l~~ 1236 (1252)
                      .+.
T Consensus       229 ~~~  231 (258)
T PRK13548        229 LTP  231 (258)
T ss_pred             hCh
Confidence            753

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.5e-41  Score=389.25  Aligned_cols=216  Identities=30%  Similarity=0.488  Sum_probs=183.9

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..  +++|
T Consensus         3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i   77 (369)
T PRK11000          3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV   77 (369)
T ss_pred             EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence            3899999999964   3589999999999999999999999999999999999999999999999998766543  4679


Q ss_pred             eEEccCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000856          444 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~  520 (1252)
                      +||+|++.+|+. ||+||+.++...  ....+...     .+.+.++.+  |++....+...+|||||||||+|||||+.
T Consensus        78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~  150 (369)
T PRK11000         78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA  150 (369)
T ss_pred             EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence            999999999975 999999986431  11111111     122334444  66666677788999999999999999999


Q ss_pred             CCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       521 ~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +|++|||||||++||+.+++.+.+.|+++.+  |.|+|+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus       151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~  224 (369)
T PRK11000        151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY  224 (369)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999999999999999998743  8999999999999866 899999999999999999998654

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-40  Score=370.23  Aligned_cols=225  Identities=33%  Similarity=0.561  Sum_probs=187.0

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-----CceEEECCcccCC--CCH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-----AGKVMIDGKDIRR--LNL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~-----~G~I~idG~di~~--~~~ 1081 (1252)
                      -++++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|+     +|+|.+||.++..  .+.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~   80 (252)
T PRK14272          4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP   80 (252)
T ss_pred             EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence            3789999999963   36999999999999999999999999999999999999874     8999999999875  345


Q ss_pred             HHHhcccEEEccccccCc-ccHHHHhccCCC--CC-CHHHH----HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 000856         1082 KSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--GA-TEAEV----VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 1153 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~-gTIreNl~~~~~--~~-~deei----~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQ 1153 (1252)
                      ..+|+.++|+||++.+|. .|++||+.++..  .. .+++.    .+.++..++.+.+   ++.++.++    .+|||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~~----~~LS~G~  153 (252)
T PRK14272         81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLKTPA----TGLSGGQ  153 (252)
T ss_pred             HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhcCCc----ccCCHHH
Confidence            577889999999999887 599999975421  11 23332    2334445444322   23344444    5699999


Q ss_pred             HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhh
Q 000856         1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 1232 (1252)
Q Consensus      1154 rQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~e 1232 (1252)
                      |||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||||++|++|++++.|++++
T Consensus       154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~  233 (252)
T PRK14272        154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ  233 (252)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999988777999999999999875 89999999999999999999


Q ss_pred             hhcCCCchhHH
Q 000856         1233 LVSRPDGAYSR 1243 (1252)
Q Consensus      1233 Ll~~~~g~y~~ 1243 (1252)
                      +++.+...+..
T Consensus       234 ~~~~~~~~~~~  244 (252)
T PRK14272        234 LFTNPRDERTE  244 (252)
T ss_pred             HHhCcCcHHHH
Confidence            98765554533

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=2e-40  Score=365.40  Aligned_cols=211  Identities=37%  Similarity=0.539  Sum_probs=183.7

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++|++++|++   .++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.  .++.++
T Consensus         1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~   75 (237)
T TIGR00968         1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG   75 (237)
T ss_pred             CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence            478999999963   359999999999999999999999999999999999999999999999999986653  478899


Q ss_pred             EEccccccCcc-cHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPALFAA-SIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~lf~g-TIreNl~~~~~--~~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      |+||++.+|.+ |++||+.++..  ..    .++++.++++..++.++....           ..+||+||+||++||||
T Consensus        76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~lara  144 (237)
T TIGR00968        76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRY-----------PNQLSGGQRQRVALARA  144 (237)
T ss_pred             EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHHHHHHHH
Confidence            99999999975 99999986432  11    234566777777776554432           24799999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcC
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      ++++|+++||||||++||++++..+.+.|++..+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus       145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~  221 (237)
T TIGR00968       145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH  221 (237)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence            9999999999999999999999999999998653  7999999999998755 899999999999999999999864

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=9.2e-41  Score=367.08  Aligned_cols=212  Identities=38%  Similarity=0.607  Sum_probs=185.9

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++|++++|++   .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||+++...+.  .++.++
T Consensus         1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~   75 (232)
T cd03300           1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN   75 (232)
T ss_pred             CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence            478999999963   359999999999999999999999999999999999999999999999999987654  367899


Q ss_pred             EEccccccCcc-cHHHHhccCCC------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPALFAA-SIFDNIAYGKE------GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~lf~g-TIreNl~~~~~------~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      |+||++.+|.+ |+++|+.++..      ...++++.++++..++.++....|           ..||+|||||++||||
T Consensus        76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara  144 (232)
T cd03300          76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA  144 (232)
T ss_pred             EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence            99999999965 99999985421      112456677788888877665544           4799999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcCC
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRP 1237 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~~ 1237 (1252)
                      ++++|+++||||||++||+.+...+.+.|++..+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus       145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~  222 (232)
T cd03300         145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP  222 (232)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence            9999999999999999999999999999998753  7999999999999865 8999999999999999999998653

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-40  Score=371.11  Aligned_cols=221  Identities=29%  Similarity=0.484  Sum_probs=187.7

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCcccCCCC-HH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRRLN-LK 1082 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-----~~G~I~idG~di~~~~-~~ 1082 (1252)
                      .++++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.+||.++.+.+ ..
T Consensus        21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~   97 (276)
T PRK14271         21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL   97 (276)
T ss_pred             EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence            5899999999963   3699999999999999999999999999999999999986     6999999999987653 45


Q ss_pred             HHhcccEEEccccccCcccHHHHhccCCC---CCCHHHH----HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 000856         1083 SLRLKIGLVQQEPALFAASIFDNIAYGKE---GATEAEV----VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 1155 (1252)
Q Consensus      1083 ~lR~~i~~VpQd~~lf~gTIreNl~~~~~---~~~deei----~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1155 (1252)
                      .+|++++|+||++.+|..|+++|+.++..   ..++++.    .++++..++.+..       ++.+.....+|||||||
T Consensus        98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~q  170 (276)
T PRK14271         98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQQ  170 (276)
T ss_pred             HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHHH
Confidence            67899999999999999999999986521   1344443    3444555554322       12234455689999999


Q ss_pred             HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000856         1156 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1156 rlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      |++|||||+++|++|||||||++||+.+.+.+.+.|++..+++|||+|||+++.+.. ||||++|++|++++.|+++++.
T Consensus       171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~  250 (276)
T PRK14271        171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF  250 (276)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999988767899999999999865 8999999999999999999998


Q ss_pred             cCCCc
Q 000856         1235 SRPDG 1239 (1252)
Q Consensus      1235 ~~~~g 1239 (1252)
                      +.+..
T Consensus       251 ~~~~~  255 (276)
T PRK14271        251 SSPKH  255 (276)
T ss_pred             hCcCc
Confidence            76433

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.8e-41  Score=354.99  Aligned_cols=218  Identities=35%  Similarity=0.520  Sum_probs=185.8

Q ss_pred             cEEEEeEEEECCCCC---------------------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 000856          364 NIEFKNVTFSYPSRP---------------------DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG  422 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~---------------------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G  422 (1252)
                      .|+++||++-|++++                     -...++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus         4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G   83 (386)
T COG4175           4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG   83 (386)
T ss_pred             eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence            588999999886422                     12357899999999999999999999999999999999999999


Q ss_pred             EEEECCccccCCCHHHHh----hhceEEccCCCCchh-cHHHHHhcCCCCCCH------HHHHHHHHHhcHHHHHhhCCC
Q 000856          423 HVLLDNVDIKTLQLRWLR----DQIGLVNQEPALFAT-TILENILYGKPEATM------AEVEAAASAANAHSFITLLPN  491 (1252)
Q Consensus       423 ~i~~~g~~~~~~~~~~~~----~~i~~v~Q~~~l~~~-tv~~ni~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  491 (1252)
                      +|+++|.|+..++.+.+|    +++++|||+..|++- ||.||..||.+-...      ++..++++.+           
T Consensus        84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~V-----------  152 (386)
T COG4175          84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELV-----------  152 (386)
T ss_pred             eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHc-----------
Confidence            999999999998876543    479999999999876 999999999763321      2223333344           


Q ss_pred             CccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-c
Q 000856          492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-V  568 (1252)
Q Consensus       492 g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~  568 (1252)
                      |++..-...+.+||||+||||.|||||..+|+|||+|||+|||||--+..+++.|.++.  -.||+|+||||+++..+ .
T Consensus       153 gL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG  232 (386)
T COG4175         153 GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG  232 (386)
T ss_pred             CchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence            55555555666999999999999999999999999999999999999999999998774  37999999999999866 6


Q ss_pred             CEEEEEeCCEEEEecChHHHHhcc
Q 000856          569 DTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       569 d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      |||..|++|+|+..|+++|+..+.
T Consensus       233 ~rIaimkdG~ivQ~Gtp~eIl~~P  256 (386)
T COG4175         233 DRIAIMKDGEIVQVGTPEEILLNP  256 (386)
T ss_pred             ceEEEecCCeEEEeCCHHHHHcCc
Confidence            999999999999999999998764

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=2.8e-40  Score=357.02  Aligned_cols=202  Identities=34%  Similarity=0.572  Sum_probs=177.9

Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhh
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ  442 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~  442 (1252)
                      +.++++|++++|++. +.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++
T Consensus         5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   83 (207)
T cd03369           5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS   83 (207)
T ss_pred             CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence            469999999999742 2358999999999999999999999999999999999999999999999999887777778889


Q ss_pred             ceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000856          443 IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP  522 (1252)
Q Consensus       443 i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~  522 (1252)
                      ++||+|+|.++++|++||+.+... ...+++..++         +         +++.+.+||||||||++||||++.+|
T Consensus        84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l---------~---------~~~~~~~LS~G~~qrv~laral~~~p  144 (207)
T cd03369          84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGAL---------R---------VSEGGLNLSQGQRQLLCLARALLKRP  144 (207)
T ss_pred             EEEEecCCcccCccHHHHhcccCC-CCHHHHHHHh---------h---------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence            999999999999999999976432 2222222211         1         34567899999999999999999999


Q ss_pred             CEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecC
Q 000856          523 KILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT  584 (1252)
Q Consensus       523 ~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~  584 (1252)
                      +++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus       145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~  206 (207)
T cd03369         145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH  206 (207)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence            99999999999999999999999998877899999999999997799999999999998775

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.1e-40  Score=370.31  Aligned_cols=217  Identities=32%  Similarity=0.504  Sum_probs=182.7

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC-----CcEEEECCccccCC--CHH
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-----AGHVLLDNVDIKTL--QLR  437 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~-----~G~i~~~g~~~~~~--~~~  437 (1252)
                      ++++|++++|++   ..+++|+||+|++||+++|+||||||||||+++|+|+++|+     +|+|.++|.++...  +..
T Consensus         2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~   78 (247)
T TIGR00972         2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV   78 (247)
T ss_pred             EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence            789999999974   34899999999999999999999999999999999999998     99999999998753  345


Q ss_pred             HHhhhceEEccCCCCchhcHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHhhCCCCcc----ccccCCCCCCChHHHH
Q 000856          438 WLRDQIGLVNQEPALFATTILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYS----TQVGERGVQLSGGQKQ  510 (1252)
Q Consensus       438 ~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~g~~LSgGqkq  510 (1252)
                      .++++++|++|++.+++.|++||+.++...   ....+...     .+.+.++.+  |+.    ...+..+.+|||||||
T Consensus        79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~q  151 (247)
T TIGR00972        79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE-----IVEESLKKA--ALWDEVKDRLHDSALGLSGGQQQ  151 (247)
T ss_pred             HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHc--CCCcchhhHhhCCcccCCHHHHH
Confidence            667889999999999889999999875321   11111111     112233333  443    4566778899999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHH
Q 000856          511 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI  589 (1252)
Q Consensus       511 Rv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~  589 (1252)
                      |++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  231 (247)
T TIGR00972       152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF  231 (247)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999998767899999999999865 8999999999999999998876


Q ss_pred             hc
Q 000856          590 AK  591 (1252)
Q Consensus       590 ~~  591 (1252)
                      ..
T Consensus       232 ~~  233 (247)
T TIGR00972       232 TN  233 (247)
T ss_pred             hC
Confidence            43

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-40  Score=370.90  Aligned_cols=224  Identities=31%  Similarity=0.533  Sum_probs=190.8

Q ss_pred             ccccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCcccC---
Q 000856         1006 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIR--- 1077 (1252)
Q Consensus      1006 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-----~~G~I~idG~di~--- 1077 (1252)
                      ..+.|+++|++++|++   .++|+|+||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.+||.++.   
T Consensus        13 ~~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~   89 (265)
T PRK14252         13 TQQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS   89 (265)
T ss_pred             CCceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence            3467999999999963   3699999999999999999999999999999999999975     7999999998874   


Q ss_pred             -CCCHHHHhcccEEEccccccCcccHHHHhccCCC--C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 000856         1078 -RLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 1149 (1252)
Q Consensus      1078 -~~~~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~-----~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~L 1149 (1252)
                       ......+|++++|+||++.+|.+|++||+.++..  .     ..++++.++++.+++.+.+.       .........|
T Consensus        90 ~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~L  162 (265)
T PRK14252         90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNL  162 (265)
T ss_pred             cccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccC
Confidence             3345678899999999999999999999986421  1     12456677777777654332       2233445679


Q ss_pred             ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEeCCEEEEec
Q 000856         1150 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1150 SgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G 1228 (1252)
                      |||||||++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus       163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g  242 (265)
T PRK14252        163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG  242 (265)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence            99999999999999999999999999999999999999999999877789999999999986 58999999999999999


Q ss_pred             ChhhhhcCCCc
Q 000856         1229 SHSELVSRPDG 1239 (1252)
Q Consensus      1229 ~~~eLl~~~~g 1239 (1252)
                      +++++...+..
T Consensus       243 ~~~~~~~~~~~  253 (265)
T PRK14252        243 ATDTIFIKPKN  253 (265)
T ss_pred             CHHHHHhCCCC
Confidence            99999765433

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-40  Score=374.05  Aligned_cols=220  Identities=31%  Similarity=0.509  Sum_probs=185.7

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .++++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus         5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i   83 (279)
T PRK13635          5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV   83 (279)
T ss_pred             eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence            48999999999642 24599999999999999999999999999999999999999999999999999887777778889


Q ss_pred             eEEccCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000856          444 GLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       444 ~~v~Q~~--~l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~  519 (1252)
                      +|++|++  .+++.|++||+.++...  ....+...     .+.+.+..+  |+.........+||||||||++|||||+
T Consensus        84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~laral~  156 (279)
T PRK13635         84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE-----RVDQALRQV--GMEDFLNREPHRLSGGQKQRVAIAGVLA  156 (279)
T ss_pred             EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHH-----HHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence            9999998  35567999999886321  12211111     112223332  5555566677799999999999999999


Q ss_pred             cCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhc
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       520 ~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      .+|+++||||||++||+.+++.+.+.|.++.+  |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus       157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  230 (279)
T PRK13635        157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS  230 (279)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence            99999999999999999999999999998863  7999999999999988999999999999999999888654

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=1.3e-40  Score=379.63  Aligned_cols=213  Identities=28%  Similarity=0.465  Sum_probs=181.6

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .|+++||+++|++   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+++
T Consensus         4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i   79 (303)
T TIGR01288         4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI   79 (303)
T ss_pred             EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence            4899999999963   3599999999999999999999999999999999999999999999999998654 35678899


Q ss_pred             EEEccccccCc-ccHHHHhccCC--CCCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 000856         1089 GLVQQEPALFA-ASIFDNIAYGK--EGATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161 (1252)
Q Consensus      1089 ~~VpQd~~lf~-gTIreNl~~~~--~~~~de----ei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 1161 (1252)
                      +|+||++.+|. .|++||+.+..  ...+.+    .+.++++..++.+       .+++.+    ..||||||||++|||
T Consensus        80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-------~~~~~~----~~LSgG~~qrv~la~  148 (303)
T TIGR01288        80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADVRV----ALLSGGMKRRLTLAR  148 (303)
T ss_pred             EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------HhcCch----hhCCHHHHHHHHHHH
Confidence            99999998884 69999997421  122332    2334455555433       344444    369999999999999


Q ss_pred             HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1162 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1162 ALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      ||+++|++|||||||++||+.+...+++.|++.. +++|||++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus       149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  225 (303)
T TIGR01288       149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE  225 (303)
T ss_pred             HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence            9999999999999999999999999999999875 4789999999999986 4899999999999999999999754

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=1.2e-40  Score=364.61  Aligned_cols=216  Identities=31%  Similarity=0.465  Sum_probs=179.6

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHH-hhhc
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQI  443 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~i  443 (1252)
                      |+++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++++
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (222)
T cd03224           1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI   77 (222)
T ss_pred             CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence            478999999964   358999999999999999999999999999999999999999999999999877766543 5679


Q ss_pred             eEEccCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000856          444 GLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP  522 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~  522 (1252)
                      +|++|++.++.. |++||+.++.......+...  +   +.+.++.++ +++...+..+.+||||||||++|||||+.+|
T Consensus        78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~--~---~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p  151 (222)
T cd03224          78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKA--R---LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP  151 (222)
T ss_pred             EEeccccccCCCCcHHHHHHHHhhhcCchhHHH--H---HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence            999999998886 99999987643221111111  1   111222221 2334456677899999999999999999999


Q ss_pred             CEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHH
Q 000856          523 KILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI  589 (1252)
Q Consensus       523 ~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~  589 (1252)
                      +++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus       152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  220 (222)
T cd03224         152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL  220 (222)
T ss_pred             CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence            9999999999999999999999999875 58999999999999866 8999999999999999887764

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=7.5e-41  Score=365.45  Aligned_cols=215  Identities=25%  Similarity=0.466  Sum_probs=179.2

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      |+++|++++|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus         1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~   78 (220)
T cd03263           1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG   78 (220)
T ss_pred             CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence            4789999999642 145999999999999999999999999999999999999999999999999886543 55677899


Q ss_pred             EEccCCCCch-hcHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          445 LVNQEPALFA-TTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       445 ~v~Q~~~l~~-~tv~~ni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      |++|++.++. .|++||+.++..  .....+...     .+.+.++.+  |+....+....+||||||||++||||++.+
T Consensus        79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~  151 (220)
T cd03263          79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG  151 (220)
T ss_pred             EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence            9999999884 599999986421  111111111     122333333  454445666789999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      |+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~  219 (220)
T cd03263         152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL  219 (220)
T ss_pred             CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence            9999999999999999999999999998777999999999999976 899999999999999988764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-40  Score=370.75  Aligned_cols=219  Identities=33%  Similarity=0.521  Sum_probs=185.5

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCcccCC--CCH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--LNL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-----~~G~I~idG~di~~--~~~ 1081 (1252)
                      .++++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|.|+++|     ++|+|.+||.++..  .+.
T Consensus         4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~   80 (258)
T PRK14241          4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP   80 (258)
T ss_pred             cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence            4899999999963   3599999999999999999999999999999999999974     69999999999853  455


Q ss_pred             HHHhcccEEEccccccCc-ccHHHHhccCC---CCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 000856         1082 KSLRLKIGLVQQEPALFA-ASIFDNIAYGK---EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 1153 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~-gTIreNl~~~~---~~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQ 1153 (1252)
                      ..+|+.++|++|++.+|. .|+++|+.++.   ...+    ++.+.++++..++.+.+..       .......+|||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~  153 (258)
T PRK14241         81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD-------RLDKPGGGLSGGQ  153 (258)
T ss_pred             HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHH
Confidence            678899999999999887 59999997542   1111    2345667777777543321       1223345799999


Q ss_pred             HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEe------CCEEEE
Q 000856         1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQ------DGRIVE 1226 (1252)
Q Consensus      1154 rQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~------~G~Ive 1226 (1252)
                      |||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|+      +|+|++
T Consensus       154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~  233 (258)
T PRK14241        154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE  233 (258)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence            9999999999999999999999999999999999999998866789999999999985 589999996      899999


Q ss_pred             ecChhhhhcCC
Q 000856         1227 QGSHSELVSRP 1237 (1252)
Q Consensus      1227 ~G~~~eLl~~~ 1237 (1252)
                      .|++++++..+
T Consensus       234 ~~~~~~~~~~~  244 (258)
T PRK14241        234 IDDTEKIFSNP  244 (258)
T ss_pred             cCCHHHHHhCc
Confidence            99999998653

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-40  Score=371.41  Aligned_cols=214  Identities=29%  Similarity=0.458  Sum_probs=188.2

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcc
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1087 (1252)
                      ..|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.
T Consensus         6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   82 (265)
T PRK10253          6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR   82 (265)
T ss_pred             cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence            46999999999963   359999999999999999999999999999999999999999999999999988888888889


Q ss_pred             cEEEccccccCc-ccHHHHhccCC-CC---------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 000856         1088 IGLVQQEPALFA-ASIFDNIAYGK-EG---------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 1156 (1252)
Q Consensus      1088 i~~VpQd~~lf~-gTIreNl~~~~-~~---------~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1156 (1252)
                      ++|+||++.+|. .|+++|+.++. +.         ..++.+.++++..++.++...           ....||||||||
T Consensus        83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qr  151 (265)
T PRK10253         83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----------SVDTLSGGQRQR  151 (265)
T ss_pred             eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCChHHHHH
Confidence            999999998874 69999998642 10         123456778888888665433           235799999999


Q ss_pred             HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhh
Q 000856         1157 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1157 laLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ++||||++++|++|||||||++||+.+...+.+.|+++.+  ++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus       152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  231 (265)
T PRK10253        152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI  231 (265)
T ss_pred             HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999998753  789999999999875 4899999999999999999998


Q ss_pred             hc
Q 000856         1234 VS 1235 (1252)
Q Consensus      1234 l~ 1235 (1252)
                      ..
T Consensus       232 ~~  233 (265)
T PRK10253        232 VT  233 (265)
T ss_pred             hh
Confidence            75

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-40  Score=368.07  Aligned_cols=221  Identities=35%  Similarity=0.583  Sum_probs=188.1

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCcccC-CCCHH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIR-RLNLK 1082 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-----~~G~I~idG~di~-~~~~~ 1082 (1252)
                      .++++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.+||.++. ..+..
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~   79 (249)
T PRK14253          3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA   79 (249)
T ss_pred             eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence            4889999999963   3599999999999999999999999999999999999986     5999999999985 45667


Q ss_pred             HHhcccEEEccccccCcccHHHHhccCCC--CCC-----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHH
Q 000856         1083 SLRLKIGLVQQEPALFAASIFDNIAYGKE--GAT-----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQ 1155 (1252)
Q Consensus      1083 ~lR~~i~~VpQd~~lf~gTIreNl~~~~~--~~~-----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQ 1155 (1252)
                      .+|+.++|+||++.+|..|++||+.++..  ...     ++++.++++.+++.+.+.   +.++    .....|||||||
T Consensus        80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~----~~~~~LS~G~~q  152 (249)
T PRK14253         80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK---DRLK----SHAFGLSGGQQQ  152 (249)
T ss_pred             HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh---HHhh----cCcccCCHHHHH
Confidence            78899999999999999999999986521  111     234456667777654432   1223    334579999999


Q ss_pred             HHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhh
Q 000856         1156 RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1156 rlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      |++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|+|++.|+++++.
T Consensus       153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  232 (249)
T PRK14253        153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF  232 (249)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999998777899999999999875 8999999999999999999987


Q ss_pred             cCCCc
Q 000856         1235 SRPDG 1239 (1252)
Q Consensus      1235 ~~~~g 1239 (1252)
                      .++..
T Consensus       233 ~~~~~  237 (249)
T PRK14253        233 SNPKD  237 (249)
T ss_pred             cCCCC
Confidence            65433

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=2.4e-40  Score=360.54  Aligned_cols=210  Identities=32%  Similarity=0.477  Sum_probs=187.0

Q ss_pred             EEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCH----HHHhc
Q 000856         1011 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL----KSLRL 1086 (1252)
Q Consensus      1011 ~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~----~~lR~ 1086 (1252)
                      .+.|++|+|+..  .++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+.    ...|+
T Consensus         2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   79 (218)
T cd03290           2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY   79 (218)
T ss_pred             eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence            578999999743  469999999999999999999999999999999999999999999999998876542    34567


Q ss_pred             ccEEEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 000856         1087 KIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 1166 (1252)
Q Consensus      1087 ~i~~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 1166 (1252)
                      .++|++|++.+|+.|++||+.++.+ .++++..++++..++.+++..+|.|+++.++....+||||||||++||||++++
T Consensus        80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~  158 (218)
T cd03290          80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN  158 (218)
T ss_pred             eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence            8999999999999999999987643 356667888899999998998999999999888899999999999999999999


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHH--HHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCE
Q 000856         1167 PAILLLDEATSALDAESECVLQE--ALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGR 1223 (1252)
Q Consensus      1167 p~ILiLDEpTS~LD~~te~~i~~--~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 1223 (1252)
                      |++|||||||++||+.+...+.+  .++... .+.|+|++||+++.+..||++++|++|+
T Consensus       159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~  218 (218)
T cd03290         159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS  218 (218)
T ss_pred             CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence            99999999999999999999888  455443 3689999999999998899999999984

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-40  Score=374.23  Aligned_cols=214  Identities=34%  Similarity=0.602  Sum_probs=184.1

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCC--CCHHHHhcc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR--LNLKSLRLK 1087 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~--~~~~~lR~~ 1087 (1252)
                      |+++||+++|+.  ..++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..  .+...+|++
T Consensus         2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (275)
T PRK13639          2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT   79 (275)
T ss_pred             EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence            789999999963  2359999999999999999999999999999999999999999999999999852  334567899


Q ss_pred             cEEEcccc--ccCcccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 000856         1088 IGLVQQEP--ALFAASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 1159 (1252)
Q Consensus      1088 i~~VpQd~--~lf~gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 1159 (1252)
                      ++|+||++  .+|..|++||+.++..  ..+    .+++.++++..++.++...       .    ...|||||+||++|
T Consensus        80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-------~----~~~LS~Gq~qrv~l  148 (275)
T PRK13639         80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-------P----PHHLSGGQKKRVAI  148 (275)
T ss_pred             eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-------C----hhhCCHHHHHHHHH
Confidence            99999998  4788999999986421  122    2446677777777544332       2    34699999999999


Q ss_pred             HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1160 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1160 ARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      |||++.+|++|||||||++||+.+...+.+.|+++. +++|||++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus       149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  227 (275)
T PRK13639        149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD  227 (275)
T ss_pred             HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            999999999999999999999999999999999875 4789999999999986 5899999999999999999998764

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=1.1e-40  Score=369.25  Aligned_cols=217  Identities=33%  Similarity=0.547  Sum_probs=183.9

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      ++++|++++|++.  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   78 (242)
T cd03295           1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG   78 (242)
T ss_pred             CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence            4689999999741  35899999999999999999999999999999999999999999999999988777777788899


Q ss_pred             EEccCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccc--cccCCCCCCChHHHHHHHHHHHhc
Q 000856          445 LVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYST--QVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       445 ~v~Q~~~l~~-~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~g~~LSgGqkqRv~lARal~  519 (1252)
                      |++|++.++. .|++||+.++...  ....+.     ...+.+.++.+  |+..  ...+.+.+||||||||++|||||+
T Consensus        79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~  151 (242)
T cd03295          79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA  151 (242)
T ss_pred             EEccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence            9999999886 5999999875311  111111     11223444444  5553  567778899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       520 ~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      ++|+++||||||++||+.+++.+.+.|+++.  .|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus       152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  225 (242)
T cd03295         152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR  225 (242)
T ss_pred             cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence            9999999999999999999999999999885  38999999999998765 89999999999999999888754

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-40  Score=371.89  Aligned_cols=218  Identities=31%  Similarity=0.518  Sum_probs=181.8

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccccC--CCH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~~  436 (1252)
                      .|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  .+.
T Consensus         6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   82 (253)
T PRK14242          6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV   82 (253)
T ss_pred             EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence            5899999999963   358999999999999999999999999999999999974     689999999998864  344


Q ss_pred             HHHhhhceEEccCCCCchhcHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHH
Q 000856          437 RWLRDQIGLVNQEPALFATTILENILYGKPE--A-TM----AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK  509 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqk  509 (1252)
                      ..++++++|++|++.+|+.|++||+.++...  . ..    +++...++..++.+.       +....++.+.+||||||
T Consensus        83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq~  155 (253)
T PRK14242         83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDE-------VKDRLHESALGLSGGQQ  155 (253)
T ss_pred             HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchh-------hhHHhhCCcccCCHHHH
Confidence            5677889999999999988999999875311  1 11    122222222222111       12345677889999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       510 qRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      ||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  235 (253)
T PRK14242        156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI  235 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998778999999999999865 899999999999999999888


Q ss_pred             Hhc
Q 000856          589 IAK  591 (1252)
Q Consensus       589 ~~~  591 (1252)
                      ...
T Consensus       236 ~~~  238 (253)
T PRK14242        236 FTR  238 (253)
T ss_pred             HcC
Confidence            654

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=2e-40  Score=370.17  Aligned_cols=212  Identities=27%  Similarity=0.440  Sum_probs=185.8

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      ++++|++++|++   .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus         2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   78 (256)
T TIGR03873         2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA   78 (256)
T ss_pred             ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence            689999999963   36999999999999999999999999999999999999999999999999999888888888999


Q ss_pred             EEccccc-cCcccHHHHhccCCCC----------CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHH
Q 000856         1090 LVQQEPA-LFAASIFDNIAYGKEG----------ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 1158 (1252)
Q Consensus      1090 ~VpQd~~-lf~gTIreNl~~~~~~----------~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrla 1158 (1252)
                      |+||++. .+..|+++|+.++...          ..++++.++++..++.+....           ....||||||||++
T Consensus        79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~  147 (256)
T TIGR03873        79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMSTLSGGERQRVH  147 (256)
T ss_pred             EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHH
Confidence            9999985 5578999999765210          112356777777777654332           23469999999999


Q ss_pred             HHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhc
Q 000856         1159 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1159 LARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~ 1235 (1252)
                      ||||++.+|+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus       148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  226 (256)
T TIGR03873       148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT  226 (256)
T ss_pred             HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence            9999999999999999999999999999999999875 3789999999999994 589999999999999999998864

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-40  Score=368.14  Aligned_cols=224  Identities=31%  Similarity=0.489  Sum_probs=192.0

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCcccCC--CCH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--LNL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-----~~G~I~idG~di~~--~~~ 1081 (1252)
                      .+.+++++++|..   .++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.+||.++..  .+.
T Consensus         8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~   84 (261)
T PRK14263          8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP   84 (261)
T ss_pred             eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence            4889999999952   3699999999999999999999999999999999999987     79999999999864  344


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCCC-----CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKE-----GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 1156 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~~-----~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1156 (1252)
                      ..+|++++|+||++.+|..|++||+.++..     ....+++.++++.+++.+.+...       .++...+|||||+||
T Consensus        85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~LS~G~~qr  157 (261)
T PRK14263         85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLSLSGGQQQR  157 (261)
T ss_pred             HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-------hhCCcccCCHHHHHH
Confidence            567889999999999999999999987521     11235678888888876554322       234556799999999


Q ss_pred             HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEe--------CCEEEEe
Q 000856         1157 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQ--------DGRIVEQ 1227 (1252)
Q Consensus      1157 laLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~--------~G~Ive~ 1227 (1252)
                      ++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||||++|+        +|++++.
T Consensus       158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~  237 (261)
T PRK14263        158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM  237 (261)
T ss_pred             HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence            9999999999999999999999999999999999999877789999999999885 489999996        8999999


Q ss_pred             cChhhhhcCCCchhH
Q 000856         1228 GSHSELVSRPDGAYS 1242 (1252)
Q Consensus      1228 G~~~eLl~~~~g~y~ 1242 (1252)
                      |+++++++.+...+.
T Consensus       238 g~~~~~~~~~~~~~~  252 (261)
T PRK14263        238 GPTAQIFQNPREQLT  252 (261)
T ss_pred             CCHHHHHhCCCcHHH
Confidence            999999876443343

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=1.7e-40  Score=378.00  Aligned_cols=212  Identities=22%  Similarity=0.437  Sum_probs=185.1

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      ++++|++++|++   ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. +...+|++++
T Consensus         3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig   78 (301)
T TIGR03522         3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG   78 (301)
T ss_pred             EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence            789999999952   469999999999999999999999999999999999999999999999999876 4457889999


Q ss_pred             EEccccccCcc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~lf~g-TIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      |+||++.+|.+ |++||+.+...  ..+    .+++.++++..++.++..           .....||||||||++||||
T Consensus        79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la~a  147 (301)
T TIGR03522        79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH-----------KKIGQLSKGYRQRVGLAQA  147 (301)
T ss_pred             EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CchhhCCHHHHHHHHHHHH
Confidence            99999999876 99999975321  112    344566666666654432           2335799999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcC
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      |+++|++|||||||++||+.+...+++.|+++.+++|||++||+++.+.. ||||++|++|++++.|+++++.++
T Consensus       148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  222 (301)
T TIGR03522       148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA  222 (301)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence            99999999999999999999999999999998778999999999998865 899999999999999999998764

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.1e-41  Score=336.87  Aligned_cols=223  Identities=27%  Similarity=0.451  Sum_probs=191.2

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHH-hhh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQ  442 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~  442 (1252)
                      .+..+|+.++|.++   .+.+++||++++||+|++.||||+||||.+.++.|+.+|++|+|.+||.|++..+.... |-.
T Consensus         4 ~L~a~~l~K~y~kr---~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG   80 (243)
T COG1137           4 TLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG   80 (243)
T ss_pred             EEEehhhhHhhCCe---eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence            47899999999743   58999999999999999999999999999999999999999999999999999987654 447


Q ss_pred             ceEEccCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      |||+||+|.+|.. ||+|||....+... .......+...+.+.++.+  ++.+.....+..||||||+|+.|||||+.+
T Consensus        81 igYLpQE~SIFr~LtV~dNi~~vlE~~~-~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~  157 (243)
T COG1137          81 IGYLPQEASIFRKLTVEDNIMAVLEIRE-KDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAAN  157 (243)
T ss_pred             cccccccchHhhcCcHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcC
Confidence            9999999999987 99999986543211 1111122222334445555  677888889999999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccch-hccCEEEEEeCCEEEEecChHHHHhcc
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      |+.++||||++++||.+...|++.++.++ +|..|++..|+..+. .-|||.|++.+|++..+|+++|+.++.
T Consensus       158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~  230 (243)
T COG1137         158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE  230 (243)
T ss_pred             CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence            99999999999999999999999999986 588999999999875 559999999999999999999997763

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=2.2e-40  Score=363.71  Aligned_cols=208  Identities=27%  Similarity=0.444  Sum_probs=179.1

Q ss_pred             cEEEEeEEEECCCCCC-ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHH---H
Q 000856         1009 EIELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---L 1084 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~---l 1084 (1252)
                      -|+++|++++|++... .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...   .
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   85 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL   85 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence            4899999999964211 25999999999999999999999999999999999999999999999999998877654   2


Q ss_pred             -hcccEEEccccccCcc-cHHHHhccCC--CCC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 000856         1085 -RLKIGLVQQEPALFAA-SIFDNIAYGK--EGA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 1156 (1252)
Q Consensus      1085 -R~~i~~VpQd~~lf~g-TIreNl~~~~--~~~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1156 (1252)
                       +++++|+||++.+|.+ |++||+.++.  ...    ..+++.++++..++.++....|           ..||||||||
T Consensus        86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr  154 (228)
T PRK10584         86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR  154 (228)
T ss_pred             HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence             3679999999998874 9999997531  111    2345677788888876655443           4699999999


Q ss_pred             HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEecCchhhhccCEEEEEeCCEEEEe
Q 000856         1157 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-R-GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 1227 (1252)
Q Consensus      1157 laLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~-~~TvI~IaHrl~ti~~~DrI~vl~~G~Ive~ 1227 (1252)
                      ++|||||+++|++|||||||++||+.+...+.+.|++.. + ++|||+|||+++.+..||++++|++|+++|.
T Consensus       155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~  227 (228)
T PRK10584        155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE  227 (228)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence            999999999999999999999999999999999999874 2 7899999999999988999999999999864

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=2.7e-40  Score=370.61  Aligned_cols=229  Identities=26%  Similarity=0.444  Sum_probs=190.2

Q ss_pred             cEEEEeEEEECCCC------CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHH
Q 000856         1009 EIELRHVDFAYPSR------PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 1082 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~------~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~ 1082 (1252)
                      -|+++||+++|+..      .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~   83 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS   83 (267)
T ss_pred             eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence            48999999999531      124699999999999999999999999999999999999999999999999999765666


Q ss_pred             HHhcccEEEccccc--cCc-ccHHHHhccCC---CC----CCHHHHHHHHHHcCch-hhHhhCCCcCCCccCCCCCCCCh
Q 000856         1083 SLRLKIGLVQQEPA--LFA-ASIFDNIAYGK---EG----ATEAEVVEAARAANVH-GFVSALPNAYKTPVGERGVQLSG 1151 (1252)
Q Consensus      1083 ~lR~~i~~VpQd~~--lf~-gTIreNl~~~~---~~----~~deei~~al~~~~l~-~~i~~lp~gldt~vge~G~~LSg 1151 (1252)
                      ..+++++|+||++.  ++. -|+.+|+.+..   ..    ..++++.++++.+++. +...       ..    ...|||
T Consensus        84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~~LS~  152 (267)
T PRK15112         84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS-------YY----PHMLAP  152 (267)
T ss_pred             hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHh-------cC----chhcCH
Confidence            66778999999985  343 38888886421   11    1234577788888874 3322       22    246999


Q ss_pred             hHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000856         1152 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1152 GQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1228 (1252)
                      |||||++|||||+++|+||||||||++||+.+...+.+.|++..  .++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus       153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~  232 (267)
T PRK15112        153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG  232 (267)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence            99999999999999999999999999999999999999999875  37899999999999976 8999999999999999


Q ss_pred             ChhhhhcCCC-chhHHHHHHh
Q 000856         1229 SHSELVSRPD-GAYSRLLQLQ 1248 (1252)
Q Consensus      1229 ~~~eLl~~~~-g~y~~l~~~q 1248 (1252)
                      +++++.+.+. ..+++++...
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~  253 (267)
T PRK15112        233 STADVLASPLHELTKRLIAGH  253 (267)
T ss_pred             CHHHHhcCCCCHHHHHHHHhc
Confidence            9999987643 3456677644

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-40  Score=369.98  Aligned_cols=214  Identities=23%  Similarity=0.436  Sum_probs=181.6

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHH-hcc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RLK 1087 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~l-R~~ 1087 (1252)
                      .++++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |..
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (255)
T PRK11300          5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG   81 (255)
T ss_pred             eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence            4899999999963   469999999999999999999999999999999999999999999999999988776654 456


Q ss_pred             cEEEccccccCcc-cHHHHhccCCCCC-----------------C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCC
Q 000856         1088 IGLVQQEPALFAA-SIFDNIAYGKEGA-----------------T----EAEVVEAARAANVHGFVSALPNAYKTPVGER 1145 (1252)
Q Consensus      1088 i~~VpQd~~lf~g-TIreNl~~~~~~~-----------------~----deei~~al~~~~l~~~i~~lp~gldt~vge~ 1145 (1252)
                      ++|+||++.+|.+ |+++|+.++....                 .    .+.+.++++..++.           ......
T Consensus        82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~  150 (255)
T PRK11300         82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-----------EHANRQ  150 (255)
T ss_pred             eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-----------hhhhCC
Confidence            9999999999985 9999998742100                 0    11233344444443           333344


Q ss_pred             CCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCC
Q 000856         1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDG 1222 (1252)
Q Consensus      1146 G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G 1222 (1252)
                      ..+||||||||++||||++.+|++|||||||++||+.+...+.+.|.+..+  ++|||++||+++.+.. ||+|++|++|
T Consensus       151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g  230 (255)
T PRK11300        151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG  230 (255)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence            567999999999999999999999999999999999999999999998753  7899999999999855 8999999999


Q ss_pred             EEEEecChhhhhcC
Q 000856         1223 RIVEQGSHSELVSR 1236 (1252)
Q Consensus      1223 ~Ive~G~~~eLl~~ 1236 (1252)
                      ++++.|+++++.+.
T Consensus       231 ~i~~~~~~~~~~~~  244 (255)
T PRK11300        231 TPLANGTPEEIRNN  244 (255)
T ss_pred             eEEecCCHHHHhhC
Confidence            99999999998754

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=1.1e-40  Score=367.29  Aligned_cols=216  Identities=29%  Similarity=0.447  Sum_probs=183.6

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHH-Hhhhc
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQI  443 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i  443 (1252)
                      ++++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   77 (232)
T cd03218           1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI   77 (232)
T ss_pred             CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence            478999999964   35899999999999999999999999999999999999999999999999987766544 34679


Q ss_pred             eEEccCCCCchh-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000856          444 GLVNQEPALFAT-TILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-tv~~ni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~  520 (1252)
                      +|++|++.+++. |++||+.++.+..  ...+..     ..+.+.++.+  |++....+.+.+||||||||++||||++.
T Consensus        78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~  150 (232)
T cd03218          78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT  150 (232)
T ss_pred             EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence            999999998886 9999998753211  111111     1223445554  67766778888999999999999999999


Q ss_pred             CCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       521 ~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      +|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  222 (232)
T cd03218         151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA  222 (232)
T ss_pred             CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence            999999999999999999999999998875 48999999999988766 89999999999999999888754

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=100.00  E-value=1.7e-39  Score=408.72  Aligned_cols=109  Identities=32%  Similarity=0.492  Sum_probs=95.6

Q ss_pred             cCCC-ccCCCCCCCChhHHHHHHHHHHHccCC---CEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh
Q 000856         1137 AYKT-PVGERGVQLSGGQKQRIAIARAVLKNP---AILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR 1211 (1252)
Q Consensus      1137 gldt-~vge~G~~LSgGQrQrlaLARALl~~p---~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~ 1211 (1252)
                      |++. .++.....||||||||++|||+|+++|   +++||||||++||+.+...+.+.|+++. +|.|||+|+|+++.+.
T Consensus       818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~  897 (943)
T PRK00349        818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK  897 (943)
T ss_pred             CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence            4543 356667789999999999999999999   9999999999999999999999999875 5889999999999999


Q ss_pred             ccCEEEEE------eCCEEEEecChhhhhcCCCchhHHHH
Q 000856         1212 GVDCIGVV------QDGRIVEQGSHSELVSRPDGAYSRLL 1245 (1252)
Q Consensus      1212 ~~DrI~vl------~~G~Ive~G~~~eLl~~~~g~y~~l~ 1245 (1252)
                      .||+|++|      ++|+|++.|+++++.+.+++.-.+.+
T Consensus       898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l  937 (943)
T PRK00349        898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYL  937 (943)
T ss_pred             hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHH
Confidence            99999999      79999999999999987555433443

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-40  Score=380.12  Aligned_cols=227  Identities=24%  Similarity=0.374  Sum_probs=189.0

Q ss_pred             EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC----CCCceEEECCcccCCCCHHHH
Q 000856         1010 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD----PTAGKVMIDGKDIRRLNLKSL 1084 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~----p~~G~I~idG~di~~~~~~~l 1084 (1252)
                      ++++|++++|+... ...+|+||||+|++||++||+|+||||||||+++|+|+.+    |++|+|.+||+++.+++...+
T Consensus         4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~   83 (330)
T PRK15093          4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER   83 (330)
T ss_pred             EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence            79999999996321 2469999999999999999999999999999999999986    589999999999998887665


Q ss_pred             h----cccEEEcccccc--C-cccHHHHhccC---C---C----C--CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCC
Q 000856         1085 R----LKIGLVQQEPAL--F-AASIFDNIAYG---K---E----G--ATEAEVVEAARAANVHGFVSALPNAYKTPVGER 1145 (1252)
Q Consensus      1085 R----~~i~~VpQd~~l--f-~gTIreNl~~~---~---~----~--~~deei~~al~~~~l~~~i~~lp~gldt~vge~ 1145 (1252)
                      +    ++|+||||+|..  + ..|+.+|+...   .   .    .  ..++++.++++.+++.+.-..    +    ...
T Consensus        84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~----~----~~~  155 (330)
T PRK15093         84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA----M----RSF  155 (330)
T ss_pred             HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH----H----hCC
Confidence            3    479999999963  2 35888888531   0   0    0  113467788888888643111    1    122


Q ss_pred             CCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCC
Q 000856         1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDG 1222 (1252)
Q Consensus      1146 G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G 1222 (1252)
                      ...||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++.+  +.|+|+|||+++.+.. ||||+||++|
T Consensus       156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G  235 (330)
T PRK15093        156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG  235 (330)
T ss_pred             chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence            357999999999999999999999999999999999999999999998753  7899999999999965 8999999999


Q ss_pred             EEEEecChhhhhcCCCchhHHH
Q 000856         1223 RIVEQGSHSELVSRPDGAYSRL 1244 (1252)
Q Consensus      1223 ~Ive~G~~~eLl~~~~g~y~~l 1244 (1252)
                      +|+|.|+++++++++...|.+.
T Consensus       236 ~ive~g~~~~i~~~p~~~y~~~  257 (330)
T PRK15093        236 QTVETAPSKELVTTPHHPYTQA  257 (330)
T ss_pred             EEEEECCHHHHHhCCCCHHHHH
Confidence            9999999999998766678653

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=1.8e-40  Score=366.03  Aligned_cols=216  Identities=28%  Similarity=0.487  Sum_probs=184.0

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      ++++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++++
T Consensus         2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~   77 (236)
T TIGR03864         2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG   77 (236)
T ss_pred             EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence            689999999963   35899999999999999999999999999999999999999999999999987665543 35799


Q ss_pred             EEccCCCCc-hhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          445 LVNQEPALF-ATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       445 ~v~Q~~~l~-~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      |++|++.++ ..|++||+.++...  ....+..     ..+.+.++.+  |++...++.+.+||||||||++|||||+.+
T Consensus        78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~  150 (236)
T TIGR03864        78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR  150 (236)
T ss_pred             EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            999999875 56999999865321  1111111     1223445554  677777888889999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhc
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |+++||||||++||+.+++.+.+.|+++.  +|+|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus       151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  222 (236)
T TIGR03864       151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA  222 (236)
T ss_pred             CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence            99999999999999999999999999885  48999999999999988999999999999999999888654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-40  Score=365.25  Aligned_cols=214  Identities=29%  Similarity=0.470  Sum_probs=179.9

Q ss_pred             cEEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHH---H
Q 000856          364 NIEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW---L  439 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~  439 (1252)
                      .++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...   +
T Consensus         5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~   84 (233)
T PRK11629          5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL   84 (233)
T ss_pred             eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence            489999999997422 146899999999999999999999999999999999999999999999999998776543   3


Q ss_pred             h-hhceEEccCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 000856          440 R-DQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA  515 (1252)
Q Consensus       440 ~-~~i~~v~Q~~~l~~~-tv~~ni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lA  515 (1252)
                      + +.++|++|++.+++. |++||+.++..  .....+...     .+.+.++.+  |++....+.+.+||||||||++||
T Consensus        85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la  157 (233)
T PRK11629         85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAV--GLEHRANHRPSELSGGERQRVAIA  157 (233)
T ss_pred             HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence            3 579999999988876 99999987421  111111111     122344444  666667778889999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhccCEEEEEeCCEEEEecC
Q 000856          516 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT  584 (1252)
Q Consensus       516 Ral~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~  584 (1252)
                      ||++.+|+++||||||++||+.+++.+.+.|+++.  +|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus       158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~  228 (233)
T PRK11629        158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS  228 (233)
T ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence            99999999999999999999999999999999874  4899999999999998889999999999998775

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=1.9e-40  Score=380.60  Aligned_cols=213  Identities=28%  Similarity=0.472  Sum_probs=182.9

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      -|+++||+++|++   ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|+++
T Consensus        41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i  116 (340)
T PRK13536         41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI  116 (340)
T ss_pred             eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence            4999999999963   35999999999999999999999999999999999999999999999999997654 5678999


Q ss_pred             EEEccccccC-cccHHHHhccCCC--CCCHH----HHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 000856         1089 GLVQQEPALF-AASIFDNIAYGKE--GATEA----EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161 (1252)
Q Consensus      1089 ~~VpQd~~lf-~gTIreNl~~~~~--~~~de----ei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 1161 (1252)
                      +|+||++.+| ..|++||+.+...  ..+.+    .+.++++.+++       ++..++.++    +||||||||++|||
T Consensus       117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~~~~~----~LS~G~kqrv~lA~  185 (340)
T PRK13536        117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADARVS----DLSGGMKRRLTLAR  185 (340)
T ss_pred             EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chhhCCChh----hCCHHHHHHHHHHH
Confidence            9999999886 5799999975321  12222    23344454444       334455554    69999999999999


Q ss_pred             HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcC
Q 000856         1162 AVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1162 ALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      ||+++|++|||||||++||+.+...+++.|+++. +++|||++||+++.+.. ||+|++|++|+|++.|+++++.++
T Consensus       186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  262 (340)
T PRK13536        186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE  262 (340)
T ss_pred             HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence            9999999999999999999999999999999875 48999999999999864 899999999999999999999764

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-40  Score=374.86  Aligned_cols=219  Identities=27%  Similarity=0.489  Sum_probs=184.4

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCcccc--CCCHHHHhh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK--TLQLRWLRD  441 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~~  441 (1252)
                      .|+++|++++|++  +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.  ..+...+++
T Consensus         5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~   82 (283)
T PRK13636          5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE   82 (283)
T ss_pred             eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence            4899999999963  235899999999999999999999999999999999999999999999999984  234556788


Q ss_pred             hceEEccCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000856          442 QIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA  517 (1252)
Q Consensus       442 ~i~~v~Q~~--~l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARa  517 (1252)
                      .++|++|++  .+++.|++||+.++...  ...++....     +.+.++.+  |+.......+.+||||||||++||||
T Consensus        83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~lara  155 (283)
T PRK13636         83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV  155 (283)
T ss_pred             hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence            999999998  56788999999875321  122221111     12233333  55556677888999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          518 MLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       518 l~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |+.+|++|||||||++||+.++..+.+.|+++.+  |+|+|++||+++.+.. |||+++|++|++++.|+++++...
T Consensus       156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  232 (283)
T PRK13636        156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE  232 (283)
T ss_pred             HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            9999999999999999999999999999998853  8999999999999974 999999999999999999988654

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-40  Score=339.75  Aligned_cols=221  Identities=30%  Similarity=0.460  Sum_probs=191.7

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHH-Hhhh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQ  442 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~  442 (1252)
                      .++++|++..|+.   ..+|+++||++++||+++|+|+||+|||||+|+|+|+.+|.+|+|.++|+|++..++.. .|..
T Consensus         3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G   79 (237)
T COG0410           3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG   79 (237)
T ss_pred             ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence            4789999999974   45999999999999999999999999999999999999999999999999999998765 5667


Q ss_pred             ceEEccCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      |+||||.-.+|+. ||+||+..|......++..    ....++..+.+|. +....+.++.+|||||+|-+||||||+.+
T Consensus        80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~----~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~  154 (237)
T COG0410          80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ----ERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSR  154 (237)
T ss_pred             eEeCcccccchhhCcHHHHHhhhhhcccccccc----cccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence            9999999999977 9999999874322211111    1113344556664 77778889999999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhcc
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      |++|+|||||.+|-|.-.+.|.+.|+++++  +.||++|.++...... +||.|||++|+|+.+|+.+|+..+.
T Consensus       155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~  228 (237)
T COG0410         155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP  228 (237)
T ss_pred             CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence            999999999999999999999999999974  6799999999999865 8999999999999999999997653

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=2.4e-40  Score=358.83  Aligned_cols=201  Identities=31%  Similarity=0.536  Sum_probs=175.5

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++|++++|++   ..  .|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.  .|++++
T Consensus         1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~   73 (211)
T cd03298           1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS   73 (211)
T ss_pred             CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence            578999999963   22  39999999999999999999999999999999999999999999999987654  367899


Q ss_pred             EEccccccCcc-cHHHHhccCCC-C-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPALFAA-SIFDNIAYGKE-G-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~lf~g-TIreNl~~~~~-~-----~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      |+||++.+|.+ |++||+.++.. .     .+++++.++++..++.++....|           ..||||||||++||||
T Consensus        74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a  142 (211)
T cd03298          74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV  142 (211)
T ss_pred             EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence            99999999875 99999986532 1     23456788888888876665544           3699999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1228 (1252)
                      ++++|++|||||||++||+++...+.+.|++..  .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus       143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence            999999999999999999999999999999875  37899999999999865 8999999999998764

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-40  Score=369.31  Aligned_cols=222  Identities=28%  Similarity=0.501  Sum_probs=189.6

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC-----CceEEECCcccCC--CC
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT-----AGKVMIDGKDIRR--LN 1080 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~-----~G~I~idG~di~~--~~ 1080 (1252)
                      +.|+++||+++|++   ..+|+|+||+|++||++||+|+||||||||+++|+|+++|+     +|+|.+||.|+..  .+
T Consensus         6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~   82 (261)
T PRK14258          6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN   82 (261)
T ss_pred             ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence            46999999999963   25999999999999999999999999999999999999985     8999999999853  34


Q ss_pred             HHHHhcccEEEccccccCcccHHHHhccCC------CCCC-HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhH
Q 000856         1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGK------EGAT-EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ 1153 (1252)
Q Consensus      1081 ~~~lR~~i~~VpQd~~lf~gTIreNl~~~~------~~~~-deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQ 1153 (1252)
                      ...+|+.++|+||++.+|..|++||+.++.      +... ++.+.++++..++.+++..+       .......|||||
T Consensus        83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LSgGq  155 (261)
T PRK14258         83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHK-------IHKSALDLSGGQ  155 (261)
T ss_pred             hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhH-------hcCCcccCCHHH
Confidence            567889999999999999999999998641      1111 23466777888876654422       234456799999


Q ss_pred             HHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-ccCEEEEEeC-----CEEE
Q 000856         1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR-GVDCIGVVQD-----GRIV 1225 (1252)
Q Consensus      1154 rQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~-~~DrI~vl~~-----G~Iv 1225 (1252)
                      |||++|||||+++|++|||||||++||+++...+.+.|+++.  .++|+|+|||+++.+. .||+|++|++     |+++
T Consensus       156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~  235 (261)
T PRK14258        156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV  235 (261)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence            999999999999999999999999999999999999999853  4899999999999986 5799999999     9999


Q ss_pred             EecChhhhhcCCCc
Q 000856         1226 EQGSHSELVSRPDG 1239 (1252)
Q Consensus      1226 e~G~~~eLl~~~~g 1239 (1252)
                      +.|+++++.+.+..
T Consensus       236 ~~~~~~~~~~~~~~  249 (261)
T PRK14258        236 EFGLTKKIFNSPHD  249 (261)
T ss_pred             EeCCHHHHHhCCCC
Confidence            99999999876544

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-40  Score=369.37  Aligned_cols=218  Identities=29%  Similarity=0.446  Sum_probs=181.5

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccccC--CCH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--LQL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~~~  436 (1252)
                      .++++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..  .+.
T Consensus         7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   83 (254)
T PRK14273          7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI   83 (254)
T ss_pred             eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence            5899999999964   3489999999999999999999999999999999999997     48999999998753  234


Q ss_pred             HHHhhhceEEccCCCCchhcHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHH
Q 000856          437 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TM----AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK  509 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqk  509 (1252)
                      ..++++++|++|++.+++.|++||+.++....   ..    +++..+++..++.+       ++.......+.+||||||
T Consensus        84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgG~~  156 (254)
T PRK14273         84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWN-------EVKDKLNTNALSLSGGQQ  156 (254)
T ss_pred             HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCch-------hhHHHHhCCcccCCHHHH
Confidence            56778899999999998889999998763211   11    12222222222211       112234556789999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       510 qRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      ||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. |||+++|++|++++.|+++++
T Consensus       157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  236 (254)
T PRK14273        157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL  236 (254)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998778999999999999866 899999999999999999988


Q ss_pred             Hhc
Q 000856          589 IAK  591 (1252)
Q Consensus       589 ~~~  591 (1252)
                      ..+
T Consensus       237 ~~~  239 (254)
T PRK14273        237 FFN  239 (254)
T ss_pred             HhC
Confidence            653

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=2e-40  Score=346.76  Aligned_cols=172  Identities=42%  Similarity=0.712  Sum_probs=162.1

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++|++++|++. ..++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (173)
T cd03246           1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG   79 (173)
T ss_pred             CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence            4789999999642 235999999999999999999999999999999999999999999999999999988888999999


Q ss_pred             EEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 000856         1090 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 1169 (1252)
Q Consensus      1090 ~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~I 1169 (1252)
                      |++|++.+|++|++||+                                          ||||||||++||||++++|++
T Consensus        80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~  117 (173)
T cd03246          80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI  117 (173)
T ss_pred             EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999998                                          999999999999999999999


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEeCCEE
Q 000856         1170 LLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRI 1224 (1252)
Q Consensus      1170 LiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~~G~I 1224 (1252)
                      |||||||++||+.+...+.+.|++.. +++|+|++||+++.+..||+|++|++|++
T Consensus       118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i  173 (173)
T cd03246         118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV  173 (173)
T ss_pred             EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence            99999999999999999999998875 47899999999999988999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=2.3e-40  Score=361.81  Aligned_cols=210  Identities=25%  Similarity=0.456  Sum_probs=181.3

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      -|+++||+++|++   .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus         7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   83 (225)
T PRK10247          7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV   83 (225)
T ss_pred             eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence            4899999999963   3599999999999999999999999999999999999999999999999999988888889999


Q ss_pred             EEEccccccCcccHHHHhccCC---CC-CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 000856         1089 GLVQQEPALFAASIFDNIAYGK---EG-ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 1164 (1252)
Q Consensus      1089 ~~VpQd~~lf~gTIreNl~~~~---~~-~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl 1164 (1252)
                      +|+||++.+|+.|++||+.++.   .. ..++++.++++..++.+.          ........||||||||++|||||+
T Consensus        84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrv~laral~  153 (225)
T PRK10247         84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDT----------ILTKNIAELSGGEKQRISLIRNLQ  153 (225)
T ss_pred             EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChH----------HhcCCcccCCHHHHHHHHHHHHHh
Confidence            9999999999999999997531   11 123445566666666421          122334579999999999999999


Q ss_pred             cCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhccCEEEEEe-CCEEEEecChh
Q 000856         1165 KNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQ-DGRIVEQGSHS 1231 (1252)
Q Consensus      1165 ~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~~DrI~vl~-~G~Ive~G~~~ 1231 (1252)
                      ++|+++||||||++||+.+...+.+.|++..  .++|+|++||+++.+..||+|++|+ |+..+++|+|+
T Consensus       154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~  223 (225)
T PRK10247        154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE  223 (225)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence            9999999999999999999999999999875  3789999999999998899999995 66667889885

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=8.1e-41  Score=364.65  Aligned_cols=208  Identities=35%  Similarity=0.504  Sum_probs=174.3

Q ss_pred             EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHH----HH
Q 000856          365 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR----WL  439 (1252)
Q Consensus       365 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~----~~  439 (1252)
                      |+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..    ..
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   80 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR   80 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence            47899999996421 14589999999999999999999999999999999999999999999999998776532    24


Q ss_pred             hhhceEEccCCCCchh-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000856          440 RDQIGLVNQEPALFAT-TILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR  516 (1252)
Q Consensus       440 ~~~i~~v~Q~~~l~~~-tv~~ni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lAR  516 (1252)
                      +++++|++|++.+|.. |++||+.++....  ...+.     ...+.+.++.+  |++....+.+.+||||||||++|||
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~  153 (218)
T cd03255          81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR  153 (218)
T ss_pred             hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence            5679999999998876 9999998753211  11111     11223445554  6666667788899999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhccCEEEEEeCCEE
Q 000856          517 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQV  579 (1252)
Q Consensus       517 al~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i  579 (1252)
                      ||+.+|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+..||++++|++|++
T Consensus       154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i  218 (218)
T cd03255         154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI  218 (218)
T ss_pred             HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence            99999999999999999999999999999998854  8999999999999887899999999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=2.8e-40  Score=361.15  Aligned_cols=204  Identities=32%  Similarity=0.507  Sum_probs=175.1

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHH---Hhc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LRL 1086 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~---lR~ 1086 (1252)
                      |+++|++++|+.  +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+++...   +|+
T Consensus         2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   79 (222)
T PRK10908          2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR   79 (222)
T ss_pred             EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence            789999999942  236999999999999999999999999999999999999999999999999998776543   688


Q ss_pred             ccEEEcccccc-CcccHHHHhccCC--CCCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 000856         1087 KIGLVQQEPAL-FAASIFDNIAYGK--EGATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 1159 (1252)
Q Consensus      1087 ~i~~VpQd~~l-f~gTIreNl~~~~--~~~~d----eei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 1159 (1252)
                      .++|+||++.+ +..|++||+.++.  ...++    +++.++++..++.+.....           ...||||||||++|
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l  148 (222)
T PRK10908         80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNF-----------PIQLSGGEQQRVGI  148 (222)
T ss_pred             heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------chhCCHHHHHHHHH
Confidence            99999999986 5679999998642  12232    2355677777776554432           35799999999999


Q ss_pred             HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEE
Q 000856         1160 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVE 1226 (1252)
Q Consensus      1160 ARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive 1226 (1252)
                      |||++++|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus       149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            999999999999999999999999999999999874 47899999999999875 79999999999863

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.3e-40  Score=364.44  Aligned_cols=213  Identities=26%  Similarity=0.452  Sum_probs=181.1

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHH-Hhccc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS-LRLKI 1088 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~-lR~~i 1088 (1252)
                      ++++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+.+
T Consensus         4 l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   80 (241)
T PRK10895          4 LTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI   80 (241)
T ss_pred             EEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence            889999999963   36999999999999999999999999999999999999999999999999998877644 57889


Q ss_pred             EEEccccccCc-ccHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHH
Q 000856         1089 GLVQQEPALFA-ASIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 1160 (1252)
Q Consensus      1089 ~~VpQd~~lf~-gTIreNl~~~~~---~~~d----eei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLA 1160 (1252)
                      +|+||++.+|. .|++||+.++..   ..+.    +.+.+.++..++.           .........||||||||++||
T Consensus        81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la  149 (241)
T PRK10895         81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-----------HLRDSMGQSLSGGERRRVEIA  149 (241)
T ss_pred             EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-----------HHhhcchhhCCHHHHHHHHHH
Confidence            99999999887 599999986421   1122    2234444444443           223344567999999999999


Q ss_pred             HHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1161 RAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1161 RALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      ||++++|++|||||||++||+.+...+.+.+++.. +++|+|++||+++.+. .||+|++|++|++++.|++++++..
T Consensus       150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~  227 (241)
T PRK10895        150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD  227 (241)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence            99999999999999999999999999999998865 4889999999998774 5899999999999999999998753

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-40  Score=362.23  Aligned_cols=209  Identities=33%  Similarity=0.532  Sum_probs=184.0

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++||+++|+.   .  ..|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.  .++.++
T Consensus         2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~   74 (232)
T PRK10771          2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVS   74 (232)
T ss_pred             eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEE
Confidence            689999999962   2  249999999999999999999999999999999999999999999999886654  357899


Q ss_pred             EEccccccCcc-cHHHHhccCC-CC-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPALFAA-SIFDNIAYGK-EG-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~lf~g-TIreNl~~~~-~~-----~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      |+||++.+|.+ |++||+.++. +.     ..++++.++++..++.+++...|           ..||||||||++||||
T Consensus        75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara  143 (232)
T PRK10771         75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC  143 (232)
T ss_pred             EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence            99999999975 9999998642 11     12456788899999887766554           3699999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcC
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      ++++|+++||||||++||+.+...+.+.|+++.+  ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus       144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~  220 (232)
T PRK10771        144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG  220 (232)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999999999999999999999999999998753  7899999999999865 899999999999999999999865

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=3.6e-40  Score=362.89  Aligned_cols=211  Identities=33%  Similarity=0.598  Sum_probs=184.9

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++|++++|++    ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+.  .|+.++
T Consensus         1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~   74 (235)
T cd03299           1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS   74 (235)
T ss_pred             CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence            478999999952    37999999999999999999999999999999999999999999999999987654  368899


Q ss_pred             EEccccccCc-ccHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPALFA-ASIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~lf~-gTIreNl~~~~~--~~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      ++||++.+|. .|++||+.++..  ..    .++++.++++..++.+++...+           ..||||||||++||||
T Consensus        75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara  143 (235)
T cd03299          75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARA  143 (235)
T ss_pred             EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHH
Confidence            9999999885 799999986421  11    2345677788888876655443           4699999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcCC
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRP 1237 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~~ 1237 (1252)
                      ++++|++|+|||||++||+.+.+.+.+.|++...  ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus       144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~  221 (235)
T cd03299         144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP  221 (235)
T ss_pred             HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence            9999999999999999999999999999998753  8999999999999865 8999999999999999999998764

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=1.4e-40  Score=362.71  Aligned_cols=211  Identities=27%  Similarity=0.442  Sum_probs=177.0

Q ss_pred             EEEEeEEEECCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          365 IEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      ++++|++++|++... .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ....+++++
T Consensus         2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i   80 (218)
T cd03266           2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL   80 (218)
T ss_pred             eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence            689999999975311 259999999999999999999999999999999999999999999999998875 345667889


Q ss_pred             eEEccCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000856          444 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~  520 (1252)
                      +|++|++.+|.. |++||+.+....  ....+...     .+.+.++.+  |++....+.+.+||||||||++||||++.
T Consensus        81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~  153 (218)
T cd03266          81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH  153 (218)
T ss_pred             EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence            999999999885 999999764211  11111111     122344444  66666777888999999999999999999


Q ss_pred             CCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEec
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG  583 (1252)
Q Consensus       521 ~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g  583 (1252)
                      +|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~  218 (218)
T cd03266         154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG  218 (218)
T ss_pred             CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence            999999999999999999999999999885 48999999999999866 8999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=1.3e-40  Score=363.09  Aligned_cols=213  Identities=27%  Similarity=0.443  Sum_probs=177.1

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      |+++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus         1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~   76 (220)
T cd03265           1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG   76 (220)
T ss_pred             CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence            478999999964   3589999999999999999999999999999999999999999999999887653 345677899


Q ss_pred             EEccCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          445 LVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       445 ~v~Q~~~l~~~-tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      |++|++.+++. |++||+.++...  ....+...     .+.+.++.+  |++........+||||||||++||||++.+
T Consensus        77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~  149 (220)
T cd03265          77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RIDELLDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHR  149 (220)
T ss_pred             EecCCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            99999988875 999999864211  11111111     112333343  454445666779999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHHHHHHhc-C-CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      |+++||||||++||+.+++.+.+.|.++. + |+|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  219 (220)
T cd03265         150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL  219 (220)
T ss_pred             CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence            99999999999999999999999999875 3 7899999999999876 899999999999999887664

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-40  Score=369.37  Aligned_cols=219  Identities=32%  Similarity=0.524  Sum_probs=183.4

Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccccC--CC
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQ  435 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~  435 (1252)
                      +.++++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  .+
T Consensus        12 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~   88 (260)
T PRK10744         12 SKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD   88 (260)
T ss_pred             ceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence            46899999999964   358999999999999999999999999999999999986     589999999998853  34


Q ss_pred             HHHHhhhceEEccCCCCchhcHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHH
Q 000856          436 LRWLRDQIGLVNQEPALFATTILENILYGKPE---ATMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQ  508 (1252)
Q Consensus       436 ~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGq  508 (1252)
                      ...++++++|++|++.+++.|++||+.++...   .+.+    ++.++++..++       ..++....++.+.+|||||
T Consensus        89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~LS~Gq  161 (260)
T PRK10744         89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAAL-------WNEVKDKLHQSGYSLSGGQ  161 (260)
T ss_pred             hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCC-------ChhhHHHHhcCCCCCCHHH
Confidence            55678899999999999889999999875321   1221    12222222221       1122345667788999999


Q ss_pred             HHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHH
Q 000856          509 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEE  587 (1252)
Q Consensus       509 kqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~  587 (1252)
                      |||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.++
T Consensus       162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  241 (260)
T PRK10744        162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT  241 (260)
T ss_pred             HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            99999999999999999999999999999999999999998778899999999999865 89999999999999999988


Q ss_pred             HHhc
Q 000856          588 LIAK  591 (1252)
Q Consensus       588 l~~~  591 (1252)
                      +...
T Consensus       242 ~~~~  245 (260)
T PRK10744        242 IFTK  245 (260)
T ss_pred             HHhC
Confidence            8653

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=1.8e-40  Score=380.77  Aligned_cols=217  Identities=29%  Similarity=0.477  Sum_probs=182.6

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...++.|
T Consensus        41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i  116 (340)
T PRK13536         41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI  116 (340)
T ss_pred             eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence            5999999999974   35999999999999999999999999999999999999999999999999987544 4567789


Q ss_pred             eEEccCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000856          444 GLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       444 ~~v~Q~~~l~~-~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~  520 (1252)
                      +|+||++.++. .|++||+.+....  ....+....+     .+.++.+  |+.........+||||||||++|||||+.
T Consensus       117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~~  189 (340)
T PRK13536        117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADARVSDLSGGMKRRLTLARALIN  189 (340)
T ss_pred             EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence            99999999875 4999999753211  1112211111     1223322  45555566778999999999999999999


Q ss_pred             CCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       521 ~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +|+++||||||++||+.+++.+++.|+++. .|+|||++||+++++.. ||+|++|++|+++..|+++++.+.
T Consensus       190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~  262 (340)
T PRK13536        190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE  262 (340)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence            999999999999999999999999999885 48999999999999976 899999999999999999998654

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.7e-40  Score=367.54  Aligned_cols=223  Identities=30%  Similarity=0.494  Sum_probs=187.2

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC--C---CCceEEECCcccCC--CCH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD--P---TAGKVMIDGKDIRR--LNL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~--p---~~G~I~idG~di~~--~~~ 1081 (1252)
                      -|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++  |   ++|+|.+||.++..  .+.
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   81 (252)
T PRK14255          5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV   81 (252)
T ss_pred             eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence            4899999999963   369999999999999999999999999999999999975  4   59999999999864  345


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCC--CCC-C----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGK--EGA-T----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~--~~~-~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      ..+|++++|+||++.+|..|+++|+.++.  ... .    ++++.++++.+++.+.+.       .........||||||
T Consensus        82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~  154 (252)
T PRK14255         82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ  154 (252)
T ss_pred             HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence            56788999999999999999999998642  111 1    234566667776654332       112333457999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||++||||++++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.+.
T Consensus       155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  234 (252)
T PRK14255        155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM  234 (252)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999988767899999999999864 899999999999999999999


Q ss_pred             hcCCCchh
Q 000856         1234 VSRPDGAY 1241 (1252)
Q Consensus      1234 l~~~~g~y 1241 (1252)
                      ...+...+
T Consensus       235 ~~~~~~~~  242 (252)
T PRK14255        235 FLNPKEKE  242 (252)
T ss_pred             hcCCCChH
Confidence            87654433

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=7.9e-41  Score=345.51  Aligned_cols=221  Identities=30%  Similarity=0.486  Sum_probs=191.1

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHH-hhh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQ  442 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~  442 (1252)
                      -+++++++++|++   ..+++|+||++++||+++|+|||||||||++|+|+|+|+|++|+|.++|+|+...++..+ |..
T Consensus         4 lL~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G   80 (250)
T COG0411           4 LLEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG   80 (250)
T ss_pred             eeeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence            3679999999974   459999999999999999999999999999999999999999999999999999987764 456


Q ss_pred             ceEEccCCCCchh-cHHHHHhcCCCC------------CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHH
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPE------------ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK  509 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-tv~~ni~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqk  509 (1252)
                      |+--||.+.+|++ ||.||+..+...            ...++-+..   ..+.+.++.+  |+....++...+||+|||
T Consensus        81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~---e~A~~~Le~v--gL~~~a~~~A~~LsyG~q  155 (250)
T COG0411          81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR---ERARELLEFV--GLGELADRPAGNLSYGQQ  155 (250)
T ss_pred             ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHH---HHHHHHHHHc--CCchhhcchhhcCChhHh
Confidence            9999999999977 999999876221            101111111   1223444444  888888999999999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChH
Q 000856          510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE  586 (1252)
Q Consensus       510 qRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~  586 (1252)
                      +|+.|||||+.+|++|+||||.++|.+.....+.+.|+++++  |.|+++|.||++.+.. ||||+||+.|+++.+|+|+
T Consensus       156 R~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~  235 (250)
T COG0411         156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE  235 (250)
T ss_pred             HHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHH
Confidence            999999999999999999999999999999999999999974  5999999999999977 8999999999999999999


Q ss_pred             HHHhcc
Q 000856          587 ELIAKA  592 (1252)
Q Consensus       587 ~l~~~~  592 (1252)
                      |+.++.
T Consensus       236 eV~~dp  241 (250)
T COG0411         236 EVRNNP  241 (250)
T ss_pred             HHhcCH
Confidence            987653

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-40  Score=372.47  Aligned_cols=222  Identities=27%  Similarity=0.443  Sum_probs=185.8

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .++++|++++|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i   83 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI   83 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence            48999999999743334589999999999999999999999999999999999999999999999998877767778899


Q ss_pred             eEEccCCC--CchhcHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000856          444 GLVNQEPA--LFATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       444 ~~v~Q~~~--l~~~tv~~ni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~  519 (1252)
                      +|++|+|.  ++..|+.||+.++..  ....++..+.     +.+.++.+  |+.......+.+||||||||++|||||+
T Consensus        84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lAraL~  156 (277)
T PRK13642         84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR-----VDEALLAV--NMLDFKTREPARLSGGQKQRVAVAGIIA  156 (277)
T ss_pred             EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence            99999984  556799999987532  1122222111     11222222  4444455667899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhcc
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       520 ~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      .+|+++||||||++||+.+++.+.+.+.++.+  |+|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus       157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  231 (277)
T PRK13642        157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS  231 (277)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence            99999999999999999999999999998853  89999999999999889999999999999999999886543

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=1.6e-39  Score=363.45  Aligned_cols=216  Identities=27%  Similarity=0.449  Sum_probs=190.2

Q ss_pred             CcccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHh
Q 000856          361 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR  440 (1252)
Q Consensus       361 ~~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~  440 (1252)
                      ..+.|+++|+++..     .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|            
T Consensus        36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------   98 (282)
T cd03291          36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------   98 (282)
T ss_pred             CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------
Confidence            34579999999962     2489999999999999999999999999999999999999999999998            


Q ss_pred             hhceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000856          441 DQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       441 ~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~  520 (1252)
                       .++|++|++.+++.|++||+.++... ...++...++..++.+.+..+|.+.++.+++.+.+||||||||++|||||+.
T Consensus        99 -~i~yv~q~~~l~~~tv~enl~~~~~~-~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~  176 (282)
T cd03291          99 -RISFSSQFSWIMPGTIKENIIFGVSY-DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK  176 (282)
T ss_pred             -EEEEEeCcccccccCHHHHhhccccc-CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence             49999999999999999999986432 2334455566677788888899999888999999999999999999999999


Q ss_pred             CCCEEEEeCCCCCCChHhHHHHHHHH-HHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhcccch
Q 000856          521 NPKILLLDEATSALDAGSESIVQEAL-DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAY  595 (1252)
Q Consensus       521 ~~~illlDEpts~LD~~~~~~~~~~l-~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~  595 (1252)
                      +|+++||||||++||+.+++.+.+.+ ..+.++.|+|++||+++.+..||++++|++|++++.|+++++.+....|
T Consensus       177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~  252 (282)
T cd03291         177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDF  252 (282)
T ss_pred             CCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHH
Confidence            99999999999999999999888754 5666689999999999999889999999999999999999987654333

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.4e-40  Score=365.35  Aligned_cols=227  Identities=30%  Similarity=0.505  Sum_probs=191.1

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEEC------CcccCCCCHH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID------GKDIRRLNLK 1082 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~id------G~di~~~~~~ 1082 (1252)
                      .++++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++      |.++.+.+..
T Consensus        10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~   86 (257)
T PRK14246         10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI   86 (257)
T ss_pred             heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence            5999999999963   359999999999999999999999999999999999999999666655      5777777777


Q ss_pred             HHhcccEEEccccccCcc-cHHHHhccCCC--C-CCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1083 SLRLKIGLVQQEPALFAA-SIFDNIAYGKE--G-ATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1083 ~lR~~i~~VpQd~~lf~g-TIreNl~~~~~--~-~~d----eei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      .+|++++|+||++.+|.+ |+++|+.++..  . ..+    +.+.++++..++.+++..       .....+..||+|||
T Consensus        87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~LS~G~~  159 (257)
T PRK14246         87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-------RLNSPASQLSGGQQ  159 (257)
T ss_pred             HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-------hhcCCcccCCHHHH
Confidence            889999999999999875 99999986421  1 122    234566677777544311       12234557999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh-hccCEEEEEeCCEEEEecChhhh
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSEL 1233 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti-~~~DrI~vl~~G~Ive~G~~~eL 1233 (1252)
                      ||++||||++++|++|||||||++||..++..+.+.|++..+++|+|++||+++.+ ..||++++|++|++++.|+++++
T Consensus       160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~  239 (257)
T PRK14246        160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI  239 (257)
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence            99999999999999999999999999999999999999887779999999999998 45899999999999999999999


Q ss_pred             hcCCCchhHHHH
Q 000856         1234 VSRPDGAYSRLL 1245 (1252)
Q Consensus      1234 l~~~~g~y~~l~ 1245 (1252)
                      .+.+...|.+.+
T Consensus       240 ~~~~~~~~~~~~  251 (257)
T PRK14246        240 FTSPKNELTEKY  251 (257)
T ss_pred             HhCCCcHHHHHH
Confidence            877655566554

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=2.1e-40  Score=358.95  Aligned_cols=201  Identities=26%  Similarity=0.507  Sum_probs=172.1

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      ++++|++++|++   .++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..    ..|++++
T Consensus         1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~   73 (210)
T cd03269           1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG   73 (210)
T ss_pred             CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence            478999999963   369999999999999999999999999999999999999999999999998753    4678999


Q ss_pred             EEccccccCcc-cHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~lf~g-TIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      |+||++.+|.+ |++||+.++..  ..+    ++++.++++..++.+...           ....+||||||||++||||
T Consensus        74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~a  142 (210)
T cd03269          74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAA  142 (210)
T ss_pred             EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHH
Confidence            99999998874 99999976421  111    334556666666654433           2335799999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEec
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G 1228 (1252)
                      ++.+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence            999999999999999999999999999999875 47899999999998865 8999999999998764

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=1.3e-40  Score=359.05  Aligned_cols=199  Identities=32%  Similarity=0.518  Sum_probs=168.2

Q ss_pred             EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhceE
Q 000856          366 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL  445 (1252)
Q Consensus       366 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~  445 (1252)
                      +++|++++|++.  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..   ..++++++|
T Consensus         1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~   75 (205)
T cd03226           1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY   75 (205)
T ss_pred             CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence            368999999641  358999999999999999999999999999999999999999999999988753   345678999


Q ss_pred             EccCC--CCchhcHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          446 VNQEP--ALFATTILENILYGKPEAT--MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       446 v~Q~~--~l~~~tv~~ni~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      ++|++  .++..|++||+.++.+...  .+++.+         .++.+  |+.........+||||||||++|||||+.+
T Consensus        76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~  144 (205)
T cd03226          76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAET---------VLKDL--DLYALKERHPLSLSGGQKQRLAIAAALLSG  144 (205)
T ss_pred             EecChhhhhhhccHHHHHhhhhhhcCccHHHHHH---------HHHHc--CCchhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence            99998  4567799999988643221  122333         33333  454455666779999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEE
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVV  580 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~  580 (1252)
                      |+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|+++
T Consensus       145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence            99999999999999999999999999874 58999999999999975 8999999999975

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=2e-40  Score=377.99  Aligned_cols=217  Identities=28%  Similarity=0.468  Sum_probs=181.7

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++++
T Consensus         4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i   79 (303)
T TIGR01288         4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI   79 (303)
T ss_pred             EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence            4899999999964   3589999999999999999999999999999999999999999999999988653 34567889


Q ss_pred             eEEccCCCCch-hcHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000856          444 GLVNQEPALFA-TTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       444 ~~v~Q~~~l~~-~tv~~ni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~  520 (1252)
                      +|++|++.++. .|++||+.+...  .....+....+     .+.++.+  |+.........+||||||||++|||||+.
T Consensus        80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~  152 (303)
T TIGR01288        80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN  152 (303)
T ss_pred             EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence            99999998886 499999975211  11222221111     1223333  55555566778999999999999999999


Q ss_pred             CCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       521 ~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+++..|+++++...
T Consensus       153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  225 (303)
T TIGR01288       153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE  225 (303)
T ss_pred             CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence            999999999999999999999999999885 48999999999999976 899999999999999999988653

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.1e-40  Score=367.11  Aligned_cols=220  Identities=31%  Similarity=0.505  Sum_probs=188.1

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC-----CCceEEECCcccCC--CCH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP-----TAGKVMIDGKDIRR--LNL 1081 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p-----~~G~I~idG~di~~--~~~ 1081 (1252)
                      .|+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|     ++|+|.+||+++..  .+.
T Consensus        20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~   96 (274)
T PRK14265         20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS   96 (274)
T ss_pred             eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence            6999999999963   3599999999999999999999999999999999999864     69999999999864  344


Q ss_pred             HHHhcccEEEccccccCcccHHHHhccCCCC-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHH
Q 000856         1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKEG-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 1156 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~-----~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQr 1156 (1252)
                      ..+|++++|+||++.+|..|+++|+.++...     ..++++.++++.+++.+.+..   -++    .....||||||||
T Consensus        97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~---~~~----~~~~~LSgGq~qr  169 (274)
T PRK14265         97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD---KLK----EKGTALSGGQQQR  169 (274)
T ss_pred             HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH---Hhc----CCcccCCHHHHHH
Confidence            5678999999999999989999999864211     123455667777777654432   122    3345799999999


Q ss_pred             HHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-ccCEEEEEe---------CCEEEE
Q 000856         1157 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR-GVDCIGVVQ---------DGRIVE 1226 (1252)
Q Consensus      1157 laLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~-~~DrI~vl~---------~G~Ive 1226 (1252)
                      ++|||||+++|++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+. .||++++|+         +|++++
T Consensus       170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~  249 (274)
T PRK14265        170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE  249 (274)
T ss_pred             HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence            9999999999999999999999999999999999999877899999999999885 589999997         899999


Q ss_pred             ecChhhhhcCCC
Q 000856         1227 QGSHSELVSRPD 1238 (1252)
Q Consensus      1227 ~G~~~eLl~~~~ 1238 (1252)
                      .|+++++...+.
T Consensus       250 ~g~~~~~~~~~~  261 (274)
T PRK14265        250 FSPTEQMFGSPQ  261 (274)
T ss_pred             eCCHHHHHhCCC
Confidence            999999986544

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.1e-40  Score=338.44  Aligned_cols=221  Identities=29%  Similarity=0.486  Sum_probs=185.7

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHH-Hhcc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS-LRLK 1087 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~-lR~~ 1087 (1252)
                      -++++|++..|..   ..+|++|||++++||+++++||||+|||||+++|+|+.+|.+|+|.++|.||...+++. .|..
T Consensus         3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G   79 (237)
T COG0410           3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG   79 (237)
T ss_pred             ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence            3789999999963   46999999999999999999999999999999999999999999999999999999886 6889


Q ss_pred             cEEEccccccCc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 000856         1088 IGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 1166 (1252)
Q Consensus      1088 i~~VpQd~~lf~-gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 1166 (1252)
                      |+||||...+|+ -||.|||.+|.....+++-++    ..+++..+-+| -|.......+..|||||+|.+||||||+.+
T Consensus        80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~  154 (237)
T COG0410          80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR  154 (237)
T ss_pred             eEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence            999999999995 699999997633222211111    00111122233 233444556678999999999999999999


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcCC
Q 000856         1167 PAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRP 1237 (1252)
Q Consensus      1167 p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~~ 1237 (1252)
                      |++|+|||||.+|-|.--+.|.+.|+++.+  +-||++|-++..... -+||.+||++|+|+..|+.+||.+++
T Consensus       155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~  228 (237)
T COG0410         155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP  228 (237)
T ss_pred             CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence            999999999999999999999999999874  569999999999764 57999999999999999999999863

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.2e-40  Score=381.47  Aligned_cols=213  Identities=30%  Similarity=0.462  Sum_probs=186.6

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCC----CHHHHh
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL----NLKSLR 1085 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~----~~~~lR 1085 (1252)
                      |++ |++++|.+   . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...    +....|
T Consensus         2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   75 (352)
T PRK11144          2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK   75 (352)
T ss_pred             eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence            567 99999953   2 23 99999999999999999999999999999999999999999999998653    244567


Q ss_pred             cccEEEccccccCc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 000856         1086 LKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 1164 (1252)
Q Consensus      1086 ~~i~~VpQd~~lf~-gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl 1164 (1252)
                      ++++||||++.+|. .|++||+.++.....++++.++++..++.++....|           ..||||||||++|||||+
T Consensus        76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL~  144 (352)
T PRK11144         76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRALL  144 (352)
T ss_pred             CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHHH
Confidence            89999999999986 699999998754445677888888888876655443           479999999999999999


Q ss_pred             cCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcCCCc
Q 000856         1165 KNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDG 1239 (1252)
Q Consensus      1165 ~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~~~g 1239 (1252)
                      ++|++|||||||++||+.+...+++.|++..+  ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++..
T Consensus       145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~  222 (352)
T PRK11144        145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM  222 (352)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcch
Confidence            99999999999999999999999999998753  7899999999998755 899999999999999999999987653

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.8e-40  Score=370.22  Aligned_cols=218  Identities=28%  Similarity=0.523  Sum_probs=184.0

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCC-HHHHhhhc
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ-LRWLRDQI  443 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~~~i  443 (1252)
                      ++++|++++|++  +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus         2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (274)
T PRK13644          2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV   79 (274)
T ss_pred             EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence            689999999963  234899999999999999999999999999999999999999999999999987664 35677789


Q ss_pred             eEEccCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000856          444 GLVNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       444 ~~v~Q~~~--l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~  519 (1252)
                      +|++|+|.  +++.|++||+.++...  .+..+...     .+.+.++.+  |+.......+.+||||||||++|||||+
T Consensus        80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~  152 (274)
T PRK13644         80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRK-----RVDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT  152 (274)
T ss_pred             EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence            99999985  4567999999876321  12222211     112233343  6666667778899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhc
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       520 ~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      .+|+++||||||++||+.++..+.+.++++. +|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus       153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  225 (274)
T PRK13644        153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD  225 (274)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence            9999999999999999999999999999875 48999999999999977999999999999999999887543

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=2e-40  Score=360.31  Aligned_cols=201  Identities=34%  Similarity=0.576  Sum_probs=171.9

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCC--CCHHHHhcc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRR--LNLKSLRLK 1087 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~--~~~~~lR~~ 1087 (1252)
                      |+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..  .+...+|++
T Consensus         1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   77 (213)
T cd03262           1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK   77 (213)
T ss_pred             CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence            478999999963   359999999999999999999999999999999999999999999999999853  455678899


Q ss_pred             cEEEccccccCc-ccHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHH
Q 000856         1088 IGLVQQEPALFA-ASIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAI 1159 (1252)
Q Consensus      1088 i~~VpQd~~lf~-gTIreNl~~~~~---~~~d----eei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaL 1159 (1252)
                      ++|+||++.+|. .|++||+.++..   ..+.    +++.++++..++.+.....           ...||||||||++|
T Consensus        78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l  146 (213)
T cd03262          78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAY-----------PAQLSGGQQQRVAI  146 (213)
T ss_pred             ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhC-----------ccccCHHHHHHHHH
Confidence            999999999886 699999976421   2222    3455566666665443332           35799999999999


Q ss_pred             HHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEE
Q 000856         1160 ARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRI 1224 (1252)
Q Consensus      1160 ARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~I 1224 (1252)
                      |||++++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++
T Consensus       147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            999999999999999999999999999999999875 47899999999999865 899999999975

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=5.8e-40  Score=360.86  Aligned_cols=209  Identities=33%  Similarity=0.524  Sum_probs=172.5

Q ss_pred             EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCH---HHHh
Q 000856         1010 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL---KSLR 1085 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~---~~lR 1085 (1252)
                      |+++||+++|++.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+.   ..+|
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR   81 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence            78999999996321 1269999999999999999999999999999999999999999999999999988764   5678


Q ss_pred             cccEEEcccc--ccC-cccHHHHhccCC----CCCCHHHH----HHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1086 LKIGLVQQEP--ALF-AASIFDNIAYGK----EGATEAEV----VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1086 ~~i~~VpQd~--~lf-~gTIreNl~~~~----~~~~deei----~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      ++++|+||++  .++ ..|+++|+.++.    ....+++.    .++++..++.+          ........+||||||
T Consensus        82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~  151 (228)
T cd03257          82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR  151 (228)
T ss_pred             ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence            8999999999  344 579999997531    11112211    23444444421          122333457999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEec
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G 1228 (1252)
                      ||++|||||+.+|++|||||||++||+.+...+.+.|++..+  ++|||++||+++.+. .||+|++|++|++++.|
T Consensus       152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence            999999999999999999999999999999999999998753  789999999999987 58999999999998765

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-40  Score=373.01  Aligned_cols=220  Identities=29%  Similarity=0.516  Sum_probs=183.5

Q ss_pred             EEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCC----CHHH
Q 000856          365 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL----QLRW  438 (1252)
Q Consensus       365 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~----~~~~  438 (1252)
                      |+++|++++|++..  ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...    +...
T Consensus         3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   82 (287)
T PRK13641          3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK   82 (287)
T ss_pred             EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence            78999999997321  14589999999999999999999999999999999999999999999999988643    2345


Q ss_pred             HhhhceEEccCC--CCchhcHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHhhCCCCcc-ccccCCCCCCChHHHHHHH
Q 000856          439 LRDQIGLVNQEP--ALFATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIA  513 (1252)
Q Consensus       439 ~~~~i~~v~Q~~--~l~~~tv~~ni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~LSgGqkqRv~  513 (1252)
                      .++.++|++|+|  .++..|++||+.++..  ....++...     .+.+.++.+  |+. ......+.+||||||||++
T Consensus        83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl~  155 (287)
T PRK13641         83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKV--GLSEDLISKSPFELSGGQMRRVA  155 (287)
T ss_pred             HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhhCCcccCCHHHHHHHH
Confidence            677899999998  4777799999987532  112222111     122344444  665 3557778899999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          514 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       514 lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |||||+.+|++|||||||++||+.+++.+.+.|+++. +|.|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus       156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  235 (287)
T PRK13641        156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD  235 (287)
T ss_pred             HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            9999999999999999999999999999999999885 48999999999999865 899999999999999999887543

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=2.6e-40  Score=361.54  Aligned_cols=209  Identities=30%  Similarity=0.514  Sum_probs=174.9

Q ss_pred             EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHH---Hh
Q 000856          365 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW---LR  440 (1252)
Q Consensus       365 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~  440 (1252)
                      ++++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...   ++
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (221)
T TIGR02211         2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR   81 (221)
T ss_pred             EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence            68999999996422 245899999999999999999999999999999999999999999999999987766543   33


Q ss_pred             -hhceEEccCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000856          441 -DQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR  516 (1252)
Q Consensus       441 -~~i~~v~Q~~~l~~~-tv~~ni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lAR  516 (1252)
                       +.++|++|++.+++. |++||+.++..  .....+...     .+.+.++.+  |++......+.+||||||||++|||
T Consensus        82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar  154 (221)
T TIGR02211        82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR  154 (221)
T ss_pred             HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence             679999999988864 99999987421  111111111     122344444  6666677778899999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhccCEEEEEeCCEEE
Q 000856          517 AMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVV  580 (1252)
Q Consensus       517 al~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~  580 (1252)
                      ||+.+|++|||||||++||+.+++.+.+.|+++.  .++|+|++||+++.+..+|+|++|++|+++
T Consensus       155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~  220 (221)
T TIGR02211       155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF  220 (221)
T ss_pred             HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence            9999999999999999999999999999999885  379999999999999889999999999985

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=1.6e-40  Score=360.29  Aligned_cols=207  Identities=26%  Similarity=0.446  Sum_probs=172.7

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      |+++|++++|++   .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..++++++
T Consensus         1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~   75 (211)
T cd03264           1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG   75 (211)
T ss_pred             CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence            478999999964   35899999999999 99999999999999999999999999999999999987766 66778899


Q ss_pred             EEccCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          445 LVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       445 ~v~Q~~~l~~~-tv~~ni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      |++|++.+|.. |++||+.+...  ....++...     .+.+.++.+  |+.......+.+||||||||++|||||+.+
T Consensus        76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~  148 (211)
T cd03264          76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKA-----RVDEVLELV--NLGDRAKKKIGSLSGGMRRRVGIAQALVGD  148 (211)
T ss_pred             EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHH-----HHHHHHHHC--CCHHHHhCchhhCCHHHHHHHHHHHHHhcC
Confidence            99999999876 99999986421  111111111     111223332  444334556678999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEec
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG  583 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g  583 (1252)
                      |+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g  211 (211)
T cd03264         149 PSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG  211 (211)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence            9999999999999999999999999998767999999999999975 8999999999998764

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=8.4e-40  Score=365.51  Aligned_cols=223  Identities=27%  Similarity=0.444  Sum_probs=182.9

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc-----cCCCCHHH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD-----IRRLNLKS 1083 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~d-----i~~~~~~~ 1083 (1252)
                      -++++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+     +.+.+...
T Consensus         6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~   82 (258)
T PRK11701          6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE   82 (258)
T ss_pred             eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence            4899999999963   359999999999999999999999999999999999999999999999999     87776554


Q ss_pred             ----HhcccEEEccccc--cC-cccHHHHhccCC---CCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 000856         1084 ----LRLKIGLVQQEPA--LF-AASIFDNIAYGK---EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 1149 (1252)
Q Consensus      1084 ----lR~~i~~VpQd~~--lf-~gTIreNl~~~~---~~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~L 1149 (1252)
                          .|+.++|+||++.  ++ ..|+++|+.+..   ....    ++++.++++..++.+          +.....+..|
T Consensus        83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~L  152 (258)
T PRK11701         83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTF  152 (258)
T ss_pred             HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccC
Confidence                3567999999984  33 357888875321   1111    223334444444321          2234455689


Q ss_pred             ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEE
Q 000856         1150 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVE 1226 (1252)
Q Consensus      1150 SgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive 1226 (1252)
                      |||||||++|||||+++|+||||||||++||+.+...+.+.|++..+  +.|+|+|||+++.+. .||+|++|++|++++
T Consensus       153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~  232 (258)
T PRK11701        153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE  232 (258)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999988753  789999999999997 589999999999999


Q ss_pred             ecChhhhhcCCCchhHHH
Q 000856         1227 QGSHSELVSRPDGAYSRL 1244 (1252)
Q Consensus      1227 ~G~~~eLl~~~~g~y~~l 1244 (1252)
                      .|+++++..++...|.+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~  250 (258)
T PRK11701        233 SGLTDQVLDDPQHPYTQL  250 (258)
T ss_pred             eCCHHHHhcCCCCHHHHH
Confidence            999999987655556544

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=5.8e-40  Score=353.68  Aligned_cols=200  Identities=35%  Similarity=0.569  Sum_probs=179.1

Q ss_pred             EEEEeEEEECCCCCC--CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhh
Q 000856          365 IEFKNVTFSYPSRPD--VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ  442 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~  442 (1252)
                      ++++|++++|++..+  .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|             +
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~   67 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S   67 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence            478999999975321  3599999999999999999999999999999999999999999999998             5


Q ss_pred             ceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000856          443 IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP  522 (1252)
Q Consensus       443 i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~  522 (1252)
                      |+|++|+|.+++.|++||+.++.. ...++...+++.+++.+++..+|.|+++.+++.+.+||||||||++||||++.+|
T Consensus        68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p  146 (204)
T cd03250          68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA  146 (204)
T ss_pred             EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999999998643 3345566677777888899999999999999999999999999999999999999


Q ss_pred             CEEEEeCCCCCCChHhHHHHHH-HHHHhc-CCCeEEEEccCccchhccCEEEEEeCCE
Q 000856          523 KILLLDEATSALDAGSESIVQE-ALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQ  578 (1252)
Q Consensus       523 ~illlDEpts~LD~~~~~~~~~-~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~  578 (1252)
                      +++||||||++||+++.+.+.+ .+++.. +++|+|++||+++.+..||++++|++|+
T Consensus       147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~  204 (204)
T cd03250         147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR  204 (204)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence            9999999999999999988887 455553 4799999999999998899999999985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=2.8e-40  Score=365.61  Aligned_cols=217  Identities=33%  Similarity=0.550  Sum_probs=184.3

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCC--CHHHHhhh
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL--QLRWLRDQ  442 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~--~~~~~~~~  442 (1252)
                      ++++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...  +...++++
T Consensus         2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   78 (240)
T PRK09493          2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE   78 (240)
T ss_pred             EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence            689999999963   3589999999999999999999999999999999999999999999999998754  33566778


Q ss_pred             ceEEccCCCCch-hcHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000856          443 IGLVNQEPALFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM  518 (1252)
Q Consensus       443 i~~v~Q~~~l~~-~tv~~ni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal  518 (1252)
                      ++|++|++.++. .|++||+.++..   .....+...     .+.+.++.+  |++......+.+||||||||++||||+
T Consensus        79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al  151 (240)
T PRK09493         79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL  151 (240)
T ss_pred             eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence            999999998886 499999987531   111111111     123444444  676667778889999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          519 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       519 ~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus       152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  226 (240)
T PRK09493        152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN  226 (240)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence            99999999999999999999999999999875 48999999999999966 899999999999999999887543

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.2e-40  Score=372.26  Aligned_cols=220  Identities=31%  Similarity=0.522  Sum_probs=188.2

Q ss_pred             ccEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-----CCCceEEECCcccCC--CC
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-----PTAGKVMIDGKDIRR--LN 1080 (1252)
Q Consensus      1008 g~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~-----p~~G~I~idG~di~~--~~ 1080 (1252)
                      ..|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++     |++|+|.+||.++..  .+
T Consensus        44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~  120 (305)
T PRK14264         44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN  120 (305)
T ss_pred             ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            36999999999963   359999999999999999999999999999999999986     689999999999865  34


Q ss_pred             HHHHhcccEEEccccccCcccHHHHhccCCCC-------------------CCHHHHHHHHHHcCchhhHhhCCCcCCCc
Q 000856         1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEG-------------------ATEAEVVEAARAANVHGFVSALPNAYKTP 1141 (1252)
Q Consensus      1081 ~~~lR~~i~~VpQd~~lf~gTIreNl~~~~~~-------------------~~deei~~al~~~~l~~~i~~lp~gldt~ 1141 (1252)
                      ...+|++++|+||++.+|++|++||+.++...                   ..++++.++++.+++.+.+       ++.
T Consensus       121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~  193 (305)
T PRK14264        121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV-------NDR  193 (305)
T ss_pred             HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh-------hHH
Confidence            56788999999999999999999999864210                   1134466667777664333       233


Q ss_pred             cCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhc-cCEE-EEE
Q 000856         1142 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCI-GVV 1219 (1252)
Q Consensus      1142 vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~-~DrI-~vl 1219 (1252)
                      ......+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+| ++|
T Consensus       194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l  273 (305)
T PRK14264        194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL  273 (305)
T ss_pred             hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence            44556789999999999999999999999999999999999999999999998777899999999999865 8997 577


Q ss_pred             eCCEEEEecChhhhhcCC
Q 000856         1220 QDGRIVEQGSHSELVSRP 1237 (1252)
Q Consensus      1220 ~~G~Ive~G~~~eLl~~~ 1237 (1252)
                      ++|++++.|+++++++.+
T Consensus       274 ~~G~i~~~g~~~~~~~~~  291 (305)
T PRK14264        274 TGGELVEYDDTDKIFENP  291 (305)
T ss_pred             cCCEEEEeCCHHHHHhCc
Confidence            999999999999998653

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-40  Score=369.18  Aligned_cols=219  Identities=32%  Similarity=0.485  Sum_probs=182.3

Q ss_pred             cccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccccC--C
Q 000856          362 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--L  434 (1252)
Q Consensus       362 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~  434 (1252)
                      .+.|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..  .
T Consensus        17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~   93 (267)
T PRK14235         17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL   93 (267)
T ss_pred             CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence            346999999999963   3589999999999999999999999999999999999975     89999999999864  3


Q ss_pred             CHHHHhhhceEEccCCCCchhcHHHHHhcCCCC--C--CHH----HHHHHHHHhcHHHHHhhCCCCccccccCCCCCCCh
Q 000856          435 QLRWLRDQIGLVNQEPALFATTILENILYGKPE--A--TMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSG  506 (1252)
Q Consensus       435 ~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~--~--~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSg  506 (1252)
                      +...+++.++|++|++.+|+.|++||+.++...  .  ...    ++..+++..++.+.       +....++.+.+|||
T Consensus        94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSg  166 (267)
T PRK14235         94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEE-------VKDRLHEPGTGLSG  166 (267)
T ss_pred             chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchh-------hhHHhhCCcccCCH
Confidence            455677889999999999988999999875310  0  111    12222222222111       12245667889999


Q ss_pred             HHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecCh
Q 000856          507 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTH  585 (1252)
Q Consensus       507 GqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~  585 (1252)
                      |||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus       167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~  246 (267)
T PRK14235        167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT  246 (267)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999999998768899999999999966 899999999999999999


Q ss_pred             HHHHh
Q 000856          586 EELIA  590 (1252)
Q Consensus       586 ~~l~~  590 (1252)
                      +++..
T Consensus       247 ~~~~~  251 (267)
T PRK14235        247 EKMFT  251 (267)
T ss_pred             HHHHh
Confidence            88764

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=3.5e-40  Score=356.67  Aligned_cols=203  Identities=26%  Similarity=0.429  Sum_probs=172.7

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      |+++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...  ..++++++
T Consensus         1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~   75 (208)
T cd03268           1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG   75 (208)
T ss_pred             CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence            478999999963   3599999999999999999999999999999999999999999999999988654  45667899


Q ss_pred             EEccCCCCch-hcHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          445 LVNQEPALFA-TTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       445 ~v~Q~~~l~~-~tv~~ni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      |++|++.++. .|++||+.++..  ....+++...++..           |++....+.+.+||||||||++||||++.+
T Consensus        76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~la~al~~~  144 (208)
T cd03268          76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVV-----------GLKDSAKKKVKGFSLGMKQRLGIALALLGN  144 (208)
T ss_pred             EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHc-----------CCHHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence            9999998885 599999987531  11223333333333           444445566779999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEec
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG  583 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g  583 (1252)
                      |+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g  208 (208)
T cd03268         145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG  208 (208)
T ss_pred             CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence            99999999999999999999999999875 48999999999999976 8999999999998764

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5e-40  Score=369.29  Aligned_cols=220  Identities=28%  Similarity=0.518  Sum_probs=185.7

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .++++|++++|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus         7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i   85 (271)
T PRK13632          7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI   85 (271)
T ss_pred             EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence            58999999999632 34589999999999999999999999999999999999999999999999999877777788899


Q ss_pred             eEEccCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000856          444 GLVNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       444 ~~v~Q~~~--l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~  519 (1252)
                      +|++|+|.  ++..|++||+.++...  .+.++...     .+.+.++.+  |++....+.+.+||||||||++|||||+
T Consensus        86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~  158 (271)
T PRK13632         86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA  158 (271)
T ss_pred             EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence            99999984  4466999999875321  12222211     122334443  5555667778899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhc
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       520 ~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      .+|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus       159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  232 (271)
T PRK13632        159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN  232 (271)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence            99999999999999999999999999998753  5899999999999887999999999999999998887553

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.5e-40  Score=367.64  Aligned_cols=219  Identities=33%  Similarity=0.478  Sum_probs=182.9

Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccccC--CC
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQ  435 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~  435 (1252)
                      ..|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..  .+
T Consensus        12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~   88 (269)
T PRK14259         12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD   88 (269)
T ss_pred             ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence            35999999999964   358999999999999999999999999999999999987     699999999998853  45


Q ss_pred             HHHHhhhceEEccCCCCchhcHHHHHhcCCCCC--CH---HHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHH
Q 000856          436 LRWLRDQIGLVNQEPALFATTILENILYGKPEA--TM---AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ  510 (1252)
Q Consensus       436 ~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkq  510 (1252)
                      ...+++.++|++|++.+|..|++||+.++....  ..   +++.++++..++       ..++.+.....+.+|||||||
T Consensus        89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~~q  161 (269)
T PRK14259         89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAV-------WDECKDKLNESGYSLSGGQQQ  161 (269)
T ss_pred             HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCC-------cchhhhhhCCCcccCCHHHHH
Confidence            566788899999999999889999998764211  11   112222222221       113334566778899999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeC-----------CE
Q 000856          511 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQ-----------GQ  578 (1252)
Q Consensus       511 Rv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~-----------G~  578 (1252)
                      |++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++           |+
T Consensus       162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~  241 (269)
T PRK14259        162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY  241 (269)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence            999999999999999999999999999999999999998778999999999999865 899999996           67


Q ss_pred             EEEecChHHHHhc
Q 000856          579 VVETGTHEELIAK  591 (1252)
Q Consensus       579 i~~~g~~~~l~~~  591 (1252)
                      +++.|+++++...
T Consensus       242 ~~~~~~~~~~~~~  254 (269)
T PRK14259        242 LVEFNETKKIFNS  254 (269)
T ss_pred             EEEeCCHHHHHhC
Confidence            8999999988654

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=7.6e-40  Score=365.85  Aligned_cols=212  Identities=26%  Similarity=0.419  Sum_probs=184.1

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC--------CceEEECCcccCCCCH
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT--------AGKVMIDGKDIRRLNL 1081 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~--------~G~I~idG~di~~~~~ 1081 (1252)
                      |+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|+        +|+|.+||.++...+.
T Consensus         2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~   78 (272)
T PRK13547          2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA   78 (272)
T ss_pred             eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence            789999999953   36999999999999999999999999999999999999998        9999999999988888


Q ss_pred             HHHhcccEEEccccc-cCcccHHHHhccCCC-C------C---CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 000856         1082 KSLRLKIGLVQQEPA-LFAASIFDNIAYGKE-G------A---TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 1150 (1252)
Q Consensus      1082 ~~lR~~i~~VpQd~~-lf~gTIreNl~~~~~-~------~---~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LS 1150 (1252)
                      ..+|+.++|+||++. +|..|++||+.++.. .      .   .++.++++++..++.+.           .......||
T Consensus        79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS  147 (272)
T PRK13547         79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATAL-----------VGRDVTTLS  147 (272)
T ss_pred             HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCC
Confidence            888889999999986 678999999976421 1      1   12345666667766543           233345799


Q ss_pred             hhHHHHHHHHHHHc---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEE
Q 000856         1151 GGQKQRIAIARAVL---------KNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGV 1218 (1252)
Q Consensus      1151 gGQrQrlaLARALl---------~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~v 1218 (1252)
                      ||||||++|||||+         .+|++|||||||++||+.+...+.+.|++..+  ++|||+|||+++.+. .||++++
T Consensus       148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~  227 (272)
T PRK13547        148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM  227 (272)
T ss_pred             HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence            99999999999999         59999999999999999999999999998753  789999999999985 5899999


Q ss_pred             EeCCEEEEecChhhhhc
Q 000856         1219 VQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1219 l~~G~Ive~G~~~eLl~ 1235 (1252)
                      |++|+|++.|+++++++
T Consensus       228 l~~G~i~~~g~~~~~~~  244 (272)
T PRK13547        228 LADGAIVAHGAPADVLT  244 (272)
T ss_pred             EECCeEEEecCHHHHcC
Confidence            99999999999999875

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=3e-40  Score=377.97  Aligned_cols=227  Identities=29%  Similarity=0.419  Sum_probs=186.8

Q ss_pred             cEEEEeEEEECCCCC----------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccC
Q 000856          364 NIEFKNVTFSYPSRP----------DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT  433 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~----------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~  433 (1252)
                      -|+++|++++|+...          ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+
T Consensus         8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~   87 (331)
T PRK15079          8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG   87 (331)
T ss_pred             eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence            589999999996321          2468999999999999999999999999999999999999999999999999988


Q ss_pred             CCHH---HHhhhceEEccCC--CCch-hcHHHHHhcCC----CCCCHHHHHHHHHHhcHHHHHhhCCCCcc-ccccCCCC
Q 000856          434 LQLR---WLRDQIGLVNQEP--ALFA-TTILENILYGK----PEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGV  502 (1252)
Q Consensus       434 ~~~~---~~~~~i~~v~Q~~--~l~~-~tv~~ni~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~  502 (1252)
                      .+..   .+|++|+||+|+|  .+++ .||.||+.++.    +..+.++.....     .+.++.+  |+. ...+..+.
T Consensus        88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~-----~~~l~~v--gl~~~~~~~~p~  160 (331)
T PRK15079         88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRV-----KAMMLKV--GLLPNLINRYPH  160 (331)
T ss_pred             CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHc--CCChHHhcCCcc
Confidence            7654   3567899999998  4664 59999997532    112222222211     2233333  442 34567788


Q ss_pred             CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEE
Q 000856          503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQV  579 (1252)
Q Consensus       503 ~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i  579 (1252)
                      +|||||||||+|||||+.+|++||+||||++||+.++..+.+.|+++.+  |.|+|+|||+++.+.. ||+|++|++|+|
T Consensus       161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i  240 (331)
T PRK15079        161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA  240 (331)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence            9999999999999999999999999999999999999999999998853  8999999999999976 899999999999


Q ss_pred             EEecChHHHHhcc-cchHH
Q 000856          580 VETGTHEELIAKA-GAYAS  597 (1252)
Q Consensus       580 ~~~g~~~~l~~~~-~~~~~  597 (1252)
                      ++.|+.+++.++. ..|..
T Consensus       241 ve~g~~~~i~~~~~~py~~  259 (331)
T PRK15079        241 VELGTYDEVYHNPLHPYTK  259 (331)
T ss_pred             EEEcCHHHHHcCCCCHHHH
Confidence            9999999987653 34544

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2.7e-40  Score=371.76  Aligned_cols=214  Identities=31%  Similarity=0.503  Sum_probs=183.0

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .++++|++++|+.  +..+|+|+||+|++||++|++||||||||||+|+|+|++.|++|+|.++|.+...- ...+++++
T Consensus         4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i   80 (293)
T COG1131           4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI   80 (293)
T ss_pred             eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence            4788999999973  24599999999999999999999999999999999999999999999999988665 66778899


Q ss_pred             eEEccCCCCchh-cHHHHHhcCC-----CC-CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000856          444 GLVNQEPALFAT-TILENILYGK-----PE-ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR  516 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-tv~~ni~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lAR  516 (1252)
                      ||+||+|.+++. |++||+.|..     +. ...+++.+.++..           |+....+....+||+|||||++||+
T Consensus        81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~lS~G~kqrl~ia~  149 (293)
T COG1131          81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELF-----------GLEDKANKKVRTLSGGMKQRLSIAL  149 (293)
T ss_pred             EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHc-----------CCchhhCcchhhcCHHHHHHHHHHH
Confidence            999999998876 9999998732     11 1122333333333           4443335667899999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC-C-CeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          517 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-G-RTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       517 al~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~-~-~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      ||+.+|+++||||||++|||.++..+.+.|+++.+ | +||+++||.++++.. ||+|++|++|+++..|+.+++...
T Consensus       150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~  227 (293)
T COG1131         150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK  227 (293)
T ss_pred             HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence            99999999999999999999999999999999864 5 799999999999987 899999999999999999887543

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-40  Score=383.00  Aligned_cols=221  Identities=35%  Similarity=0.518  Sum_probs=183.5

Q ss_pred             cEEEEeEEEECCCCC---------------------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCc
Q 000856          364 NIEFKNVTFSYPSRP---------------------DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG  422 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~---------------------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G  422 (1252)
                      .|+++|+++.|+..+                     ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|
T Consensus         4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG   83 (400)
T PRK10070          4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG   83 (400)
T ss_pred             EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence            367777777775432                     12379999999999999999999999999999999999999999


Q ss_pred             EEEECCccccCCCHHHH----hhhceEEccCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccc
Q 000856          423 HVLLDNVDIKTLQLRWL----RDQIGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYST  495 (1252)
Q Consensus       423 ~i~~~g~~~~~~~~~~~----~~~i~~v~Q~~~l~~~-tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~  495 (1252)
                      +|.++|.++...+...+    +++++||+|++.+|+. |++||+.++...  ...++...     .+.+.++.+  |++.
T Consensus        84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~--gL~~  156 (400)
T PRK10070         84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERRE-----KALDALRQV--GLEN  156 (400)
T ss_pred             EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCCh
Confidence            99999999987765443    3579999999999875 999999986321  11111111     122344444  6666


Q ss_pred             cccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEE
Q 000856          496 QVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVA  572 (1252)
Q Consensus       496 ~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~  572 (1252)
                      .......+||||||||++|||||+.+|++|||||||++||+.+++.+++.|.++.  .++|+|++||+++++.. ||+|+
T Consensus       157 ~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~  236 (400)
T PRK10070        157 YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIA  236 (400)
T ss_pred             hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEE
Confidence            6677788999999999999999999999999999999999999999999999874  48999999999999865 89999


Q ss_pred             EEeCCEEEEecChHHHHhc
Q 000856          573 VIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       573 ~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +|++|++++.|+++++...
T Consensus       237 vL~~G~i~~~g~~~~l~~~  255 (400)
T PRK10070        237 IMQNGEVVQVGTPDEILNN  255 (400)
T ss_pred             EEECCEEEecCCHHHHHhC
Confidence            9999999999999998765

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=3.8e-40  Score=369.29  Aligned_cols=224  Identities=29%  Similarity=0.437  Sum_probs=184.1

Q ss_pred             EEEEeEEEECCCC------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHH-
Q 000856          365 IEFKNVTFSYPSR------PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR-  437 (1252)
Q Consensus       365 i~~~~v~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~-  437 (1252)
                      |+++|++|+|++.      .+..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. 
T Consensus         3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~   82 (265)
T TIGR02769         3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ   82 (265)
T ss_pred             EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence            7899999999632      135699999999999999999999999999999999999999999999999998776543 


Q ss_pred             --HHhhhceEEccCCC--Cch-hcHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHhhCCCCcc-ccccCCCCCCChHH
Q 000856          438 --WLRDQIGLVNQEPA--LFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQ  508 (1252)
Q Consensus       438 --~~~~~i~~v~Q~~~--l~~-~tv~~ni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~LSgGq  508 (1252)
                        .+++.++|++|++.  ++. .|++||+.++..   .....+.     ...+.+.++.+  |++ ...+..+.+|||||
T Consensus        83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe  155 (265)
T TIGR02769        83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQ-----KARIAELLDMV--GLRSEDADKLPRQLSGGQ  155 (265)
T ss_pred             HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence              35678999999983  443 599999965321   0111111     11123344444  664 45577888999999


Q ss_pred             HHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecCh
Q 000856          509 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTH  585 (1252)
Q Consensus       509 kqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~  585 (1252)
                      |||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+  |+|+|++||+++.+.. ||++++|++|++++.|++
T Consensus       156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~  235 (265)
T TIGR02769       156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV  235 (265)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence            9999999999999999999999999999999999999998753  8999999999999975 899999999999999999


Q ss_pred             HHHHhcccch
Q 000856          586 EELIAKAGAY  595 (1252)
Q Consensus       586 ~~l~~~~~~~  595 (1252)
                      +++......|
T Consensus       236 ~~~~~~~~~~  245 (265)
T TIGR02769       236 AQLLSFKHPA  245 (265)
T ss_pred             HHHcCCCCHH
Confidence            9987644333

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.7e-40  Score=369.73  Aligned_cols=219  Identities=29%  Similarity=0.488  Sum_probs=184.1

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .++++|++++|++.  ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus         3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i   80 (277)
T PRK13652          3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV   80 (277)
T ss_pred             eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence            37899999999632  3489999999999999999999999999999999999999999999999998776667778889


Q ss_pred             eEEccCCC--CchhcHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000856          444 GLVNQEPA--LFATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       444 ~~v~Q~~~--l~~~tv~~ni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~  519 (1252)
                      +||+|++.  +++.|++||+.++..  ..+.++..+     ...+.++.+  |+.......+..||||||||++|||||+
T Consensus        81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrl~laraL~  153 (277)
T PRK13652         81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSALHML--GLEELRDRVPHHLSGGEKKRVAIAGVIA  153 (277)
T ss_pred             EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence            99999983  667799999987532  122221111     112233333  4544556677899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchh-ccCEEEEEeCCEEEEecChHHHHhc
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIR-NVDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       520 ~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      .+|+++||||||++||+.+++.+.+.++++.+  |+|+|++||+++.+. .||||++|++|++++.|+++++.+.
T Consensus       154 ~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~  228 (277)
T PRK13652        154 MEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ  228 (277)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence            99999999999999999999999999998753  899999999999985 4899999999999999999998654

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.2e-40  Score=365.84  Aligned_cols=218  Identities=29%  Similarity=0.436  Sum_probs=182.2

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccccCCCHHH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTLQLRW  438 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~~~~~  438 (1252)
                      .++++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...+...
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   79 (250)
T PRK14247          3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE   79 (250)
T ss_pred             eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence            4899999999964   3489999999999999999999999999999999999974     7999999999998777777


Q ss_pred             HhhhceEEccCCCCc-hhcHHHHHhcCCCCC----CHHHHHHHHHHhcHHHHHhhCCCCc----cccccCCCCCCChHHH
Q 000856          439 LRDQIGLVNQEPALF-ATTILENILYGKPEA----TMAEVEAAASAANAHSFITLLPNGY----STQVGERGVQLSGGQK  509 (1252)
Q Consensus       439 ~~~~i~~v~Q~~~l~-~~tv~~ni~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~g~~LSgGqk  509 (1252)
                      +++.|+|++|++.++ ..|++||+.++....    ...+..+     .+.+.++.+  |+    .......+.+||||||
T Consensus        80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~  152 (250)
T PRK14247         80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE-----RVRWALEKA--QLWDEVKDRLDAPAGKLSGGQQ  152 (250)
T ss_pred             HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHH-----HHHHHHHHc--CCCcchhhhhcCCcccCCHHHH
Confidence            888999999999766 469999998753210    1111111     112223322  32    2345667789999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       510 qRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      ||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (250)
T PRK14247        153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV  232 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence            9999999999999999999999999999999999999998778999999999999865 899999999999999999988


Q ss_pred             Hhc
Q 000856          589 IAK  591 (1252)
Q Consensus       589 ~~~  591 (1252)
                      .+.
T Consensus       233 ~~~  235 (250)
T PRK14247        233 FTN  235 (250)
T ss_pred             HcC
Confidence            643

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.8e-40  Score=373.00  Aligned_cols=222  Identities=28%  Similarity=0.496  Sum_probs=182.3

Q ss_pred             ccEEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccC----C-C
Q 000856          363 GNIEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT----L-Q  435 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~----~-~  435 (1252)
                      +.|+++|++++|+++.  ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..    . +
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~   84 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE   84 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence            4699999999997532  1358999999999999999999999999999999999999999999999998752    1 3


Q ss_pred             HHHHhhhceEEccCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCcc-ccccCCCCCCChHHHH
Q 000856          436 LRWLRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQ  510 (1252)
Q Consensus       436 ~~~~~~~i~~v~Q~~--~l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~LSgGqkq  510 (1252)
                      ...+++.|+|++|++  .++..|++||+.++...  ...++....     +.+.++.+  |+. ...++.+.+|||||||
T Consensus        85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~~LS~Gq~q  157 (289)
T PRK13645         85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLV--QLPEDYVKRSPFELSGGQKR  157 (289)
T ss_pred             HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCChhhCCHHHHH
Confidence            456778899999998  46677999999875321  122221111     11223332  442 3456778899999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHH
Q 000856          511 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEE  587 (1252)
Q Consensus       511 Rv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~  587 (1252)
                      |++|||||+.+|++|||||||++||+.+++.+.+.|+++.  .|+|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus       158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~  237 (289)
T PRK13645        158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE  237 (289)
T ss_pred             HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence            9999999999999999999999999999999999999875  38999999999999865 89999999999999999988


Q ss_pred             HHhc
Q 000856          588 LIAK  591 (1252)
Q Consensus       588 l~~~  591 (1252)
                      +.+.
T Consensus       238 ~~~~  241 (289)
T PRK13645        238 IFSN  241 (289)
T ss_pred             HhcC
Confidence            7553

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=3e-40  Score=370.64  Aligned_cols=218  Identities=26%  Similarity=0.447  Sum_probs=183.4

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHH---HHh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLR  440 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~  440 (1252)
                      .|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..   .++
T Consensus         7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~   83 (269)
T PRK11831          7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR   83 (269)
T ss_pred             eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence            5899999999963   3589999999999999999999999999999999999999999999999998765543   356


Q ss_pred             hhceEEccCCCCchh-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000856          441 DQIGLVNQEPALFAT-TILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR  516 (1252)
Q Consensus       441 ~~i~~v~Q~~~l~~~-tv~~ni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lAR  516 (1252)
                      ++++|++|++.+++. |++||+.++...   ....+..     ..+.+.++.+  |+.........+||||||||++|||
T Consensus        84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar  156 (269)
T PRK11831         84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH-----STVMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR  156 (269)
T ss_pred             hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence            789999999999876 999999864211   1111111     1112233333  5555566777899999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-C-CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          517 AMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       517 al~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      ||+.+|+++||||||++||+.+++.+.+.|+++. + |+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus       157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  234 (269)
T PRK11831        157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN  234 (269)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence            9999999999999999999999999999999875 3 7999999999999876 899999999999999999998764

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.1e-40  Score=367.45  Aligned_cols=220  Identities=30%  Similarity=0.484  Sum_probs=185.1

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .++++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus         7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   85 (269)
T PRK13648          7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI   85 (269)
T ss_pred             eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence            58999999999743 23589999999999999999999999999999999999999999999999999877777788899


Q ss_pred             eEEccCCC-Cc-hhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000856          444 GLVNQEPA-LF-ATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       444 ~~v~Q~~~-l~-~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~  519 (1252)
                      +|++|+|. ++ ..|+++|+.++...  ...++....     +.+.++.+  |+.......+.+||||||||++||||++
T Consensus        86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~  158 (269)
T PRK13648         86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRR-----VSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLA  158 (269)
T ss_pred             eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence            99999985 44 55999999886321  112221111     12223333  4444556677899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhc
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       520 ~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      .+|+++||||||++||+.+++.+.+.|+++.+  |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus       159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  232 (269)
T PRK13648        159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH  232 (269)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence            99999999999999999999999999998753  7999999999999888999999999999999999887654

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.4e-40  Score=362.66  Aligned_cols=218  Identities=25%  Similarity=0.413  Sum_probs=181.0

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHH-HHhhh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR-WLRDQ  442 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~  442 (1252)
                      .++++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~   81 (237)
T PRK11614          5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA   81 (237)
T ss_pred             EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence            4899999999963   3589999999999999999999999999999999999999999999999998877654 35678


Q ss_pred             ceEEccCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      ++|++|++.+|+. |++||+.++.......+....+     .+.++.++ ++.......+.+||||||||++||||++.+
T Consensus        82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~  155 (237)
T PRK11614         82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ  155 (237)
T ss_pred             EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence            9999999998875 9999998764222222221111     11222221 122233456779999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      |+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus       156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  226 (237)
T PRK11614        156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA  226 (237)
T ss_pred             CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence            99999999999999999999999999875 48999999999998765 89999999999999999998864

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.1e-40  Score=367.61  Aligned_cols=217  Identities=29%  Similarity=0.443  Sum_probs=182.4

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .++++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus        11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i   87 (265)
T PRK10575         11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV   87 (265)
T ss_pred             eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence            5899999999964   3589999999999999999999999999999999999999999999999998877777788899


Q ss_pred             eEEccCCCCchh-cHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000856          444 GLVNQEPALFAT-TILENILYGKPEA------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR  516 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-tv~~ni~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lAR  516 (1252)
                      +|++|++.++.. |+.||+.++....      ......     ..+.+.++.+  |+.........+||||||||++|||
T Consensus        88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~lar  160 (265)
T PRK10575         88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADR-----EKVEEAISLV--GLKPLAHRLVDSLSGGERQRAWIAM  160 (265)
T ss_pred             EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHH-----HHHHHHHHHc--CCHHHhcCCcccCCHHHHHHHHHHH
Confidence            999999877665 9999998753210      000100     0112223333  4444455666799999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-C-CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          517 AMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       517 al~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      ||+.+|+++||||||++||+.+++.+.+.|.++. . |+|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus       161 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~  237 (265)
T PRK10575        161 LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR  237 (265)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence            9999999999999999999999999999999884 3 7999999999999865 89999999999999999888754

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.3e-40  Score=369.49  Aligned_cols=221  Identities=29%  Similarity=0.515  Sum_probs=185.9

Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCC---cEEEECCccccCCCHHHH
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA---GHVLLDNVDIKTLQLRWL  439 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~  439 (1252)
                      ..|+++|++|+|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++   |+|.++|.++...+...+
T Consensus         4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~   82 (282)
T PRK13640          4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI   82 (282)
T ss_pred             ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence            358999999999642 2358999999999999999999999999999999999999998   899999999987766677


Q ss_pred             hhhceEEccCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 000856          440 RDQIGLVNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA  515 (1252)
Q Consensus       440 ~~~i~~v~Q~~~--l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lA  515 (1252)
                      +++++|++|+|.  +++.|++||+.++...  .+.++..+     .+.+.++.+  |+....+....+||||||||++||
T Consensus        83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~G~~qrv~la  155 (282)
T PRK13640         83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK-----IVRDVLADV--GMLDYIDSEPANLSGGQKQRVAIA  155 (282)
T ss_pred             HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHH
Confidence            889999999984  5567999999876322  12222111     112233333  555556677789999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhc
Q 000856          516 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       516 Ral~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |||+.+|+++||||||++||+.+++.+.+.|+++.+  |+|||++||+++.+..||++++|++|++++.|+++++...
T Consensus       156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  233 (282)
T PRK13640        156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK  233 (282)
T ss_pred             HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            999999999999999999999999999999998753  8999999999999987999999999999999999887653

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.5e-40  Score=363.57  Aligned_cols=217  Identities=25%  Similarity=0.441  Sum_probs=184.9

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHH-Hhhh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQ  442 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~  442 (1252)
                      .++++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (241)
T PRK10895          3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG   79 (241)
T ss_pred             eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence            3789999999963   35999999999999999999999999999999999999999999999999987766543 5678


Q ss_pred             ceEEccCCCCchh-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM  518 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-tv~~ni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal  518 (1252)
                      ++|++|++.++.. |++||+.++...   ...++.     ...+.+.++.+  |++........+||||||||++||||+
T Consensus        80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral  152 (241)
T PRK10895         80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL  152 (241)
T ss_pred             eEEeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence            9999999998875 999999875321   111111     11233455555  666667778889999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          519 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       519 ~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      +.+|++|||||||++||+.+++.+.+.++++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus       153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  226 (241)
T PRK10895        153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ  226 (241)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence            99999999999999999999999999998875 48999999999988865 89999999999999999988754

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=8.7e-40  Score=354.63  Aligned_cols=202  Identities=34%  Similarity=0.580  Sum_probs=176.7

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      ++++||+++|+.     .++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+  .+|+.++
T Consensus         1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~   73 (213)
T TIGR01277         1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS   73 (213)
T ss_pred             CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence            368999999951     468999999999999999999999999999999999999999999999987644  4678899


Q ss_pred             EEccccccCc-ccHHHHhccCC-CC-----CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPALFA-ASIFDNIAYGK-EG-----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~lf~-gTIreNl~~~~-~~-----~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      |+||+|.+|. .|++||+.++. +.     ..++++.++++..++.+.....|           ..||||||||++||||
T Consensus        74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara  142 (213)
T TIGR01277        74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC  142 (213)
T ss_pred             EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence            9999999887 49999997531 11     13456777888888877665554           3699999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecC
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGS 1229 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~ 1229 (1252)
                      ++++|+++||||||++||.++...+.+.|++..  .++|+|+|||+++.+.. ||++++|++|++++.|.
T Consensus       143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~  212 (213)
T TIGR01277       143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD  212 (213)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence            999999999999999999999999999999875  37899999999998864 89999999999999874

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=4.4e-40  Score=361.81  Aligned_cols=214  Identities=31%  Similarity=0.487  Sum_probs=178.9

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHH-Hhhhc
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQI  443 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i  443 (1252)
                      |+++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus         1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   77 (230)
T TIGR03410         1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI   77 (230)
T ss_pred             CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence            478999999974   35899999999999999999999999999999999999999999999999988776554 45679


Q ss_pred             eEEccCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000856          444 GLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP  522 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~  522 (1252)
                      +|++|++.+|+. |++||+.++........ ...     ..+.++.+ +++.....+...+||||||||++|||||+++|
T Consensus        78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~-~~~-----~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  150 (230)
T TIGR03410        78 AYVPQGREIFPRLTVEENLLTGLAALPRRS-RKI-----PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTRP  150 (230)
T ss_pred             EEeccCCcccCCCcHHHHHHHHHHhcCcch-HHH-----HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            999999999876 99999987532211110 000     01112221 12334456677899999999999999999999


Q ss_pred             CEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          523 KILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       523 ~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      +++||||||++||+.+++.+.+.|.++.+  ++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus       151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence            99999999999999999999999998753  7999999999999986 899999999999999999887

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=4.1e-40  Score=366.88  Aligned_cols=218  Identities=35%  Similarity=0.548  Sum_probs=183.4

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCC--------
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ--------  435 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~--------  435 (1252)
                      .++++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+        
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (250)
T PRK11264          3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL   79 (250)
T ss_pred             cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence            3889999999974   35899999999999999999999999999999999999999999999999886432        


Q ss_pred             HHHHhhhceEEccCCCCch-hcHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHH
Q 000856          436 LRWLRDQIGLVNQEPALFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR  511 (1252)
Q Consensus       436 ~~~~~~~i~~v~Q~~~l~~-~tv~~ni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqR  511 (1252)
                      ...+++.++|++|++.+++ .|++||+.++..   ....++...     .+.+.++.+  |+....+..+.+||||||||
T Consensus        80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr  152 (250)
T PRK11264         80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV--GLAGKETSYPRRLSGGQQQR  152 (250)
T ss_pred             HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence            2456778999999998886 599999986421   111111111     123344444  66666677888999999999


Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHH
Q 000856          512 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI  589 (1252)
Q Consensus       512 v~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~  589 (1252)
                      ++|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  232 (250)
T PRK11264        153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF  232 (250)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999999999999999999999999875 48999999999999976 8999999999999999998876


Q ss_pred             hc
Q 000856          590 AK  591 (1252)
Q Consensus       590 ~~  591 (1252)
                      +.
T Consensus       233 ~~  234 (250)
T PRK11264        233 AD  234 (250)
T ss_pred             cC
Confidence            43

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=6.7e-40  Score=363.30  Aligned_cols=221  Identities=27%  Similarity=0.462  Sum_probs=185.9

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHH-Hhhhc
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW-LRDQI  443 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~~~~i  443 (1252)
                      |+++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus         3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i   79 (242)
T TIGR03411         3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI   79 (242)
T ss_pred             EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence            789999999974   35899999999999999999999999999999999999999999999999987766554 34579


Q ss_pred             eEEccCCCCchh-cHHHHHhcCCCCCC-H-HH---HHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000856          444 GLVNQEPALFAT-TILENILYGKPEAT-M-AE---VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA  517 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-tv~~ni~~~~~~~~-~-~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARa  517 (1252)
                      +|++|++.++++ |++||+.++..... . ..   .........+.+.++.+  |++....+...+||||||||++||||
T Consensus        80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara  157 (242)
T TIGR03411        80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML  157 (242)
T ss_pred             eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence            999999999986 99999987532100 0 00   00001111233455554  67666778889999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          518 MLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       518 l~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      ++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~  231 (242)
T TIGR03411       158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA  231 (242)
T ss_pred             HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence            99999999999999999999999999999998778999999999999976 89999999999999999988754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=2.6e-40  Score=370.80  Aligned_cols=216  Identities=34%  Similarity=0.498  Sum_probs=178.9

Q ss_pred             EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHH----hh
Q 000856          366 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL----RD  441 (1252)
Q Consensus       366 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~----~~  441 (1252)
                      .++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+    ++
T Consensus        26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~  102 (269)
T cd03294          26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK  102 (269)
T ss_pred             hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence            46688888863   358999999999999999999999999999999999999999999999999877655432    35


Q ss_pred             hceEEccCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000856          442 QIGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM  518 (1252)
Q Consensus       442 ~i~~v~Q~~~l~~-~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal  518 (1252)
                      +++|++|++.+++ .|++||+.++...  ....+...     .+.+.++.+  |+.........+||||||||++|||||
T Consensus       103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral  175 (269)
T cd03294         103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREE-----RAAEALELV--GLEGWEHKYPDELSGGMQQRVGLARAL  175 (269)
T ss_pred             cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence            7999999999885 5999999875211  11111111     112333333  555556667779999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          519 LKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       519 ~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +.+|+++||||||++||+.+++.+.+.|.++.  .|+|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus       176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  251 (269)
T cd03294         176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN  251 (269)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence            99999999999999999999999999999874  37999999999999865 899999999999999999988654

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.4e-40  Score=370.79  Aligned_cols=220  Identities=32%  Similarity=0.547  Sum_probs=183.4

Q ss_pred             EEEEeEEEECCCCC--CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCC----CHHH
Q 000856          365 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL----QLRW  438 (1252)
Q Consensus       365 i~~~~v~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~----~~~~  438 (1252)
                      |+++|++++|++..  ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...    +...
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ   82 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence            78999999997422  13589999999999999999999999999999999999999999999999988653    3456


Q ss_pred             HhhhceEEccCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCcc-ccccCCCCCCChHHHHHHH
Q 000856          439 LRDQIGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIA  513 (1252)
Q Consensus       439 ~~~~i~~v~Q~~--~l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~LSgGqkqRv~  513 (1252)
                      +++.|+|++|++  .+++.|++||+.++...  .+.++....     +.+.++.+  |+. ......+.+||||||||++
T Consensus        83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~  155 (280)
T PRK13649         83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA  155 (280)
T ss_pred             HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence            778899999998  57788999999875321  122222211     12333433  554 3456778899999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          514 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       514 lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |||||+.+|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus       156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  235 (280)
T PRK13649        156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD  235 (280)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            9999999999999999999999999999999999875 48999999999999865 899999999999999999887553

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8e-40  Score=369.10  Aligned_cols=221  Identities=28%  Similarity=0.477  Sum_probs=184.7

Q ss_pred             cEEEEeEEEECCCCC---CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCC-HHHH
Q 000856          364 NIEFKNVTFSYPSRP---DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ-LRWL  439 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~---~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~  439 (1252)
                      .++++|++++|++..   ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ...+
T Consensus         4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~   83 (280)
T PRK13633          4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI   83 (280)
T ss_pred             eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence            589999999997431   246999999999999999999999999999999999999999999999999987543 3456


Q ss_pred             hhhceEEccCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 000856          440 RDQIGLVNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA  515 (1252)
Q Consensus       440 ~~~i~~v~Q~~~--l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lA  515 (1252)
                      ++.++|++|+|.  ++..|+.+|+.|+...  ....+...     .+.+.++.+  |+....++...+||||||||++||
T Consensus        84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~la  156 (280)
T PRK13633         84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE-----RVDESLKKV--GMYEYRRHAPHLLSGGQKQRVAIA  156 (280)
T ss_pred             hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHH-----HHHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHH
Confidence            788999999984  6666999999886321  11111111     112233333  555556667789999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhccCEEEEEeCCEEEEecChHHHHhc
Q 000856          516 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       516 Ral~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |||+.+|+++||||||++||+.+++.+.+.|+++.  .|+|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus       157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~  234 (280)
T PRK13633        157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE  234 (280)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence            99999999999999999999999999999999884  38999999999999988999999999999999999998654

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=5.9e-40  Score=345.17  Aligned_cols=178  Identities=34%  Similarity=0.629  Sum_probs=163.9

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      |+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++
T Consensus         1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~   78 (178)
T cd03247           1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS   78 (178)
T ss_pred             CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence            4789999999753 23589999999999999999999999999999999999999999999999988665 556778899


Q ss_pred             EEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000856          445 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI  524 (1252)
Q Consensus       445 ~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~i  524 (1252)
                      |++|++++++.|++||+                                       +.+||||||||++||||++.+|++
T Consensus        79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~  119 (178)
T cd03247          79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI  119 (178)
T ss_pred             EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence            99999999988999997                                       458999999999999999999999


Q ss_pred             EEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhccCEEEEEeCCEEEEec
Q 000856          525 LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETG  583 (1252)
Q Consensus       525 lllDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g  583 (1252)
                      +||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus       120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~  178 (178)
T cd03247         120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG  178 (178)
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence            99999999999999999999999887789999999999999889999999999998754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=4.8e-40  Score=374.21  Aligned_cols=216  Identities=24%  Similarity=0.406  Sum_probs=185.8

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      ++++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++
T Consensus         3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig   78 (301)
T TIGR03522         3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG   78 (301)
T ss_pred             EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence            789999999963   459999999999999999999999999999999999999999999999998866 3456778899


Q ss_pred             EEccCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          445 LVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       445 ~v~Q~~~l~~~-tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      |+||++.++.. |++||+.+....  ...++...     .+.+.++.+  |++...++...+||||||||++|||||+.+
T Consensus        79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~  151 (301)
T TIGR03522        79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD  151 (301)
T ss_pred             EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence            99999999876 999999753211  11111111     123344444  677777788899999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |+++||||||++||+.+++.+++.++++.+++|+|++||+++++.. ||||++|++|+++..|+.+++.+.
T Consensus       152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  222 (301)
T TIGR03522       152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA  222 (301)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence            9999999999999999999999999998778999999999999876 899999999999999999998654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=3.9e-40  Score=375.47  Aligned_cols=200  Identities=27%  Similarity=0.478  Sum_probs=174.1

Q ss_pred             ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEEEccccccCcc-cHH
Q 000856         1025 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIF 1103 (1252)
Q Consensus      1025 ~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~g-TIr 1103 (1252)
                      .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+||++.+|.. |++
T Consensus         6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~   84 (302)
T TIGR01188         6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR   84 (302)
T ss_pred             eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence            369999999999999999999999999999999999999999999999999876 445678899999999998875 999


Q ss_pred             HHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCC
Q 000856         1104 DNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 1177 (1252)
Q Consensus      1104 eNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS 1177 (1252)
                      ||+.+...  ..+    ++++.++++..++.+..       +..+    ..||||||||++|||||+++|++|||||||+
T Consensus        85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSgG~~qrv~la~al~~~p~lllLDEPt~  153 (302)
T TIGR01188        85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-------DRPV----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT  153 (302)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------CCch----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            99976321  122    33466777777775433       2333    4699999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcC
Q 000856         1178 ALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1178 ~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      +||+.+...+++.|++.. +++|||++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus       154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  214 (302)
T TIGR01188       154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR  214 (302)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence            999999999999999875 47899999999999864 899999999999999999998764

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-40  Score=366.70  Aligned_cols=220  Identities=29%  Similarity=0.406  Sum_probs=181.2

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCcccc--CCCH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIK--TLQL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~--~~~~  436 (1252)
                      .|+++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++.  ..+.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   80 (253)
T PRK14267          4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP   80 (253)
T ss_pred             eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence            4899999999964   3489999999999999999999999999999999999987     4999999999986  3455


Q ss_pred             HHHhhhceEEccCCCCchh-cHHHHHhcCCCCC----CHHHHHHHHHHhcHHHHHhhC--CCCccccccCCCCCCChHHH
Q 000856          437 RWLRDQIGLVNQEPALFAT-TILENILYGKPEA----TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQK  509 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~-tv~~ni~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~g~~LSgGqk  509 (1252)
                      ..++++++|++|++.+|.. |++||+.++....    ..++....     +.+.++.+  ...+.......+.+||||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~  155 (253)
T PRK14267         81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDER-----VEWALKKAALWDEVKDRLNDYPSNLSGGQR  155 (253)
T ss_pred             HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHH-----HHHHHHHcCCccchhhhhccChhhCCHHHH
Confidence            5677889999999999876 9999998753110    11111111     11122222  11112345667889999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       510 qRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      ||++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       156 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  235 (253)
T PRK14267        156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKV  235 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998767999999999999865 899999999999999999988


Q ss_pred             Hhc
Q 000856          589 IAK  591 (1252)
Q Consensus       589 ~~~  591 (1252)
                      ...
T Consensus       236 ~~~  238 (253)
T PRK14267        236 FEN  238 (253)
T ss_pred             HhC
Confidence            653

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=7.3e-40  Score=363.62  Aligned_cols=213  Identities=23%  Similarity=0.363  Sum_probs=177.3

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccC--CCCCceEEECCcccCCCCHHHH-hc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY--DPTAGKVMIDGKDIRRLNLKSL-RL 1086 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~--~p~~G~I~idG~di~~~~~~~l-R~ 1086 (1252)
                      |+++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+.  +|++|+|.+||.++...+.... |.
T Consensus         1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   77 (243)
T TIGR01978         1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA   77 (243)
T ss_pred             CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence            478999999963   36999999999999999999999999999999999994  7999999999999988877654 45


Q ss_pred             ccEEEccccccCcc-cHHHHhccCCCC---------CC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChh
Q 000856         1087 KIGLVQQEPALFAA-SIFDNIAYGKEG---------AT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGG 1152 (1252)
Q Consensus      1087 ~i~~VpQd~~lf~g-TIreNl~~~~~~---------~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgG 1152 (1252)
                      .++|+||++.+|.+ |+++|+.+....         .+    ++.+.++++..++.+..      .+..+.   ..||||
T Consensus        78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G  148 (243)
T TIGR01978        78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGG  148 (243)
T ss_pred             ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHH
Confidence            69999999998875 899998643110         11    23455566666654211      122221   249999


Q ss_pred             HHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhc--cCEEEEEeCCEEEEecC
Q 000856         1153 QKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG--VDCIGVVQDGRIVEQGS 1229 (1252)
Q Consensus      1153 QrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~--~DrI~vl~~G~Ive~G~ 1229 (1252)
                      ||||++|||||+++|++|||||||++||+.+...+.+.|++.. +++|||+|||+++.+..  ||+|++|++|++++.|+
T Consensus       149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~  228 (243)
T TIGR01978       149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD  228 (243)
T ss_pred             HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence            9999999999999999999999999999999999999999875 47899999999999875  79999999999999999


Q ss_pred             hhhhh
Q 000856         1230 HSELV 1234 (1252)
Q Consensus      1230 ~~eLl 1234 (1252)
                      ++++-
T Consensus       229 ~~~~~  233 (243)
T TIGR01978       229 VELAK  233 (243)
T ss_pred             HHHhc
Confidence            98654

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=1.3e-39  Score=362.74  Aligned_cols=227  Identities=28%  Similarity=0.404  Sum_probs=187.2

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCC----CCceEEECCcccCCCCHHHH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP----TAGKVMIDGKDIRRLNLKSL 1084 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p----~~G~I~idG~di~~~~~~~l 1084 (1252)
                      .++++||+++| +   .++|+|+||+|++||+++|+|+||||||||+++|+|+++|    ++|+|.+||.+++..  +..
T Consensus         4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~   77 (254)
T PRK10418          4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR   77 (254)
T ss_pred             EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence            58999999999 2   2599999999999999999999999999999999999999    999999999998632  223


Q ss_pred             hcccEEEccccc-cCc--ccHHHHhccC----CCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 000856         1085 RLKIGLVQQEPA-LFA--ASIFDNIAYG----KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 1157 (1252)
Q Consensus      1085 R~~i~~VpQd~~-lf~--gTIreNl~~~----~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1157 (1252)
                      ++.++||||++. .|.  .|+.+|+...    .....+++++++++.+++.++.        +.++.....||||||||+
T Consensus        78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~~~LS~Gq~qrv  149 (254)
T PRK10418         78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAA--------RVLKLYPFEMSGGMLQRM  149 (254)
T ss_pred             cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChh--------hhhhcCCcccCHHHHHHH
Confidence            467999999985 343  5787776431    1223456778888888876531        122334467999999999


Q ss_pred             HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhh
Q 000856         1158 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1158 aLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl 1234 (1252)
                      +|||||+++|++|||||||++||+.+...+.+.|++..+  ++|||++||+++.+. .||++++|++|++++.|++++++
T Consensus       150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~  229 (254)
T PRK10418        150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF  229 (254)
T ss_pred             HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence            999999999999999999999999999999999998753  789999999999986 58999999999999999999998


Q ss_pred             cCCCc-hhHHHHHHhh
Q 000856         1235 SRPDG-AYSRLLQLQH 1249 (1252)
Q Consensus      1235 ~~~~g-~y~~l~~~q~ 1249 (1252)
                      +.+.. .++.++..+.
T Consensus       230 ~~~~~~~~~~~~~~~~  245 (254)
T PRK10418        230 NAPKHAVTRSLVSAHL  245 (254)
T ss_pred             hCCCCHHHHHHHHhhh
Confidence            76544 3445665543

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.1e-40  Score=366.35  Aligned_cols=220  Identities=29%  Similarity=0.461  Sum_probs=181.3

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccccCC--CH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTL--QL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~--~~  436 (1252)
                      .|+++|++++|++   .++|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.++|.++...  +.
T Consensus        12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   88 (258)
T PRK14268         12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV   88 (258)
T ss_pred             eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence            5999999999963   3489999999999999999999999999999999999985     899999999988643  23


Q ss_pred             HHHhhhceEEccCCCCchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhC--CCCccccccCCCCCCChHHHHHH
Q 000856          437 RWLRDQIGLVNQEPALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQRI  512 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~g~~LSgGqkqRv  512 (1252)
                      ..+++.++|++|++.+|+.|++||+.++...  ...++...     .+.+.++.+  ........++.+.+||||||||+
T Consensus        89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv  163 (258)
T PRK14268         89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDG-----VVENALRSAALWDETSDRLKSPALSLSGGQQQRL  163 (258)
T ss_pred             HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHH
Confidence            4567789999999999889999999875311  11211111     111222222  00112345667789999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          513 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       513 ~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus       164 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  243 (258)
T PRK14268        164 CIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHN  243 (258)
T ss_pred             HHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            9999999999999999999999999999999999998778999999999999865 899999999999999999988643

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=7.9e-40  Score=362.58  Aligned_cols=204  Identities=31%  Similarity=0.471  Sum_probs=174.5

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.     .+++.+
T Consensus        12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i   83 (257)
T PRK11247         12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT   83 (257)
T ss_pred             cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence            5999999999964   35899999999999999999999999999999999999999999999997653     456789


Q ss_pred             eEEccCCCCch-hcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000856          444 GLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP  522 (1252)
Q Consensus       444 ~~v~Q~~~l~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~  522 (1252)
                      +|++|++.+++ .|++||+.++......+++.         +.++.+  |+.....+.+.+||||||||++|||||+.+|
T Consensus        84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~LSgGqkqrl~laraL~~~p  152 (257)
T PRK11247         84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAAL---------QALAAV--GLADRANEWPAALSGGQKQRVALARALIHRP  152 (257)
T ss_pred             EEEecCccCCCCCcHHHHHHhcccchHHHHHH---------HHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            99999999887 59999998864211112222         233333  5555567778899999999999999999999


Q ss_pred             CEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChH
Q 000856          523 KILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE  586 (1252)
Q Consensus       523 ~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~  586 (1252)
                      +++||||||++||+.+++.+.+.|+++.  .++|+|++||+++.+.. ||+|++|++|+++++|+.+
T Consensus       153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~  219 (257)
T PRK11247        153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD  219 (257)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence            9999999999999999999999998874  37999999999999865 8999999999999888654

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.5e-40  Score=368.12  Aligned_cols=217  Identities=28%  Similarity=0.425  Sum_probs=179.7

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCcccc--CCCHHHHhhh
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIK--TLQLRWLRDQ  442 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~~~  442 (1252)
                      |+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.  +.+...++++
T Consensus         2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~   78 (271)
T PRK13638          2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ   78 (271)
T ss_pred             eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence            689999999964   34899999999999999999999999999999999999999999999999985  2334566788


Q ss_pred             ceEEccCCC--CchhcHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000856          443 IGLVNQEPA--LFATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM  518 (1252)
Q Consensus       443 i~~v~Q~~~--l~~~tv~~ni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal  518 (1252)
                      ++|++|++.  ++..|+.+|+.++..  .....+....     +.+.++.+  |+.......+.+||||||||++|||||
T Consensus        79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL  151 (271)
T PRK13638         79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGAL  151 (271)
T ss_pred             eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence            999999985  566789999987421  1122221111     12233333  444445566789999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          519 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       519 ~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +.+|+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus       152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  226 (271)
T PRK13638        152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC  226 (271)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            99999999999999999999999999999875 48999999999999865 899999999999999999887654

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=3.3e-40  Score=360.07  Aligned_cols=209  Identities=35%  Similarity=0.498  Sum_probs=173.7

Q ss_pred             EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          365 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       365 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      ++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..     .++.+
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i   75 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR   75 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence            47899999997421 1469999999999999999999999999999999999999999999999988753     35679


Q ss_pred             eEEccCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcc
Q 000856          444 GLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       444 ~~v~Q~~~l~~-~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~  520 (1252)
                      +|++|++.++. .|++||+.++...  ....+..     ..+.+.++.+  |++........+||||||||++|||||+.
T Consensus        76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~  148 (220)
T cd03293          76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-----ERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV  148 (220)
T ss_pred             EEEecccccccCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence            99999999887 5999999875321  1111111     1122344444  56555667778999999999999999999


Q ss_pred             CCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEe--CCEEEEecCh
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQ--QGQVVETGTH  585 (1252)
Q Consensus       521 ~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~--~G~i~~~g~~  585 (1252)
                      +|+++||||||++||+.+++.+.+.|+++.  .++|+|++||+++.+.. ||++++|+  +|+++++++.
T Consensus       149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  218 (220)
T cd03293         149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV  218 (220)
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence            999999999999999999999999999874  37999999999998865 89999999  7999988764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=5.4e-40  Score=361.13  Aligned_cols=213  Identities=35%  Similarity=0.518  Sum_probs=174.6

Q ss_pred             EEEEeEEEECCCCC-CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCH---HHHh
Q 000856          365 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL---RWLR  440 (1252)
Q Consensus       365 i~~~~v~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~  440 (1252)
                      |+++|++++|++.. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.   ..++
T Consensus         2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (228)
T cd03257           2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR   81 (228)
T ss_pred             eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence            68999999996431 1258999999999999999999999999999999999999999999999999877663   4677


Q ss_pred             hhceEEccCC--CCc-hhcHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHhhCCCCcc-ccccCCCCCCChHHHHHHH
Q 000856          441 DQIGLVNQEP--ALF-ATTILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIA  513 (1252)
Q Consensus       441 ~~i~~v~Q~~--~l~-~~tv~~ni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~LSgGqkqRv~  513 (1252)
                      ++++|++|++  .++ ..|++||+.++...   ...++.....    ..+.++.+  |+. ...+..+.+||||||||++
T Consensus        82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~  155 (228)
T cd03257          82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA  155 (228)
T ss_pred             ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH----HHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence            8899999999  344 45999999764211   1111111100    02334444  553 4567788899999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEec
Q 000856          514 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG  583 (1252)
Q Consensus       514 lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g  583 (1252)
                      |||||+.+|+++||||||++||+.+++.+.+.|+++.+  |+|+|++||+++.+.. ||+|++|++|++++.|
T Consensus       156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g  228 (228)
T cd03257         156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG  228 (228)
T ss_pred             HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence            99999999999999999999999999999999998853  8999999999999875 8999999999998754

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.6e-40  Score=365.27  Aligned_cols=220  Identities=27%  Similarity=0.444  Sum_probs=181.6

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC--C---CCcEEEECCccccC--CCH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--P---NAGHVLLDNVDIKT--LQL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~--~---~~G~i~~~g~~~~~--~~~  436 (1252)
                      .|+++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|+++..  .+.
T Consensus        12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~   88 (259)
T PRK14274         12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL   88 (259)
T ss_pred             eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence            5899999999974   358999999999999999999999999999999999997  3   69999999998863  344


Q ss_pred             HHHhhhceEEccCCCCchhcHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHhhC--CCCccccccCCCCCCChHHHHH
Q 000856          437 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQR  511 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~g~~LSgGqkqR  511 (1252)
                      ..+++.++|++|++.+++.|++||+.++....   ..++....     +.+.++.+  .+.+.+..+..+.+||||||||
T Consensus        89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr  163 (259)
T PRK14274         89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEI-----VEKSLKDVALWDEVKDRLHTQALSLSGGQQQR  163 (259)
T ss_pred             HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHH-----HHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence            56778899999999999889999998753211   11111111     11222222  1111234567788999999999


Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          512 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       512 v~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      ++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus       164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  243 (259)
T PRK14274        164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFS  243 (259)
T ss_pred             HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence            99999999999999999999999999999999999998778999999999999865 89999999999999999999865


Q ss_pred             c
Q 000856          591 K  591 (1252)
Q Consensus       591 ~  591 (1252)
                      +
T Consensus       244 ~  244 (259)
T PRK14274        244 N  244 (259)
T ss_pred             C
Confidence            3

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=6.8e-40  Score=368.56  Aligned_cols=214  Identities=30%  Similarity=0.534  Sum_probs=188.2

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .++++||+.+|..  +..+|+||||+|++||.+|++||||||||||+++|+|+..|++|+|.++|.|...- ...+|+++
T Consensus         4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i   80 (293)
T COG1131           4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI   80 (293)
T ss_pred             eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence            4789999999962  24699999999999999999999999999999999999999999999999998765 67889999


Q ss_pred             EEEccccccCc-ccHHHHhccCC-----C-CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHH
Q 000856         1089 GLVQQEPALFA-ASIFDNIAYGK-----E-GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161 (1252)
Q Consensus      1089 ~~VpQd~~lf~-gTIreNl~~~~-----~-~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLAR 1161 (1252)
                      |||||+|.++. -|++|||.+..     + ...++.+.+.++..++.+.-       +.++    ..||+|||||++||+
T Consensus        81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~----~~lS~G~kqrl~ia~  149 (293)
T COG1131          81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKKV----RTLSGGMKQRLSIAL  149 (293)
T ss_pred             EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccch----hhcCHHHHHHHHHHH
Confidence            99999998775 59999998642     1 12356788899999887621       2333    469999999999999


Q ss_pred             HHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC-C-CeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcC
Q 000856         1162 AVLKNPAILLLDEATSALDAESECVLQEALERLMR-G-RTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1162 ALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~-~-~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      ||+++|++|||||||++||+.+...+++.|+++.+ + +||++.||.++.+.. ||||++|++|+++..|+++++...
T Consensus       150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~  227 (293)
T COG1131         150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK  227 (293)
T ss_pred             HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence            99999999999999999999999999999999874 4 799999999999976 899999999999999999998654

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=4.3e-40  Score=357.61  Aligned_cols=207  Identities=31%  Similarity=0.543  Sum_probs=173.6

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      |+++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..  +++++
T Consensus         1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~   75 (213)
T cd03301           1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA   75 (213)
T ss_pred             CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence            478999999974   3589999999999999999999999999999999999999999999999998655432  35799


Q ss_pred             EEccCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          445 LVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       445 ~v~Q~~~l~~-~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      |++|++.++. .|++||+.++...  ...++..+     .+.+.++.+  |++....+.+.+||||||||++||||++.+
T Consensus        76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~  148 (213)
T cd03301          76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE  148 (213)
T ss_pred             EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence            9999999886 4999999875321  11222111     112333444  566566777789999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEec
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG  583 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g  583 (1252)
                      |+++||||||++||+.+++.+.+.|+++.  .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus       149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g  213 (213)
T cd03301         149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG  213 (213)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence            99999999999999999999999999875  38999999999999876 8999999999998765

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-39  Score=366.11  Aligned_cols=220  Identities=29%  Similarity=0.434  Sum_probs=180.5

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccccC--CCH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~~  436 (1252)
                      .++++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  .+.
T Consensus        21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   97 (268)
T PRK14248         21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV   97 (268)
T ss_pred             eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence            5899999999963   358999999999999999999999999999999999864     799999999998864  334


Q ss_pred             HHHhhhceEEccCCCCchhcHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHhhC--CCCccccccCCCCCCChHHHHH
Q 000856          437 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQR  511 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~g~~LSgGqkqR  511 (1252)
                      ..++++++|++|++.+|+.|++||+.++....   ........     +.+.+..+  ..++....+..+.+||||||||
T Consensus        98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr  172 (268)
T PRK14248         98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEI-----VEESLTKAALWDEVKDRLHSSALSLSGGQQQR  172 (268)
T ss_pred             HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence            45677899999999999889999998753111   11111111     11112221  1112234567788999999999


Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          512 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       512 v~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      ++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       173 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~  252 (268)
T PRK14248        173 LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFT  252 (268)
T ss_pred             HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999999999999999999999999999999999998767899999999998865 89999999999999999988765


Q ss_pred             c
Q 000856          591 K  591 (1252)
Q Consensus       591 ~  591 (1252)
                      .
T Consensus       253 ~  253 (268)
T PRK14248        253 S  253 (268)
T ss_pred             C
Confidence            3

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=1.7e-39  Score=363.89  Aligned_cols=223  Identities=25%  Similarity=0.427  Sum_probs=187.4

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCC---CceEEECCcccCCC-----C
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT---AGKVMIDGKDIRRL-----N 1080 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~---~G~I~idG~di~~~-----~ 1080 (1252)
                      -++++||+++|++   .++|+|+||+|++||+++|+|+||||||||+++|+|+++|+   +|+|.+||.++...     +
T Consensus         4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~   80 (262)
T PRK09984          4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD   80 (262)
T ss_pred             EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence            4899999999963   36999999999999999999999999999999999999986   49999999998653     3


Q ss_pred             HHHHhcccEEEccccccCc-ccHHHHhccCCC--------------CCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCC
Q 000856         1081 LKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--------------GATEAEVVEAARAANVHGFVSALPNAYKTPVGER 1145 (1252)
Q Consensus      1081 ~~~lR~~i~~VpQd~~lf~-gTIreNl~~~~~--------------~~~deei~~al~~~~l~~~i~~lp~gldt~vge~ 1145 (1252)
                      ...+|++++|+||++.+|. .|+++|+.++..              ...++++.++++..++.+....           .
T Consensus        81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~  149 (262)
T PRK09984         81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------R  149 (262)
T ss_pred             HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------C
Confidence            4567889999999998887 599999986421              1123456777777777654433           2


Q ss_pred             CCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhh-hccCEEEEEeCC
Q 000856         1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTI-RGVDCIGVVQDG 1222 (1252)
Q Consensus      1146 G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti-~~~DrI~vl~~G 1222 (1252)
                      ...||||||||++||||++.+|++|||||||++||..+...+.+.|++..  +++|+|++||+++.+ ..||+|++|++|
T Consensus       150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g  229 (262)
T PRK09984        150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG  229 (262)
T ss_pred             ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence            34699999999999999999999999999999999999999999999875  378999999999986 558999999999


Q ss_pred             EEEEecChhhhhcCCCchhHHHHHHh
Q 000856         1223 RIVEQGSHSELVSRPDGAYSRLLQLQ 1248 (1252)
Q Consensus      1223 ~Ive~G~~~eLl~~~~g~y~~l~~~q 1248 (1252)
                      ++++.|+++++ .  +....+++...
T Consensus       230 ~i~~~g~~~~~-~--~~~~~~~~~~~  252 (262)
T PRK09984        230 HVFYDGSSQQF-D--NERFDHLYRSI  252 (262)
T ss_pred             EEEEeCCHHHh-c--cHHHHHHHhhh
Confidence            99999999997 2  33456665543

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.5e-40  Score=364.81  Aligned_cols=216  Identities=30%  Similarity=0.461  Sum_probs=183.1

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      ++++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (255)
T PRK11231          3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA   79 (255)
T ss_pred             EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence            789999999963   35899999999999999999999999999999999999999999999999988777777778899


Q ss_pred             EEccCCCCchh-cHHHHHhcCCCCC----C--HHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 000856          445 LVNQEPALFAT-TILENILYGKPEA----T--MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA  517 (1252)
Q Consensus       445 ~v~Q~~~l~~~-tv~~ni~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARa  517 (1252)
                      |++|++.++.+ |++||+.++....    .  ..+..     ..+.+.++.+  |++......+..||||||||++||||
T Consensus        80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lara  152 (255)
T PRK11231         80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDN-----ARVNQAMEQT--RINHLADRRLTDLSGGQRQRAFLAMV  152 (255)
T ss_pred             EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHH-----HHHHHHHHHc--CCHHHHcCCcccCCHHHHHHHHHHHH
Confidence            99999988876 9999998863210    0  01100     1112223332  55555667788999999999999999


Q ss_pred             hccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          518 MLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       518 l~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      ++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..|+.+++..
T Consensus       153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  227 (255)
T PRK11231        153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT  227 (255)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence            999999999999999999999999999999875 48999999999999876 89999999999999999888754

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.3e-40  Score=365.41  Aligned_cols=217  Identities=32%  Similarity=0.537  Sum_probs=183.3

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCC---------
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ---------  435 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~---------  435 (1252)
                      |+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+         
T Consensus         1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   77 (252)
T TIGR03005         1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA   77 (252)
T ss_pred             CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence            478999999964   35899999999999999999999999999999999999999999999999886542         


Q ss_pred             ----HHHHhhhceEEccCCCCch-hcHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChH
Q 000856          436 ----LRWLRDQIGLVNQEPALFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG  507 (1252)
Q Consensus       436 ----~~~~~~~i~~v~Q~~~l~~-~tv~~ni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgG  507 (1252)
                          ...+++.++|++|++.++. .|++||+.++..   .....+..     ..+.+.++.+  |++...++.+.+||||
T Consensus        78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G  150 (252)
T TIGR03005        78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE-----KRAMELLDMV--GLADKADHMPAQLSGG  150 (252)
T ss_pred             chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhHhhcChhhcCHH
Confidence                2356778999999999886 599999987521   11111111     1223445554  6666677788899999


Q ss_pred             HHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecC
Q 000856          508 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT  584 (1252)
Q Consensus       508 qkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~  584 (1252)
                      ||||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus       151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~  230 (252)
T TIGR03005       151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK  230 (252)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence            99999999999999999999999999999999999999998753  8999999999999865 89999999999999999


Q ss_pred             hHHHHhc
Q 000856          585 HEELIAK  591 (1252)
Q Consensus       585 ~~~l~~~  591 (1252)
                      ++++.+.
T Consensus       231 ~~~~~~~  237 (252)
T TIGR03005       231 PDEIFRQ  237 (252)
T ss_pred             HHHHhcC
Confidence            9888654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-39  Score=362.73  Aligned_cols=222  Identities=29%  Similarity=0.507  Sum_probs=182.4

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC-----CcEEEECCccccCC--CH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-----AGHVLLDNVDIKTL--QL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~-----~G~i~~~g~~~~~~--~~  436 (1252)
                      .++++|++|+|++   ..+|+|+||+|++|++++|+||||||||||+++|+|+++|+     +|+|.++|.++...  +.
T Consensus         4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~   80 (251)
T PRK14249          4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV   80 (251)
T ss_pred             eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence            5899999999964   34899999999999999999999999999999999999997     69999999988643  34


Q ss_pred             HHHhhhceEEccCCCCchhcHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHH
Q 000856          437 RWLRDQIGLVNQEPALFATTILENILYGKPE--A-TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIA  513 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~  513 (1252)
                      ..+++.++|++|++.+++.|++||+.++...  . ..++..+....  +.+.. .+.+++....++.+.+||||||||++
T Consensus        81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~--~l~~~-~l~~~l~~~~~~~~~~LS~Gq~qrv~  157 (251)
T PRK14249         81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEK--SLRQA-ALWDEVKDNLHKSGLALSGGQQQRLC  157 (251)
T ss_pred             HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHH--HHHHh-CCchhhhhHhhCCcccCCHHHHHHHH
Confidence            5677889999999999988999999876321  1 11111111110  11111 11112234467788899999999999


Q ss_pred             HHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          514 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       514 lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      |||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus       158 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~  236 (251)
T PRK14249        158 IARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR  236 (251)
T ss_pred             HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhC
Confidence            999999999999999999999999999999999988668999999999999876 799999999999999999887543

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-39  Score=363.01  Aligned_cols=218  Identities=32%  Similarity=0.505  Sum_probs=181.1

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccccC--CCH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--LQL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~~~  436 (1252)
                      .|+++|++++|++   .++++|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..  .+.
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~   79 (250)
T PRK14240          3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV   79 (250)
T ss_pred             eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence            5899999999974   3489999999999999999999999999999999999763     69999999998864  344


Q ss_pred             HHHhhhceEEccCCCCchhcHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHH
Q 000856          437 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TM----AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK  509 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqk  509 (1252)
                      ..+|+.++|++|++.+++.|++||+.++....   ..    +++.++++..++.       +++....++.+.+||||||
T Consensus        80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~G~~  152 (250)
T PRK14240         80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALW-------DEVKDRLKKSALGLSGGQQ  152 (250)
T ss_pred             HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-------hhhHHHHhcCCCCCCHHHH
Confidence            56778899999999988899999998753211   11    1122222222211       1222345667889999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       510 qRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      ||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  232 (250)
T PRK14240        153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL  232 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998778999999999998866 899999999999999999887


Q ss_pred             Hhc
Q 000856          589 IAK  591 (1252)
Q Consensus       589 ~~~  591 (1252)
                      ...
T Consensus       233 ~~~  235 (250)
T PRK14240        233 FTN  235 (250)
T ss_pred             HhC
Confidence            643

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=4.7e-40  Score=356.70  Aligned_cols=205  Identities=37%  Similarity=0.617  Sum_probs=172.0

Q ss_pred             EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhceE
Q 000856          366 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL  445 (1252)
Q Consensus       366 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~  445 (1252)
                      +++|++++|++. +..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus         1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~   79 (211)
T cd03225           1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL   79 (211)
T ss_pred             CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence            368999999742 1458999999999999999999999999999999999999999999999999887777777889999


Q ss_pred             EccCCC--CchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          446 VNQEPA--LFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       446 v~Q~~~--l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      ++|++.  ++..|++||+.++...  ....+...     .+.+.++.+  |++....+.+.+||||||||++|||||+.+
T Consensus        80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~  152 (211)
T cd03225          80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD  152 (211)
T ss_pred             EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            999984  5667999999875321  11111111     122334444  555556777889999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCE
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQ  578 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~  578 (1252)
                      |+++||||||++||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|+
T Consensus       153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~  211 (211)
T cd03225         153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK  211 (211)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence            99999999999999999999999999885 48999999999999987 89999999984

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-39  Score=362.85  Aligned_cols=216  Identities=29%  Similarity=0.445  Sum_probs=182.7

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      |+++|++++|++   ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~   79 (258)
T PRK13548          3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA   79 (258)
T ss_pred             EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence            789999999974   35899999999999999999999999999999999999999999999999988777777778899


Q ss_pred             EEccCCCC-chhcHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc--
Q 000856          445 LVNQEPAL-FATTILENILYGKPEA--TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML--  519 (1252)
Q Consensus       445 ~v~Q~~~l-~~~tv~~ni~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~--  519 (1252)
                      |++|++.+ +..|++||+.++....  ...+...     .+.+.++.+  |+.......+.+||||||||++|||||+  
T Consensus        80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGe~qrv~la~al~~~  152 (258)
T PRK13548         80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDA-----LVAAALAQV--DLAHLAGRDYPQLSGGEQQRVQLARVLAQL  152 (258)
T ss_pred             EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHH-----HHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence            99999987 4569999998753211  1111111     112233333  5555566778899999999999999999  


Q ss_pred             ----cCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          520 ----KNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       520 ----~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                          .+|+++||||||++||+.+++.+.+.|+++.  .|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus       153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~  230 (258)
T PRK13548        153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT  230 (258)
T ss_pred             cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence                5999999999999999999999999999875  48999999999999875 89999999999999999888754

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=8.2e-40  Score=365.37  Aligned_cols=219  Identities=32%  Similarity=0.524  Sum_probs=183.6

Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCC--------
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL--------  434 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~--------  434 (1252)
                      +.++++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...        
T Consensus         4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (257)
T PRK10619          4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK   80 (257)
T ss_pred             ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence            45999999999963   3589999999999999999999999999999999999999999999999987532        


Q ss_pred             -----CHHHHhhhceEEccCCCCchh-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHhhCCCCccccc-cCCCCCC
Q 000856          435 -----QLRWLRDQIGLVNQEPALFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQV-GERGVQL  504 (1252)
Q Consensus       435 -----~~~~~~~~i~~v~Q~~~l~~~-tv~~ni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~g~~L  504 (1252)
                           ....+++.++|++|++.++.. |++||+.++..   .....+..     ..+.+.++.+  |+.... +..+.+|
T Consensus        81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~L  153 (257)
T PRK10619         81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR-----ERAVKYLAKV--GIDERAQGKYPVHL  153 (257)
T ss_pred             cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHc--CCChhhhhCCcccC
Confidence                 134567789999999999875 99999976421   11111111     1122344444  565543 6778899


Q ss_pred             ChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEe
Q 000856          505 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVET  582 (1252)
Q Consensus       505 SgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~  582 (1252)
                      |||||||++|||||+++|+++||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||||++|++|++++.
T Consensus       154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~  233 (257)
T PRK10619        154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE  233 (257)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence            9999999999999999999999999999999999999999999885 48999999999999986 899999999999999


Q ss_pred             cChHHHHhc
Q 000856          583 GTHEELIAK  591 (1252)
Q Consensus       583 g~~~~l~~~  591 (1252)
                      |+++++...
T Consensus       234 ~~~~~~~~~  242 (257)
T PRK10619        234 GAPEQLFGN  242 (257)
T ss_pred             CCHHHhhhC
Confidence            999887643

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-40  Score=320.08  Aligned_cols=217  Identities=32%  Similarity=0.539  Sum_probs=185.2

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCC---------
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL---------  434 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~---------  434 (1252)
                      .++++|++++|++.   .+|+++|++-++|+.+.|+|.|||||||++++|.=+..|+.|+|.++|++++-.         
T Consensus         6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~   82 (256)
T COG4598           6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP   82 (256)
T ss_pred             ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence            58999999999753   499999999999999999999999999999999999999999999999887421         


Q ss_pred             ----CHHHHhhhceEEccCCCCchh-cHHHHHhcCCCC---CCH-HHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCC
Q 000856          435 ----QLRWLRDQIGLVNQEPALFAT-TILENILYGKPE---ATM-AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS  505 (1252)
Q Consensus       435 ----~~~~~~~~i~~v~Q~~~l~~~-tv~~ni~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LS  505 (1252)
                          ....+|.+.++|+|+..|++. ||.||+.-+.-.   .+. +.++.+      ..++...  |+.......+..||
T Consensus        83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~A------e~~L~kV--Gi~ek~~~YP~~LS  154 (256)
T COG4598          83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERA------EKYLAKV--GIAEKADAYPAHLS  154 (256)
T ss_pred             CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHH------HHHHHHh--CchhhhhcCccccC
Confidence                134578899999999999976 999999754211   111 222221      2334433  77777778888999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEec
Q 000856          506 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG  583 (1252)
Q Consensus       506 gGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g  583 (1252)
                      |||+||+||||||+.+|+++++|||||+|||+-.-++.+.++++. .|+|.++|||.+.+.+. ..+|++|++|.|-|+|
T Consensus       155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G  234 (256)
T COG4598         155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG  234 (256)
T ss_pred             chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccC
Confidence            999999999999999999999999999999999999999999986 59999999999999998 5999999999999999


Q ss_pred             ChHHHHhc
Q 000856          584 THEELIAK  591 (1252)
Q Consensus       584 ~~~~l~~~  591 (1252)
                      +|+++..+
T Consensus       235 ~P~qvf~n  242 (256)
T COG4598         235 PPEQVFGN  242 (256)
T ss_pred             ChHHHhcC
Confidence            99998765

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.9e-40  Score=377.25  Aligned_cols=205  Identities=29%  Similarity=0.440  Sum_probs=172.4

Q ss_pred             CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCc----cccCCCHHHH---h-hhceEEccCCC
Q 000856          380 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV----DIKTLQLRWL---R-DQIGLVNQEPA  451 (1252)
Q Consensus       380 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~----~~~~~~~~~~---~-~~i~~v~Q~~~  451 (1252)
                      ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+    ++...+...+   | ++++||+|++.
T Consensus        37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~  116 (382)
T TIGR03415        37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA  116 (382)
T ss_pred             EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence            45899999999999999999999999999999999999999999999996    5655554433   3 57999999999


Q ss_pred             Cch-hcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 000856          452 LFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD  528 (1252)
Q Consensus       452 l~~-~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlD  528 (1252)
                      +|+ .|++||+.++...  ...++..     ..+.+.++.+  |++......+.+||||||||++|||||+.+|+|||||
T Consensus       117 l~p~~Tv~eNi~~~~~~~g~~~~~~~-----~~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD  189 (382)
T TIGR03415       117 LMPWLTVEENVAFGLEMQGMPEAERR-----KRVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD  189 (382)
T ss_pred             CCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            997 5999999986421  1111111     1122334444  6666667777899999999999999999999999999


Q ss_pred             CCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          529 EATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       529 Epts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      ||||+||+.+++.+++.|.++.+  ++|+|+|||+++++.. ||+|++|++|++++.|+++++..+
T Consensus       190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~  255 (382)
T TIGR03415       190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN  255 (382)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence            99999999999999999998853  8999999999999855 899999999999999999998764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=1.1e-39  Score=356.55  Aligned_cols=213  Identities=29%  Similarity=0.430  Sum_probs=180.3

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhc
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++++|++   ..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus         7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i   83 (225)
T PRK10247          7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV   83 (225)
T ss_pred             eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence            5899999999963   3589999999999999999999999999999999999999999999999998887777778899


Q ss_pred             eEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhccCC
Q 000856          444 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGGQKQRIAIARAMLKNP  522 (1252)
Q Consensus       444 ~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~LSgGqkqRv~lARal~~~~  522 (1252)
                      +|++|++.+++.|++||+.++..........     ..+.+.++.+  |+. +.....+.+||||||||++|||||+++|
T Consensus        84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~p  156 (225)
T PRK10247         84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP-----AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQFMP  156 (225)
T ss_pred             EEEecccccccccHHHHHHhHHhhcCCChHH-----HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            9999999999889999998642100000000     1122344444  553 4567888999999999999999999999


Q ss_pred             CEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhccCEEEEEe-CCEEEEecChH
Q 000856          523 KILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQ-QGQVVETGTHE  586 (1252)
Q Consensus       523 ~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~-~G~i~~~g~~~  586 (1252)
                      +++||||||++||+.+.+.+.+.|.++.  .++|+|++||+++.+..||++++|+ ++..+++|+|+
T Consensus       157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~  223 (225)
T PRK10247        157 KVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE  223 (225)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence            9999999999999999999999999874  3889999999999998899999995 66677888775

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.4e-39  Score=377.97  Aligned_cols=212  Identities=31%  Similarity=0.496  Sum_probs=180.9

Q ss_pred             eEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCC----HHHHhcccE
Q 000856         1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN----LKSLRLKIG 1089 (1252)
Q Consensus      1014 nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~----~~~lR~~i~ 1089 (1252)
                      |++++|++   .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+    ....|++++
T Consensus         4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~   78 (354)
T TIGR02142         4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG   78 (354)
T ss_pred             EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence            78999953   23 5 999999999999999999999999999999999999999999999986532    345678999


Q ss_pred             EEccccccCcc-cHHHHhccCCCCCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHc
Q 000856         1090 LVQQEPALFAA-SIFDNIAYGKEGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 1164 (1252)
Q Consensus      1090 ~VpQd~~lf~g-TIreNl~~~~~~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl 1164 (1252)
                      ||||++.+|.. |++||+.++.....    ++.+.++++..++.++....           ...||||||||++|||||+
T Consensus        79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGqkqRvalAraL~  147 (354)
T TIGR02142        79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRL-----------PGRLSGGEKQRVAIGRALL  147 (354)
T ss_pred             EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCC-----------hhhCCHHHHHHHHHHHHHH
Confidence            99999999975 99999987633221    23466677777765544333           3579999999999999999


Q ss_pred             cCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEecChhhhhcCCCchh
Q 000856         1165 KNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241 (1252)
Q Consensus      1165 ~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~G~~~eLl~~~~g~y 1241 (1252)
                      ++|++|||||||++||+.+...+.+.|++..+  ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...|
T Consensus       148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~  227 (354)
T TIGR02142       148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW  227 (354)
T ss_pred             cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence            99999999999999999999999999998753  7899999999999865 89999999999999999999988765444

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-39  Score=351.92  Aligned_cols=225  Identities=30%  Similarity=0.540  Sum_probs=186.6

Q ss_pred             EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC-C----CCceEEECCcccCCCCHHH
Q 000856         1010 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD-P----TAGKVMIDGKDIRRLNLKS 1083 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~-p----~~G~I~idG~di~~~~~~~ 1083 (1252)
                      ++++|++..|.... ...+++||||+|++||++||||+|||||||+.++++|+.+ |    .+|+|.++|.|+-.++.++
T Consensus         2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~   81 (316)
T COG0444           2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE   81 (316)
T ss_pred             ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence            57899999996532 2469999999999999999999999999999999999998 3    5799999999999999875


Q ss_pred             Hh----cccEEEcccccc-Cc--ccHH----HHhccCCCC--C--CHHHHHHHHHHcCchhh---HhhCCCcCCCccCCC
Q 000856         1084 LR----LKIGLVQQEPAL-FA--ASIF----DNIAYGKEG--A--TEAEVVEAARAANVHGF---VSALPNAYKTPVGER 1145 (1252)
Q Consensus      1084 lR----~~i~~VpQd~~l-f~--gTIr----eNl~~~~~~--~--~deei~~al~~~~l~~~---i~~lp~gldt~vge~ 1145 (1252)
                      +|    +.|++|||||.- |+  -||.    |-+..-...  .  -.+...+.++.+++.+-   .+.-|          
T Consensus        82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP----------  151 (316)
T COG0444          82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP----------  151 (316)
T ss_pred             HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence            43    479999999952 22  2333    333221110  1  13467888888888753   33333          


Q ss_pred             CCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCC
Q 000856         1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDG 1222 (1252)
Q Consensus      1146 G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G 1222 (1252)
                       ..||||||||+.||-||+.+|++||.||||+|||..++++|.+.|+++.+  +.|+|+|||++..+. -||||+||.+|
T Consensus       152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG  230 (316)
T COG0444         152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG  230 (316)
T ss_pred             -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence             57999999999999999999999999999999999999999999999864  899999999999875 58999999999


Q ss_pred             EEEEecChhhhhcCCCchhHHHH
Q 000856         1223 RIVEQGSHSELVSRPDGAYSRLL 1245 (1252)
Q Consensus      1223 ~Ive~G~~~eLl~~~~g~y~~l~ 1245 (1252)
                      +|||.|+.++++.++...|.+.+
T Consensus       231 ~iVE~g~~~~i~~~P~HPYT~~L  253 (316)
T COG0444         231 RIVEEGPVEEIFKNPKHPYTRGL  253 (316)
T ss_pred             EEEEeCCHHHHhcCCCChHHHHH
Confidence            99999999999999888887543

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-39  Score=373.39  Aligned_cols=227  Identities=30%  Similarity=0.441  Sum_probs=184.8

Q ss_pred             cEEEEeEEEECCCCC-------CCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCH
Q 000856          364 NIEFKNVTFSYPSRP-------DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~-------~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~  436 (1252)
                      .|+++|++++|+...       ...+++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus         5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~   84 (327)
T PRK11308          5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP   84 (327)
T ss_pred             eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence            489999999996321       2468999999999999999999999999999999999999999999999999987764


Q ss_pred             H---HHhhhceEEccCC--CCchh-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHhhCCCCccc-cccCCCCCCCh
Q 000856          437 R---WLRDQIGLVNQEP--ALFAT-TILENILYGK---PEATMAEVEAAASAANAHSFITLLPNGYST-QVGERGVQLSG  506 (1252)
Q Consensus       437 ~---~~~~~i~~v~Q~~--~l~~~-tv~~ni~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g~~LSg  506 (1252)
                      .   .+|++|+||+|+|  .|.+. |+.+|+..+.   ......+..     ..+.+.++.+  |++. .....+.+|||
T Consensus        85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~p~~LSg  157 (327)
T PRK11308         85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERR-----EKALAMMAKV--GLRPEHYDRYPHMFSG  157 (327)
T ss_pred             HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHC--CCChHHhcCCCccCCH
Confidence            3   4667899999998  35543 9998886421   111111111     1122334443  4432 34667789999


Q ss_pred             HHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEec
Q 000856          507 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG  583 (1252)
Q Consensus       507 GqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g  583 (1252)
                      |||||++|||||+.+|++||+||||++||+.++..+.+.|.++.+  |.|+|+|||+++.+.. ||+|++|++|+|++.|
T Consensus       158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g  237 (327)
T PRK11308        158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG  237 (327)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence            999999999999999999999999999999999999999998853  8999999999999976 8999999999999999


Q ss_pred             ChHHHHhcc-cchHH
Q 000856          584 THEELIAKA-GAYAS  597 (1252)
Q Consensus       584 ~~~~l~~~~-~~~~~  597 (1252)
                      +.+++.++. ..|..
T Consensus       238 ~~~~~~~~p~hpyt~  252 (327)
T PRK11308        238 TKEQIFNNPRHPYTQ  252 (327)
T ss_pred             CHHHHhcCCCCHHHH
Confidence            999998753 34543

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-39  Score=363.80  Aligned_cols=219  Identities=26%  Similarity=0.401  Sum_probs=184.4

Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhh
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ  442 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~  442 (1252)
                      ..|+++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus         6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   82 (265)
T PRK10253          6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR   82 (265)
T ss_pred             cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence            46999999999974   358999999999999999999999999999999999999999999999999987777777788


Q ss_pred             ceEEccCCCCch-hcHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000856          443 IGLVNQEPALFA-TTILENILYGKPEA-----TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR  516 (1252)
Q Consensus       443 i~~v~Q~~~l~~-~tv~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lAR  516 (1252)
                      ++|++|++.++. .|++||+.++....     ...+..    ...+.+.++.+  |++......+.+||||||||++|||
T Consensus        83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lar  156 (265)
T PRK10253         83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKED----EEAVTKAMQAT--GITHLADQSVDTLSGGQRQRAWIAM  156 (265)
T ss_pred             eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHH----HHHHHHHHHHc--CCHHHhcCCcccCChHHHHHHHHHH
Confidence            999999998875 59999998752110     000000    01112233333  5555566778899999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          517 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       517 al~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      |++.+|+++||||||++||+.+++.+.+.|.++.+  ++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus       157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  233 (265)
T PRK10253        157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT  233 (265)
T ss_pred             HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence            99999999999999999999999999999998753  7899999999998866 89999999999999999988754

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-39  Score=365.30  Aligned_cols=220  Identities=25%  Similarity=0.423  Sum_probs=182.5

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccccC--CCH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~~  436 (1252)
                      .++++|++++|++   ..+|+|+||+|++||+++|+|+||||||||+++|+|+++     |++|+|.++|+++..  .+.
T Consensus        24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~  100 (271)
T PRK14238         24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV  100 (271)
T ss_pred             EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence            5999999999974   348999999999999999999999999999999999987     699999999998853  344


Q ss_pred             HHHhhhceEEccCCCCchhcHHHHHhcCCC--CCCHHH-HHHHHHHhcHHHHHhhC--CCCccccccCCCCCCChHHHHH
Q 000856          437 RWLRDQIGLVNQEPALFATTILENILYGKP--EATMAE-VEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQR  511 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~--~~g~~~~~~~~g~~LSgGqkqR  511 (1252)
                      ..++++++|++|++.+|..|++||+.++..  ....++ ....     +.+.++.+  ..++....++.+.+||||||||
T Consensus       101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr  175 (271)
T PRK14238        101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEI-----VEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR  175 (271)
T ss_pred             HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence            567788999999999998899999987531  111111 1111     11111111  1133445567888999999999


Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          512 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       512 v~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      ++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus       176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~  255 (271)
T PRK14238        176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFS  255 (271)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence            99999999999999999999999999999999999998778999999999999866 89999999999999999998865


Q ss_pred             c
Q 000856          591 K  591 (1252)
Q Consensus       591 ~  591 (1252)
                      .
T Consensus       256 ~  256 (271)
T PRK14238        256 N  256 (271)
T ss_pred             C
Confidence            4

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-39  Score=363.65  Aligned_cols=222  Identities=23%  Similarity=0.423  Sum_probs=185.4

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHH-hhh
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL-RDQ  442 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~  442 (1252)
                      .++++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (255)
T PRK11300          5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG   81 (255)
T ss_pred             eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence            4899999999963   358999999999999999999999999999999999999999999999999887765544 446


Q ss_pred             ceEEccCCCCchh-cHHHHHhcCCCCCC----------HHHH--HHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHH
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPEAT----------MAEV--EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK  509 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-tv~~ni~~~~~~~~----------~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqk  509 (1252)
                      ++|++|++.++.. |++||+.++.....          ....  ........+.+.++.+  |+....+..+.+||||||
T Consensus        82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~  159 (255)
T PRK11300         82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ  159 (255)
T ss_pred             eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence            9999999999876 99999997531100          0000  0000111223445555  777777888999999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChH
Q 000856          510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE  586 (1252)
Q Consensus       510 qRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~  586 (1252)
                      ||++||||++.+|++|||||||++||+.+++.+.+.|.++.+  |+|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus       160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~  239 (255)
T PRK11300        160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE  239 (255)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence            999999999999999999999999999999999999998753  7899999999999866 8999999999999999988


Q ss_pred             HHHh
Q 000856          587 ELIA  590 (1252)
Q Consensus       587 ~l~~  590 (1252)
                      ++..
T Consensus       240 ~~~~  243 (255)
T PRK11300        240 EIRN  243 (255)
T ss_pred             HHhh
Confidence            8754

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-39  Score=362.12  Aligned_cols=220  Identities=31%  Similarity=0.455  Sum_probs=181.1

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcc---cCC--CCcEEEECCccccCC--CH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF---YDP--NAGHVLLDNVDIKTL--QL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~---~~~--~~G~i~~~g~~~~~~--~~  436 (1252)
                      .++++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+   ++|  ++|+|.++|+++...  +.
T Consensus         3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   79 (250)
T PRK14245          3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV   79 (250)
T ss_pred             EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence            5899999999964   3589999999999999999999999999999999997   454  589999999998653  34


Q ss_pred             HHHhhhceEEccCCCCchhcHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHhhC--CCCccccccCCCCCCChHHHHH
Q 000856          437 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQR  511 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~g~~LSgGqkqR  511 (1252)
                      ..++++++|++|++.+++.|++||+.++....   ..++....     +.+.++.+  +..+.+..++.+.+||||||||
T Consensus        80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr  154 (250)
T PRK14245         80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQR-----VEETLKGAALWDEVKDKLKESAFALSGGQQQR  154 (250)
T ss_pred             HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHH-----HHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence            56778899999999999889999998753211   11111111     11222222  1112344567788999999999


Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          512 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       512 v~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      ++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus       155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~  234 (250)
T PRK14245        155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT  234 (250)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence            99999999999999999999999999999999999998778999999999999865 89999999999999999999865


Q ss_pred             c
Q 000856          591 K  591 (1252)
Q Consensus       591 ~  591 (1252)
                      .
T Consensus       235 ~  235 (250)
T PRK14245        235 N  235 (250)
T ss_pred             C
Confidence            4

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-39  Score=365.89  Aligned_cols=218  Identities=31%  Similarity=0.504  Sum_probs=181.6

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccC--CCHHHHhhh
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT--LQLRWLRDQ  442 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~~  442 (1252)
                      ++++|++++|++  ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..  .+...+++.
T Consensus         2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (275)
T PRK13639          2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT   79 (275)
T ss_pred             EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence            689999999963  2358999999999999999999999999999999999999999999999998852  233456788


Q ss_pred             ceEEccCC--CCchhcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000856          443 IGLVNQEP--ALFATTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM  518 (1252)
Q Consensus       443 i~~v~Q~~--~l~~~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal  518 (1252)
                      |+|++|++  .+++.|++||+.++...  ....+...     .+.+.++.+  |+.......+.+||||||||++||||+
T Consensus        80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral  152 (275)
T PRK13639         80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK-----RVKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGIL  152 (275)
T ss_pred             eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence            99999997  46778999999875321  11111111     112333333  555555667789999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          519 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       519 ~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +.+|+++||||||++||+.++..+.+.|.++. +|.|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus       153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~  227 (275)
T PRK13639        153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD  227 (275)
T ss_pred             hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence            99999999999999999999999999999885 48999999999999875 899999999999999999987653

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=8.5e-40  Score=355.53  Aligned_cols=205  Identities=33%  Similarity=0.520  Sum_probs=169.9

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHH---HHhh
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLRD  441 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~~  441 (1252)
                      ++++|++++|++  +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..   .+++
T Consensus         2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (214)
T TIGR02673         2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR   79 (214)
T ss_pred             EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence            689999999952  23589999999999999999999999999999999999999999999999998776543   4667


Q ss_pred             hceEEccCCCCch-hcHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000856          442 QIGLVNQEPALFA-TTILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM  518 (1252)
Q Consensus       442 ~i~~v~Q~~~l~~-~tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal  518 (1252)
                      .++|++|++.+|. .|++||+.++...  ........     .+.+.++.+  |+.........+||||||||++|||||
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al  152 (214)
T TIGR02673        80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQR-----RVGAALRQV--GLEHKADAFPEQLSGGEQQRVAIARAI  152 (214)
T ss_pred             heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence            8999999999886 5999999875211  11111111     112233333  444445556679999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCE
Q 000856          519 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQ  578 (1252)
Q Consensus       519 ~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~  578 (1252)
                      +.+|+++||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|+
T Consensus       153 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~  214 (214)
T TIGR02673       153 VNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR  214 (214)
T ss_pred             hCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence            99999999999999999999999999999875 48999999999999976 89999999985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-39  Score=359.94  Aligned_cols=215  Identities=27%  Similarity=0.458  Sum_probs=181.8

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccC------CCHHH
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT------LQLRW  438 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~------~~~~~  438 (1252)
                      ++++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..      .....
T Consensus         3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (242)
T PRK11124          3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE   79 (242)
T ss_pred             EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence            789999999964   358999999999999999999999999999999999999999999999998731      23356


Q ss_pred             HhhhceEEccCCCCchh-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 000856          439 LRDQIGLVNQEPALFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI  514 (1252)
Q Consensus       439 ~~~~i~~v~Q~~~l~~~-tv~~ni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~l  514 (1252)
                      ++++++|++|++.++.+ |++||+.++..   .....+..     ..+.+.++.+  |++...+..+.+||||||||++|
T Consensus        80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l  152 (242)
T PRK11124         80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAI  152 (242)
T ss_pred             HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence            67889999999998875 99999974311   11111111     1223445554  67667777888999999999999


Q ss_pred             HHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHH
Q 000856          515 ARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI  589 (1252)
Q Consensus       515 ARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~  589 (1252)
                      |||++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~  229 (242)
T PRK11124        153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFT  229 (242)
T ss_pred             HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhc
Confidence            999999999999999999999999999999999885 48999999999999965 8999999999999999988764

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-39  Score=361.02  Aligned_cols=202  Identities=30%  Similarity=0.474  Sum_probs=173.1

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      ++++|++++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...     +..++
T Consensus         2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~   73 (255)
T PRK11248          2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG   73 (255)
T ss_pred             EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence            789999999963   3599999999999999999999999999999999999999999999999998642     34689


Q ss_pred             EEccccccCc-ccHHHHhccCCC--CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPALFA-ASIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~lf~-gTIreNl~~~~~--~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      |+||++.+|. .|+++|+.++..  ...    ++++.++++..++.+....           ...+||||||||++||||
T Consensus        74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrl~lara  142 (255)
T PRK11248         74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQLSGGQRQRVGIARA  142 (255)
T ss_pred             EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------ChhhCCHHHHHHHHHHHH
Confidence            9999999886 699999986421  112    2346667777777554332           235799999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEe--CCEEEEecCh
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQ--DGRIVEQGSH 1230 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~--~G~Ive~G~~ 1230 (1252)
                      |+++|++|||||||++||+.+...+.+.|++..  .++|+|+|||+++.+.. ||+|++|+  +|+|++.++.
T Consensus       143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~  215 (255)
T PRK11248        143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL  215 (255)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence            999999999999999999999999999999873  38999999999998854 89999998  5999998764

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-39  Score=363.20  Aligned_cols=220  Identities=30%  Similarity=0.452  Sum_probs=183.5

Q ss_pred             cccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccccC--C
Q 000856          362 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--L  434 (1252)
Q Consensus       362 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~  434 (1252)
                      ...|+++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..  .
T Consensus        18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   94 (267)
T PRK14237         18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI   94 (267)
T ss_pred             CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence            346999999999963   458999999999999999999999999999999999997     589999999998854  3


Q ss_pred             CHHHHhhhceEEccCCCCchhcHHHHHhcCCCCC---CHH----HHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChH
Q 000856          435 QLRWLRDQIGLVNQEPALFATTILENILYGKPEA---TMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG  507 (1252)
Q Consensus       435 ~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgG  507 (1252)
                      +...+++.++|++|++.+|..|++||+.++....   ..+    ++.++++..++.       +++++..++.+.+||||
T Consensus        95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~i~~~~~~~~~~LS~G  167 (267)
T PRK14237         95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALW-------DQVKDDLHKSALTLSGG  167 (267)
T ss_pred             ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCC-------chhhhhhcCCcccCCHH
Confidence            3456678899999999999889999998753211   111    122222222221       12234567788899999


Q ss_pred             HHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChH
Q 000856          508 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE  586 (1252)
Q Consensus       508 qkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~  586 (1252)
                      ||||++||||++++|+++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus       168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~  247 (267)
T PRK14237        168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR  247 (267)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence            999999999999999999999999999999999999999998778999999999999865 8999999999999999999


Q ss_pred             HHHhc
Q 000856          587 ELIAK  591 (1252)
Q Consensus       587 ~l~~~  591 (1252)
                      ++...
T Consensus       248 ~~~~~  252 (267)
T PRK14237        248 NIFTN  252 (267)
T ss_pred             HHhcC
Confidence            88653

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=1e-39  Score=355.09  Aligned_cols=206  Identities=32%  Similarity=0.506  Sum_probs=171.6

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCH---HHHhh
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL---RWLRD  441 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~~  441 (1252)
                      ++++|++++|++.  ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.   ..+++
T Consensus         1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   78 (214)
T cd03292           1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR   78 (214)
T ss_pred             CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence            4689999999642  358999999999999999999999999999999999999999999999999876653   34677


Q ss_pred             hceEEccCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000856          442 QIGLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM  518 (1252)
Q Consensus       442 ~i~~v~Q~~~l~~~-tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal  518 (1252)
                      .++|++|++.+++. |++||+.++...  ...++..+     .+.+.++.+  |++........+||||||||++|||||
T Consensus        79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral  151 (214)
T cd03292          79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK-----RVPAALELV--GLSHKHRALPAELSGGEQQRVAIARAI  151 (214)
T ss_pred             heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence            89999999998875 999999875321  11111111     112333333  555555666779999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEE
Q 000856          519 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQV  579 (1252)
Q Consensus       519 ~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i  579 (1252)
                      +.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus       152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~  214 (214)
T cd03292         152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL  214 (214)
T ss_pred             HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999999874 58999999999999976 899999999974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=8.2e-40  Score=355.23  Aligned_cols=202  Identities=30%  Similarity=0.464  Sum_probs=166.3

Q ss_pred             EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhceE
Q 000856          366 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGL  445 (1252)
Q Consensus       366 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~  445 (1252)
                      +++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.     .++++++|
T Consensus         1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~   72 (213)
T cd03235           1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY   72 (213)
T ss_pred             CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence            36899999964   35899999999999999999999999999999999999999999999998764     35678999


Q ss_pred             EccCCCC---chhcHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 000856          446 VNQEPAL---FATTILENILYGKPEA------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIAR  516 (1252)
Q Consensus       446 v~Q~~~l---~~~tv~~ni~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lAR  516 (1252)
                      ++|++.+   ++.|++||+.++....      ..++..     ..+.+.++.+  |++........+||||||||++|||
T Consensus        73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~  145 (213)
T cd03235          73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK-----AKVDEALERV--GLSELADRQIGELSGGQQQRVLLAR  145 (213)
T ss_pred             eccccccccCCCCcHHHHHHhccccccccccCCCHHHH-----HHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHH
Confidence            9999876   4579999998764311      001111     1122333333  4554556677899999999999999


Q ss_pred             HhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEec
Q 000856          517 AMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG  583 (1252)
Q Consensus       517 al~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g  583 (1252)
                      ||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++++.. ||++++|++| +++.|
T Consensus       146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence            9999999999999999999999999999999875 58999999999999876 8999999886 55543

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=9e-40  Score=344.68  Aligned_cols=225  Identities=37%  Similarity=0.629  Sum_probs=197.0

Q ss_pred             cEEEEeEEEECCCCCC---------------------ccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCc
Q 000856         1009 EIELRHVDFAYPSRPD---------------------VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~---------------------~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G 1067 (1252)
                      .|+++||+.-+..++.                     ..-++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus         4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G   83 (386)
T COG4175           4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG   83 (386)
T ss_pred             eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence            5888888887754321                     1247999999999999999999999999999999999999999


Q ss_pred             eEEECCcccCCCCHHHHh----cccEEEccccccCc-ccHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCC
Q 000856         1068 KVMIDGKDIRRLNLKSLR----LKIGLVQQEPALFA-ASIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPN 1136 (1252)
Q Consensus      1068 ~I~idG~di~~~~~~~lR----~~i~~VpQd~~lf~-gTIreNl~~~~~--~~----~deei~~al~~~~l~~~i~~lp~ 1136 (1252)
                      +|++||.|+..++.++||    +++++|+|..-||+ .||.||..||..  ..    .++...++++.+||.+|-.+.| 
T Consensus        84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp-  162 (386)
T COG4175          84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-  162 (386)
T ss_pred             eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence            999999999999988764    57999999998884 699999999843  22    2445688899999999988877 


Q ss_pred             cCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhh-hcc
Q 000856         1137 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTI-RGV 1213 (1252)
Q Consensus      1137 gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti-~~~ 1213 (1252)
                                ..||||+|||+.|||||..+|+||++|||.|+|||--...+|+.|.++.+  .+|+++|||++++. +--
T Consensus       163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG  232 (386)
T COG4175         163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG  232 (386)
T ss_pred             ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence                      36999999999999999999999999999999999999999999987643  78999999999976 556


Q ss_pred             CEEEEEeCCEEEEecChhhhhcCCCchhHHH
Q 000856         1214 DCIGVVQDGRIVEQGSHSELVSRPDGAYSRL 1244 (1252)
Q Consensus      1214 DrI~vl~~G~Ive~G~~~eLl~~~~g~y~~l 1244 (1252)
                      |||..|++|+|++.|||+|++.+|..-|-+-
T Consensus       233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~~  263 (386)
T COG4175         233 DRIAIMKDGEIVQVGTPEEILLNPANDYVRD  263 (386)
T ss_pred             ceEEEecCCeEEEeCCHHHHHcCccHHHHHH
Confidence            9999999999999999999999887777543

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-39  Score=364.67  Aligned_cols=220  Identities=33%  Similarity=0.488  Sum_probs=183.1

Q ss_pred             cccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccccC--C
Q 000856          362 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--L  434 (1252)
Q Consensus       362 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~  434 (1252)
                      .+.++++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++..  .
T Consensus        23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~   99 (272)
T PRK14236         23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV   99 (272)
T ss_pred             CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence            346999999999964   3589999999999999999999999999999999999884     89999999998864  3


Q ss_pred             CHHHHhhhceEEccCCCCchhcHHHHHhcCCCCC---CHH----HHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChH
Q 000856          435 QLRWLRDQIGLVNQEPALFATTILENILYGKPEA---TMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGG  507 (1252)
Q Consensus       435 ~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgG  507 (1252)
                      +...+++.++|++|++.+|+.|++||+.++....   ..+    ++..+++..++.+       .+.+..++.+.+||||
T Consensus       100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G  172 (272)
T PRK14236        100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWD-------EVKDRLHENAFGLSGG  172 (272)
T ss_pred             CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCh-------hHHHHhhCCcccCCHH
Confidence            4556788999999999999889999998753211   111    1222222222211       1223557778899999


Q ss_pred             HHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChH
Q 000856          508 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE  586 (1252)
Q Consensus       508 qkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~  586 (1252)
                      ||||++|||||+++|+++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus       173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~  252 (272)
T PRK14236        173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD  252 (272)
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence            999999999999999999999999999999999999999998778999999999999865 8999999999999999998


Q ss_pred             HHHhc
Q 000856          587 ELIAK  591 (1252)
Q Consensus       587 ~l~~~  591 (1252)
                      ++...
T Consensus       253 ~~~~~  257 (272)
T PRK14236        253 TLFTS  257 (272)
T ss_pred             HHhcC
Confidence            87643

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=1.6e-39  Score=339.95  Aligned_cols=172  Identities=41%  Similarity=0.697  Sum_probs=160.7

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      ++++|++++|++. +..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++
T Consensus         1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (173)
T cd03246           1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG   79 (173)
T ss_pred             CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence            4789999999742 245899999999999999999999999999999999999999999999999998888778888999


Q ss_pred             EEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCE
Q 000856          445 LVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKI  524 (1252)
Q Consensus       445 ~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~i  524 (1252)
                      |++|++.+++.|++||+                                          ||||||||++||||++.+|++
T Consensus        80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~  117 (173)
T cd03246          80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI  117 (173)
T ss_pred             EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence            99999999988999997                                          999999999999999999999


Q ss_pred             EEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhccCEEEEEeCCEE
Q 000856          525 LLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQV  579 (1252)
Q Consensus       525 lllDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i  579 (1252)
                      +||||||++||+.+++.+.+.++++. +|+|+|++||+++.+..||++++|++|++
T Consensus       118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i  173 (173)
T cd03246         118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV  173 (173)
T ss_pred             EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence            99999999999999999999999875 48999999999999887999999999974

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=2.2e-39  Score=353.33  Aligned_cols=204  Identities=31%  Similarity=0.477  Sum_probs=176.1

Q ss_pred             EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHH---HHh
Q 000856         1010 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK---SLR 1085 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~---~lR 1085 (1252)
                      ++++|++++|++.. +.++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+..   ..|
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR   81 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence            78999999996321 24699999999999999999999999999999999999999999999999999876643   468


Q ss_pred             cccEEEccccccCc-ccHHHHhccCCC---CCC----HHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHH
Q 000856         1086 LKIGLVQQEPALFA-ASIFDNIAYGKE---GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 1157 (1252)
Q Consensus      1086 ~~i~~VpQd~~lf~-gTIreNl~~~~~---~~~----deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrl 1157 (1252)
                      +.++|+||++.+|. .|+.+|+.++..   ..+    ++.+.++++..++.++....|           ..||+|||||+
T Consensus        82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv  150 (220)
T TIGR02982        82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV  150 (220)
T ss_pred             hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence            89999999999987 699999986421   122    234566777777766555443           47999999999


Q ss_pred             HHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhccCEEEEEeCCEE
Q 000856         1158 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRI 1224 (1252)
Q Consensus      1158 aLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~~DrI~vl~~G~I 1224 (1252)
                      +||||++++|++|||||||++||+++...+.+.|++..+  ++|+|+|||+++....||+|++|++|++
T Consensus       151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~  219 (220)
T TIGR02982       151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL  219 (220)
T ss_pred             HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence            999999999999999999999999999999999998763  7999999999998778999999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-39  Score=372.77  Aligned_cols=227  Identities=25%  Similarity=0.358  Sum_probs=180.7

Q ss_pred             cEEEEeEEEECCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC----CCCcEEEECCccccCCCHHH
Q 000856          364 NIEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD----PNAGHVLLDNVDIKTLQLRW  438 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~----~~~G~i~~~g~~~~~~~~~~  438 (1252)
                      .++++|++++|+.... ..+|+|+||+|++||+++|+|+||||||||+++|+|+++    |++|+|.++|+++...+.+.
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~   82 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE   82 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence            3799999999975322 458999999999999999999999999999999999997    48999999999998877655


Q ss_pred             Hh----hhceEEccCCC--Cchh-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHhhCCCCcc---ccccCCCCCCC
Q 000856          439 LR----DQIGLVNQEPA--LFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYS---TQVGERGVQLS  505 (1252)
Q Consensus       439 ~~----~~i~~v~Q~~~--l~~~-tv~~ni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~g~~LS  505 (1252)
                      ++    +.|+||+|+|.  +.+. |+.+++.....   .....+..     ..+.+.++.+  |++   ...++.+.+||
T Consensus        83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~-----~~~~~~L~~~--gL~~~~~~l~~~p~~LS  155 (326)
T PRK11022         83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRR-----QRAIDLLNQV--GIPDPASRLDVYPHQLS  155 (326)
T ss_pred             HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChHHHHhCCchhCC
Confidence            43    36999999984  4432 66665542110   11111111     1112333333  443   34567888999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEe
Q 000856          506 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVET  582 (1252)
Q Consensus       506 gGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~  582 (1252)
                      |||||||+|||||+.+|++||+||||++||+.++..+.+.|+++.  .|.|+|+|||+++.+.. ||||++|.+|+|++.
T Consensus       156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~  235 (326)
T PRK11022        156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET  235 (326)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence            999999999999999999999999999999999999999999985  38999999999999965 899999999999999


Q ss_pred             cChHHHHhcc-cchHH
Q 000856          583 GTHEELIAKA-GAYAS  597 (1252)
Q Consensus       583 g~~~~l~~~~-~~~~~  597 (1252)
                      |+.+++.++. ..|..
T Consensus       236 g~~~~~~~~p~hpyt~  251 (326)
T PRK11022        236 GKAHDIFRAPRHPYTQ  251 (326)
T ss_pred             CCHHHHhhCCCChHHH
Confidence            9999998653 34543

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.5e-39  Score=362.96  Aligned_cols=221  Identities=29%  Similarity=0.422  Sum_probs=183.4

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      ++++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus         2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   78 (256)
T TIGR03873         2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA   78 (256)
T ss_pred             ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence            689999999964   35999999999999999999999999999999999999999999999999998887777777899


Q ss_pred             EEccCCCCc-hhcHHHHHhcCCCCCCHH-HHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000856          445 LVNQEPALF-ATTILENILYGKPEATMA-EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP  522 (1252)
Q Consensus       445 ~v~Q~~~l~-~~tv~~ni~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~  522 (1252)
                      |++|++.++ ..|++||+.++....... ..........+.+.+..+  |+.......+.+||||||||++||||++.+|
T Consensus        79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p  156 (256)
T TIGR03873        79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP  156 (256)
T ss_pred             EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            999998654 569999998763211000 000000011223344444  5555566778899999999999999999999


Q ss_pred             CEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          523 KILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       523 ~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      +++||||||++||+.+.+.+.+.|+++. ++.|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus       157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  226 (256)
T TIGR03873       157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT  226 (256)
T ss_pred             CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence            9999999999999999999999999885 47899999999999965 89999999999999999988754

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-39  Score=361.74  Aligned_cols=218  Identities=29%  Similarity=0.447  Sum_probs=182.4

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccccC--CCH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~~  436 (1252)
                      .|+++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..  .+.
T Consensus        10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   86 (264)
T PRK14243         10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP   86 (264)
T ss_pred             EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence            5899999999964   358999999999999999999999999999999999986     489999999998853  345


Q ss_pred             HHHhhhceEEccCCCCchhcHHHHHhcCCCCC--C---HHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHH
Q 000856          437 RWLRDQIGLVNQEPALFATTILENILYGKPEA--T---MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQR  511 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqR  511 (1252)
                      ..++++++|++|++.+++.|++||+.++....  .   .++...+++.+++.+.+       ....++.+.+||||||||
T Consensus        87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr  159 (264)
T PRK14243         87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV-------KDKLKQSGLSLSGGQQQR  159 (264)
T ss_pred             HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH-------HHHhcCCcccCCHHHHHH
Confidence            66778899999999998889999998764211  1   11222233333332222       223466788999999999


Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEe---------CCEEEE
Q 000856          512 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQ---------QGQVVE  581 (1252)
Q Consensus       512 v~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~---------~G~i~~  581 (1252)
                      ++|||||+.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||+|++|+         +|++++
T Consensus       160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~  239 (264)
T PRK14243        160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE  239 (264)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence            99999999999999999999999999999999999998777899999999999866 89999998         899999


Q ss_pred             ecChHHHHhc
Q 000856          582 TGTHEELIAK  591 (1252)
Q Consensus       582 ~g~~~~l~~~  591 (1252)
                      .|+++++.+.
T Consensus       240 ~~~~~~~~~~  249 (264)
T PRK14243        240 FDRTEKIFNS  249 (264)
T ss_pred             eCCHHHHHhC
Confidence            9999998654

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=8.5e-40  Score=354.26  Aligned_cols=205  Identities=25%  Similarity=0.481  Sum_probs=173.1

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      ++++|++++|++   ..+++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..    ..+++++
T Consensus         1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~   73 (210)
T cd03269           1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG   73 (210)
T ss_pred             CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence            478999999963   358999999999999999999999999999999999999999999999988753    4567899


Q ss_pred             EEccCCCCchh-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          445 LVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       445 ~v~Q~~~l~~~-tv~~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      |++|++.++.. |++||+.+....  ....+..     ..+.+.++.+  |++........+||||||||++||||++.+
T Consensus        74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~  146 (210)
T cd03269          74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD  146 (210)
T ss_pred             EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence            99999998875 999999864211  1111111     1223445555  666666777889999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEec
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG  583 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g  583 (1252)
                      |+++||||||++||+.+++.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~  210 (210)
T cd03269         147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG  210 (210)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence            99999999999999999999999998875 47899999999999866 8999999999998754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.7e-39  Score=362.30  Aligned_cols=220  Identities=29%  Similarity=0.437  Sum_probs=180.3

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC--C---CCcEEEECCccccCC--CH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--P---NAGHVLLDNVDIKTL--QL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~--~---~~G~i~~~g~~~~~~--~~  436 (1252)
                      .++++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|+++...  +.
T Consensus         5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~   81 (252)
T PRK14239          5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT   81 (252)
T ss_pred             eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence            4899999999974   348999999999999999999999999999999999853  6   599999999988643  34


Q ss_pred             HHHhhhceEEccCCCCchhcHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHhhC--CCCccccccCCCCCCChHHHHH
Q 000856          437 RWLRDQIGLVNQEPALFATTILENILYGKPE---ATMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQR  511 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~g~~LSgGqkqR  511 (1252)
                      ..+++.++|++|++.+|+.|++||+.++...   ...+.....     +.+.++.+  ..++.+..++.+.+||||||||
T Consensus        82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr  156 (252)
T PRK14239         82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEA-----VEKSLKGASIWDEVKDRLHDSALGLSGGQQQR  156 (252)
T ss_pred             HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHH-----HHHHHHHcCCchhHHHHHhcCcccCCHHHHHH
Confidence            4567789999999999989999999865211   111111111     11222222  1112344567788999999999


Q ss_pred             HHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHh
Q 000856          512 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       512 v~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      ++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus       157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~  236 (252)
T PRK14239        157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM  236 (252)
T ss_pred             HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            99999999999999999999999999999999999988767999999999998865 89999999999999999998865


Q ss_pred             c
Q 000856          591 K  591 (1252)
Q Consensus       591 ~  591 (1252)
                      .
T Consensus       237 ~  237 (252)
T PRK14239        237 N  237 (252)
T ss_pred             C
Confidence            4

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=3.6e-39  Score=351.37  Aligned_cols=210  Identities=32%  Similarity=0.480  Sum_probs=183.5

Q ss_pred             EEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCH----HHHhh
Q 000856          366 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQL----RWLRD  441 (1252)
Q Consensus       366 ~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~~~  441 (1252)
                      .+.|++|+|+..  ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.    ...|+
T Consensus         2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   79 (218)
T cd03290           2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY   79 (218)
T ss_pred             eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence            578999999743  458999999999999999999999999999999999999999999999998865432    23456


Q ss_pred             hceEEccCCCCchhcHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          442 QIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       442 ~i~~v~Q~~~l~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      .++|++|++.+++.|++||+.++.+ ...++...+++..++.+.+..+|.|+++..+..+.+||||||||++||||++.+
T Consensus        80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~  158 (218)
T cd03290          80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN  158 (218)
T ss_pred             eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence            7999999999998899999998653 234455667777777788888899999999999999999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHH--HHHHhc-CCCeEEEEccCccchhccCEEEEEeCCE
Q 000856          522 PKILLLDEATSALDAGSESIVQE--ALDRLM-VGRTTVVVAHRLSTIRNVDTVAVIQQGQ  578 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~--~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~  578 (1252)
                      |+++||||||++||+.+++.+.+  .++.+. .+.|+|++||+++.+..||++++|++|.
T Consensus       159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~  218 (218)
T cd03290         159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS  218 (218)
T ss_pred             CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence            99999999999999999998887  555554 3799999999999998899999999873

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.7e-40  Score=323.81  Aligned_cols=213  Identities=31%  Similarity=0.539  Sum_probs=185.0

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      +++.+++.+|++  ...+++||||+++.||++||.|+|||||||+++.|..|+.|++|.|++||+|+.. ++...|++||
T Consensus         2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG   78 (245)
T COG4555           2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG   78 (245)
T ss_pred             eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence            678999999974  3358999999999999999999999999999999999999999999999999987 4567899999


Q ss_pred             EEccccccC-cccHHHHhccCCC--CC----CHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHH
Q 000856         1090 LVQQEPALF-AASIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~VpQd~~lf-~gTIreNl~~~~~--~~----~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARA 1162 (1252)
                      +++-+.-++ ..|.||||.|+..  +.    .+.++.+.-+..++.+...       ..+|    +||-|+|||++||||
T Consensus        79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-------rRv~----~~S~G~kqkV~iARA  147 (245)
T COG4555          79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-------RRVG----EFSTGMKQKVAIARA  147 (245)
T ss_pred             eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-------HHHh----hhchhhHHHHHHHHH
Confidence            999776676 4699999987521  12    2344555556666665543       4454    599999999999999


Q ss_pred             HccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhhhhcC
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~-~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~eLl~~ 1236 (1252)
                      |+++|+|++||||||+||.-+...+++.+.+..+ |++||+-||.++.++ -||||+++.+|+++..|+++++.++
T Consensus       148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r  223 (245)
T COG4555         148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR  223 (245)
T ss_pred             HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence            9999999999999999999999999999999875 999999999999997 6999999999999999999998765

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=2.2e-39  Score=354.12  Aligned_cols=208  Identities=27%  Similarity=0.454  Sum_probs=173.0

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHH---HHhh
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WLRD  441 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~~~  441 (1252)
                      |+++|++++|++  +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..   .+++
T Consensus         2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   79 (222)
T PRK10908          2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR   79 (222)
T ss_pred             EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence            689999999942  23589999999999999999999999999999999999999999999999998776543   3677


Q ss_pred             hceEEccCCCCc-hhcHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000856          442 QIGLVNQEPALF-ATTILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM  518 (1252)
Q Consensus       442 ~i~~v~Q~~~l~-~~tv~~ni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal  518 (1252)
                      .++|++|++.++ +.|++||+.++..  ....++....     +.+.++.+  |+.....+...+||||||||++||||+
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral  152 (222)
T PRK10908         80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR-----VSAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAV  152 (222)
T ss_pred             heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence            899999999875 5699999987531  1222222111     11233333  454455667789999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEE
Q 000856          519 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVE  581 (1252)
Q Consensus       519 ~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~  581 (1252)
                      +.+|+++||||||++||+.+++.+.+.|.++. ++.|+|++||+++++.. ||+|++|++|+++.
T Consensus       153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~  217 (222)
T PRK10908        153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG  217 (222)
T ss_pred             HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence            99999999999999999999999999999875 47999999999999977 79999999999864

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=2.6e-39  Score=355.16  Aligned_cols=212  Identities=28%  Similarity=0.406  Sum_probs=175.0

Q ss_pred             cEEEEeEEEECCCCCC-CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHH---H
Q 000856          364 NIEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW---L  439 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~  439 (1252)
                      .|+++|++++|++... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...   .
T Consensus         6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~   85 (228)
T PRK10584          6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL   85 (228)
T ss_pred             eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence            5899999999974221 25899999999999999999999999999999999999999999999999988766543   2


Q ss_pred             -hhhceEEccCCCCchh-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 000856          440 -RDQIGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA  515 (1252)
Q Consensus       440 -~~~i~~v~Q~~~l~~~-tv~~ni~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lA  515 (1252)
                       ++.++|++|++.++.. |++||+.++..  .....+..     ..+.+.++.+  |+.........+||||||||++||
T Consensus        86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la  158 (228)
T PRK10584         86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSR-----NGAKALLEQL--GLGKRLDHLPAQLSGGEQQRVALA  158 (228)
T ss_pred             HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHH
Confidence             3579999999998875 99999986421  11111111     1122334444  555555666789999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-C-CCeEEEEccCccchhccCEEEEEeCCEEEEe
Q 000856          516 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRNVDTVAVIQQGQVVET  582 (1252)
Q Consensus       516 Ral~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~  582 (1252)
                      |||+.+|+++||||||++||+.+++.+.+.|+++. + |+|+|++||+++.+..||++++|++|++++.
T Consensus       159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~  227 (228)
T PRK10584        159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE  227 (228)
T ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence            99999999999999999999999999999999874 3 7899999999999877999999999999764

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-39  Score=361.02  Aligned_cols=218  Identities=28%  Similarity=0.464  Sum_probs=182.0

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccccCC--CH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTL--QL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~--~~  436 (1252)
                      .|+++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+.+|     ++|+|.++|+++...  +.
T Consensus         6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   82 (253)
T PRK14261          6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV   82 (253)
T ss_pred             eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence            4899999999963   3589999999999999999999999999999999999763     489999999998765  34


Q ss_pred             HHHhhhceEEccCCCCchhcHHHHHhcCCCCC---CHH----HHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHH
Q 000856          437 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK  509 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqk  509 (1252)
                      ...++.++|++|++.+|+.|++||+.++....   ...    ++..+++..+       +..++.+..++.+.+||||||
T Consensus        83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~l~~~~~~~~~~LS~G~~  155 (253)
T PRK14261         83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAA-------LWDEVKDRLHDSALSLSGGQQ  155 (253)
T ss_pred             hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhc-------CchhhHHHhhcChhhCCHHHH
Confidence            56677899999999999889999998863211   111    1122222221       112233456778889999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       510 qRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      ||++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~  235 (253)
T PRK14261        156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI  235 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence            9999999999999999999999999999999999999998777999999999999965 899999999999999999887


Q ss_pred             Hhc
Q 000856          589 IAK  591 (1252)
Q Consensus       589 ~~~  591 (1252)
                      ...
T Consensus       236 ~~~  238 (253)
T PRK14261        236 FEN  238 (253)
T ss_pred             HhC
Confidence            643

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=1.3e-39  Score=356.74  Aligned_cols=205  Identities=26%  Similarity=0.435  Sum_probs=169.1

Q ss_pred             EEEEeEEEECCCCC-CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCC---CCCceEEECCcccCCCCHHHHh
Q 000856         1010 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD---PTAGKVMIDGKDIRRLNLKSLR 1085 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~-~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~---p~~G~I~idG~di~~~~~~~lR 1085 (1252)
                      ++|+||+++|++.. .+++|+|+||+|++||++||+|+||||||||+++|+|+++   |++|+|.+||.++.   ...+|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~   80 (226)
T cd03234           4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ   80 (226)
T ss_pred             ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence            67999999997532 2579999999999999999999999999999999999999   99999999999875   34678


Q ss_pred             cccEEEccccccCcc-cHHHHhccCCC----CCCHHH-----HHH-HHHHcCchhhHhhCCCcCCCccCCCCCCCChhHH
Q 000856         1086 LKIGLVQQEPALFAA-SIFDNIAYGKE----GATEAE-----VVE-AARAANVHGFVSALPNAYKTPVGERGVQLSGGQK 1154 (1252)
Q Consensus      1086 ~~i~~VpQd~~lf~g-TIreNl~~~~~----~~~dee-----i~~-al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQr 1154 (1252)
                      ++++|+||++.+|.+ |++||+.++..    ....++     +.+ .++..++.           .........||||||
T Consensus        81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~  149 (226)
T cd03234          81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT-----------RIGGNLVKGISGGER  149 (226)
T ss_pred             ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcch-----------hhhcccccCcCHHHH
Confidence            899999999999987 99999986421    111111     111 23333322           222234467999999


Q ss_pred             HHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCc-hhh-hccCEEEEEeCCEEEEec
Q 000856         1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRL-STI-RGVDCIGVVQDGRIVEQG 1228 (1252)
Q Consensus      1155 QrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl-~ti-~~~DrI~vl~~G~Ive~G 1228 (1252)
                      ||++|||||+++|++|||||||++||+.+...+.+.|++.. +++|+|++||++ +.+ ..||+|++|++|++++.|
T Consensus       150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g  226 (226)
T cd03234         150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG  226 (226)
T ss_pred             HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence            99999999999999999999999999999999999999875 478999999998 455 568999999999999875

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=2.9e-39  Score=362.20  Aligned_cols=223  Identities=27%  Similarity=0.444  Sum_probs=182.9

Q ss_pred             EEEEeEEEECCCC------CCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCH--
Q 000856         1010 IELRHVDFAYPSR------PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL-- 1081 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~------~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~-- 1081 (1252)
                      |+++||+++|+..      .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.  
T Consensus         4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~   83 (268)
T PRK10419          4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ   83 (268)
T ss_pred             EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence            8899999999631      12469999999999999999999999999999999999999999999999999987765  


Q ss_pred             -HHHhcccEEEccccc--cC-cccHHHHhccCCC---CCCH----HHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCC
Q 000856         1082 -KSLRLKIGLVQQEPA--LF-AASIFDNIAYGKE---GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLS 1150 (1252)
Q Consensus      1082 -~~lR~~i~~VpQd~~--lf-~gTIreNl~~~~~---~~~d----eei~~al~~~~l~~~i~~lp~gldt~vge~G~~LS 1150 (1252)
                       ..+|+.++|+||++.  ++ ..|+++|+.+...   ..+.    +.+.++++..++..          .........||
T Consensus        84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS  153 (268)
T PRK10419         84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD----------SVLDKRPPQLS  153 (268)
T ss_pred             HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh----------hHhhCCCccCC
Confidence             346889999999983  33 4799999864211   1111    22344444444321          12334456799


Q ss_pred             hhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhc-cCEEEEEeCCEEEEe
Q 000856         1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQ 1227 (1252)
Q Consensus      1151 gGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive~ 1227 (1252)
                      ||||||++|||||+++|++|||||||++||+.+...+.+.|++..+  ++|+|++||+++.+.. ||+|++|++|++++.
T Consensus       154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~  233 (268)
T PRK10419        154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET  233 (268)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence            9999999999999999999999999999999999999999998753  7899999999999974 899999999999999


Q ss_pred             cChhhhhcCCCchhHH
Q 000856         1228 GSHSELVSRPDGAYSR 1243 (1252)
Q Consensus      1228 G~~~eLl~~~~g~y~~ 1243 (1252)
                      |+++++.+. ++.|..
T Consensus       234 g~~~~~~~~-~~~~~~  248 (268)
T PRK10419        234 QPVGDKLTF-SSPAGR  248 (268)
T ss_pred             CChhhccCC-CCHHHH
Confidence            999999865 555543

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-39  Score=360.37  Aligned_cols=218  Identities=32%  Similarity=0.477  Sum_probs=180.5

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccccC--CCH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~~  436 (1252)
                      .|+++|++|+|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++..  .+.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~   80 (251)
T PRK14251          4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL   80 (251)
T ss_pred             eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence            4899999999964   358999999999999999999999999999999999997     489999999998854  334


Q ss_pred             HHHhhhceEEccCCCCchhcHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHhhCCCCc----cccccCCCCCCChHHH
Q 000856          437 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TMAEVEAAASAANAHSFITLLPNGY----STQVGERGVQLSGGQK  509 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~g~~LSgGqk  509 (1252)
                      ..+++.++|++|++.+|+.|++||+.++....   ..+.....     +.+.++.+  |+    ....++.+.+||||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~  153 (251)
T PRK14251         81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQR-----VEESLKQA--AIWKETKDNLDRNAQAFSGGQQ  153 (251)
T ss_pred             HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHH-----HHHHHHHc--CCCcchHHHhccChhhCCHHHH
Confidence            55677899999999999889999998753211   11111111     11222222  22    1234567789999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       510 qRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      ||++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  233 (251)
T PRK14251        154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM  233 (251)
T ss_pred             HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999998778999999999999866 899999999999999999888


Q ss_pred             Hhc
Q 000856          589 IAK  591 (1252)
Q Consensus       589 ~~~  591 (1252)
                      ...
T Consensus       234 ~~~  236 (251)
T PRK14251        234 FIA  236 (251)
T ss_pred             HhC
Confidence            643

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=9.2e-40  Score=313.21  Aligned_cols=193  Identities=30%  Similarity=0.512  Sum_probs=172.6

Q ss_pred             CccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccEEEccccccCcccHH
Q 000856         1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF 1103 (1252)
Q Consensus      1024 ~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~VpQd~~lf~gTIr 1103 (1252)
                      +.++|+|+||++.+||.++|.||||||||||++.++-+..|++|++++.|.|++.++++.+|++++||-|.|.||.+||.
T Consensus        15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe   94 (223)
T COG4619          15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE   94 (223)
T ss_pred             CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCC----CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCEEEEeccCCCC
Q 000856         1104 DNIAYGK----EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 1179 (1252)
Q Consensus      1104 eNl~~~~----~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ILiLDEpTS~L 1179 (1252)
                      ||+-|.-    ...+.+...+.++++++.+.+          +..+..+||||||||+||+|-|.--|+||+|||+||+|
T Consensus        95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~~----------L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL  164 (223)
T COG4619          95 DNLIFPWQIRNRRPDRAAALDLLARFALPDSI----------LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL  164 (223)
T ss_pred             hccccchHHhccCCChHHHHHHHHHcCCchhh----------hcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence            9998752    223445556777777776554          23345679999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHc--CCCeEEEEecCchh-hhccCEEEEEeCCEEEE
Q 000856         1180 DAESECVLQEALERLM--RGRTTVLVAHRLST-IRGVDCIGVVQDGRIVE 1226 (1252)
Q Consensus      1180 D~~te~~i~~~l~~~~--~~~TvI~IaHrl~t-i~~~DrI~vl~~G~Ive 1226 (1252)
                      |+.+.+.|.+.|.+++  ++..++.|||+.+. ++.+|+++.+..|++-+
T Consensus       165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~  214 (223)
T COG4619         165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE  214 (223)
T ss_pred             ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence            9999999999999887  46799999999987 78999999999998643

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-39  Score=374.72  Aligned_cols=211  Identities=30%  Similarity=0.480  Sum_probs=179.4

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCC----CHHHHh
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL----QLRWLR  440 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~----~~~~~~  440 (1252)
                      |++ |++++|++.    .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...    +....+
T Consensus         2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   75 (352)
T PRK11144          2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK   75 (352)
T ss_pred             eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence            566 999999632    23 89999999999999999999999999999999999999999999988643    233456


Q ss_pred             hhceEEccCCCCchh-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 000856          441 DQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       441 ~~i~~v~Q~~~l~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~  519 (1252)
                      ++++|++|++.+|+. |++||+.++......+++.         +.++.+  |++....+.+.+||||||||++|||||+
T Consensus        76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~LSgGq~qRvalaraL~  144 (352)
T PRK11144         76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFD---------KIVALL--GIEPLLDRYPGSLSGGEKQRVAIGRALL  144 (352)
T ss_pred             CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHH---------HHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence            789999999999975 9999999875322222222         333333  5665667778899999999999999999


Q ss_pred             cCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhcc
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       520 ~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      .+|+++||||||++||+.+++.+.+.|+++.+  ++|+|+|||+++++.. ||+|++|++|++++.|+++++..+.
T Consensus       145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p  220 (352)
T PRK11144        145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS  220 (352)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence            99999999999999999999999999998753  7899999999998866 8999999999999999999997653

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=1.7e-39  Score=372.06  Aligned_cols=230  Identities=25%  Similarity=0.409  Sum_probs=183.1

Q ss_pred             cEEEEeEEEECCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC---CcEEEECCccccCCCHHHH
Q 000856          364 NIEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN---AGHVLLDNVDIKTLQLRWL  439 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~  439 (1252)
                      .++++|++++|+.. ....+++|+||+|++||+++|+|+||||||||+++|+|+++|+   +|+|.++|+++..++...+
T Consensus        12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~   91 (330)
T PRK09473         12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL   91 (330)
T ss_pred             eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence            58999999999642 2346899999999999999999999999999999999999996   9999999999988876654


Q ss_pred             h----hhceEEccCC--CCchh-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHH
Q 000856          440 R----DQIGLVNQEP--ALFAT-TILENILYGK---PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK  509 (1252)
Q Consensus       440 ~----~~i~~v~Q~~--~l~~~-tv~~ni~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqk  509 (1252)
                      +    +.|+||+|+|  .+++. |+.+|+....   ...+..+....  ...+.+.+ .++++. ..++..+.+||||||
T Consensus        92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~--~~~~L~~v-gL~~~~-~~~~~~p~~LSgG~~  167 (330)
T PRK09473         92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEE--SVRMLDAV-KMPEAR-KRMKMYPHEFSGGMR  167 (330)
T ss_pred             HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHH--HHHHHHHc-CCCChH-HHhcCCcccCCHHHH
Confidence            3    4799999998  45543 7888775321   11122221111  11111221 223222 235778899999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecChH
Q 000856          510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE  586 (1252)
Q Consensus       510 qRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~  586 (1252)
                      |||+|||||+.+|++||+||||++||+.++..+.+.|+++.+  |.|+|+||||++.+.. ||+|++|++|+|++.|+.+
T Consensus       168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~  247 (330)
T PRK09473        168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNAR  247 (330)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence            999999999999999999999999999999999999998853  8999999999999975 8999999999999999999


Q ss_pred             HHHhcc-cchHH
Q 000856          587 ELIAKA-GAYAS  597 (1252)
Q Consensus       587 ~l~~~~-~~~~~  597 (1252)
                      ++.+.. ..|..
T Consensus       248 ~i~~~p~~pyt~  259 (330)
T PRK09473        248 DVFYQPSHPYSI  259 (330)
T ss_pred             HHHhCCCCHHHH
Confidence            998753 34544

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-39  Score=359.69  Aligned_cols=217  Identities=29%  Similarity=0.480  Sum_probs=181.3

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCcccc-CCCHH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIK-TLQLR  437 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~-~~~~~  437 (1252)
                      .++++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++. ..+..
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~   79 (249)
T PRK14253          3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA   79 (249)
T ss_pred             eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence            4789999999973   3589999999999999999999999999999999999986     5999999999885 34556


Q ss_pred             HHhhhceEEccCCCCchhcHHHHHhcCCCC--CC-HHH----HHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHH
Q 000856          438 WLRDQIGLVNQEPALFATTILENILYGKPE--AT-MAE----VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ  510 (1252)
Q Consensus       438 ~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~--~~-~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkq  510 (1252)
                      .+++.++|++|++.+|..|++||+.++...  .. .+.    +..+++..++.       +++.+..++.+.+|||||||
T Consensus        80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~LS~G~~q  152 (249)
T PRK14253         80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALW-------DEVKDRLKSHAFGLSGGQQQ  152 (249)
T ss_pred             HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCc-------hhhhHHhhcCcccCCHHHHH
Confidence            778889999999999989999999875321  11 111    11222222221       12234456778899999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHH
Q 000856          511 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI  589 (1252)
Q Consensus       511 Rv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~  589 (1252)
                      |++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus       153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~  232 (249)
T PRK14253        153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF  232 (249)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999998777999999999999876 8999999999999999988775


Q ss_pred             h
Q 000856          590 A  590 (1252)
Q Consensus       590 ~  590 (1252)
                      .
T Consensus       233 ~  233 (249)
T PRK14253        233 S  233 (249)
T ss_pred             c
Confidence            4

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=1.2e-39  Score=354.18  Aligned_cols=205  Identities=35%  Similarity=0.561  Sum_probs=172.9

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccC--CCHHHHhhh
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKT--LQLRWLRDQ  442 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~~  442 (1252)
                      ++++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..  .+...++++
T Consensus         1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   77 (213)
T cd03262           1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK   77 (213)
T ss_pred             CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence            478999999964   358999999999999999999999999999999999999999999999998853  344566788


Q ss_pred             ceEEccCCCCch-hcHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 000856          443 IGLVNQEPALFA-TTILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM  518 (1252)
Q Consensus       443 i~~v~Q~~~l~~-~tv~~ni~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal  518 (1252)
                      ++|++|++.++. .|++||+.++..   ....++...     .+.+.++.+  |++........+||||||||++||||+
T Consensus        78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al  150 (213)
T cd03262          78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL  150 (213)
T ss_pred             ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence            999999999886 599999987531   111211111     123344444  666667778889999999999999999


Q ss_pred             ccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEE
Q 000856          519 LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQV  579 (1252)
Q Consensus       519 ~~~~~illlDEpts~LD~~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i  579 (1252)
                      +.+|+++||||||++||+.+++.+.+.|+++. .|+|+|++||+++.+.. ||+|++|++|++
T Consensus       151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i  213 (213)
T cd03262         151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI  213 (213)
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence            99999999999999999999999999999885 47999999999999976 899999999974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-39  Score=359.77  Aligned_cols=220  Identities=30%  Similarity=0.505  Sum_probs=181.0

Q ss_pred             cccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC--C---CCcEEEECCccccCC--
Q 000856          362 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD--P---NAGHVLLDNVDIKTL--  434 (1252)
Q Consensus       362 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~--~---~~G~i~~~g~~~~~~--  434 (1252)
                      ++.|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++  |   ++|+|.++|+++...  
T Consensus         2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~   78 (252)
T PRK14256          2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV   78 (252)
T ss_pred             CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence            356899999999973   358999999999999999999999999999999999986  4   689999999988643  


Q ss_pred             CHHHHhhhceEEccCCCCchh-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHhhCCCCcc----ccccCCCCCCCh
Q 000856          435 QLRWLRDQIGLVNQEPALFAT-TILENILYGKPE---ATMAEVEAAASAANAHSFITLLPNGYS----TQVGERGVQLSG  506 (1252)
Q Consensus       435 ~~~~~~~~i~~v~Q~~~l~~~-tv~~ni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~g~~LSg  506 (1252)
                      +...+++.++|++|++.++.. |++||+.++...   ....+....     +.+.++.+  |++    ...+..+.+|||
T Consensus        79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~~~~LS~  151 (252)
T PRK14256         79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEI-----VESSLKRV--ALWDEVKDRLKSNAMELSG  151 (252)
T ss_pred             ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHH-----HHHHHHHc--CCchhhhHHhhCCcCcCCH
Confidence            345677889999999998874 999999865211   111111111     11222222  222    234567889999


Q ss_pred             HHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecCh
Q 000856          507 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTH  585 (1252)
Q Consensus       507 GqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~  585 (1252)
                      |||||++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus       152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~  231 (252)
T PRK14256        152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGET  231 (252)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence            9999999999999999999999999999999999999999998777899999999999865 899999999999999999


Q ss_pred             HHHHhc
Q 000856          586 EELIAK  591 (1252)
Q Consensus       586 ~~l~~~  591 (1252)
                      +++...
T Consensus       232 ~~~~~~  237 (252)
T PRK14256        232 KKIFTT  237 (252)
T ss_pred             HHHHhC
Confidence            988654

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.5e-39  Score=370.64  Aligned_cols=204  Identities=24%  Similarity=0.404  Sum_probs=173.0

Q ss_pred             CccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhceEEccCCCCchh-cHH
Q 000856          380 VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TIL  458 (1252)
Q Consensus       380 ~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~  458 (1252)
                      ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++|++|++.++.. |++
T Consensus         6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~   84 (302)
T TIGR01188         6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR   84 (302)
T ss_pred             eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence            358999999999999999999999999999999999999999999999998865 344567789999999998876 999


Q ss_pred             HHHhcCCCC--CCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCh
Q 000856          459 ENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA  536 (1252)
Q Consensus       459 ~ni~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~  536 (1252)
                      ||+.+....  ....+...     .+.+.++.+  |+.........+||||||||++|||||+.+|++|||||||++||+
T Consensus        85 e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~  157 (302)
T TIGR01188        85 ENLEMMGRLYGLPKDEAEE-----RAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP  157 (302)
T ss_pred             HHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence            999864211  11111111     122344444  555556777889999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHhc-CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          537 GSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       537 ~~~~~~~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      .+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus       158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~  214 (302)
T TIGR01188       158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR  214 (302)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence            99999999999885 48999999999999976 899999999999999999988654

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-39  Score=362.78  Aligned_cols=220  Identities=30%  Similarity=0.490  Sum_probs=183.6

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccccCCC-HH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTLQ-LR  437 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~~-~~  437 (1252)
                      .++++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...+ ..
T Consensus        21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~   97 (276)
T PRK14271         21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL   97 (276)
T ss_pred             EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence            5899999999974   3589999999999999999999999999999999999986     7999999999887653 34


Q ss_pred             HHhhhceEEccCCCCchhcHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHhhC--CCCccccccCCCCCCChHHHHHH
Q 000856          438 WLRDQIGLVNQEPALFATTILENILYGKPE---ATMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQRI  512 (1252)
Q Consensus       438 ~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~g~~LSgGqkqRv  512 (1252)
                      .+++.++|++|++.+|+.|+++|+.++...   ....+.....     .+.++.+  ...+.+..++.+.+||||||||+
T Consensus        98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl  172 (276)
T PRK14271         98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL  172 (276)
T ss_pred             HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence            567889999999999989999999875321   1222222111     1222222  11122345677889999999999


Q ss_pred             HHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          513 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       513 ~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus       173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~  252 (276)
T PRK14271        173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS  252 (276)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999999999999999999999999999999999988667899999999999876 899999999999999999998654

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.5e-39  Score=359.17  Aligned_cols=218  Identities=31%  Similarity=0.449  Sum_probs=181.7

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccccCC--CH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTL--QL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~--~~  436 (1252)
                      .++++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...  +.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   80 (251)
T PRK14270          4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV   80 (251)
T ss_pred             EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence            5899999999963   3489999999999999999999999999999999999875     799999999998643  33


Q ss_pred             HHHhhhceEEccCCCCchhcHHHHHhcCCCCC---CHH----HHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHH
Q 000856          437 RWLRDQIGLVNQEPALFATTILENILYGKPEA---TMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK  509 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqk  509 (1252)
                      ..+++.++|++|++.+++.|++||+.++....   ...    ++..+++.+++.       .++....+..+.+||||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LS~G~~  153 (251)
T PRK14270         81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALW-------DEVKDDLKKSALKLSGGQQ  153 (251)
T ss_pred             HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCc-------hhhhhHhhCCcccCCHHHH
Confidence            45677899999999999899999998753211   111    122222222221       1222345667889999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       510 qRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      ||++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~  233 (251)
T PRK14270        154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI  233 (251)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence            9999999999999999999999999999999999999988767999999999999876 899999999999999999988


Q ss_pred             Hhc
Q 000856          589 IAK  591 (1252)
Q Consensus       589 ~~~  591 (1252)
                      ...
T Consensus       234 ~~~  236 (251)
T PRK14270        234 FLE  236 (251)
T ss_pred             hcC
Confidence            654

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-39  Score=362.00  Aligned_cols=217  Identities=30%  Similarity=0.506  Sum_probs=179.6

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccccCCC--HH
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKTLQ--LR  437 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~~~--~~  437 (1252)
                      -+++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++...+  ..
T Consensus         6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   82 (251)
T PRK14244          6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV   82 (251)
T ss_pred             EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence            478999999963   358999999999999999999999999999999999986     47999999999886543  23


Q ss_pred             HHhhhceEEccCCCCchhcHHHHHhcCCC--CC--CHHHHHHHHHHhcHHHHHhhCCCCcc----ccccCCCCCCChHHH
Q 000856          438 WLRDQIGLVNQEPALFATTILENILYGKP--EA--TMAEVEAAASAANAHSFITLLPNGYS----TQVGERGVQLSGGQK  509 (1252)
Q Consensus       438 ~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~g~~LSgGqk  509 (1252)
                      .+++.++|++|++.+|+.|++||+.++..  ..  ...+...     .+.+.++.+  |+.    +.++..+.+||||||
T Consensus        83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LS~Gq~  155 (251)
T PRK14244         83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDE-----IVEKSLTSV--GLWEELGDRLKDSAFELSGGQQ  155 (251)
T ss_pred             HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHH-----HHHHHHHHc--CCCchhhhHhhcChhhCCHHHH
Confidence            56778999999999998899999987521  10  1111111     112223333  332    245667889999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       510 qRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      ||++|||||+++|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus       156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~  235 (251)
T PRK14244        156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI  235 (251)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence            9999999999999999999999999999999999999988778999999999999876 899999999999999999888


Q ss_pred             Hhc
Q 000856          589 IAK  591 (1252)
Q Consensus       589 ~~~  591 (1252)
                      .+.
T Consensus       236 ~~~  238 (251)
T PRK14244        236 FKN  238 (251)
T ss_pred             hcC
Confidence            654

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=3.4e-39  Score=360.60  Aligned_cols=221  Identities=24%  Similarity=0.377  Sum_probs=183.8

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC--------CcEEEECCccccCCCH
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN--------AGHVLLDNVDIKTLQL  436 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~--------~G~i~~~g~~~~~~~~  436 (1252)
                      |+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|+        +|+|.++|.++...+.
T Consensus         2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~   78 (272)
T PRK13547          2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA   78 (272)
T ss_pred             eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence            689999999964   35899999999999999999999999999999999999998        9999999999887777


Q ss_pred             HHHhhhceEEccCCC-CchhcHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 000856          437 RWLRDQIGLVNQEPA-LFATTILENILYGKPEA-TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI  514 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~-l~~~tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~l  514 (1252)
                      ..+++.++|++|++. ++..|++||+.++.... .............+.+.++.+  |+.+..++.+.+||||||||++|
T Consensus        79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l  156 (272)
T PRK13547         79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA--GATALVGRDVTTLSGGELARVQF  156 (272)
T ss_pred             HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHH
Confidence            777778999999986 46679999998753111 000000000011122344444  67777788889999999999999


Q ss_pred             HHHhc---------cCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEe
Q 000856          515 ARAML---------KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVET  582 (1252)
Q Consensus       515 ARal~---------~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~  582 (1252)
                      ||||+         .+|++|||||||++||+.+++.+.+.|+++.+  ++|+|++||+++.+.. ||++++|++|++++.
T Consensus       157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~  236 (272)
T PRK13547        157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH  236 (272)
T ss_pred             HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence            99999         59999999999999999999999999998753  7999999999999965 899999999999999


Q ss_pred             cChHHHHh
Q 000856          583 GTHEELIA  590 (1252)
Q Consensus       583 g~~~~l~~  590 (1252)
                      |+++++..
T Consensus       237 g~~~~~~~  244 (272)
T PRK13547        237 GAPADVLT  244 (272)
T ss_pred             cCHHHHcC
Confidence            99988754

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=8.8e-39  Score=356.67  Aligned_cols=223  Identities=26%  Similarity=0.419  Sum_probs=181.9

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcc-----cCCCCHHH
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD-----IRRLNLKS 1083 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~d-----i~~~~~~~ 1083 (1252)
                      .|+++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+     +...+...
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (253)
T TIGR02323         3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE   79 (253)
T ss_pred             eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence            4899999999963   358999999999999999999999999999999999999999999999988     77666553


Q ss_pred             ----HhcccEEEccccc--c-CcccHHHHhccC-----CCC--CCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCC
Q 000856         1084 ----LRLKIGLVQQEPA--L-FAASIFDNIAYG-----KEG--ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQL 1149 (1252)
Q Consensus      1084 ----lR~~i~~VpQd~~--l-f~gTIreNl~~~-----~~~--~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~L 1149 (1252)
                          +++.++|++|++.  + +..|+.+|+...     ...  ..++++.+.++..++.+          +........|
T Consensus        80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~L  149 (253)
T TIGR02323        80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAF  149 (253)
T ss_pred             HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhc
Confidence                3467999999984  2 345888887531     111  11234444444444421          2233445679


Q ss_pred             ChhHHHHHHHHHHHccCCCEEEEeccCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhc-cCEEEEEeCCEEEE
Q 000856         1150 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVE 1226 (1252)
Q Consensus      1150 SgGQrQrlaLARALl~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~--~~~TvI~IaHrl~ti~~-~DrI~vl~~G~Ive 1226 (1252)
                      |||||||++|||||+++|++|||||||++||+.+...+.+.|++..  .+.|+|+|||+++.+.. ||++++|++|++++
T Consensus       150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~  229 (253)
T TIGR02323       150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE  229 (253)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence            9999999999999999999999999999999999999999998864  37899999999999974 89999999999999


Q ss_pred             ecChhhhhcCCCchhHHH
Q 000856         1227 QGSHSELVSRPDGAYSRL 1244 (1252)
Q Consensus      1227 ~G~~~eLl~~~~g~y~~l 1244 (1252)
                      .|+++++..++...|.++
T Consensus       230 ~~~~~~~~~~~~~~~~~~  247 (253)
T TIGR02323       230 SGLTDQVLDDPQHPYTQL  247 (253)
T ss_pred             ECCHHHHhcCCCCHHHHH
Confidence            999999987655555544

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=100.00  E-value=4.9e-38  Score=409.17  Aligned_cols=212  Identities=26%  Similarity=0.372  Sum_probs=151.6

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHH---------HHhccCCCCC----ce----EEE
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIA---------LIERFYDPTA----GK----VMI 1071 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~---------lL~rl~~p~~----G~----I~i 1071 (1252)
                      .++++|++.        ..|+|+|++|++||.++|+|+||||||||++         .|.|...+..    +.    |.|
T Consensus       600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i  671 (1809)
T PRK00635        600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI  671 (1809)
T ss_pred             eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence            478888762        2699999999999999999999999999999         5555432211    12    456


Q ss_pred             CCcccCCCC----HH------HHhc---------c-----cEEEccc------------------c--------------
Q 000856         1072 DGKDIRRLN----LK------SLRL---------K-----IGLVQQE------------------P-------------- 1095 (1252)
Q Consensus      1072 dG~di~~~~----~~------~lR~---------~-----i~~VpQd------------------~-------------- 1095 (1252)
                      |..++..-+    ..      .+|+         +     ..+.+|.                  |              
T Consensus       672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy  751 (1809)
T PRK00635        672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF  751 (1809)
T ss_pred             cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence            655554321    11      3341         1     1122221                  0              


Q ss_pred             ------ccC-cccHHHHhccCCCCC-----CHHHHHHHHHHcCchhhHhhCCCcCCCc-cCCCCCCCChhHHHHHHHHHH
Q 000856         1096 ------ALF-AASIFDNIAYGKEGA-----TEAEVVEAARAANVHGFVSALPNAYKTP-VGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1096 ------~lf-~gTIreNl~~~~~~~-----~deei~~al~~~~l~~~i~~lp~gldt~-vge~G~~LSgGQrQrlaLARA 1162 (1252)
                            ..+ .-||.|||.++..++     ..+++.+.++      .++.+  |++.. .+.....||||||||++||||
T Consensus       752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra  823 (1809)
T PRK00635        752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE  823 (1809)
T ss_pred             CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence                  122 237888887753211     1223333221      11211  44433 455667899999999999999


Q ss_pred             Hc---cCCCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhccCEEEEEe------CCEEEEecChhh
Q 000856         1163 VL---KNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQ------DGRIVEQGSHSE 1232 (1252)
Q Consensus      1163 Ll---~~p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~~~DrI~vl~------~G~Ive~G~~~e 1232 (1252)
                      |+   ++|++|||||||++||+.+...+.+.|+++. +|.|||+|+|+++.+..||+|++|.      +|++++.|+|++
T Consensus       824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee  903 (1809)
T PRK00635        824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE  903 (1809)
T ss_pred             HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence            98   5999999999999999999999999999875 5889999999999998899999996      899999999999


Q ss_pred             hhcC
Q 000856         1233 LVSR 1236 (1252)
Q Consensus      1233 Ll~~ 1236 (1252)
                      +.+.
T Consensus       904 l~~~  907 (1809)
T PRK00635        904 LIHL  907 (1809)
T ss_pred             HHhc
Confidence            9864

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-39  Score=362.57  Aligned_cols=219  Identities=28%  Similarity=0.480  Sum_probs=180.1

Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccccC--CC
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKT--LQ  435 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~--~~  435 (1252)
                      ..|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|.++..  .+
T Consensus        38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~  114 (285)
T PRK14254         38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD  114 (285)
T ss_pred             ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence            35899999999964   358999999999999999999999999999999999997     689999999998854  34


Q ss_pred             HHHHhhhceEEccCCCCchhcHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHhhCCCCc----cccccCCCCCCChHHHH
Q 000856          436 LRWLRDQIGLVNQEPALFATTILENILYGKPEAT-MAEVEAAASAANAHSFITLLPNGY----STQVGERGVQLSGGQKQ  510 (1252)
Q Consensus       436 ~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~g~~LSgGqkq  510 (1252)
                      ...+++.++|++|++.+|..|++||+.++..... ..+...     .+.+.++.+  |+    ....++.+.+|||||||
T Consensus       115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~i~~~~~~~~~~LSgGe~q  187 (285)
T PRK14254        115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDE-----RVEESLRRA--ALWDEVKDQLDSSGLDLSGGQQQ  187 (285)
T ss_pred             hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHH-----HHHHHHHHc--CCCchhHHHHhCCcccCCHHHHH
Confidence            4567788999999999988899999986521100 011111     112223222  22    23456778899999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEE-EEeCCEEEEecChHHH
Q 000856          511 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVA-VIQQGQVVETGTHEEL  588 (1252)
Q Consensus       511 Rv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~-~l~~G~i~~~g~~~~l  588 (1252)
                      |++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|++++.|+++++
T Consensus       188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~  267 (285)
T PRK14254        188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI  267 (285)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence            999999999999999999999999999999999999998767899999999999876 89975 5799999999999887


Q ss_pred             Hhc
Q 000856          589 IAK  591 (1252)
Q Consensus       589 ~~~  591 (1252)
                      ..+
T Consensus       268 ~~~  270 (285)
T PRK14254        268 FEN  270 (285)
T ss_pred             HhC
Confidence            543

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=4.4e-39  Score=351.89  Aligned_cols=205  Identities=27%  Similarity=0.450  Sum_probs=178.7

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      ++++||+++|++   .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++....    ++.++
T Consensus         1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~   73 (223)
T TIGR03740         1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG   73 (223)
T ss_pred             CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence            478999999963   36999999999999999999999999999999999999999999999999875422    35799


Q ss_pred             EEccccccCc-ccHHHHhccCC--CCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 000856         1090 LVQQEPALFA-ASIFDNIAYGK--EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 1166 (1252)
Q Consensus      1090 ~VpQd~~lf~-gTIreNl~~~~--~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 1166 (1252)
                      |+||++.+|. .|++||+.++.  ....++++.++++..++.+.....           ...||||||||++||||++++
T Consensus        74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~~rv~laral~~~  142 (223)
T TIGR03740        74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQFSLGMKQRLGIAIALLNH  142 (223)
T ss_pred             EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------HhhCCHHHHHHHHHHHHHhcC
Confidence            9999998876 69999997532  123567788888888887654432           246999999999999999999


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEEEEecChhh
Q 000856         1167 PAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSE 1232 (1252)
Q Consensus      1167 p~ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~Ive~G~~~e 1232 (1252)
                      |++|+|||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|++.+
T Consensus       143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~  210 (223)
T TIGR03740       143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK  210 (223)
T ss_pred             CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence            99999999999999999999999999875 4789999999999985 589999999999999998865

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=4.4e-39  Score=348.95  Aligned_cols=205  Identities=29%  Similarity=0.485  Sum_probs=169.1

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      |+++|++++|++.   .  .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.  .++.++
T Consensus         1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~   73 (211)
T cd03298           1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS   73 (211)
T ss_pred             CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence            4789999999632   2  39999999999999999999999999999999999999999999999876543  346799


Q ss_pred             EEccCCCCchh-cHHHHHhcCCCC-CC-HHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccC
Q 000856          445 LVNQEPALFAT-TILENILYGKPE-AT-MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKN  521 (1252)
Q Consensus       445 ~v~Q~~~l~~~-tv~~ni~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~  521 (1252)
                      |++|++.++.+ |++||+.++... .. ..+..     ..+.+.++.+  |++........+||||||||++||||++.+
T Consensus        74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~ia~al~~~  146 (211)
T cd03298          74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDR-----QAIEVALARV--GLAGLEKRLPGELSGGERQRVALARVLVRD  146 (211)
T ss_pred             EEecccccCCCCcHHHHHhcccccccCccHHHH-----HHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence            99999999876 999999876321 11 01100     1112233333  454455566779999999999999999999


Q ss_pred             CCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEec
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG  583 (1252)
Q Consensus       522 ~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g  583 (1252)
                      |+++||||||++||+.+++.+.+.|+++.  .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus       147 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~  211 (211)
T cd03298         147 KPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG  211 (211)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence            99999999999999999999999999875  38999999999999976 8999999999998754

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=6.6e-39  Score=359.13  Aligned_cols=220  Identities=27%  Similarity=0.399  Sum_probs=181.0

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC---CcEEEECCccccCC-----C
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN---AGHVLLDNVDIKTL-----Q  435 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~~~g~~~~~~-----~  435 (1252)
                      .|+++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|+   +|+|.++|.++...     +
T Consensus         4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~   80 (262)
T PRK09984          4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD   80 (262)
T ss_pred             EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence            4899999999964   35899999999999999999999999999999999999986   49999999988643     2


Q ss_pred             HHHHhhhceEEccCCCCchh-cHHHHHhcCCCCCCH--HH---HHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHH
Q 000856          436 LRWLRDQIGLVNQEPALFAT-TILENILYGKPEATM--AE---VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK  509 (1252)
Q Consensus       436 ~~~~~~~i~~v~Q~~~l~~~-tv~~ni~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqk  509 (1252)
                      ...+++.++|++|++.++.. |++||+.++......  ..   .........+.+.++.+  |+.......+.+||||||
T Consensus        81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~  158 (262)
T PRK09984         81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQ  158 (262)
T ss_pred             HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHH
Confidence            34567789999999988875 999999876321100  00   00000111223444444  565556778889999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChH
Q 000856          510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE  586 (1252)
Q Consensus       510 qRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~  586 (1252)
                      ||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.  .|+|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus       159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~  238 (262)
T PRK09984        159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ  238 (262)
T ss_pred             HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence            99999999999999999999999999999999999999885  37999999999998755 8999999999999999998


Q ss_pred             HH
Q 000856          587 EL  588 (1252)
Q Consensus       587 ~l  588 (1252)
                      ++
T Consensus       239 ~~  240 (262)
T PRK09984        239 QF  240 (262)
T ss_pred             Hh
Confidence            86

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-39  Score=358.42  Aligned_cols=218  Identities=29%  Similarity=0.488  Sum_probs=180.4

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccccCC--CH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKTL--QL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~~--~~  436 (1252)
                      .|+++|++++|++   .++|+|+||++++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++...  +.
T Consensus         3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~   79 (250)
T PRK14262          3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV   79 (250)
T ss_pred             eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence            4899999999963   3589999999999999999999999999999999999984     899999999988643  23


Q ss_pred             HHHhhhceEEccCCCCchhcHHHHHhcCCCC---CCHHH----HHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHH
Q 000856          437 RWLRDQIGLVNQEPALFATTILENILYGKPE---ATMAE----VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK  509 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqk  509 (1252)
                      ..+++.++|++|++.++..|++||+.++...   ...++    +..+++..++.+       .++...++.+.+||||||
T Consensus        80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~  152 (250)
T PRK14262         80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWD-------EVKSELNKPGTRLSGGQQ  152 (250)
T ss_pred             HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCc-------hhHHHHhCChhhcCHHHH
Confidence            4567789999999999889999999875311   11111    122222222111       112345677889999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHH
Q 000856          510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEEL  588 (1252)
Q Consensus       510 qRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l  588 (1252)
                      ||++||||++.+|+++||||||++||+.++..+.+.|.++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus       153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~  232 (250)
T PRK14262        153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI  232 (250)
T ss_pred             HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence            9999999999999999999999999999999999999998778999999999998765 899999999999999999888


Q ss_pred             Hhc
Q 000856          589 IAK  591 (1252)
Q Consensus       589 ~~~  591 (1252)
                      .+.
T Consensus       233 ~~~  235 (250)
T PRK14262        233 VER  235 (250)
T ss_pred             HhC
Confidence            653

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4e-39  Score=360.03  Aligned_cols=218  Identities=32%  Similarity=0.456  Sum_probs=181.5

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccccC--CCH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--LQL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~~~  436 (1252)
                      .++++|++++|++   ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.++|+++..  ...
T Consensus         7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   83 (259)
T PRK14260          7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI   83 (259)
T ss_pred             eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence            5899999999963   3489999999999999999999999999999999999985     48999999998854  344


Q ss_pred             HHHhhhceEEccCCCCchhcHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHH
Q 000856          437 RWLRDQIGLVNQEPALFATTILENILYGKPE---ATM----AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQK  509 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqk  509 (1252)
                      ..++++++|++|++.+|+.|++||+.++...   ...    +.+.++++..++.+.       +....++.+.+||||||
T Consensus        84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~  156 (259)
T PRK14260         84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQE-------VKDKLNKSALGLSGGQQ  156 (259)
T ss_pred             HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-------hhhHhcCCcccCCHHHH
Confidence            5677889999999999989999999875211   111    122233333332211       12334667789999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEe-----CCEEEEec
Q 000856          510 QRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQ-----QGQVVETG  583 (1252)
Q Consensus       510 qRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~-----~G~i~~~g  583 (1252)
                      ||++|||||+++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|+     +|++++.|
T Consensus       157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~  236 (259)
T PRK14260        157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG  236 (259)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence            9999999999999999999999999999999999999998777999999999999876 89999997     59999999


Q ss_pred             ChHHHHhc
Q 000856          584 THEELIAK  591 (1252)
Q Consensus       584 ~~~~l~~~  591 (1252)
                      +++++.+.
T Consensus       237 ~~~~~~~~  244 (259)
T PRK14260        237 VTTQIFSN  244 (259)
T ss_pred             CHHHHhcC
Confidence            99998653

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.1e-39  Score=362.43  Aligned_cols=221  Identities=29%  Similarity=0.437  Sum_probs=180.5

Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC-----CCCcEEEECCccccCC--C
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD-----PNAGHVLLDNVDIKTL--Q  435 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-----~~~G~i~~~g~~~~~~--~  435 (1252)
                      ..|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+.+     |++|+|.++|.++...  +
T Consensus        38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~  114 (286)
T PRK14275         38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD  114 (286)
T ss_pred             eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence            45899999999964   348999999999999999999999999999999999864     4999999999988643  2


Q ss_pred             HHHHhhhceEEccCCCCchhcHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHhhC--CCCccccccCCCCCCChHHHH
Q 000856          436 LRWLRDQIGLVNQEPALFATTILENILYGKPE--A-TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQ  510 (1252)
Q Consensus       436 ~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~g~~LSgGqkq  510 (1252)
                      ...+|++++|++|++.+++.|++||+.++...  . ........     +.+.++.+  ..++.......+.+|||||||
T Consensus       115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q  189 (286)
T PRK14275        115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEI-----VEKSLRKAALWDEVSDRLDKNALGLSGGQQQ  189 (286)
T ss_pred             hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHH-----HHHHHHHhCCccchhhHhhCChhhCCHHHHH
Confidence            34567789999999999988999999875321  1 11111111     11122222  011223446678899999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHH
Q 000856          511 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI  589 (1252)
Q Consensus       511 Rv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~  589 (1252)
                      |++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~  269 (286)
T PRK14275        190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF  269 (286)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999988767899999999999866 8999999999999999999886


Q ss_pred             hc
Q 000856          590 AK  591 (1252)
Q Consensus       590 ~~  591 (1252)
                      ++
T Consensus       270 ~~  271 (286)
T PRK14275        270 TN  271 (286)
T ss_pred             hC
Confidence            54

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-39  Score=359.75  Aligned_cols=220  Identities=30%  Similarity=0.450  Sum_probs=179.7

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccccC--CCH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--LQL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~~~  436 (1252)
                      .++++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|.++..  .+.
T Consensus         4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~   80 (258)
T PRK14241          4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP   80 (258)
T ss_pred             cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence            4899999999974   3489999999999999999999999999999999999974     79999999998853  344


Q ss_pred             HHHhhhceEEccCCCCchh-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHhhC--CCCccccccCCCCCCChHHHH
Q 000856          437 RWLRDQIGLVNQEPALFAT-TILENILYGKPE---ATMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQ  510 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~-tv~~ni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~g~~LSgGqkq  510 (1252)
                      ..+++.++|++|++.++.. |++||+.++...   .......+.     +.+.++.+  ..+........+.+|||||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q  155 (258)
T PRK14241         81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL-----VEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ  155 (258)
T ss_pred             HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence            5677889999999998875 999999865311   111111111     11222222  001123456777899999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEe------CCEEEEec
Q 000856          511 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQ------QGQVVETG  583 (1252)
Q Consensus       511 Rv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~------~G~i~~~g  583 (1252)
                      |++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|+      +|++++.|
T Consensus       156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~  235 (258)
T PRK14241        156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID  235 (258)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecC
Confidence            999999999999999999999999999999999999998767999999999999865 89999997      89999999


Q ss_pred             ChHHHHhc
Q 000856          584 THEELIAK  591 (1252)
Q Consensus       584 ~~~~l~~~  591 (1252)
                      +++++...
T Consensus       236 ~~~~~~~~  243 (258)
T PRK14241        236 DTEKIFSN  243 (258)
T ss_pred             CHHHHHhC
Confidence            99988653

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.6e-39  Score=312.56  Aligned_cols=212  Identities=31%  Similarity=0.442  Sum_probs=179.3

Q ss_pred             cEEEEeEEEECCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHH---HH
Q 000856          364 NIEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLR---WL  439 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~---~~  439 (1252)
                      .|+++++++.-++. .+..+|++++|.|++||.++||||||||||||+-+++|+.+|++|+|.+.|+++..++.+   .+
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~   85 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL   85 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence            47888998887643 346799999999999999999999999999999999999999999999999999888754   34


Q ss_pred             h-hhceEEccCCCCchh-cHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 000856          440 R-DQIGLVNQEPALFAT-TILENILYGKPEAT--MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA  515 (1252)
Q Consensus       440 ~-~~i~~v~Q~~~l~~~-tv~~ni~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lA  515 (1252)
                      | +++|+|||..+|.+. |-.||+....+-..  ..+..     ..+.+.+...  |+...+...+.+||||++||||||
T Consensus        86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~-----~~A~~lL~~v--GLg~Rl~HyP~qLSGGEQQRVAiA  158 (228)
T COG4181          86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSR-----AGAKALLEAV--GLGKRLTHYPAQLSGGEQQRVALA  158 (228)
T ss_pred             hccceeEEEEeeeccccchhhhhccchhhhcCCccccHH-----HHHHHHHHHh--CcccccccCccccCchHHHHHHHH
Confidence            4 579999999998855 99999987644222  11111     1112334433  777778888889999999999999


Q ss_pred             HHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhccCEEEEEeCCEEEEe
Q 000856          516 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVET  582 (1252)
Q Consensus       516 Ral~~~~~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~  582 (1252)
                      ||+...|+||+-||||.+||..+.+++.+.+..+.  .|.|.|+||||+....+|||++-|++|+++++
T Consensus       159 RAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~  227 (228)
T COG4181         159 RAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED  227 (228)
T ss_pred             HHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence            99999999999999999999999999999998774  48999999999999999999999999999753

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=4.5e-39  Score=336.59  Aligned_cols=170  Identities=35%  Similarity=0.649  Sum_probs=157.4

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      ++++|++++|++   .++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ..+|++++
T Consensus         1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~   76 (173)
T cd03230           1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG   76 (173)
T ss_pred             CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence            478999999963   35999999999999999999999999999999999999999999999999988765 66788999


Q ss_pred             EEccccccCcc-cHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCC
Q 000856         1090 LVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 1168 (1252)
Q Consensus      1090 ~VpQd~~lf~g-TIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~ 1168 (1252)
                      |+||++.+|.+ |++||+.                                         ||||||||++|||||+++|+
T Consensus        77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~  115 (173)
T cd03230          77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE  115 (173)
T ss_pred             EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence            99999998876 9999984                                         99999999999999999999


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-ccCEEEEEeCCEE
Q 000856         1169 ILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRI 1224 (1252)
Q Consensus      1169 ILiLDEpTS~LD~~te~~i~~~l~~~~-~~~TvI~IaHrl~ti~-~~DrI~vl~~G~I 1224 (1252)
                      +|||||||++||+.+...+.+.|++.. ++.|+|++||+.+.+. .||++++|++|++
T Consensus       116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i  173 (173)
T cd03230         116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI  173 (173)
T ss_pred             EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence            999999999999999999999999875 4689999999999887 5899999999974

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=4.1e-39  Score=373.53  Aligned_cols=231  Identities=33%  Similarity=0.494  Sum_probs=184.7

Q ss_pred             ccEEEEeEEEECCCC--------CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccc--c
Q 000856          363 GNIEFKNVTFSYPSR--------PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDI--K  432 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~--------~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~--~  432 (1252)
                      .-++++|++++|...        ....+++||||++++||++||||+||||||||.++|+|+++|++|+|.++|.|+  +
T Consensus       279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~  358 (539)
T COG1123         279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT  358 (539)
T ss_pred             ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence            458899999999742        235689999999999999999999999999999999999999999999999872  2


Q ss_pred             CCCHHHHhhhceEEccCCC--Cch-hcHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHhhCCCCccc-cccCCCCCCChH
Q 000856          433 TLQLRWLRDQIGLVNQEPA--LFA-TTILENILYGKPEATM-AEVEAAASAANAHSFITLLPNGYST-QVGERGVQLSGG  507 (1252)
Q Consensus       433 ~~~~~~~~~~i~~v~Q~~~--l~~-~tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~g~~LSgG  507 (1252)
                      .-+....|+++-+|+|||.  |-+ .||+++|.-....... .......+..   +.++..  |+.. ..++.+.+||||
T Consensus       359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~---~ll~~V--gL~~~~l~ryP~elSGG  433 (539)
T COG1123         359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVA---ELLELV--GLPPEFLDRYPHELSGG  433 (539)
T ss_pred             cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHH---HHHHHc--CCCHHHHhcCchhcCcc
Confidence            2234467788999999995  433 3999999753211110 0011111122   222222  4444 467888899999


Q ss_pred             HHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecC
Q 000856          508 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT  584 (1252)
Q Consensus       508 qkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~  584 (1252)
                      ||||+||||||+.+|+++++|||||+||+..+..+.+.|+++.+  |.|.|+||||++.++. ||||+||++|+|+|.|+
T Consensus       434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~  513 (539)
T COG1123         434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP  513 (539)
T ss_pred             hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCC
Confidence            99999999999999999999999999999999999999999863  8999999999999988 89999999999999999


Q ss_pred             hHHHHhc-ccchHHH
Q 000856          585 HEELIAK-AGAYASL  598 (1252)
Q Consensus       585 ~~~l~~~-~~~~~~~  598 (1252)
                      .+++.+. ...|.+.
T Consensus       514 ~~~v~~~p~h~Ytr~  528 (539)
T COG1123         514 TEKVFENPQHPYTRK  528 (539)
T ss_pred             HHHHhcCCCChHHHH
Confidence            9888776 3455443

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=5.9e-39  Score=335.01  Aligned_cols=171  Identities=56%  Similarity=0.918  Sum_probs=161.1

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhcccE
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      ++++|++++|++. ..++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|++++
T Consensus         1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~   79 (171)
T cd03228           1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA   79 (171)
T ss_pred             CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence            4789999999643 125899999999999999999999999999999999999999999999999998888888899999


Q ss_pred             EEccccccCcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccCCCE
Q 000856         1090 LVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAI 1169 (1252)
Q Consensus      1090 ~VpQd~~lf~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~p~I 1169 (1252)
                      |++|++.+|+.|++||+                                          ||||||||++||||++++|++
T Consensus        80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l  117 (171)
T cd03228          80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI  117 (171)
T ss_pred             EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence            99999999999999998                                          999999999999999999999


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccCEEEEEeCCE
Q 000856         1170 LLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGR 1223 (1252)
Q Consensus      1170 LiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~DrI~vl~~G~ 1223 (1252)
                      |||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|+
T Consensus       118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~  171 (171)
T cd03228         118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR  171 (171)
T ss_pred             EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence            999999999999999999999998877799999999999998899999999985

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-38  Score=350.99  Aligned_cols=214  Identities=29%  Similarity=0.462  Sum_probs=177.2

Q ss_pred             EEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCccccCCCHHHHhhhce
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      ++++|++++|++.     ..|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+..  ++.++
T Consensus         2 l~~~~l~~~~~~~-----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~   74 (232)
T PRK10771          2 LKLTDITWLYHHL-----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS   74 (232)
T ss_pred             eEEEEEEEEECCc-----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence            6899999999632     2499999999999999999999999999999999999999999999988765432  45799


Q ss_pred             EEccCCCCchh-cHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhccCC
Q 000856          445 LVNQEPALFAT-TILENILYGKP-EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP  522 (1252)
Q Consensus       445 ~v~Q~~~l~~~-tv~~ni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkqRv~lARal~~~~  522 (1252)
                      |++|++.++.+ |++||+.++.. .....+    .....+.+.++.+  |++.........||||||||++||||++++|
T Consensus        75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~----~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p  148 (232)
T PRK10771         75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNA----AQREKLHAIARQM--GIEDLLARLPGQLSGGQRQRVALARCLVREQ  148 (232)
T ss_pred             EEecccccccCCcHHHHHhcccccccCCCH----HHHHHHHHHHHHc--CcHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence            99999998876 99999987531 111000    0011122333333  5555566667799999999999999999999


Q ss_pred             CEEEEeCCCCCCChHhHHHHHHHHHHhc--CCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHHhc
Q 000856          523 KILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       523 ~illlDEpts~LD~~~~~~~~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +++||||||++||+.+++.+.+.|+++.  .|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus       149 ~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~  220 (232)
T PRK10771        149 PILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG  220 (232)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence            9999999999999999999999999874  37899999999999876 899999999999999999888654

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.3e-39  Score=358.41  Aligned_cols=220  Identities=29%  Similarity=0.448  Sum_probs=180.0

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCC-----CcEEEECCccccC--CCH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN-----AGHVLLDNVDIKT--LQL  436 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~-----~G~i~~~g~~~~~--~~~  436 (1252)
                      .++++|++++|++   .++|+|+||+|++||+++|+||||||||||+++|+|+++|+     +|+|.++|.++..  .+.
T Consensus         4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~   80 (252)
T PRK14272          4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP   80 (252)
T ss_pred             EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence            4789999999963   35899999999999999999999999999999999999874     8999999998864  334


Q ss_pred             HHHhhhceEEccCCCCchh-cHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHhhC--CCCccccccCCCCCCChHHHH
Q 000856          437 RWLRDQIGLVNQEPALFAT-TILENILYGKPE--A-TMAEVEAAASAANAHSFITLL--PNGYSTQVGERGVQLSGGQKQ  510 (1252)
Q Consensus       437 ~~~~~~i~~v~Q~~~l~~~-tv~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~g~~LSgGqkq  510 (1252)
                      ..+++.++|++|++.++.. |++||+.++...  . ..++..+.+.     +.+..+  ..++.......+.+|||||||
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~l~~~~~~~~~~LS~G~~q  155 (252)
T PRK14272         81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE-----RSLRGAALWDEVKDRLKTPATGLSGGQQQ  155 (252)
T ss_pred             HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHHHcCcchhhhhhhcCCcccCCHHHHH
Confidence            5667789999999998875 999999864321  1 1222222111     111111  111222345667899999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecChHHHH
Q 000856          511 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI  589 (1252)
Q Consensus       511 Rv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~  589 (1252)
                      |++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus       156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14272        156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF  235 (252)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999999999999999999999999998778999999999999976 8999999999999999999886


Q ss_pred             hc
Q 000856          590 AK  591 (1252)
Q Consensus       590 ~~  591 (1252)
                      ..
T Consensus       236 ~~  237 (252)
T PRK14272        236 TN  237 (252)
T ss_pred             hC
Confidence            54

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-38  Score=358.07  Aligned_cols=219  Identities=32%  Similarity=0.457  Sum_probs=181.8

Q ss_pred             ccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccccC--CC
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT--LQ  435 (1252)
Q Consensus       363 ~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~--~~  435 (1252)
                      ..|+++|++++|++   ..+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..  ..
T Consensus        19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~   95 (274)
T PRK14265         19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN   95 (274)
T ss_pred             ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence            36999999999974   3589999999999999999999999999999999999863     69999999998854  23


Q ss_pred             HHHHhhhceEEccCCCCchhcHHHHHhcCCCCCC-----HHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCChHHHH
Q 000856          436 LRWLRDQIGLVNQEPALFATTILENILYGKPEAT-----MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQ  510 (1252)
Q Consensus       436 ~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LSgGqkq  510 (1252)
                      ...+++.++|++|++.+++.|+.||+.++.....     .+....+++.+++.+       ++.....+.+.+|||||||
T Consensus        96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq~q  168 (274)
T PRK14265         96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWE-------EVKDKLKEKGTALSGGQQQ  168 (274)
T ss_pred             hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccch-------hhHHHhcCCcccCCHHHHH
Confidence            4456788999999999998899999987532111     111222233332221       1223456677899999999


Q ss_pred             HHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEe---------CCEEE
Q 000856          511 RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQ---------QGQVV  580 (1252)
Q Consensus       511 Rv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~---------~G~i~  580 (1252)
                      |++|||||+.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+.. ||++++|+         +|+++
T Consensus       169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~  248 (274)
T PRK14265        169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV  248 (274)
T ss_pred             HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence            999999999999999999999999999999999999998778999999999999966 89999997         89999


Q ss_pred             EecChHHHHhc
Q 000856          581 ETGTHEELIAK  591 (1252)
Q Consensus       581 ~~g~~~~l~~~  591 (1252)
                      +.|+.+++...
T Consensus       249 ~~g~~~~~~~~  259 (274)
T PRK14265        249 EFSPTEQMFGS  259 (274)
T ss_pred             EeCCHHHHHhC
Confidence            99999998654

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=7.4e-39  Score=357.90  Aligned_cols=218  Identities=28%  Similarity=0.433  Sum_probs=181.0

Q ss_pred             cEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCCCCcEEEECCcc-----ccCCCHHH
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVD-----IKTLQLRW  438 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~-----~~~~~~~~  438 (1252)
                      .++++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+     +...+...
T Consensus         6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~   82 (258)
T PRK11701          6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE   82 (258)
T ss_pred             eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence            4899999999974   358999999999999999999999999999999999999999999999998     76665443


Q ss_pred             ----HhhhceEEccCCC--Cch-hcHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHhhCCCCcc-ccccCCCCCCChH
Q 000856          439 ----LRDQIGLVNQEPA--LFA-TTILENILYGK---PEATMAEVEAAASAANAHSFITLLPNGYS-TQVGERGVQLSGG  507 (1252)
Q Consensus       439 ----~~~~i~~v~Q~~~--l~~-~tv~~ni~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~g~~LSgG  507 (1252)
                          +++.++|++|++.  ++. .|+.+|+.+..   ......+..     ..+.+.++.+  |+. +..++.+.+||||
T Consensus        83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G  155 (258)
T PRK11701         83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERV--EIDAARIDDLPTTFSGG  155 (258)
T ss_pred             HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHc--CCChhHHhCCCccCCHH
Confidence                3557999999984  343 48888886421   001111111     1234556665  454 4667888999999


Q ss_pred             HHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCCEEEEecC
Q 000856          508 QKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT  584 (1252)
Q Consensus       508 qkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~  584 (1252)
                      ||||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+  |.|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus       156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~  235 (258)
T PRK11701        156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL  235 (258)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence            99999999999999999999999999999999999999998753  7899999999999975 89999999999999999


Q ss_pred             hHHHHhc
Q 000856          585 HEELIAK  591 (1252)
Q Consensus       585 ~~~l~~~  591 (1252)
                      ++++...
T Consensus       236 ~~~~~~~  242 (258)
T PRK11701        236 TDQVLDD  242 (258)
T ss_pred             HHHHhcC
Confidence            9988644

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=6.2e-39  Score=337.19  Aligned_cols=172  Identities=44%  Similarity=0.695  Sum_probs=159.2

Q ss_pred             EEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCC--HHHHhcc
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN--LKSLRLK 1087 (1252)
Q Consensus      1010 I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~--~~~lR~~ 1087 (1252)
                      |+++|++++|+.   .++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+  ...+++.
T Consensus         1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   77 (178)
T cd03229           1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR   77 (178)
T ss_pred             CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence            478999999963   36999999999999999999999999999999999999999999999999998876  5678899


Q ss_pred             cEEEccccccCc-ccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHccC
Q 000856         1088 IGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 1166 (1252)
Q Consensus      1088 i~~VpQd~~lf~-gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~~ 1166 (1252)
                      ++|+||+|.+|. .|++||+.+.                                       ||||||||++||||++++
T Consensus        78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~  118 (178)
T cd03229          78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD  118 (178)
T ss_pred             EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence            999999999885 5999999763                                       999999999999999999


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-ccCEEEEEeCCE
Q 000856         1167 PAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIR-GVDCIGVVQDGR 1223 (1252)
Q Consensus      1167 p~ILiLDEpTS~LD~~te~~i~~~l~~~~~--~~TvI~IaHrl~ti~-~~DrI~vl~~G~ 1223 (1252)
                      |+++||||||++||+.+...+.+.|++..+  ++|+|++||+++.+. .||+|++|++|+
T Consensus       119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~  178 (178)
T cd03229         119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK  178 (178)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence            999999999999999999999999998764  689999999999997 489999999985

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.7e-39  Score=358.55  Aligned_cols=219  Identities=29%  Similarity=0.470  Sum_probs=183.0

Q ss_pred             cccEEEEeEEEECCCCCCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccCC-----CCcEEEECCccccC---
Q 000856          362 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP-----NAGHVLLDNVDIKT---  433 (1252)
Q Consensus       362 ~~~i~~~~v~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-----~~G~i~~~g~~~~~---  433 (1252)
                      .+.|+++|++++|++   ..+|+|+||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|.++|.++..   
T Consensus        14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~   90 (265)
T PRK14252         14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP   90 (265)
T ss_pred             CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence            356999999999974   3599999999999999999999999999999999999875     79999999987742   


Q ss_pred             -CCHHHHhhhceEEccCCCCchhcHHHHHhcCCC--CCC-----HHHHHHHHHHhcHHHHHhhCCCCccccccCCCCCCC
Q 000856          434 -LQLRWLRDQIGLVNQEPALFATTILENILYGKP--EAT-----MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLS  505 (1252)
Q Consensus       434 -~~~~~~~~~i~~v~Q~~~l~~~tv~~ni~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~LS  505 (1252)
                       .....+++.++|++|++.+|..|++||+.++..  ...     .+++..+++.+++.       .++.+..++.+.+||
T Consensus        91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS  163 (265)
T PRK14252         91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALW-------DEVKDRLGDLAFNLS  163 (265)
T ss_pred             ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCc-------hhhhHHHhCCcccCC
Confidence             334567788999999999998899999987531  111     12222333322221       133445667788999


Q ss_pred             hHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcCCCeEEEEccCccchhc-cCEEEEEeCCEEEEecC
Q 000856          506 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGT  584 (1252)
Q Consensus       506 gGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~  584 (1252)
                      ||||||++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++++.. ||++++|++|++++.|+
T Consensus       164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~  243 (265)
T PRK14252        164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA  243 (265)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence            99999999999999999999999999999999999999999998777899999999999965 89999999999999999


Q ss_pred             hHHHHh
Q 000856          585 HEELIA  590 (1252)
Q Consensus       585 ~~~l~~  590 (1252)
                      ++++..
T Consensus       244 ~~~~~~  249 (265)
T PRK14252        244 TDTIFI  249 (265)
T ss_pred             HHHHHh
Confidence            988764

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.6e-38  Score=339.32  Aligned_cols=192  Identities=30%  Similarity=0.428  Sum_probs=152.6

Q ss_pred             cEEEEeEEEECCCCCCccceeeeeEEEeCCcEEEEEcCCCCChHHHHHHHhccCCCCCceEEECCcccCCCCHHHHhccc
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nvsf~Y~~~~~~~vL~~isl~I~~Ge~vaIvG~SGSGKSTLl~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      -+-+.||+|.||+.  .|.+++++|-|.--.+||||||+|.|||||+++|.|-++|+.|+..=+           -|-+|
T Consensus       586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~i  652 (807)
T KOG0066|consen  586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRI  652 (807)
T ss_pred             eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeee
Confidence            46789999999854  478999999999999999999999999999999999999999986544           25579


Q ss_pred             EEEccccc--c-CcccHHHHhccCCCCCCHHHHHHHHHHcCchhhHhhCCCcCCCccCCCCCCCChhHHHHHHHHHHHcc
Q 000856         1089 GLVQQEPA--L-FAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 1165 (1252)
Q Consensus      1089 ~~VpQd~~--l-f~gTIreNl~~~~~~~~deei~~al~~~~l~~~i~~lp~gldt~vge~G~~LSgGQrQrlaLARALl~ 1165 (1252)
                      |+..|...  | -..|--|-|.-.. +..-++.+.+|-..|+.....       |.   .-..||||||-|+++|-.-++
T Consensus       653 G~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sHAH-------Ti---kikdLSGGQKaRValaeLal~  721 (807)
T KOG0066|consen  653 GWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASHAH-------TI---KIKDLSGGQKARVALAELALG  721 (807)
T ss_pred             echhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhccc-------eE---eeeecCCcchHHHHHHHHhcC
Confidence            99988763  2 2345555554322 244566777777777654322       21   124699999999999999999


Q ss_pred             CCCEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhccC-EEEEEeCCEEEE
Q 000856         1166 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVD-CIGVVQDGRIVE 1226 (1252)
Q Consensus      1166 ~p~ILiLDEpTS~LD~~te~~i~~~l~~~~~~~TvI~IaHrl~ti~~~D-rI~vl~~G~Ive 1226 (1252)
                      .|+||||||||.+||.++-..+-++|++.  +..||+|+|+-..|...| ..+|+++--|-|
T Consensus       722 ~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~e  781 (807)
T KOG0066|consen  722 GPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDE  781 (807)
T ss_pred             CCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhh
Confidence            99999999999999999999999999987  347999999999887664 466777655544

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.4e-39  Score=368.66  Aligned_cols=227  Identities=24%  Similarity=0.381  Sum_probs=182.7

Q ss_pred             cEEEEeEEEECCCC-CCCccccceeEEeeCCCEEEEEcCCCCcHHHHHHHHhcccC----CCCcEEEECCccccCCCHHH
Q 000856          364 NIEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD----PNAGHVLLDNVDIKTLQLRW  438 (1252)
Q Consensus       364 ~i~~~~v~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~sGsGKSTll~~l~g~~~----~~~G~i~~~g~~~~~~~~~~  438 (1252)
                      -|+++|++++|+.. ....+++|+||+|++||+++|+|+||||||||+++|+|+.+    |++|+|.++|+++...+...
T Consensus         3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~   82 (330)
T PRK15093          3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE   82 (330)
T ss_pred             eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence            37899999999642 23468999999999999999999999999999999999986    58999999999998777654


Q ss_pred             Hh----hhceEEccCCC--Cch-hcHHHHHhcCCC---CC-----CHHHHHHHHHHhcHHHHHhhCCCCcc---ccccCC
Q 000856          439 LR----DQIGLVNQEPA--LFA-TTILENILYGKP---EA-----TMAEVEAAASAANAHSFITLLPNGYS---TQVGER  500 (1252)
Q Consensus       439 ~~----~~i~~v~Q~~~--l~~-~tv~~ni~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~  500 (1252)
                      ++    +.|+||+|+|.  +.+ .||.+|+.....   ..     ...+.     ...+.+.++.+  |+.   ....+.
T Consensus        83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~~--gL~~~~~~~~~~  155 (330)
T PRK15093         83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR-----KRRAIELLHRV--GIKDHKDAMRSF  155 (330)
T ss_pred             HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHH-----HHHHHHHHHHC--CCCChHHHHhCC
Confidence            32    47999999996  333 389999864210   00     00111     11123344444  443   234667


Q ss_pred             CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCChHhHHHHHHHHHHhcC--CCeEEEEccCccchhc-cCEEEEEeCC
Q 000856          501 GVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQG  577 (1252)
Q Consensus       501 g~~LSgGqkqRv~lARal~~~~~illlDEpts~LD~~~~~~~~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G  577 (1252)
                      +.+|||||||||+|||||+.+|++||+||||++||+.++..+.+.|+++.+  |.|+|+|||+++.+.. ||+|++|++|
T Consensus       156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G  235 (330)
T PRK15093        156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG  235 (330)
T ss_pred             chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence            789999999999999999999999999999999999999999999999853  8999999999999976 8999999999


Q ss_pred             EEEEecChHHHHhcc-cchHH
Q 000856          578 QVVETGTHEELIAKA-GAYAS  597 (1252)
Q Consensus       578 ~i~~~g~~~~l~~~~-~~~~~  597 (1252)
                      +|++.|+.+++.++. ..|.+
T Consensus       236 ~ive~g~~~~i~~~p~~~y~~  256 (330)
T PRK15093        236 QTVETAPSKELVTTPHHPYTQ  256 (330)
T ss_pred             EEEEECCHHHHHhCCCCHHHH
Confidence            999999999987653 34544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1252
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		0.0
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		0.0
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		0.0
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		2e-87
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		3e-83
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		1e-86
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		3e-82
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		1e-65
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		4e-61
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		4e-65
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		2e-64
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		6e-64
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		3e-61
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		7e-59
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		7e-54
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		3e-55
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		4e-55
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		4e-55
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		9e-55
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		1e-54
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		1e-54
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		7e-54
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		7e-54
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		9e-53
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		2e-49
1jj7_A	260	Crystal Structure Of The C-Terminal Atpase Domain O		4e-45
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		2e-43
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		5e-43
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		8e-42
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		3e-40
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		2e-25
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		7e-25
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		8e-25
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		6e-24
2cbz_A	237	Structure Of The Human Multidrug Resistance Protein		3e-21
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		4e-18
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		4e-18
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		4e-18
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		6e-18
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		1e-17
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		1e-17
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		2e-17
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		2e-17
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		2e-17
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		7e-17
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		8e-17
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		8e-17
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		2e-16
2bbs_A	290	Human Deltaf508 Nbd1 With Three Solubilizing Mutati		3e-16
2pzg_A	241	Minimal Human Cftr First Nucleotide Binding Domain		3e-16
2pze_A	229	Minimal Human Cftr First Nucleotide Binding Domain		3e-16
2bbt_A	290	Human Deltaf508 Nbd1 With Two Solublizing Mutations		5e-16
1r0z_A	286	Phosphorylated Cystic Fibrosis Transmembrane Conduc		5e-16
1q3h_A	286	Mouse Cftr Nbd1 With Amp.Pnp Length = 286		5e-16
1xmi_A	291	Crystal Structure Of Human F508a Nbd1 Domain With A		7e-16
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		1e-15
1xf9_A	283	Structure Of Nbd1 From Murine Cftr- F508s Mutant Le		2e-15
1xfa_A	283	Structure Of Nbd1 From Murine Cftr- F508r Mutant Le		2e-15
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		2e-15
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		4e-15
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		4e-15
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		5e-15
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		7e-15
2pzf_A	228	Minimal Human Cftr First Nucleotide Binding Domain		8e-15
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		9e-15
3si7_A	285	The Crystal Structure Of The Nbd1 Domain Of The Mou		1e-14
1g29_1	372	Malk Length = 372		1e-14
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		2e-14
2bbo_A	291	Human Nbd1 With Phe508 Length = 291		2e-14
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		3e-14
1xmj_A	290	Crystal Structure Of Human Deltaf508 Human Nbd1 Dom		4e-13
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		2e-12
3gd7_A	390	Crystal Structure Of Human Nbd2 Complexed With N6-		4e-12
4fwi_B	334	Crystal Structure Of The Nucleotide-binding Domain		2e-11
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		6e-11
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		2e-09
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		4e-08
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		3e-07
4dbl_C	249	Crystal Structure Of E159q Mutant Of Btucdf Length		4e-08
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		5e-08
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		1e-07
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		5e-08
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		2e-07
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		6e-08
4fi3_C	249	Structure Of Vitamin B12 Transporter Btucd-F In A N		6e-08
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		1e-07
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		1e-07
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		2e-07
1l7v_C	249	Bacterial Abc Transporter Involved In B12 Uptake Le		2e-07
2qi9_C	249	Abc-Transporter Btucd In Complex With Its Periplasm		2e-07
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		2e-06
3pih_A	916	T. Maritima Uvra In Complex With Fluorescein-Modifi		2e-06
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		2e-06
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		9e-05
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		6e-04
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		9e-05
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		6e-04
1yqt_A	538	Rnase-L Inhibitor Length = 538		1e-04
2iw3_A	986	Elongation Factor 3 In Complex With Adp Length = 98		3e-04
2iw3_A	986	Elongation Factor 3 In Complex With Adp Length = 98		4e-04
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		3e-04
2iwh_A	986	Structure Of Yeast Elongation Factor 3 In Complex W		4e-04
2ix8_A	976	Model For Eef3 Bound To An 80s Ribosome Length = 97		3e-04
2ix8_A	976	Model For Eef3 Bound To An 80s Ribosome Length = 97		5e-04
2ihy_A	279	Structure Of The Staphylococcus Aureus Putative Atp		3e-04
3uwx_A	972	Crystal Structure Of Uvra-Uvrb Complex Length = 972		5e-04
2r6f_A	972	Crystal Structure Of Bacillus Stearothermophilus Uv		5e-04
2d2e_A	250	Crystal Structure Of Atypical Cytoplasmic Abc-Atpas		7e-04
2vf7_A	842	Crystal Structure Of Uvra2 From Deinococcus Radiodu		7e-04
3ux8_A	670	Crystal Structure Of Uvra Length = 670		9e-04

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  842 bits (2175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1238 (35%), Positives = 693/1238 (55%), Gaps = 23/1238 (1%)
Query: 29   LFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFG------KNQTDIH----- 77
            +F +A   D   M+ G+L A+IHG ++P+  L+FG+M + F       KN T++      
Sbjct: 38   MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 78   ----KMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVG 133
                K+  E+  YA Y+  +G  V   +Y +++ W     RQ+  +R+K+  A++ Q++G
Sbjct: 98   AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 134  FFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIA 193
            +FD     G++   ++ D   + + I +K+G F   ++TF  G ++GF   W+L L+ +A
Sbjct: 158  WFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILA 216
Query: 194  VIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDA 253
            + P +  + G++A  L+  T K   +YA AG +AE+ +A +RTV ++ G+ K L  Y++ 
Sbjct: 217  ISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNN 276
Query: 254  IQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIV 313
            ++   +LG K  +   + +G  + +   S+AL FWY    + +     G+  T  FS ++
Sbjct: 277  LEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLI 336
Query: 314  GGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFS 373
            G  S+GQ+  N+ AF+  + A Y++ +II  KPSI     +G   D + GN+EFKN+ FS
Sbjct: 337  GAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFS 396
Query: 374  YPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKT 433
            YPSR +V I +  ++                       L++R YDP  G V +D  DI+T
Sbjct: 397  YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456
Query: 434  LQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGY 493
            + +R+LR+ IG+V+QEP LFATTI ENI YG+                 + FI  LP+ +
Sbjct: 457  INVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQF 516
Query: 494  STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR 553
             T VGERG QLSGGQKQRIAIARA+++NPKILLLDEATSALD  SE++VQ ALD+   GR
Sbjct: 517  DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGR 576
Query: 554  TTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANP 613
            TT+V+AHRLST+RN D +A    G +VE G H+EL+ + G Y  L+  Q      +  N 
Sbjct: 577  TTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNE 636
Query: 614  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGADGRIEMVSNAETDRKNPAPDGYF 673
                                               G   +   +S  E   ++  P   F
Sbjct: 637  --ACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDED-VPPASF 693
Query: 674  LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKE-FVF 732
             R+LKLN+ EWPY ++G   ++++G + P F+++ + ++ VF    P   +R+    F  
Sbjct: 694  WRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSL 753
Query: 733  IYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAAR 792
            +++  G+ + + + +Q + F   GE LT R+R M+  ++LR +V WFD+ ++ +  +  R
Sbjct: 754  LFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTR 813
Query: 793  LATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQL 852
            LA DAA VK A   R++VI QN+ +L T  I++ I  W+++LL+L   P++ +A   +  
Sbjct: 814  LANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMK 873
Query: 853  SLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 912
             L G A    K    +  IA E + N RTV +   + K  +++   L++P    ++++  
Sbjct: 874  MLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHV 933
Query: 913  AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPE 972
             GI F  +Q  ++ S A    +G +LV + + TF             A +V +  S AP+
Sbjct: 934  FGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPD 993
Query: 973  IIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFN 1032
              +   S   +   ++++  ID           + G ++   V F YP+RP + V +  +
Sbjct: 994  YAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLS 1053
Query: 1033 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQ 1092
            L ++ GQ+ ALVG+SG GKS+V+ L+ERFYDP AG V +DGK+I++LN++ LR ++G+V 
Sbjct: 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVS 1113
Query: 1093 QEPALFAASIFDNIAYGKEGXXXX--XXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLS 1150
            QEP LF  SI +NIAYG                    H F+ +LP+ Y T VG++G QLS
Sbjct: 1114 QEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLS 1173
Query: 1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 1210
            GGQKQRIAIARA+++ P ILLLDEATSALD ESE V+QEAL++   GRT +++AHRLSTI
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTI 1233
Query: 1211 RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            +  D I V+Q+G++ E G+H +L+++  G Y  ++ +Q
Sbjct: 1234 QNADLIVVIQNGKVKEHGTHQQLLAQK-GIYFSMVSVQ 1270

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score =  841 bits (2172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1238 (35%), Positives = 693/1238 (55%), Gaps = 23/1238 (1%)
Query: 29   LFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFG------KNQTDIH----- 77
            +F +A   D   M+ G+L A+IHG ++P+  L+FG+M + F       KN T++      
Sbjct: 38   MFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKR 97
Query: 78   ----KMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVG 133
                K+  E+  YA Y+  +G  V   +Y +++ W     RQ+  +R+K+  A++ Q++G
Sbjct: 98   AMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIG 157
Query: 134  FFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIA 193
            +FD     G++   ++ D   + + I +K+G F   ++TF  G ++GF   W+L L+ +A
Sbjct: 158  WFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILA 216
Query: 194  VIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDA 253
            + P +  + G++A  L+  T K   +YA AG +AE+ +A +RTV ++ G+ K L  Y++ 
Sbjct: 217  ISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNN 276
Query: 254  IQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIV 313
            ++   +LG K  +   + +G  + +   S+AL FWY    + +     G+  T  FS ++
Sbjct: 277  LEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLI 336
Query: 314  GGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFS 373
            G  S+GQ+  N+ AF+  + A Y++ +II  KPSI     +G   D + GN+EFKN+ FS
Sbjct: 337  GAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFS 396
Query: 374  YPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKT 433
            YPSR +V I +  ++                       L++R YDP  G V +D  DI+T
Sbjct: 397  YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456
Query: 434  LQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFITLLPNGY 493
            + +R+LR+ IG+V+QEP LFATTI ENI YG+                 + FI  LP+ +
Sbjct: 457  INVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQF 516
Query: 494  STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR 553
             T VGERG QLSGGQKQRIAIARA+++NPKILLLDEATSALD  SE++VQ ALD+   GR
Sbjct: 517  DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGR 576
Query: 554  TTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANP 613
            TT+V+AHRLST+RN D +A    G +VE G H+EL+ + G Y  L+  Q      +  N 
Sbjct: 577  TTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNE 636
Query: 614  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGADGRIEMVSNAETDRKNPAPDGYF 673
                                               G   +   +S  E   ++  P   F
Sbjct: 637  --ACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDED-VPPASF 693
Query: 674  LRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKE-FVF 732
             R+LKLN+ EWPY ++G   ++++G + P F+++ + ++ VF    P   +R+    F  
Sbjct: 694  WRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSL 753
Query: 733  IYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAAR 792
            +++  G+ + + + +Q + F   GE LT R+R M+  ++LR +V WFD+ ++ +  +  R
Sbjct: 754  LFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTR 813
Query: 793  LATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQL 852
            LA DAA VK A   R++VI QN+ +L T  I++ I  W+++LL+L   P++ +A   +  
Sbjct: 814  LANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMK 873
Query: 853  SLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 912
             L G A    K    +  IA E + N RTV +   + K  +++   L++P    ++++  
Sbjct: 874  MLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHV 933
Query: 913  AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPE 972
             GI F  +Q  ++ S A    +G +LV + + TF             A +V +  S AP+
Sbjct: 934  FGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPD 993
Query: 973  IIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFN 1032
              +   S   +   ++++  ID           + G ++   V F YP+RP + V +  +
Sbjct: 994  YAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLS 1053
Query: 1033 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQ 1092
            L ++ GQ+ ALVG+SG GKS+V+ L+ERFYDP AG V +DGK+I++LN++ LR ++G+V 
Sbjct: 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVS 1113
Query: 1093 QEPALFAASIFDNIAYGKEGXXXX--XXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLS 1150
            QEP LF  SI +NIAYG                    H F+ +LP+ Y T VG++G QLS
Sbjct: 1114 QEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLS 1173
Query: 1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 1210
            GGQKQRIAIARA+++ P ILLLDEATSALD ESE V+QEAL++   GRT +++AHRLSTI
Sbjct: 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTI 1233
Query: 1211 RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            +  D I V+Q+G++ E G+H +L+++  G Y  ++ +Q
Sbjct: 1234 QNADLIVVIQNGKVKEHGTHQQLLAQK-GIYFSMVSVQ 1270

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score =  691 bits (1784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1265 (32%), Positives = 645/1265 (50%), Gaps = 48/1265 (3%)
Query: 23   SLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHK---- 78
            S+P  QL+ +    +  L+  G+L AVI G+ +P+  +L G++   F   Q  I+     
Sbjct: 61   SIP--QLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGST 118
Query: 79   ------------MTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEA 126
                          H+V      +  + + +  +    + C++Y  E+  + LR++++++
Sbjct: 119  FLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKS 178
Query: 127  VLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWR 186
            +L+Q++ +FDT+  +G +   +  +   V++   +K+G    YLS F+ G +V F  +W+
Sbjct: 179  ILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQ 237
Query: 187  LALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKA 246
            L L+ +AV P  A  G   A +++    +    YA AG + E+ I+ +RTV S  G    
Sbjct: 238  LTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYE 297
Query: 247  LNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFT 306
            L  YS A++   K G   G+  G+  G       +S+AL F+    ++ +G  + G   T
Sbjct: 298  LERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLT 357
Query: 307  AIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIE 366
               S ++G M+LG +   L      + A   + E++ +KP I      GR   ++ G+I 
Sbjct: 358  TFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDIT 417
Query: 367  FKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLL 426
             +NV F+YPSRPDV I R  ++                       L+ R+YD   G + +
Sbjct: 418  VENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITI 477
Query: 427  DNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXXXXXHSFI 486
            D VD++ + L +LR  + +V+QEPALF  TI ENI  GK                   FI
Sbjct: 478  DGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFI 537
Query: 487  TLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEAL 546
              LPNGY+T VG+RG QLSGGQKQRIAIARA+++NPKILLLDEATSALDA SE IVQ+AL
Sbjct: 538  KTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQAL 597
Query: 547  DRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVR 606
            D+   GRTT+++AHRLSTIRN D +   + GQVVE G H  L+A+ G Y  L+  Q    
Sbjct: 598  DKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTFTD 657
Query: 607  NRDFA--------NPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGA--DGRIEM 656
              D A        N                                    G   D + E 
Sbjct: 658  AVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEER 717
Query: 657  VSNAETDR------KNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMAC 710
            +      R      +N A       +L    P      +G   + + GFI PT+++    
Sbjct: 718  IGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTS 777
Query: 711  MIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAA 770
             + VF   NPA    +   +  +++       +   +  +F  I  E+LT  +R  +   
Sbjct: 778  FMNVF-AGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRN 836
Query: 771  ILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEW 830
            +L   +G+FD  ++ S  ++ RLATD  ++++AI  R S ++  + S++    +AF   W
Sbjct: 837  VLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGW 896
Query: 831  RVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKA---HAKTSMIAGEGVSNIRTVAAFNA 887
            +++LLI+   P++    F Q L  + F G   K+    A +  IA E + N+RTV A   
Sbjct: 897  QMALLIIAILPIVA---FGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAR 953
Query: 888  QNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFS 947
            ++     FC +L +P  + ++ +   G+ +G +   L+         G+ L+     T  
Sbjct: 954  EDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQ 1013
Query: 948  --KXXXXXXXXXXTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVET 1005
              +          + +++    S  PE  +   + G +F  L + ++ID      E  + 
Sbjct: 1014 PMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEK-KK 1072
Query: 1006 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT 1065
            + G++  ++V FAYP RP++ + K  +  +  GQ+ ALVG SG GKS+V+AL+ERFYD  
Sbjct: 1073 LYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132
Query: 1066 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKE--GXXXXXXXXXXX 1123
             G++ IDG +I+ LN +  R +I +V QEP LF  SI +NI YG +              
Sbjct: 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAAR 1192
Query: 1124 XXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
                H F++ LP  ++T VG+RG QLSGGQKQRIAIARA+++NP ILLLDEATSALD ES
Sbjct: 1193 LANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252
Query: 1184 ECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 1243
            E V+QEAL+R   GRT +++AHRL+T+   DCI VV +G I+E+G+H++L+S   GAY +
Sbjct: 1253 EKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYK 1311
Query: 1244 LLQLQ 1248
            L Q Q
Sbjct: 1312 LTQKQ 1316

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score =  320 bits (821), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 195/520 (37%), Positives = 294/520 (56%), Gaps = 13/520 (2%)
Query: 95  LIVCFSSYAEIACWMY--TGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDT 152
           + +C ++   I  ++   +G+R V+ LR     ++L+Q+V FFD   RTG+++  +S+DT
Sbjct: 71  VFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFD-KTRTGELINRLSSDT 129
Query: 153 LLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGL 212
            L+  +++E + + +   +    G+ + F  +  LA   ++V+P ++    +Y   L  L
Sbjct: 130 ALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKL 189
Query: 213 TSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGL 272
           T  +++S A A  +AE+ I  VRTV ++  E   +  Y+  + + ++L  K   A+    
Sbjct: 190 TKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFF 249
Query: 273 GCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGK 332
           G T     +    V +  G+ + +     G+  + +  A   G+S+G   S      KG 
Sbjct: 250 GATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGL 309
Query: 333 AAGYKLMEIIKQKPSIIQDPTN-GRCLDE--VNGNIEFKNVTFSYPSRPDVIIFRDFSIF 389
            AG +L E+++++P +   P N G  L+E    G +EFKNV F+YP+RP+V IF+DFS+ 
Sbjct: 310 GAGGRLWELLEREPKL---PFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLS 366
Query: 390 FPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQE 449
            P                    L+ R YDP +G + LD  DI+ L   WLR +IG V+QE
Sbjct: 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQE 426
Query: 450 PALFATTILENILYG--KPXXXXXXXXXXXXXXXXH-SFITLLPNGYSTQVGERGVQLSG 506
           P LF+ +I ENI YG   P                  +FI   P G++T VGE+GV LSG
Sbjct: 427 PILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSG 486
Query: 507 GQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIR 566
           GQKQRIAIARA+LKNPKILLLDEATSALDA +E +VQEALDRLM GRT +V+AHRLSTI+
Sbjct: 487 GQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK 546
Query: 567 NVDTVAVIQQGQVVETGTHEELIAKA-GAYASLIRFQEMV 605
           N + VAV+ QG++ E G HEEL++K  G Y  L+  Q  +
Sbjct: 547 NANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFI 586

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score =  307 bits (786), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 201/586 (34%), Positives = 307/586 (52%), Gaps = 23/586 (3%)
Query: 675  RLLKLNAPEWPYSIMGAIGSV-LSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFI 733
            +LL L  PE    +  A+G + +S  I  +    +  +I+V Y                 
Sbjct: 9    KLLGLAYPER-RRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLG 67
Query: 734  YIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARL 793
                 L    A  I+ Y     G+ +  R+R  + ++ILR EV +FD+       +  RL
Sbjct: 68   LSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGE--LINRL 125
Query: 794  ATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLS 853
            ++D A +  ++ + +S  L+          + F V   ++  +L   P + +        
Sbjct: 126  SSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRY 185
Query: 854  LKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ----NKILSLFCHELRVPQSQTLRR 909
            L+     T  + A+ + +A E + N+RTV AF  +     K  S   H +++ + +   R
Sbjct: 186  LRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFAR 245
Query: 910  SLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSL 969
               AG  FG +  + +     +L+ G  L+G    T  +             S+    S 
Sbjct: 246  ---AG-FFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSF 301
Query: 970  APEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPV----ETIRGEIELRHVDFAYPSRPDV 1025
              E+++G  + G ++  L+R    +P  P  E V    ++ +G +E ++V FAYP+RP+V
Sbjct: 302  YSELMKGLGAGGRLWELLER----EPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEV 357
Query: 1026 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR 1085
             +F+DF+L I +G   ALVG SGSGKS+V++L+ R YDP +G + +DG DIR+LN   LR
Sbjct: 358  PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417
Query: 1086 LKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXH---GFVSALPNAYKTPV 1142
             KIG V QEP LF+ SI +NIAYG +                     F+   P  + T V
Sbjct: 418  SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 1143 GERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVL 1202
            GE+GV LSGGQKQRIAIARA+LKNP ILLLDEATSALDAE+E ++QEAL+RLM GRT ++
Sbjct: 478  GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLV 537
Query: 1203 VAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            +AHRLSTI+  + + V+  G+I E G H EL+S+P+G Y +L+  Q
Sbjct: 538  IAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 583

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score =  318 bits (816), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 209/573 (36%), Positives = 316/573 (55%), Gaps = 23/573 (4%)
Query: 43  FGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQT-DIHKMTHEVCKYALYFVYLGLIVCFSS 101
           F ++ +VI  S+   FFL  G++++    N T D       +C   L  V+L    C ++
Sbjct: 58  FLTMSSVISMSA--PFFL--GKIIDVIYTNPTVDYSDNLTRLC-LGLSAVFL----CGAA 108
Query: 102 YAEIACWMY--TGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAI 159
              I  ++   +G+R V+ LR     ++L+Q+V FFD   RTG+++  +S+DT L+  ++
Sbjct: 109 ANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFD-KTRTGELINRLSSDTALLGRSV 167
Query: 160 SEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRES 219
           +E + + +   +    G+ + F  +  LA   ++V+P ++    +Y   L  LT  +++S
Sbjct: 168 TENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDS 227
Query: 220 YANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIA 279
            A A  +AE+ I  VRTV ++  E   +  Y+  + + ++L  K   A+    G T    
Sbjct: 228 LAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSG 287
Query: 280 CMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLM 339
            +    V +  G+ + +     G+  + +  A   G+S+G   S      KG  AG +L 
Sbjct: 288 NLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLW 347
Query: 340 EIIKQKPSIIQDPTN-GRCLDE--VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXX 396
           E+++++P +   P N G  L+E    G +EFKNV F+YP+RP+V IF+DFS+  P     
Sbjct: 348 ELLEREPKL---PFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVT 404
Query: 397 XXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATT 456
                          L+ R YDP +G + LD  DI+ L   WLR +IG V+QEP LF+ +
Sbjct: 405 ALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCS 464
Query: 457 ILENILYG--KPXXXXXXXXXXXXXXXXH-SFITLLPNGYSTQVGERGVQLSGGQKQRIA 513
           I ENI YG   P                  +FI   P G++T VGE+GV LSGGQKQRIA
Sbjct: 465 IAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIA 524
Query: 514 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAV 573
           IARA+LKNPKILLLDEATSALDA +E +VQEALDRLM GRT +V+AH LSTI+N + VAV
Sbjct: 525 IARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAV 584
Query: 574 IQQGQVVETGTHEELIAKA-GAYASLIRFQEMV 605
           + QG++ E G HEEL++K  G Y  L+  Q  +
Sbjct: 585 LDQGKITEYGKHEELLSKPNGIYRKLMNKQSFI 617

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score =  303 bits (777), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 196/582 (33%), Positives = 305/582 (52%), Gaps = 15/582 (2%)
Query: 675  RLLKLNAPEWPYSIMGAIGSV-LSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFI 733
            +LL L  PE    +  A+G + +S  I  +    +  +I+V Y                 
Sbjct: 40   KLLGLAYPER-RRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLG 98
Query: 734  YIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARL 793
                 L    A  I+ Y     G+ +  R+R  + ++ILR EV +FD+       +  RL
Sbjct: 99   LSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGE--LINRL 156
Query: 794  ATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLS 853
            ++D A +  ++ + +S  L+          + F V   ++  +L   P + +        
Sbjct: 157  SSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRY 216
Query: 854  LKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ----NKILSLFCHELRVPQSQTLRR 909
            L+     T  + A+ + +A E + N+RTV AF  +     K  S   H +++ + +   R
Sbjct: 217  LRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFAR 276
Query: 910  SLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSL 969
               AG  FG +  + +     +L+ G  L+G    T  +             S+    S 
Sbjct: 277  ---AG-FFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSF 332
Query: 970  APEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFK 1029
              E+++G  + G ++  L+R  ++  ++      ++ +G +E ++V FAYP+RP+V +F+
Sbjct: 333  YSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQ 392
Query: 1030 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089
            DF+L I +G   ALVG SGSGKS+V++L+ R YDP +G + +DG DIR+LN   LR KIG
Sbjct: 393  DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 452
Query: 1090 LVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXH---GFVSALPNAYKTPVGERG 1146
             V QEP LF+ SI +NIAYG +                     F+   P  + T VGE+G
Sbjct: 453  TVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKG 512
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHR 1206
            V LSGGQKQRIAIARA+LKNP ILLLDEATSALDAE+E ++QEAL+RLM GRT +++AH 
Sbjct: 513  VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHH 572
Query: 1207 LSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            LSTI+  + + V+  G+I E G H EL+S+P+G Y +L+  Q
Sbjct: 573  LSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 614

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score =  248 bits (634), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 169/544 (31%), Positives = 273/544 (50%), Gaps = 26/544 (4%)
Query: 67  NGFGKNQTDIHKMTHEVCKYALYFVYLGLIVC--FSSYAEIACWMYTGERQVSTLRKKYL 124
           +GFGK        T       +  V +GL++    +SY    C  +   + V T+R++  
Sbjct: 54  DGFGK--------TDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLF 105
Query: 125 EAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSA 184
             ++   V FFD  + TG ++  ++ D+  V  + S  +   +   ++ +   ++ F  +
Sbjct: 106 GHMMGMPVAFFDKQS-TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 164
Query: 185 WRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGES 244
           W+L+++ + + P ++ A  + +     ++   + +       AEQ +   + V  + G+ 
Sbjct: 165 WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQE 224
Query: 245 KALNSYSDAIQNTLKL-GYKAGMAKGLGLGCTYGIACMSWALVFWYAGVF--IRNGVTDG 301
                + D + N ++L G K   A  +       IA ++ A V  YA  F  + + +T G
Sbjct: 225 VETKRF-DKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVL-YAASFPSVMDSLTAG 282
Query: 302 GKAFTAIFSAIVGGMSLGQSFSNLGA-FSKGKAAGYKLMEIIKQKPSIIQDPTNG-RCLD 359
               T +FS+++  M   +S +N+ A F +G AA   L  I+  +    Q+   G R +D
Sbjct: 283 --TITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE----QEKDEGKRVID 336
Query: 360 EVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDP 419
              G++EF+NVTF+YP R +V   R+ ++  P                    LI RFYD 
Sbjct: 337 RATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI 395
Query: 420 NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXX 479
           + GH+L+D  D++   L  LR+Q+ LV+Q   LF  T+  NI Y +              
Sbjct: 396 DEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR 455
Query: 480 XX-XHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 538
                 FI  + NG  T +GE GV LSGGQ+QRIAIARA+L++  IL+LDEATSALD  S
Sbjct: 456 MAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
Query: 539 ESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASL 598
           E  +Q ALD L   RT++V+AHRLSTI   D + V++ G +VE GTH EL+A+ G YA L
Sbjct: 516 ERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL 575
Query: 599 IRFQ 602
            + Q
Sbjct: 576 HKMQ 579

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score =  233 bits (595), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 157/521 (30%), Positives = 267/521 (51%), Gaps = 14/521 (2%)
Query: 732  FIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAA 791
             + IG  +   +   I  Y  S +   +   +RR +   ++   V +FD++   + L  +
Sbjct: 69   LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLL--S 126
Query: 792  RLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQ 851
            R+  D+  V S+ +  +  +++   S++  FI+ F   W++S++++   P++ +A     
Sbjct: 127  RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 186
Query: 852  LSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQ---NKILSLFCHELRVPQSQTLR 908
               +  + +      + +  A + +   + V  F  Q    K      +++R+   Q ++
Sbjct: 187  KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRL---QGMK 243
Query: 909  RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVS 968
                + I   I Q     + A +L+           T                 +    +
Sbjct: 244  MVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTN 303
Query: 969  LAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVF 1028
            +  +  RG  +  ++F+ LD        D     ++   G++E R+V F YP R +V   
Sbjct: 304  VNAQFQRGMAACQTLFAILDSE---QEKDEGKRVIDRATGDLEFRNVTFTYPGR-EVPAL 359
Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088
            ++ NL+I AG++ ALVG SGSGKS++ +LI RFYD   G +++DG D+R   L SLR ++
Sbjct: 360  RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419
Query: 1089 GLVQQEPALFAASIFDNIAYGK-EGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGV 1147
             LV Q   LF  ++ +NIAY + E                  F++ + N   T +GE GV
Sbjct: 420  ALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGV 479
Query: 1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 1207
             LSGGQ+QRIAIARA+L++  IL+LDEATSALD ESE  +Q AL+ L + RT++++AHRL
Sbjct: 480  LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 539
Query: 1208 STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            STI   D I VV+DG IVE+G+HSEL+++  G Y++L ++Q
Sbjct: 540  STIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQ 579

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score =  246 bits (629), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 154/461 (33%), Positives = 239/461 (51%), Gaps = 3/461 (0%)
Query: 789  VAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANF 848
            V +R+  D    K  I   +  I  +  +++ +  + F ++ +++L  L  +P  +L  +
Sbjct: 120  VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 849  AQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR 908
                 L+    + ++A A+      E V  I  V +F  ++     F  +     ++ L+
Sbjct: 180  VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239
Query: 909  RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVS 968
             +      F            +++  G +L   G  T                 +   V+
Sbjct: 240  HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVA 299
Query: 969  LAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVF 1028
                + +   S+  VF  +D    I  +   A+P+E  +G I++ HV F Y    +  + 
Sbjct: 300  SFTTLTQSFASMDRVFQLIDEDYDI-KNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPIL 357
Query: 1029 KDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088
            KD NL I  G++ A VG SG GKS++I LI RFYD T+G+++IDG +I+     SLR +I
Sbjct: 358  KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417
Query: 1089 GLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQ 1148
            GLVQQ+  LF+ ++ +NI  G+                 H F+  LP  Y T VGERGV+
Sbjct: 418  GLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477
Query: 1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLS 1208
            LSGGQKQR++IAR  L NP IL+LDEATSALD ESE ++QEAL+ L + RTT++VAHRLS
Sbjct: 478  LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537
Query: 1209 TIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 1249
            TI   D I V+++G IVE G+H EL+++  GAY  L  +Q+
Sbjct: 538  TITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQN 577

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score =  244 bits (623), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 160/525 (30%), Positives = 265/525 (50%), Gaps = 19/525 (3%)
Query: 732  FIYIGAGLYAVVAYL--IQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLV 789
            ++ I   +YA+ + L  +Q      + +++  R+R+ +   + R  VG+FD   H    +
Sbjct: 79   YMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGD--I 136
Query: 790  AARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFA 849
             +R+  D  ++ + + + I      + +L  + I+ F V   +SL+ L   PL VL    
Sbjct: 137  ISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQI 196
Query: 850  QQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRR 909
                 + +  +  +   + + I  E +S +  +  F  + K +  F    RV +S  LR+
Sbjct: 197  VSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFD---RVNES--LRK 251
Query: 910  -----SLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVA 964
                  + +G+L  +     +   ALI  +G  L  K + T                 + 
Sbjct: 252  VGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLN 311
Query: 965  ETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPD 1024
            E  +    I     S   +F  LD     + DDPDA  +  +RGEIE ++V F+Y  +  
Sbjct: 312  ELSNQFNMIQMALASAERIFEILDLEE--EKDDPDAVELREVRGEIEFKNVWFSYDKKKP 369
Query: 1025 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 1084
            V+  KD    I+ GQ  ALVG +GSGK++++ L+ RFYD   G++++DG DIR++   SL
Sbjct: 370  VL--KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 1085 RLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGE 1144
            R  IG+V Q+  LF+ ++ +N+ YG  G                 F+  LP  Y+T + +
Sbjct: 428  RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTD 487
Query: 1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVA 1204
             G  LS GQ+Q +AI RA L NP IL+LDEATS +D ++E  +Q A+ +LM G+T++++A
Sbjct: 488  NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIA 547
Query: 1205 HRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 1249
            HRL+TI+  D I V++DG IVE G H EL+ +  G Y  L   Q+
Sbjct: 548  HRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQY 591

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score =  243 bits (619), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 167/544 (30%), Positives = 270/544 (49%), Gaps = 26/544 (4%)
Query: 67  NGFGKNQTDIHKMTHEVCKYALYFVYLGLIVC--FSSYAEIACWMYTGERQVSTLRKKYL 124
           +GFGK        T       +  V +GL++    +SY    C  +   + V T+R++  
Sbjct: 54  DGFGK--------TDRSVLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLF 105
Query: 125 EAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSA 184
             ++   V FFD  + TG ++  ++ D+  V  + S  +   +   ++ +   ++ F  +
Sbjct: 106 GHMMGMPVSFFDKQS-TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 164
Query: 185 WRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGES 244
           W+L+++ I + P ++ A  + +     ++   + +       AEQ +   + V  + G+ 
Sbjct: 165 WQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQE 224
Query: 245 KALNSYSDAIQNTLKL-GYKAGMAKGLGLGCTYGIACMSWALVFWYAGVF--IRNGVTDG 301
                + D + N ++L G K   A  +       IA ++ A V  YA  F  + + +T G
Sbjct: 225 VETKRF-DKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVL-YAASFPSVMDSLTAG 282
Query: 302 GKAFTAIFSAIVGGMSLGQSFSNLGA-FSKGKAAGYKLMEIIKQKPSIIQDPTNG-RCLD 359
               T +FS+++  M   +S +N+ A F +G AA   L  I+  +    Q+   G R ++
Sbjct: 283 --TITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSE----QEKDEGKRVIE 336
Query: 360 EVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDP 419
              G++EF+NVTF+YP R DV   R+ ++  P                    LI RFYD 
Sbjct: 337 RATGDVEFRNVTFTYPGR-DVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI 395
Query: 420 NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPXXXXXXXXXXXXX 479
           + G +L+D  D++   L  LR+Q+ LV+Q   LF  T+  NI Y +              
Sbjct: 396 DEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAAR 455
Query: 480 XX-XHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 538
                 FI  + NG  T +GE GV LSGGQ+QRIAIARA+L++  IL+LDEATSALD  S
Sbjct: 456 MAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
Query: 539 ESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASL 598
           E  +Q ALD L   RT++V+AHRLSTI   D + V++ G +VE GTH +L+   G YA L
Sbjct: 516 ERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQL 575
Query: 599 IRFQ 602
            + Q
Sbjct: 576 HKMQ 579

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score =  234 bits (597), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 155/518 (29%), Positives = 262/518 (50%), Gaps = 8/518 (1%)
Query: 732  FIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAA 791
             + IG  +   +   +  Y  S +   +   +RR +   ++   V +FD++   + L  +
Sbjct: 69   LVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLL--S 126
Query: 792  RLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQ 851
            R+  D+  V S+ +  +  +++   S++  FI+ F   W++S++++   P++ +A     
Sbjct: 127  RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVS 186
Query: 852  LSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 911
               +  + +      + +  A + +   + V  F  Q      F       + Q ++   
Sbjct: 187  KRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVS 246
Query: 912  TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAP 971
             + I   I Q     + A +L+           T                 +    ++  
Sbjct: 247  ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNA 306
Query: 972  EIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDF 1031
            +  RG  +  ++F+ LD        D     +E   G++E R+V F YP R DV   ++ 
Sbjct: 307  QFQRGMAACQTLFTILDSE---QEKDEGKRVIERATGDVEFRNVTFTYPGR-DVPALRNI 362
Query: 1032 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 1091
            NL+I AG++ ALVG SGSGKS++ +LI RFYD   G++++DG D+R   L SLR ++ LV
Sbjct: 363  NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALV 422
Query: 1092 QQEPALFAASIFDNIAYGK-EGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLS 1150
             Q   LF  ++ +NIAY + E                  F++ + N   T +GE GV LS
Sbjct: 423  SQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482
Query: 1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTI 1210
            GGQ+QRIAIARA+L++  IL+LDEATSALD ESE  +Q AL+ L + RT++++AHRLSTI
Sbjct: 483  GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI 542
Query: 1211 RGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
               D I VV+DG IVE+G+H++L+    G Y++L ++Q
Sbjct: 543  EKADEIVVVEDGVIVERGTHNDLLEHR-GVYAQLHKMQ 579

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score =  226 bits (575), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 176/589 (29%), Positives = 292/589 (49%), Gaps = 34/589 (5%)
Query: 26  FFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVN-GFGKNQTDIHKMTHEVC 84
           F +L+++   Y   L++  ++  VI+ ++      L   +++ GFG  +++  ++     
Sbjct: 13  FKRLWTYIRLYKAGLVV-STIALVINAAADTYMISLLKPLLDEGFGNAESNFLRI----- 66
Query: 85  KYALYFVYLGLIVC--FSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTG 142
              L F+ LGL+     S +A   C  +     V  +R++     +   V FFD ++ TG
Sbjct: 67  ---LPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQES-TG 122
Query: 143 DIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAG 202
            ++  ++ D+  V  A S  + + +   ++ +  L + F ++W+L+L+ I V P +AFA 
Sbjct: 123 GLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAI 182
Query: 203 GLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVG---ESKALNSYSDAI-QNTL 258
              +     ++   + +  +    AEQ +   + V SY G   E K  +  S+++ Q T+
Sbjct: 183 SFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTM 242
Query: 259 KLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGV-FIRNGVTDGGKAFTAIFSAIVGGMS 317
           KL      A+ +       IA ++   V + A V  IR  +T G   FT +FSA+ G M 
Sbjct: 243 KLVS----AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPG--TFTVVFSAMFGLMR 296
Query: 318 LGQSFSNLGA-FSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDE-VNGNIEFKNVTFSYP 375
             ++ +++ + F +G AA   L  ++  +     +  NG+   E VNG ++ K+VTF+Y 
Sbjct: 297 PLKALTSVTSEFQRGMAACQTLFGLMDLET----ERDNGKYEAERVNGEVDVKDVTFTYQ 352
Query: 376 SRPD-VIIFRDFSIFFPXXXXXXXXXXXXXXXXXXXXLIERFYDPNAGHVLLDNVDIKTL 434
            +    +    FSI  P                    L  RFYD ++G + LD  D++  
Sbjct: 353 GKEKPALSHVSFSI--PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDY 410
Query: 435 QLRWLRDQIGLVNQEPALFATTILENILYG-KPXXXXXXXXXXXXXXXXHSFITLLPNGY 493
           +L  LR    LV+Q   LF  TI  NI Y  +                   FI  +P G 
Sbjct: 411 KLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGL 470
Query: 494 STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR 553
            T +GE G  LSGGQ+QR+AIARA+L++  +L+LDEATSALD  SE  +Q ALD L   +
Sbjct: 471 DTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNK 530
Query: 554 TTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 602
           T +V+AHRLSTI   D + V+ +G+++E G H +L+A+ GAYA L R Q
Sbjct: 531 TVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score =  209 bits (532), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 150/506 (29%), Positives = 253/506 (50%), Gaps = 20/506 (3%)
Query: 750  YFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRIS 809
            Y  S +  N+  ++RR +    +   V +FD+E     L  +R+  D+  V  A +  + 
Sbjct: 87   YCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLL--SRITYDSEQVAGATSRALV 144
Query: 810  VILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTS 869
             I++   S++    + F   W++SL+++   P++  A        +  + +   A    +
Sbjct: 145  SIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVT 204
Query: 870  MIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR----RSLTAGILFGISQFALH 925
              A + +   + V ++  Q      F       + QT++    +S+   ++  I+  AL 
Sbjct: 205  SSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALF 264
Query: 926  ASEALILWYGVHLVGKGVS--TFSKXXXXXXXXXXTANSVAETVSLAPEIIRGGESVGSV 983
            A   ++    V  +   ++  TF+              ++    S+  E  RG  +  ++
Sbjct: 265  A---VLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKAL---TSVTSEFQRGMAACQTL 318
Query: 984  FSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQAL 1043
            F  +D  T  D    +AE V    GE++++ V F Y  +    +    +  I  G++ AL
Sbjct: 319  FGLMDLETERDNGKYEAERVN---GEVDVKDVTFTYQGKEKPAL-SHVSFSIPQGKTVAL 374
Query: 1044 VGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF 1103
            VG SGSGKS++  L  RFYD  +G + +DG D+R   L +LR    LV Q   LF  +I 
Sbjct: 375  VGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIA 434
Query: 1104 DNIAYGKEGX-XXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162
            +NIAY  EG                  F+  +P    T +GE G  LSGGQ+QR+AIARA
Sbjct: 435  NNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARA 494
Query: 1163 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDG 1222
            +L++  +L+LDEATSALD ESE  +Q AL+ L + +T +++AHRLSTI   D I VV +G
Sbjct: 495  LLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEG 554
Query: 1223 RIVEQGSHSELVSRPDGAYSRLLQLQ 1248
             I+E+G H++L+++ DGAY++L ++Q
Sbjct: 555  EIIERGRHADLLAQ-DGAYAQLHRIQ 579

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score =  214 bits (544), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 111/241 (46%), Positives = 152/241 (63%), Gaps = 3/241 (1%)
Query: 1009 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            +I  R++ F Y P  P  V+  + NL I+ G+   +VG SGSGKS++  LI+RFY P  G
Sbjct: 3    DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 1127
            +V+IDG D+   +   LR ++G+V Q+  L   SI DNI+    G               
Sbjct: 61   QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
            H F+S L   Y T VGE+G  LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 121  HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1188 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247
               + ++ +GRT +++AHRLST++  D I V++ G+IVEQG H EL+S P+  YS L QL
Sbjct: 181  MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 1248 Q 1248
            Q
Sbjct: 241  Q 241

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score =  213 bits (543), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 111/241 (46%), Positives = 152/241 (63%), Gaps = 3/241 (1%)
Query: 1009 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            +I  R++ F Y P  P  V+  + NL I+ G+   +VG SGSGKS++  LI+RFY P  G
Sbjct: 1    DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 1127
            +V+IDG D+   +   LR ++G+V Q+  L   SI DNI+    G               
Sbjct: 59   QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
            H F+S L   Y T VGE+G  LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 119  HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 1188 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247
               + ++ +GRT +++AHRLST++  D I V++ G+IVEQG H EL+S P+  YS L QL
Sbjct: 179  MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 1248 Q 1248
            Q
Sbjct: 239  Q 239

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score =  213 bits (543), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 111/241 (46%), Positives = 152/241 (63%), Gaps = 3/241 (1%)
Query: 1009 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            +I  R++ F Y P  P  V+  + NL I+ G+   +VG SGSGKS++  LI+RFY P  G
Sbjct: 7    DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 1127
            +V+IDG D+   +   LR ++G+V Q+  L   SI DNI+    G               
Sbjct: 65   QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
            H F+S L   Y T VGE+G  LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 125  HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 1188 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247
               + ++ +GRT +++AHRLST++  D I V++ G+IVEQG H EL+S P+  YS L QL
Sbjct: 185  MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 1248 Q 1248
            Q
Sbjct: 245  Q 245

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score =  212 bits (540), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 117/268 (43%), Positives = 166/268 (61%), Gaps = 4/268 (1%)
Query: 982  SVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQ 1041
            ++F  L   T +  D P A P+   +G IE  +V F+Y    +    +D +  +  GQ+ 
Sbjct: 27   NMFDLLKEETEV-KDLPGAGPLRFQKGRIEFENVHFSYADGRET--LQDVSFTVMPGQTL 83
Query: 1042 ALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAAS 1101
            ALVG SG+GKS+++ L+ RFYD ++G + IDG+DI ++   SLR  IG+V Q+  LF  +
Sbjct: 84   ALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDT 143
Query: 1102 IFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161
            I DNI YG+                 H  + A P  Y+T VGERG++LSGG+KQR+AIAR
Sbjct: 144  IADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIAR 203
Query: 1162 AVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 1221
             +LK P I+LLDEATSALD  +E  +Q +L ++   RTT++VAHRLST+   D I V++D
Sbjct: 204  TILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKD 263
Query: 1222 GRIVEQGSHSELVSRPDGAYSRLLQLQH 1249
            G IVE+G H  L+SR  G Y+ + QLQ 
Sbjct: 264  GCIVERGRHEALLSR-GGVYADMWQLQQ 290

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score =  212 bits (540), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/241 (45%), Positives = 152/241 (63%), Gaps = 3/241 (1%)
Query: 1009 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            +I  R++ F Y P  P  V+  + NL I+ G+   +VG +GSGKS++  LI+RFY P  G
Sbjct: 3    DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 1127
            +V+IDG D+   +   LR ++G+V Q+  L   SI DNI+    G               
Sbjct: 61   QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
            H F+S L   Y T VGE+G  LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 121  HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1188 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247
               + ++ +GRT +++AHRLST++  D I V++ G+IVEQG H EL+S P+  YS L QL
Sbjct: 181  MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 1248 Q 1248
            Q
Sbjct: 241  Q 241

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score =  212 bits (540), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/241 (45%), Positives = 152/241 (63%), Gaps = 3/241 (1%)
Query: 1009 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            +I  R++ F Y P  P  V+  + NL I+ G+   +VG SGSGKS++  LI+RFY P  G
Sbjct: 7    DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 1127
            +V+IDG D+   +   LR ++G+V Q+  L   SI DNI+    G               
Sbjct: 65   QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
            H F+S L   Y T VGE+G  LSGGQ+QRIAIARA++ NP IL+ D+ATSALD ESE V+
Sbjct: 125  HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 1188 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247
               + ++ +GRT +++AHRLST++  D I V++ G+IVEQG H EL+S P+  YS L QL
Sbjct: 185  MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 1248 Q 1248
            Q
Sbjct: 245  Q 245

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score =  209 bits (532), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 110/241 (45%), Positives = 151/241 (62%), Gaps = 3/241 (1%)
Query: 1009 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            +I  R++ F Y P  P  V+  + NL I+ G+   +VG SGSGKS++  LI+RFY P  G
Sbjct: 1    DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 1127
            +V+IDG D+   +   LR ++G+V Q+  L   SI DNI+    G               
Sbjct: 59   QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
            H F+S L   Y T VGE+G  LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 119  HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 1188 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247
               + ++ +GRT +++A RLST++  D I V++ G+IVEQG H EL+S P+  YS L QL
Sbjct: 179  MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 1248 Q 1248
            Q
Sbjct: 239  Q 239

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score =  209 bits (532), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 110/241 (45%), Positives = 151/241 (62%), Gaps = 3/241 (1%)
Query: 1009 EIELRHVDFAY-PSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            +I  R++ F Y P  P  V+  + NL I+ G+   +VG SGSGKS++  LI+RFY P  G
Sbjct: 7    DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 1127
            +V+IDG D+   +   LR ++G+V Q+  L   SI DNI+    G               
Sbjct: 65   QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
            H F+S L   Y T VGE+G  LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+
Sbjct: 125  HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 1188 QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQL 1247
               + ++ +GRT +++A RLST++  D I V++ G+IVEQG H EL+S P+  YS L QL
Sbjct: 185  MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 1248 Q 1248
            Q
Sbjct: 245  Q 245

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score =  206 bits (523), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 103/224 (45%), Positives = 149/224 (66%), Gaps = 3/224 (1%)
Query: 1013 RHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 1072
            RHVDFAY     ++  +D +   +     A  G SG GKS++ +L+ERFY PTAG++ ID
Sbjct: 5    RHVDFAYDDSEQIL--RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 1073 GKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXX-XXXXXXXXHGFV 1131
            G+ I  ++L++ R +IG V Q+ A+ A +I +N+ YG EG                  FV
Sbjct: 63   GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 1132 SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEAL 1191
              +P+   T VGERGV++SGGQ+QR+AIARA L+NP IL+LDEAT++LD+ESE ++Q+AL
Sbjct: 123  ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 1192 ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 1235
            + LM+GRTT+++AHRLSTI   D I  ++ G+I   G H+ELV+
Sbjct: 183  DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score =  194 bits (494), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 98/239 (41%), Positives = 152/239 (63%), Gaps = 2/239 (0%)
Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE   V+F+YP + +    K  N  I +G + ALVG +GSGKS++  L+ RFYD   G +
Sbjct: 18   IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDI 76
Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHG 1129
             I GK++ + N  S+R  IG+V Q+  LF  +I  NI YGK                 + 
Sbjct: 77   KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 1130 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 1189
            F+ ALP  + T VG +G++LSGG++QRIAIAR +LK+P I++ DEATS+LD+++E + Q+
Sbjct: 137  FIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196
Query: 1190 ALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            A+E L + RT +++AHRLSTI   + I ++  G+IVE+G+H +L+ + +G Y+ +  +Q
Sbjct: 197  AVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL-KLNGEYAEMWNMQ 254

>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260

Iteration: 1
 Score =  180 bits (457), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 97/246 (39%), Positives = 147/246 (59%), Gaps = 8/246 (3%)
Query: 1006 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT 1065
            + G ++ + V FAYP+RPDV+V +     +R G+  ALVG +GSGKS+V AL++  Y PT
Sbjct: 11   LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 1066 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGXXXXXXXXXXXX 1124
             G++++DGK + +   + L  ++  V QEP +F  S+ +NIAYG  +             
Sbjct: 71   GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 1125 XXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES- 1183
               H F+S LP  Y T V E G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA S 
Sbjct: 131  SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 1184 ---ECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGA 1240
               E +L E+ ER    R+ +L+   LS +   D I  ++ G I E G+H +L+ +  G 
Sbjct: 191  LQVEQLLYESPERY--SRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGC 247
Query: 1241 YSRLLQ 1246
            Y  ++Q
Sbjct: 248  YWAMVQ 253

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score =  174 bits (442), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/560 (25%), Positives = 260/560 (46%), Gaps = 21/560 (3%)
Query: 682  PEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYA 741
            P W ++++  +  V+      +   ++A +++    R   S+  KT   + I     L  
Sbjct: 20   PYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLI---VALIG 76
Query: 742  VVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVK 801
             V  +    F S   +N    +RR +   +L   +   +   H SSL+  RL  D   ++
Sbjct: 77   AVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRF-HTSSLIT-RLTNDVTQLQ 134
Query: 802  SAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQLSLKG--FAG 859
            + +   + ++++     +   ++A  +  ++S +++   P +VL      L+ KG     
Sbjct: 135  NLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVL--LFVWLTKKGNPLFR 192
Query: 860  DTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLTAG---IL 916
               ++  + + +  E +  +R V AF  +      + +E     +++LRRS+ +    I+
Sbjct: 193  KIQESTDEVNRVVRENLLGVRVVRAFRREE-----YENENFRKANESLRRSIISAFSLIV 247
Query: 917  FGISQFALHASEALI--LWYGVHLVGKGVSTFSKXXXXXXXXXXTANSVAETVSLAPEII 974
            F +  F    +  +I  LW+G  LV                      S+    ++   I+
Sbjct: 248  FALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIV 307
Query: 975  RGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLR 1034
            R   S   V   L+    I+  D +A  +  + G +   +V+F Y    D V+    N  
Sbjct: 308  RASASAKRVLEVLNEKPAIEEAD-NALALPNVEGSVSFENVEFRYFENTDPVL-SGVNFS 365
Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 1094
            ++ G   A++G +GSGKS+++ LI R  DP  G+V +D  D+R + LK LR  I  V QE
Sbjct: 366  VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQE 425
Query: 1095 PALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQK 1154
              LF+ +I +N+ +G+E                H F+ +LP  Y + V   G   SGGQK
Sbjct: 426  TVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQK 485
Query: 1155 QRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVD 1214
            QR++IARA++K P +L+LD+ TS++D  +E  + + L+R  +G TT ++  ++ T    D
Sbjct: 486  QRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLAD 545
Query: 1215 CIGVVQDGRIVEQGSHSELV 1234
             I V+ +G++   G+H EL+
Sbjct: 546  KILVLHEGKVAGFGTHKELL 565

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score =  173 bits (439), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 93/245 (37%), Positives = 142/245 (57%), Gaps = 4/245 (1%)
Query: 1005 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP 1064
             ++G ++ + V FAYP+ P+V V +     +  G+  ALVG +GSGKS+V AL++  Y P
Sbjct: 12   NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1065 TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGXXXXXXXXXXX 1123
            T GKV++DG+ + + +   L  ++  V QEP LF  S  +NIAYG               
Sbjct: 72   TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 1124 XXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
                H F+S  P  Y T VGE G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA +
Sbjct: 132  ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 1184 ECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
            +  +Q  L        RT +L+ H+LS       I  +++G + EQG+H +L+ R  G Y
Sbjct: 192  QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCY 250
Query: 1242 SRLLQ 1246
              +++
Sbjct: 251  RSMVE 255

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score =  169 bits (428), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 140/245 (57%), Gaps = 4/245 (1%)
Query: 1005 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP 1064
             ++G ++ + V FAYP+ P+V V +     +  G+  ALVG +GSGKS+V AL++  Y P
Sbjct: 12   NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1065 TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGXXXXXXXXXXX 1123
            T GKV++DG+ + + +   L  ++  V QEP LF  S  +NIAYG               
Sbjct: 72   TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 1124 XXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
                H F+S  P  Y T VGE G QLSGGQ+Q +A+ARA+++ P +L+LD ATSALDA +
Sbjct: 132  ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 1184 ECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
            +  +Q  L        RT +L+  +LS       I  +++G + EQG+H +L+ R  G Y
Sbjct: 192  QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCY 250
Query: 1242 SRLLQ 1246
              +++
Sbjct: 251  RSMVE 255

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score =  164 bits (415), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 90/245 (36%), Positives = 139/245 (56%), Gaps = 4/245 (1%)
Query: 1005 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDP 1064
             ++G ++ + V FAYP+ P+V V +     +  G+  ALVG +GSGKS+V AL++  Y P
Sbjct: 12   NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 1065 TAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGXXXXXXXXXXX 1123
            T GKV++DG+ + + +   L  ++  V QEP LF  S  +NIAYG               
Sbjct: 72   TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 1124 XXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
                H F+S  P  Y T VGE G QL+ GQ+Q +A+ARA+++ P +L+LD ATSALDA +
Sbjct: 132  ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 1184 ECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
            +  +Q  L        RT +L+  +LS       I  +++G + EQG+H +L+ R  G Y
Sbjct: 192  QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCY 250
Query: 1242 SRLLQ 1246
              +++
Sbjct: 251  RSMVE 255

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 12/217 (5%)
Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSL 1084
              + +L + AGQ   ++GASG+GKS++I  +     PT G V++DG+++  L+   L   
Sbjct: 21   LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 1085 RLKIGLVQQEPALFAA-SIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 1143
            R +IG++ Q   L ++ ++F N+A   E                   V         P  
Sbjct: 81   RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 140
Query: 1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTV 1201
                 LSGGQKQR+AIARA+  NP +LL DEATSALD  +   + E L+ + R  G T +
Sbjct: 141  -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTIL 195
Query: 1202 LVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
            L+ H +  ++ + DC+ V+ +G ++EQ + SE+ S P
Sbjct: 196  LITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 232

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score =  113 bits (282), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 116/217 (53%), Gaps = 12/217 (5%)
Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSL 1084
              + +L + AGQ   ++GASG+GKS++I  +     PT G V++DG+++  L+   L   
Sbjct: 44   LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1085 RLKIGLVQQEPALFAA-SIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 1143
            R +IG++ Q   L ++ ++F N+A   E                   V         P  
Sbjct: 104  RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 163
Query: 1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTV 1201
                 LSGGQKQR+AIARA+  NP +LL D+ATSALD  +   + E L+ + R  G T +
Sbjct: 164  -----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTIL 218
Query: 1202 LVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
            L+ H +  ++ + DC+ V+ +G ++EQ + SE+ S P
Sbjct: 219  LITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score =  113 bits (282), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/216 (36%), Positives = 116/216 (53%), Gaps = 19/216 (8%)
Query: 1030 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089
            + NL+I+ G+  AL+G SGSGKS+++  I   Y PT+GK+  D KD+  L  K     +G
Sbjct: 21   NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRN--VG 78
Query: 1090 LVQQEPALFA-ASIFDNIAYG----KEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGE 1144
            LV Q  AL+   +++ NIA+     K                 H  +  L N Y      
Sbjct: 79   LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH--IDKLLNRYPW---- 132
Query: 1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVL 1202
               QLSGGQ+QR+AIARA++K P +LLLDE  S LDA     ++  L+RL +  G TTV 
Sbjct: 133  ---QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189
Query: 1203 VAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
            V H +   +   D I V+++G I++ G+  E+  +P
Sbjct: 190  VTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score =  110 bits (274), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 12/217 (5%)
Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSL 1084
              + +L + AGQ   ++GASG+GKS++I  +     PT G V++DG+++  L+   L   
Sbjct: 44   LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 1085 RLKIGLVQQEPALFAA-SIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 1143
            R +IG + Q   L ++ ++F N+A   E                   V         P  
Sbjct: 104  RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 163
Query: 1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTV 1201
                 LSGGQKQR+AIARA+  NP +LL D+ATSALD  +   + E L+ + R  G T +
Sbjct: 164  -----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTIL 218
Query: 1202 LVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
            L+ H    ++ + DC+ V+ +G ++EQ + SE+ S P
Sbjct: 219  LITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255

>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237

Iteration: 1
 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 19/240 (7%)
Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            I +R+  F + +R D          I  G   A+VG  G GKSS+++ +    D   G V
Sbjct: 4    ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHG 1129
             I G              +  V Q+  +   S+ +NI +G +                  
Sbjct: 63   AIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPD 109
Query: 1130 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE-SECVLQ 1188
                LP+  +T +GE+GV LSGGQKQR+++ARAV  N  I L D+  SA+DA   + + +
Sbjct: 110  L-EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
Query: 1189 EAL--ERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 1246
              +  + +++ +T +LV H +S +  VD I V+  G+I E GS+ EL++R DGA++  L+
Sbjct: 169  NVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLR 227

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 70/211 (33%), Positives = 107/211 (50%), Gaps = 13/211 (6%)
Query: 1043 LVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-AS 1101
            L+G +G+GKS  + LI     P  G+V ++G DI  L  +  R  IG V Q+ ALF   S
Sbjct: 29   LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 1102 IFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161
            ++ NIAYG                     ++ L       +  +  +LSGG++QR+A+AR
Sbjct: 87   VYRNIAYGLRNVERVERDRRVREMAEKLGIAHL-------LDRKPARLSGGERQRVALAR 139
Query: 1162 AVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVL--VAHRL-STIRGVDCIGV 1218
            A++  P +LLLDE  SA+D +++ VL E L  + R     +  V H L       D + V
Sbjct: 140  ALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAV 199
Query: 1219 VQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 1249
            + +GRIVE+G   EL S  +G  +  L  ++
Sbjct: 200  MLNGRIVEKGKLKELFSAKNGEVAEFLSARN 230

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 31/227 (13%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSL 1084
            V K  N+ IR G+   ++G SGSGKS+ +  +    D   G+++IDG +++    NL  +
Sbjct: 18   VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 1085 RLKIGLVQQEPALFA-ASIFDNIAYGK-----------EGXXXXXXXXXXXXXXXHGFVS 1132
            R ++G+V Q   LF   ++ +NI               E                H +  
Sbjct: 78   REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-- 135
Query: 1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 1192
              P++           LSGGQ QR+AIARA+   P I+L DE TSALD E    +   ++
Sbjct: 136  --PDS-----------LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 182
Query: 1193 RLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
            +L   G T V+V H +   R V D +  +  G I+E+G   +L  RP
Sbjct: 183  QLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 229

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 107/227 (47%), Gaps = 31/227 (13%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--RLNLKSL 1084
            V K  N+ IR G+   ++G SGSGKS+ +  +    D   G+++IDG +++    NL  +
Sbjct: 39   VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 1085 RLKIGLVQQEPALFA-ASIFDNIAYGK-----------EGXXXXXXXXXXXXXXXHGFVS 1132
            R ++G+V Q   LF   ++ +NI               E                H +  
Sbjct: 99   REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-- 156
Query: 1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 1192
              P++           LSGGQ QR+AIARA+   P I+L DE TSALD E    +   ++
Sbjct: 157  --PDS-----------LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 203
Query: 1193 RLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
            +L   G T V+V H +   R V D +  +  G I+E+G   +L  RP
Sbjct: 204  QLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 113/214 (52%), Gaps = 14/214 (6%)
Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087
              + +L++ +G+   ++G +G+GK+  + LI  F+ P +G++++DGKD+   +L   +  
Sbjct: 16   LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV--TDLSPEKHD 73
Query: 1088 IGLVQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERG 1146
            I  V Q  +LF   ++  N+ +G                      +A     +  +    
Sbjct: 74   IAFVYQNYSLFPHMNVKKNLEFG--------MRMKKIKDPKRVLDTARDLKIEHLLDRNP 125
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-MRGRTTVL-VA 1204
            + LSGG++QR+A+ARA++ NP ILLLDE  SALD  ++   +E L  L  + + TVL + 
Sbjct: 126  LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHIT 185
Query: 1205 HRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
            H  +  R + D I VV DG++++ G   E+  +P
Sbjct: 186  HDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 29/233 (12%)
Query: 1010 IELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            I+L++V   Y    +++   K+ NL I+ G+  +++G SGSGKS+++ +I     PT G+
Sbjct: 2    IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1069 VMIDGKDIRRLNLKSL----RLKIGLVQQEPALFAA-SIFDNI----------AYGKEGX 1113
            V ID      L+   L    R KIG V Q+  L    +  +N+          A   E  
Sbjct: 62   VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1114 XXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD 1173
                            F +  PN           QLSGGQ+QR+AIARA+  NP I+L D
Sbjct: 122  RKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILAD 170
Query: 1174 EATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRI 1224
            + T ALD+++   + + L++L    G+T V+V H ++  R  + I  ++DG +
Sbjct: 171  QPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 73/233 (31%), Positives = 113/233 (48%), Gaps = 29/233 (12%)
Query: 1010 IELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            I+L++V   Y    +++   K+ NL I+ G+  ++ G SGSGKS+ + +I     PT G+
Sbjct: 2    IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 1069 VMIDGKDIRRLNLKSL----RLKIGLVQQEPALFAA-SIFDNI----------AYGKEGX 1113
            V ID      L+   L    R KIG V Q+  L    +  +N+          A   E  
Sbjct: 62   VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 1114 XXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD 1173
                            F +  PN           QLSGGQ+QR+AIARA+  NP I+L D
Sbjct: 122  RKRALECLKXAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILAD 170
Query: 1174 EATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRI 1224
            E T ALD+++   + + L++L    G+T V+V H ++  R  + I  ++DG +
Sbjct: 171  EPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 115/232 (49%), Gaps = 13/232 (5%)
Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE   V+  YP     V  +  + +IR G+   L+G SGSGK++++ LI     PT G V
Sbjct: 15   IEFVGVEKIYPGGARSV--RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXH 1128
             I GK  R  +L   +  +GLV Q  ALF   +++DN+++G                   
Sbjct: 73   WIGGK--RVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 1129 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 1188
             F+     A + P      +LSGGQ+QR+A+ARA+   P +LL DE  +A+D +    L+
Sbjct: 131  RFMRLESYANRFPH-----ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185
Query: 1189 EALERLMR--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
              + ++    G T+V V H +   +   D + V+ +G + + G+  E+  +P
Sbjct: 186  TFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 13/228 (5%)
Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087
             ++ +L I  G+   + G +GSGKS+++ ++    +PT+G V+ DG+   R     +R  
Sbjct: 23   LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE---RKKGYEIRRN 79
Query: 1088 IGLVQQEPA--LFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGER 1145
            IG+  Q P    FA  +FD +A+  +                  FV    +++K  V   
Sbjct: 80   IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAME-FVGLDFDSFKDRVP-- 136
Query: 1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVA 1204
               LSGG+K+R+AIA  ++  P IL+LDE    LD E +  L   +E+    G+T +L++
Sbjct: 137  -FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195
Query: 1205 HRLST-IRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY--SRLLQLQH 1249
            H + T I  VD + V++ G+ V  G+  E + + D  +  S++L ++ 
Sbjct: 196  HDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRR 243

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 116/228 (50%), Gaps = 13/228 (5%)
Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087
             ++ +L I  G+   + G +GSGKS+++ ++    +PT+G V+ DG+   R     +R  
Sbjct: 25   LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE---RKKGYEIRRN 81
Query: 1088 IGLVQQEPA--LFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGER 1145
            IG+  Q P    FA  +FD +A+  +                  FV    +++K  V   
Sbjct: 82   IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAME-FVGLDFDSFKDRVP-- 138
Query: 1146 GVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTTVLVA 1204
               LSGG+K+R+AIA  ++  P IL+LDE    LD E +  L   +E+    G+T +L++
Sbjct: 139  -FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 197
Query: 1205 HRLST-IRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY--SRLLQLQH 1249
            H + T I  VD + V++ G+ V  G+  E + + D  +  S++L ++ 
Sbjct: 198  HDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRFFTSKMLVMRR 245

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 29/233 (12%)
Query: 1010 IELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            ++L++V   Y    +++   K+ NL I+ G+  +++G SGSGKS+++ +I     PT G+
Sbjct: 2    VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1069 VMIDGKDIRRLNLKSL----RLKIGLVQQEPALFAA-SIFDNI----------AYGKEGX 1113
            V ID      L+   L    R KIG V Q+  L    +  +N+          A   E  
Sbjct: 62   VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1114 XXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLD 1173
                            F +  PN           QLSGGQ+QR+AIARA+  NP I+L D
Sbjct: 122  RKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILAD 170
Query: 1174 EATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRI 1224
            + T ALD+++   + + L++L    G+T V+V H ++  R  + I  ++DG +
Sbjct: 171  QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 111/217 (51%), Gaps = 15/217 (6%)
Query: 1031 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 1090
             NL I+ G+   L+G SG GK++ + +I    +PT G++    +D+  L  K     I +
Sbjct: 31   LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDR--NISM 88
Query: 1091 VQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGF--VSALPNAYKTPVGERGV 1147
            V Q  A++   ++++NIA+  +                     +  L N Y         
Sbjct: 89   VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------- 141
Query: 1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR--TTVLVAH 1205
            QLSGGQ+QR+A+ARA++  P +LL+DE  S LDA+    ++  +++L +    TT+ V H
Sbjct: 142  QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 1206 -RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
             ++  +   D I V+  G++++ GS +E+  RP+  +
Sbjct: 202  DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 238

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 111/217 (51%), Gaps = 15/217 (6%)
Query: 1031 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGL 1090
             NL I+ G+   L+G SG GK++ + +I    +PT G++    +D+  L  K     I +
Sbjct: 30   LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDR--NISM 87
Query: 1091 VQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGF--VSALPNAYKTPVGERGV 1147
            V Q  A++   ++++NIA+  +                     +  L N Y         
Sbjct: 88   VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------- 140
Query: 1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR--TTVLVAH 1205
            QLSGGQ+QR+A+ARA++  P +LL+DE  S LDA+    ++  +++L +    TT+ V H
Sbjct: 141  QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 1206 -RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
             ++  +   D I V+  G++++ GS +E+  RP+  +
Sbjct: 201  DQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 106/214 (49%), Gaps = 11/214 (5%)
Query: 1032 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 1091
            +  ++ G+  AL+G SG GK++ + ++   Y PT+G++  D  D+   ++     ++G+V
Sbjct: 23   SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVNDIPPKYREVGMV 80
Query: 1092 QQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLS 1150
             Q  AL+   ++F+NIA+                        A        +  +  QLS
Sbjct: 81   FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEI-----ARKLLIDNLLDRKPTQLS 135
Query: 1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAH-RL 1207
            GGQ+QR+A+ARA++K P +LL DE  S LDA    +++  ++ L +  G T+V V H + 
Sbjct: 136  GGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA 195
Query: 1208 STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
              +     I V   G++V+ G+  E+   P   +
Sbjct: 196  EAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMF 229

>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 26/240 (10%)
Query: 1004 ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 1063
            +T  G+  L   +F+    P   V KD N +I  GQ  A+ G++G+GK+S++ +I    +
Sbjct: 33   KTSNGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89
Query: 1064 PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI---AYGKEGXXXXXXXX 1120
            P+ GK+   G+             I    Q   +   +I +NI   +Y +          
Sbjct: 90   PSEGKIKHSGR-------------ISFCSQNSWIMPGTIKENIIGVSYDE-----YRYRS 131
Query: 1121 XXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 1180
                      +S         +GE G+ LSGGQ+ RI++ARAV K+  + LLD     LD
Sbjct: 132  VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
Query: 1181 AESEC-VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
              +E  + +  + +LM  +T +LV  ++  ++  D I ++ +G     G+ SEL + RPD
Sbjct: 192  VLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPD 251

>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 16/214 (7%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
            V KD N +I  GQ  A+ G++G+GK+S++ +I    +P+ GK+   G+            
Sbjct: 35   VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 82
Query: 1087 KIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERG 1146
             I    Q   +   +I +NI +G                     +S         +GE G
Sbjct: 83   -ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED-ISKFAEKDNIVLGEGG 140
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVLVAH 1205
            + LSGGQ+ RI++ARAV K+  + LLD     LD  +E  + +  + +LM  +T +LV  
Sbjct: 141  ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 200
Query: 1206 RLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
            ++  ++  D I ++ +G     G+ SEL + +PD
Sbjct: 201  KMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 234

>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 16/214 (7%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
            V KD N +I  GQ  A+ G++G+GK+S++ +I    +P+ GK+   G+            
Sbjct: 23   VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 1087 KIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERG 1146
             I    Q   +   +I +NI +G                     +S         +GE G
Sbjct: 71   -ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED-ISKFAEKDNIVLGEGG 128
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVLVAH 1205
            + LSGGQ+ RI++ARAV K+  + LLD     LD  +E  + +  + +LM  +T +LV  
Sbjct: 129  ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 1206 RLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
            ++  ++  D I ++ +G     G+ SEL + +PD
Sbjct: 189  KMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 222

>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 26/240 (10%)
Query: 1004 ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 1063
            +T  G+  L   +F+    P   V KD N +I  GQ  A+ G++G+GK+S++ +I    +
Sbjct: 33   KTSNGDDSLFFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89
Query: 1064 PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI---AYGKEGXXXXXXXX 1120
            P+ GK+   G+             I    Q   +   +I +NI   +Y +          
Sbjct: 90   PSEGKIKHSGR-------------ISFCSQNSWIMPGTIKENIIGVSYDE-----YRYRS 131
Query: 1121 XXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD 1180
                      +S         +GE G+ LSGGQ+ RI++ARAV K+  + LLD     LD
Sbjct: 132  VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
Query: 1181 AESEC-VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
              +E  + +  + +LM  +T +LV  ++  ++  D I ++ +G     G+ SEL + RPD
Sbjct: 192  VLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPD 251

>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 16/227 (7%)
Query: 1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073
            +V F++       V K+ NL I  G+  A+ G++GSGK+S++ LI    + + G +   G
Sbjct: 40   NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1074 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSA 1133
            +             +    Q   +   +I +NI +G                     ++ 
Sbjct: 100  R-------------VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQD-ITK 145
Query: 1134 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA-ESECVLQEALE 1192
                  T +GE GV LSGGQ+ RI++ARAV K+  + LLD     LD    E V +  + 
Sbjct: 146  FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1193 RLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
            +LM  +T +LV  ++  +R  D I ++  G     G+ SEL S RPD
Sbjct: 206  KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 252

>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 104/227 (45%), Gaps = 16/227 (7%)
Query: 1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073
            +V F++       V K+ NL I  G+  A+ G++GSGK+S++ LI    + + G +   G
Sbjct: 40   NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1074 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSA 1133
            +             +    Q   +   +I +NI +G                     ++ 
Sbjct: 100  R-------------VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQD-ITK 145
Query: 1134 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA-ESECVLQEALE 1192
                  T +GE GV LSGGQ+ RI++ARAV K+  + LLD     LD    E V +  + 
Sbjct: 146  FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1193 RLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
            +LM  +T +LV  ++  +R  D I ++  G     G+ SEL S RPD
Sbjct: 206  KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 252

>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 110/237 (46%), Gaps = 19/237 (8%)
Query: 1004 ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 1063
            +T  G+  L   +F+    P   V KD N +I  GQ  A+ G++G+GK+S++ +I    +
Sbjct: 33   KTSNGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89
Query: 1064 PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXX 1123
            P+ GK+   G+             I    Q   +   +I +NI  G              
Sbjct: 90   PSEGKIKHSGR-------------ISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKA 136
Query: 1124 XXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
                   +S         +GE G+ LSGGQ+ RI++ARAV K+  + LLD     LD  +
Sbjct: 137  CQLEED-ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 195
Query: 1184 EC-VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
            E  + +  + +LM  +T +LV  ++  ++  D I ++ +G     G+ SEL + +PD
Sbjct: 196  EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 252

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 30/229 (13%)
Query: 1025 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR---RLNL 1081
            VV   + N+ I  G+   ++G SG+GK++ + +I     P+ G++  D + +    +L +
Sbjct: 18   VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
Query: 1082 KSLRLKIGLVQQEPALFAA-SIFDNIAY-------GKEGXXXXXXXXXXXXXXXHGFVSA 1133
                 KIG+V Q  AL+   + F+NIA+        KE                H  ++ 
Sbjct: 78   PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE-EIRKRVEEVAKILDIHHVLNH 136
Query: 1134 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE----SECVLQE 1189
             P            +LSGGQ+QR+A+ARA++K+P++LLLDE  S LDA     +  +++E
Sbjct: 137  FPR-----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185
Query: 1190 ALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
               RL  G T ++V+H  + I  + D +GV+  G++V+ G   +L   P
Sbjct: 186  VQSRL--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232

>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 16/227 (7%)
Query: 1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073
            +V F++       V K+ NL I  G+  A+ G++GSGK+S++ LI    + + G +   G
Sbjct: 40   NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1074 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSA 1133
            +             +    Q   +   +I +NI  G                     ++ 
Sbjct: 100  R-------------VSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQD-ITK 145
Query: 1134 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA-ESECVLQEALE 1192
                  T +GE GV LSGGQ+ RI++ARAV K+  + LLD     LD    E V +  + 
Sbjct: 146  FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1193 RLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
            +LM  +T +LV  ++  +R  D I ++  G     G+ SEL S RPD
Sbjct: 206  KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 252

>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 16/227 (7%)
Query: 1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073
            +V F++       V K+ NL I  G+  A+ G++GSGK+S++ LI    + + G +   G
Sbjct: 40   NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1074 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSA 1133
            +             +    Q   +   +I +NI  G                     ++ 
Sbjct: 100  R-------------VSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQD-ITK 145
Query: 1134 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA-ESECVLQEALE 1192
                  T +GE GV LSGGQ+ RI++ARAV K+  + LLD     LD    E V +  + 
Sbjct: 146  FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1193 RLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
            +LM  +T +LV  ++  +R  D I ++  G     G+ SEL S RPD
Sbjct: 206  KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 252

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 108/214 (50%), Gaps = 14/214 (6%)
Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK--DIRRLNLKSLR 1085
             K  N+ I+ G+  A++G +G GKS++         P++G+++ D K  D  R  +  LR
Sbjct: 24   LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 1086 LKIGLVQQEP--ALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 1143
              IG+V Q+P   LF+AS++ ++++G                      +AL       + 
Sbjct: 84   ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD------NALKRTGIEHLK 137
Query: 1144 ERGVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTT 1200
            ++    LS GQK+R+AIA  ++  P +L+LDE T+ LD      + + L  + +  G T 
Sbjct: 138  DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITI 197
Query: 1201 VLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSEL 1233
            ++  H +  +    D + V+++GR++ QG+  E+
Sbjct: 198  IIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEV 231

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 1083
            +VVV KD NL I  G+    VG SG GKS+++ +I      T+G + I  K  R  +   
Sbjct: 15   EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK--RMNDTPP 72
Query: 1084 LRLKIGLVQQEPALFAA-SIFDNIAYG-------KEGXXXXXXXXXXXXXXXHGFVSALP 1135
                +G+V Q  AL+   S+ +N+++G       KE                H  +   P
Sbjct: 73   AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKP 131
Query: 1136 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 1195
             A           LSGGQ+QR+AI R ++  P++ LLDE  S LDA     ++  + RL 
Sbjct: 132  KA-----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180
Query: 1196 R--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
            +  GRT + V H ++  +   D I V+  GR+ + G   EL   P
Sbjct: 181  KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/225 (31%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 1083
            +VVV KD NL I  G+    VG SG GKS+++ +I      T+G + I  K  R  +   
Sbjct: 15   EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK--RMNDTPP 72
Query: 1084 LRLKIGLVQQEPALFAA-SIFDNIAYG-------KEGXXXXXXXXXXXXXXXHGFVSALP 1135
                +G+V Q  AL+   S+ +N+++G       KE                H  +   P
Sbjct: 73   AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKP 131
Query: 1136 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 1195
             A           LSGGQ+QR+AI R ++  P++ LLDE  S LDA     ++  + RL 
Sbjct: 132  KA-----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180
Query: 1196 R--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
            +  GRT + V H ++  +   D I V+  GR+ + G   EL   P
Sbjct: 181  KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 115/229 (50%), Gaps = 30/229 (13%)
Query: 1025 VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR---RLNL 1081
            VV   + N+ I  G+   ++G SG+GK++ + +I     P+ G++  D + +    +L +
Sbjct: 18   VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV 77
Query: 1082 KSLRLKIGLVQQEPALFAA-SIFDNIAY-------GKEGXXXXXXXXXXXXXXXHGFVSA 1133
                 KIG+V Q  AL+   + F+NIA+        KE                H  ++ 
Sbjct: 78   PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKE-EIRKRVEEVAKILDIHHVLNH 136
Query: 1134 LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE----SECVLQE 1189
             P            +LSG Q+QR+A+ARA++K+P++LLLDE  S LDA     +  +++E
Sbjct: 137  FPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185
Query: 1190 ALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
               RL  G T ++V+H  + I  + D +GV+  G++V+ G   +L   P
Sbjct: 186  VQSRL--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 19/225 (8%)
Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI----RRL 1079
            DV   KD +L I+ G+   L+G SG GK++ +  I    +PT G++ I+   +    + +
Sbjct: 18   DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 1080 NLKSLRLKIGLVQQEPALFA-ASIFDNIAYG---KEGXXXXXXXXXXXXXXXHGFVSALP 1135
             +      +  V Q  AL+   +++DNIA+    ++                 G    L 
Sbjct: 78   FVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELL- 136
Query: 1136 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 1195
                     +  +LSGGQ+QR+A+ RA+++ P + L DE  S LDA+     +  L++L 
Sbjct: 137  -------NRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQ 189
Query: 1196 R--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
            R  G TT+ V H ++      D I V   G + + G+  E+  +P
Sbjct: 190  RQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKP 234

>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 23/217 (10%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
            V KD N +I  GQ  A+ G++G+GK+S++ +I    +P+ GK+   G+            
Sbjct: 23   VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 1087 KIGLVQQEPALFAASIFDNI---AYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 1143
             I    Q   +   +I +NI   +Y +                    +S         +G
Sbjct: 71   -ISFCSQFSWIMPGTIKENIIGVSYDE-----YRYRSVIKACQLEEDISKFAEKDNIVLG 124
Query: 1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVL 1202
            E G+ LSGGQ+ RI++ARAV K+  + LLD     LD  +E  + +  + +LM  +T +L
Sbjct: 125  EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 184
Query: 1203 VAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
            V  ++  ++  D I ++ +G     G+ SEL + +PD
Sbjct: 185  VTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 221

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 1083
            +VVV KD NL I  G+    VG SG GKS+++ +I      T+G + I  K  R  +   
Sbjct: 15   EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK--RMNDTPP 72
Query: 1084 LRLKIGLVQQEPALFAA-SIFDNIAYG-------KEGXXXXXXXXXXXXXXXHGFVSALP 1135
                +G+V Q  AL+   S+ +N+++G       KE                H  +   P
Sbjct: 73   AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-LLDRKP 131
Query: 1136 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 1195
             A           LSGGQ+QR+AI R ++  P++ LLD+  S LDA     ++  + RL 
Sbjct: 132  KA-----------LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLH 180
Query: 1196 R--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
            +  GRT + V H ++  +   D I V+  GR+ + G   EL   P
Sbjct: 181  KRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225

>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 105/230 (45%), Gaps = 23/230 (10%)
Query: 1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073
            +V F++       V K+ NL I  G+  A+ G++GSGK+S++ LI    + + G +   G
Sbjct: 40   NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 1074 KDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI---AYGKEGXXXXXXXXXXXXXXXHGF 1130
            +             +    Q   +   +I +NI   +Y +                    
Sbjct: 100  R-------------VSFCSQFSWIMPGTIKENIIGVSYDE-----YRYKSVVKACQLQQD 141
Query: 1131 VSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA-ESECVLQE 1189
            ++       T +GE GV LSGGQ+ RI++ARAV K+  + LLD     LD    E V + 
Sbjct: 142  ITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFES 201
Query: 1190 ALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
             + +LM  +T +LV  ++  +R  D I ++  G     G+ SEL S RPD
Sbjct: 202  CVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPD 251

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 111/226 (49%), Gaps = 13/226 (5%)
Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI----RRL 1079
            +V   ++ +L ++ G+   L+G SG GK++ + +I    +P+ G++ I  K +    + +
Sbjct: 15   EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 1080 NLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAY 1138
             +      I +V Q  AL+   +++DNIA+  +                   +       
Sbjct: 75   FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN 134
Query: 1139 KTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-- 1196
            + P      +LSGGQ+QR+A+ RA+++ P + L+DE  S LDA+    ++  L++L R  
Sbjct: 135  RKPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL 189
Query: 1197 GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
            G TT+ V H ++  +   D I V+  G + + GS  E+  +P   +
Sbjct: 190  GVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 104/230 (45%), Gaps = 15/230 (6%)
Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IEL  V F Y       V KD N     G+   +VG +GSGK++++ ++       AG++
Sbjct: 12   IELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPA--LFAASIFDNIAYGKEGXXXXXXXXXXXXXXX 1127
             +DG          LR  +G V Q P+  +  A++ +++A+  E                
Sbjct: 68   FLDGSPADPF---LLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKV 124
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
               V     A   P+      LSGGQKQR+AIA  + ++   L LDE  S LD  S+  +
Sbjct: 125  LELVGLSGLAAADPL-----NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREI 179
Query: 1188 QEALERLM-RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236
             + LE L   G+  +LV H L  +  +D I  + +G I   GS  E V R
Sbjct: 180  FQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVER 229

>pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 16/214 (7%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
            V KD N +I  GQ  A+ G++G+GK+S++ +I    +P+ GK+   G             
Sbjct: 53   VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 1087 KIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERG 1146
            +I    Q   +   +I +NI +G                     +S         +GE G
Sbjct: 100  RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED-ISKFAEKDNIVLGEGG 158
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVLVAH 1205
            + LS GQ+ +I++ARAV K+  + LLD     LD  +E  + +  + +LM  +T +LV  
Sbjct: 159  ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 1206 RLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
            ++  ++  D I ++ +G     G+ SEL + +PD
Sbjct: 219  KMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 252

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 17/233 (7%)
Query: 1014 HVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073
            H+     S  +  V  D +L +  G+   ++GASG GK++++  +  F  P +G++ + G
Sbjct: 6    HIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSG 65
Query: 1074 KDI--RRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYG---KEGXXXXXXXXXXXXXXX 1127
            K I  +  NL     ++G + QE  LF   +++ NIAYG    +G               
Sbjct: 66   KTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLEL 125
Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
             G +S L   Y         +LSGGQ+QR A+ARA+  +P ++LLDE  SALD +    +
Sbjct: 126  TG-ISELAGRYPH-------ELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI 177
Query: 1188 QEALERLMR--GRTTVLVAH-RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
            +E +   +R  G++ V V+H R   ++  D I V++ GRI++  S  EL  +P
Sbjct: 178  REDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230

>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 23/217 (10%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
            V KD N +I  GQ  A+ G++G+GK+S++ +I    +P+ GK+   G+            
Sbjct: 53   VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 1087 KIGLVQQEPALFAASIFDNI---AYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVG 1143
             I    Q   +   +I +NI   +Y +                    +S         +G
Sbjct: 101  -ISFCSQFSWIMPGTIKENIIGVSYDE-----YRYRSVIKACQLEEDISKFAEKDNIVLG 154
Query: 1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC-VLQEALERLMRGRTTVL 1202
            E G+ LS GQ+ +I++ARAV K+  + LLD     LD  +E  + +  + +LM  +T +L
Sbjct: 155  EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 1203 VAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS-RPD 1238
            V  ++  ++  D I ++ +G     G+ SEL + +PD
Sbjct: 215  VTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPD 251

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 21/210 (10%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
            + K  +L ++ G+  +++GASGSGKS+++ ++     PT GKV ++GK++   N K L L
Sbjct: 19   ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 1087 ----KIGLVQQ----EPALFAAS--IFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPN 1136
                K+G V Q     P L A    I   +  GK                  G       
Sbjct: 79   LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG------- 131
Query: 1137 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR 1196
                 +  +  +LSGG++QR+AIARA+   P +L  DE T  LD+ +   + +   ++  
Sbjct: 132  ---DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE 188
Query: 1197 GRTT-VLVAHRLSTIRGVDCIGVVQDGRIV 1225
            G T+ V+V H             ++DG++V
Sbjct: 189  GGTSIVMVTHERELAELTHRTLEMKDGKVV 218

>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 96/211 (45%), Gaps = 2/211 (0%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
            + ++ +  I  GQ   L+G +GSGKS++++   R  + T G++ IDG     + L+  R 
Sbjct: 36   ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94
Query: 1087 KIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERG 1146
              G++ Q+  +F+ +   N+                        +   P      + + G
Sbjct: 95   AFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHR 1206
              LS G KQ + +AR+VL    ILLLDE ++ LD  +  +++  L++     T +L   R
Sbjct: 154  CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEAR 213
Query: 1207 LSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
            +  +   D   V+++ ++ +  S  EL   P
Sbjct: 214  IEAMLECDQFLVIEENKVRQYDSILELYHYP 244

>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 101/230 (43%), Gaps = 21/230 (9%)
Query: 1031 FNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT----AGKVMIDGKDI---RRLNLKS 1083
             +L I      A+VG S SGKS++I  + +   P     +G+V+  GKD+   R   L+ 
Sbjct: 27   ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 1084 LRLK-IGLVQQ------EPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPN 1136
            +R K I LV Q       P +     F +      G                  V   P 
Sbjct: 87   IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEA-HGVRWSHSELIEKASEKLRMVRLNPE 145
Query: 1137 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALD--AESECVLQEALERL 1194
            A    +    +QLSGG KQR+ IA A+L +P +L+LDE TSALD   ++  +      + 
Sbjct: 146  AV---LNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKK 202
Query: 1195 MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSR 1243
            M   T + V H ++    + D + V+  G +VE  S  ++   P   Y+R
Sbjct: 203  MLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKNPLHPYTR 252

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 29/232 (12%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIR--------- 1077
            V K  +L+ RAG   +++G+SGSGKS+ +  I     P+ G ++++G++I          
Sbjct: 21   VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 1078 ----RLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVS 1132
                +  L+ LR ++ +V Q   L++  ++ +N+                          
Sbjct: 81   KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP--------IQVLGLSKHDARER 132
Query: 1133 ALPNAYKTPVGERG-----VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
            AL    K  + ER      V LSGGQ+QR++IARA+   P +LL DE TSALD E    +
Sbjct: 133  ALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 192
Query: 1188 QEALERLM-RGRTTVLVAHRLSTIRGVDC-IGVVQDGRIVEQGSHSELVSRP 1237
               +++L   G+T V+V H +   R V   +  +  G+I E+G   ++   P
Sbjct: 193  LRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNP 244

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 105/218 (48%), Gaps = 21/218 (9%)
Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-RL 1086
             K  +L++  GQ   L+GA+G+GK++ ++ I        GK++ +G+DI       + R 
Sbjct: 22   IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 1087 KIGLVQQEPALFAA-SIFDNIAYG------KEGXXXXXXXXXXXXXXXHGFVSALPNAYK 1139
             I LV +   +F   ++++N+  G      KEG                 ++ +L    K
Sbjct: 82   GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLE-----------WIFSLFPRLK 130
Query: 1140 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 1199
              + + G  LSGG++Q +AI RA+   P +L  DE +  L       + E ++++ +  T
Sbjct: 131  ERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGT 190
Query: 1200 TVLVAHR--LSTIRGVDCIGVVQDGRIVEQGSHSELVS 1235
            T+L+  +  L  ++      V++ G+IV +G  SEL+ 
Sbjct: 191  TILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL-M 550
           G   ++ +R    S G  +++ IARA++ NP++ +LDE TS LD  +   V++ L +   
Sbjct: 135 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 194
Query: 551 VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEMVR 606
            G T +V +H +  +  + D +A+I  G +VETGT EEL  +  A      F+E+V+
Sbjct: 195 EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVK 251

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 17/217 (7%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
            + K  +  I  G+   L+G +G+GK++ + +I     P++G V + GK++       +R 
Sbjct: 30   ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 1087 KIGLVQQEPALFAASIFDNIAYGK--EGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGE 1144
             I  + +E   +       I Y +   G                  ++ L    K    +
Sbjct: 89   LISYLPEEAGAYRN--MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK----D 142
Query: 1145 RGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA----ESECVLQEALERLMRGRTT 1200
            R    S G  +++ IARA++ NP + +LDE TS LD     E   +L++A +    G T 
Sbjct: 143  RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ---EGLTI 199
Query: 1201 VLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 1236
            ++ +H +  +  + D I ++ +G IVE G+  EL  R
Sbjct: 200  LVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236

>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 25/216 (11%)
Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGK--VMIDGKDIRRLNLKSLRL-KIGLV 1091
            +RAG+   LVG +G+GKS+++A   R    T+GK  +   G+ +   +   L L +  L 
Sbjct: 23   VRAGEILHLVGPNGAGKSTLLA---RMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 1092 QQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSG 1151
            QQ+   FA  ++  +   +                 +    AL  A    +G    QLSG
Sbjct: 80   QQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGAL--ALDDKLGRSTNQLSG 129
Query: 1152 GQKQRIAIARAVLK-----NPA--ILLLDEATSALDAESECVLQEALERL-MRGRTTVLV 1203
            G+ QR+ +A  VL+     NPA  +LLLD+  ++LD   +  L + L  L  +G   V+ 
Sbjct: 130  GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQGLAIVMS 189
Query: 1204 AHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
            +H L+ T+R      +++ G+++  G   E+++ P+
Sbjct: 190  SHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 493 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQEALDRLMV 551
           Y  + GE    LSGGQ + + I RA++ NPK++++DE  + +  G +  I    L+    
Sbjct: 147 YDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 552 GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 589
           G T +++ HRL  + N +D + V+  GQ++  G  EE I
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 241

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 22/218 (10%)
Query: 1032 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 1091
            ++ +  G    ++G +GSGKS++I +I  F     G+V  + KDI       L    G+V
Sbjct: 27   SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIV 85
Query: 1092 Q--QEPA-LFAASIFDNIAYGK----EGXXXXXXXXXXXXXXXHGFVSA--------LPN 1136
            +  Q P  L   ++ +N+  G+    E                     A        L +
Sbjct: 86   RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH 145
Query: 1137 AYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVLQEALERLM 1195
             Y    GE    LSGGQ + + I RA++ NP ++++DE  + +    +  +    LE   
Sbjct: 146  LYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 1196 RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 1232
            +G T +++ HRL  +   +D + V+ +G+I+ +G   E
Sbjct: 202  KGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 493 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQEALDRLMV 551
           Y  + GE    LSGGQ + + I RA++ NPK++++DE  + +  G +  I    L+    
Sbjct: 147 YDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 552 GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 589
           G T +++ HRL  + N +D + V+  GQ++  G  EE I
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 241

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 14/208 (6%)
Query: 1038 GQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQ--QEP 1095
            G    ++G +GSGKS++I +I  F     G+V  + KDI       L    G+V+  Q P
Sbjct: 33   GDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIVRTFQTP 91
Query: 1096 A-LFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTP--------VGERG 1146
              L   ++ +N+  G+                       +  A+K             + 
Sbjct: 92   QPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVLQEALERLMRGRTTVLVAH 1205
             +LSGGQ + + I RA++ NP ++++DE  + +    +  +    LE   +G T +++ H
Sbjct: 152  GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEH 211
Query: 1206 RLSTIRG-VDCIGVVQDGRIVEQGSHSE 1232
            RL  +   +D + V+ +G+I+ +G   E
Sbjct: 212  RLDIVLNYIDHLYVMFNGQIIAEGRGEE 239

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 25/194 (12%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
            +F+  N  +  G   A++G +G GKS+++ L+   + P  GK+ +               
Sbjct: 20   LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQ 66
Query: 1087 KIGLVQQE-PALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGF---VSALPNAYKTPV 1142
             IG V Q   + FA S+ D +  G+                 H +   + AL     T +
Sbjct: 67   SIGFVPQFFSSPFAYSVLDIVLMGRS-----THINTFAKPKSHDYQVAMQALDYLNLTHL 121
Query: 1143 GERG-VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGR--T 1199
             +R    LSGGQ+Q I IARA+     ++LLDE TSALD  ++ ++   L  L + +  T
Sbjct: 122  AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMT 181
Query: 1200 TVLVAHRLSTIRGV 1213
             V   H+ + +  +
Sbjct: 182  VVFTTHQPNQVVAI 195

>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 25/216 (11%)
Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGK--VMIDGKDIRRLNLKSLRL-KIGLV 1091
            +RAG+   LVG +G+GKS+++A   R    T+GK  +   G+ +   +   L L +  L 
Sbjct: 23   VRAGEILHLVGPNGAGKSTLLA---RMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 1092 QQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSG 1151
            QQ+   FA  ++  +   +                 +    AL  A    +G    QLSG
Sbjct: 80   QQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGAL--ALDDKLGRSTNQLSG 129
Query: 1152 GQKQRIAIARAVLK-----NPA--ILLLDEATSALDAESECVLQEALERL-MRGRTTVLV 1203
            G+ QR+ +A  VL+     NPA  +LLLD+   +LD   +  L + L  L  +G   V+ 
Sbjct: 130  GEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQGLAIVMS 189
Query: 1204 AHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
            +H L+ T+R      +++ G+++  G   E+++ P+
Sbjct: 190  SHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 19/220 (8%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL-R 1085
            +  D +L I +G+  A++G +G+GKS+++ L+  +  P+ G+  + G+++     K+L R
Sbjct: 26   LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 1086 LKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNA-YKTPVGE 1144
             +  + Q     F  S+ + I  G+                      AL    Y+     
Sbjct: 86   TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRV---- 141
Query: 1145 RGVQLSGGQKQRIAIARAVLK------NPAILLLDEATSALDAESECVLQEALERLMRGR 1198
                LSGG++QR+ +AR + +       P  L LDE TSALD   +      L +L R  
Sbjct: 142  ----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQE 197
Query: 1199 TTVL--VAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVS 1235
               +  V H L+      D I ++  G++V  G+  E+++
Sbjct: 198  PLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 493 YSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-SESIVQEALDRLMV 551
           Y  + GE    LSGGQ + + I RA++ NPK++++D+  + +  G +  I    L+    
Sbjct: 147 YDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAK 202
Query: 552 GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI 589
           G T +++ HRL  + N +D + V+  GQ++  G  EE I
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 241

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/214 (22%), Positives = 96/214 (44%), Gaps = 14/214 (6%)
Query: 1032 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 1091
            ++ +  G    ++G +GSGKS++I +I  F     G+V  + KDI       L    G+V
Sbjct: 27   SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL-YHYGIV 85
Query: 1092 Q--QEPA-LFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTP------- 1141
            +  Q P  L   ++ +N+  G+                       +  A+K         
Sbjct: 86   RTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH 145
Query: 1142 -VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-DAESECVLQEALERLMRGRT 1199
                +  +LSGGQ + + I RA++ NP ++++D+  + +    +  +    LE   +G T
Sbjct: 146  LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGIT 205
Query: 1200 TVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSE 1232
             +++ HRL  +   +D + V+ +G+I+ +G   E
Sbjct: 206  FLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239

>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGK--VMIDGKDIRRLNLKSLRL-KIGLV 1091
            +RAG+   LVG +G+GKS+++A   R    T+GK  +   G+ +   +   L L +  L 
Sbjct: 23   VRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 1092 QQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSG 1151
            QQ+   FA  ++  +   +                 +    AL  A    +G    QLSG
Sbjct: 80   QQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGAL--ALDDKLGRSTNQLSG 129
Query: 1152 GQKQRIAIARAVLK-----NPA--ILLLDEATSALDAESECVLQEALERL-MRGRTTVLV 1203
            G+ QR+ +A  VL+     NPA  +LLLDE  ++LD   +  L + L  L  +G   V  
Sbjct: 130  GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXS 189
Query: 1204 AHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
            +H L+ T+R      +++ G+ +  G   E+++ P+
Sbjct: 190  SHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225

>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGK--VMIDGKDIRRLNLKSLRL-KIGLV 1091
            +RAG+   LVG +G+GKS+++A   R    T+GK  +   G+ +   +   L L +  L 
Sbjct: 23   VRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKGSIQFAGQPLEAWSATKLALHRAYLS 79
Query: 1092 QQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSG 1151
            QQ+   FA  ++  +   +                 +    AL  A    +G    QLSG
Sbjct: 80   QQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGAL--ALDDKLGRSTNQLSG 129
Query: 1152 GQKQRIAIARAVLK-----NPA--ILLLDEATSALDAESECVLQEALERL-MRGRTTVLV 1203
            G+ QR+ +A  VL+     NPA  +LLLDE  ++LD   +  L + L  L  +G   V  
Sbjct: 130  GEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQGLAIVXS 189
Query: 1204 AHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
            +H L+ T+R      +++ G+ +  G   E+++ P+
Sbjct: 190  SHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 46/208 (22%)
Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 1094
            IR G+   +VG +G GK++ + ++    +PT GKV  D          ++  K   ++ E
Sbjct: 379  IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---------LTVAYKPQYIKAE 429
Query: 1095 PALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKT----PVG-----ER 1145
                   +   I   K                         N YKT    P+G     +R
Sbjct: 430  YEGTVYELLSKIDSSKLNS----------------------NFYKTELLKPLGIIDLYDR 467
Query: 1146 GVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG--RTTVL 1202
             V+ LSGG+ QR+AIA  +L++  I LLDE ++ LD E    +  A+  LM    +T ++
Sbjct: 468  NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 527
Query: 1203 VAHRLSTIRGVDCIGVVQDGRIVEQGSH 1230
            V H +  I  V    +V +G   E G H
Sbjct: 528  VEHDVLMIDYVSDRLIVFEG---EPGRH 552

>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Query: 1142 VGERGVQLSGGQKQRIAIARAVLKNPA---ILLLDEATSALDAESECVLQEALERLM-RG 1197
            +G+    LSGG+ QRI +A  + K      + +LDE T  L  E    L E L RL+ RG
Sbjct: 799  LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858
Query: 1198 RTTVLVAHRLSTIRGVDCI------GVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 1246
             T +++ H L  I+  D I      G  + G IV  G+  E+   P     R L+
Sbjct: 859  NTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFLK 913

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 46/208 (22%)
Query: 1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQE 1094
            IR G+   +VG +G GK++ + ++    +PT GKV  D          ++  K   ++ E
Sbjct: 365  IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---------LTVAYKPQYIKAE 415
Query: 1095 PALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKT----PVG-----ER 1145
                   +   I   K                         N YKT    P+G     +R
Sbjct: 416  YEGTVYELLSKIDSSKLNS----------------------NFYKTELLKPLGIIDLYDR 453
Query: 1146 GVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG--RTTVL 1202
             V+ LSGG+ QR+AIA  +L++  I LLDE ++ LD E    +  A+  LM    +T ++
Sbjct: 454  NVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALV 513
Query: 1203 VAHRLSTIRGVDCIGVVQDGRIVEQGSH 1230
            V H +  I  V    +V +G   E G H
Sbjct: 514  VEHDVLMIDYVSDRLIVFEG---EPGRH 538

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 502 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG-RTTVVVAH 560
           V  SGG+K+R  I +  +  P++ +LDE+ S LD  +  +V + ++ L  G R+ ++V H
Sbjct: 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222
Query: 561 --RLSTIRNVDTVAVIQQGQVVETG 583
             R+      D V V+ QG++V++G
Sbjct: 223 YQRILDYIKPDYVHVLYQGRIVKSG 247

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG-RTTVLVAH 1205
            V  SGG+K+R  I +  +  P + +LDE+ S LD ++  V+ + +  L  G R+ ++V H
Sbjct: 163  VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222
Query: 1206 --RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
              R+      D + V+  GRIV+ G  + +    +  Y  L + Q
Sbjct: 223  YQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ 267

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 502 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVG-RTTVVVAH 560
           V  SGG+K+R  I +  +  P++ +LDE+ S LD  +  +V + ++ L  G R+ ++V H
Sbjct: 144 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 203
Query: 561 --RLSTIRNVDTVAVIQQGQVVETG 583
             R+      D V V+ QG++V++G
Sbjct: 204 YQRILDYIKPDYVHVLYQGRIVKSG 228

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRG-RTTVLVAH 1205
            V  SGG+K+R  I +  +  P + +LDE+ S LD ++  V+ + +  L  G R+ ++V H
Sbjct: 144  VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 203
Query: 1206 --RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
              R+      D + V+  GRIV+ G  + +    +  Y  L + Q
Sbjct: 204  YQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ 248

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 1144 ERGVQ-LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL-MRGRTTV 1201
            ER +Q LSGG+ QR+AIA A+L+N      DE +S LD         A+ RL   G++ +
Sbjct: 153  EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 1202 LVAHRLSTI 1210
            +V H L+ +
Sbjct: 213  VVEHDLAVL 221

>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 563
           LSGG K ++A+ARA+L+N  ILLLDE T+ LD  + + +   L+    G T++ ++H   
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISHDSV 606
Query: 564 TIRNV 568
            + NV
Sbjct: 607 FLDNV 611

>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 1205
            LSGG K ++A+ARAVL+N  ILLLDE T+ LD  +   L   L     G T++ ++H
Sbjct: 549  LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 563
           LSGG K ++A+ARA+L+N  ILLLDE T+ LD  + + +   L+    G T++ ++H   
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISHDSV 606
Query: 564 TIRNV 568
            + NV
Sbjct: 607 FLDNV 611

>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 1205
            LSGG K ++A+ARAVL+N  ILLLDE T+ LD  +   L   L     G T++ ++H
Sbjct: 549  LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603

>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 504 LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLS 563
           LSGG K ++A+ARA+L+N  ILLLDE T+ LD  + + +   L+    G T++ ++H   
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN--TCGITSITISHDSV 600
Query: 564 TIRNV 568
            + NV
Sbjct: 601 FLDNV 605

>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 1205
            LSGG K ++A+ARAVL+N  ILLLDE T+ LD  +   L   L     G T++ ++H
Sbjct: 543  LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 597

>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 110/252 (43%), Gaps = 18/252 (7%)
Query: 1007 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 1066
            RG   L  +D     +    + K  + +I  G    L G +G+GK++++ ++  +   T+
Sbjct: 16   RGSHXLIQLDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS 75
Query: 1067 GKVMIDGKDIRRL--NLKSLRLKIGLVQQ---EPALFAASIFDNIAYGK-EGXXXXXXXX 1120
            G V + GK   ++  + +++R  IG V     E       + D +  G  +         
Sbjct: 76   GTVNLFGKXPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDID 135
Query: 1121 XXXXXXXHGFVSALPNAYKTP--VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
                   H  +  +  + K    +G     LS G+KQR+ IARA+   P +L+LDE  + 
Sbjct: 136  DEIRNEAHQLLKLVGXSAKAQQYIG----YLSTGEKQRVXIARALXGQPQVLILDEPAAG 191
Query: 1179 LD---AESECVLQEALERLMRGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 1234
            LD    ES   + ++L         + V H +  I      I +++DG+ ++QG+  +++
Sbjct: 192  LDFIARESLLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
Query: 1235 SRPDGAYSRLLQ 1246
            +  +   SR  Q
Sbjct: 252  TSEN--XSRFFQ 261

>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex Length = 972

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPK---ILLLDEATSALDAGSESIVQEALDR 548
           GY  ++G+    LSGG+ QR+ +A  + +      + +LDE T+ L     + + + L R
Sbjct: 835 GY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 549 LM-VGRTTVVVAHRLSTIRNVDTVAVI------QQGQVVETGTHEELIAKAGAYASLIRF 601
           L+  G T +V+ H L  I+  D +  +      + GQ+V  GT EE+     ++    R+
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTG--RY 951
Query: 602 QEMVRNRDFA 611
            + +  RD A
Sbjct: 952 LKPILERDRA 961

>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra Length = 972

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 492 GYSTQVGERGVQLSGGQKQRIAIARAMLKNPK---ILLLDEATSALDAGSESIVQEALDR 548
           GY  ++G+    LSGG+ QR+ +A  + +      + +LDE T+ L     + + + L R
Sbjct: 835 GYX-KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 549 LM-VGRTTVVVAHRLSTIRNVDTVAVI------QQGQVVETGTHEELIAKAGAYASLIRF 601
           L+  G T +V+ H L  I+  D +  +      + GQ+V  GT EE+     ++    R+
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTG--RY 951
Query: 602 QEMVRNRDFA 611
            + +  RD A
Sbjct: 952 LKPILERDRA 961

>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 15/213 (7%)
Query: 1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALI--ERFYDPTAGKVMIDGKDIRRLN---- 1080
            + K  NL +  G+  AL+G +G+GKS++  ++  +  Y    G++++DG++I  L+    
Sbjct: 18   ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 1081 -LKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYK 1139
              K L L      + P +  A+        K G                  +     +Y 
Sbjct: 78   ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLD-WDESYL 136
Query: 1140 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 1199
            +     G   SGG+K+R  I + ++  P   +LDE  S LD ++  V+   +   MRG  
Sbjct: 137  SRYLNEG--FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV-NAMRGPN 193
Query: 1200 --TVLVAH--RLSTIRGVDCIGVVQDGRIVEQG 1228
               +++ H  R+      D + V+ DGR+V  G
Sbjct: 194  FGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226

>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans Length = 842

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 1142 VGERGVQLSGGQKQRIAIA---RAVLKNPAILLLDEATSALDAESECVLQEALERLMR-G 1197
            +G+   +LSGG+ QRI +A   R   +   + +LDE T+ L       LQ  L +L+  G
Sbjct: 724  LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 1198 RTTVLVAHRLSTIRGVDCI-----GVVQD-GRIVEQGSHSEL 1233
             T + V H++  +   D +     G  +D GR+V QG+ +E+
Sbjct: 784  NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEV 825

>pdb|3UX8|A Chain A, Crystal Structure Of Uvra Length = 670

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 12/126 (9%)
Query: 496 QVGERGVQLSGGQKQRIAIARAMLK--NPKIL-LLDEATSALDAGSESIVQEALDRLM-V 551
           ++G+    LSGG+ QR+ +A  + +  N + L +LDE T+ L     + + + L RL+  
Sbjct: 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 552 GRTTVVVAHRLSTIRNVDTVAVI------QQGQVVETGTHEELIAKAGAYASLIRFQEMV 605
           G T +V+ H L  I+  D +  +      + GQ+V  GT EE+     ++    R+ + +
Sbjct: 596 GDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTG--RYLKPI 653
Query: 606 RNRDFA 611
             RD A
Sbjct: 654 LERDRA 659

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1252
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	0.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	0.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	0.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	0.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-171
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-166
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-167
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-161
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	1e-163
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	1e-153
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	1e-161
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	1e-159
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	1e-151
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	1e-147
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	1e-144
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	1e-138
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-137
2ghi_A	260	Transport protein; multidrug resistance protein, M	1e-132
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	1e-129
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	1e-128
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	1e-126
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	1e-125
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	9e-99
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	9e-99
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	3e-56
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	9e-55
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	6e-48
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	1e-47
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	1e-46
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	2e-45
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	6e-46
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	1e-44
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	1e-43
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	4e-39
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	2e-43
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	1e-38
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	2e-42
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	2e-39
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	7e-42
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	3e-37
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	2e-41
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	9e-36
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	3e-36
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	8e-32
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	3e-35
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	9e-30
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	7e-35
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	6e-30
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	1e-34
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	1e-28
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	1e-34
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	3e-34
1b0u_A	262	Histidine permease; ABC transporter, transport pro	2e-33
1b0u_A	262	Histidine permease; ABC transporter, transport pro	4e-32
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	2e-30
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	7e-28
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	3e-30
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	3e-23
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	3e-30
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	2e-29
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	3e-30
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	2e-29
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	3e-29
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-25
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	4e-30
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	1e-29
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-29
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-29
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	3e-27
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	4e-25
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	3e-29
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	1e-27
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	3e-29
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	3e-28
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	5e-25
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	8e-25
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-28
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	1e-27
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	5e-25
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-24
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	3e-28
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	4e-27
1sgw_A	214	Putative ABC transporter; structural genomics, P p	1e-26
1sgw_A	214	Putative ABC transporter; structural genomics, P p	1e-23
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	1e-24
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	9e-18
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	3e-22
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	6e-15
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	7e-22
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	1e-14
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	2e-21
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	2e-14
1g6h_A	257	High-affinity branched-chain amino acid transport	5e-20
1g6h_A	257	High-affinity branched-chain amino acid transport	1e-17
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	4e-19
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	2e-10
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	5e-17
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	4e-15
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	1e-11
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	4e-09
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	7e-06
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-05
1ji0_A	240	ABC transporter; ATP binding protein, structural g	5e-16
1ji0_A	240	ABC transporter; ATP binding protein, structural g	1e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	1e-07
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	6e-07
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	2e-07
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	3e-07
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	2e-07
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	6e-05
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	1e-06
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	5e-06
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	4e-05
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	6e-05
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	8e-04

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 1648 bits (4269), Expect = 0.0
 Identities = 472/1265 (37%), Positives = 746/1265 (58%), Gaps = 23/1265 (1%)

Query: 2    AEPTTEAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLL 61
            A+           + +K+K+ ++    +F +A   D   M+ G+L A+IHG ++P+  L+
Sbjct: 11   ADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLI 70

Query: 62   FGEMVNGFGKNQT---------------DIHKMTHEVCKYALYFVYLGLIVCFSSYAEIA 106
            FG+M + F                       K+  E+  YA Y+  +G  V   +Y +++
Sbjct: 71   FGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVS 130

Query: 107  CWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNF 166
             W     RQ+  +R+K+  A++ Q++G+FD     G++   ++ D   + + I +K+G F
Sbjct: 131  FWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMF 189

Query: 167  IHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGII 226
               ++TF  G ++GF   W+L L+ +A+ P +  + G++A  L+  T K   +YA AG +
Sbjct: 190  FQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAV 249

Query: 227  AEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALV 286
            AE+ +A +RTV ++ G+ K L  Y++ ++   +LG K  +   + +G  + +   S+AL 
Sbjct: 250  AEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALA 309

Query: 287  FWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKP 346
            FWY    + +     G+  T  FS ++G  S+GQ+  N+ AF+  + A Y++ +II  KP
Sbjct: 310  FWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKP 369

Query: 347  SIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGK 406
            SI     +G   D + GN+EFKN+ FSYPSR +V I +  ++   +G+TVA+VG SG GK
Sbjct: 370  SIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGK 429

Query: 407  STVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP 466
            ST V L++R YDP  G V +D  DI+T+ +R+LR+ IG+V+QEP LFATTI ENI YG+ 
Sbjct: 430  STTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE 489

Query: 467  EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILL 526
            + TM E+E A   ANA+ FI  LP+ + T VGERG QLSGGQKQRIAIARA+++NPKILL
Sbjct: 490  DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILL 549

Query: 527  LDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHE 586
            LDEATSALD  SE++VQ ALD+   GRTT+V+AHRLST+RN D +A    G +VE G H+
Sbjct: 550  LDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHD 609

Query: 587  ELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSY 646
            EL+ + G Y  L+  Q      +  N +    +S     +L   S    S  +R  S   
Sbjct: 610  ELMREKGIYFKLVMTQTAGNEIELGNEA---CKSKDEIDNLDMSSKDSGSSLIRRRSTRK 666

Query: 647  STGADGRIEMVSNAETDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAI 706
            S       +   + +       P   F R+LKLN+ EWPY ++G   ++++G + P F++
Sbjct: 667  SICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSV 726

Query: 707  VMACMIEVFYYRNPASMERKTKEFV-FIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRR 765
            + + ++ VF    P   +R+       +++  G+ + + + +Q + F   GE LT R+R 
Sbjct: 727  IFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRY 786

Query: 766  MMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVA 825
            M+  ++LR +V WFD+ ++ +  +  RLA DAA VK A   R++VI QN+ +L T  I++
Sbjct: 787  MVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIIS 846

Query: 826  FIVEWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAF 885
             I  W+++LL+L   P++ +A   +   L G A    K    +  IA E + N RTV + 
Sbjct: 847  LIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSL 906

Query: 886  NAQNKILSLFCHELRVPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVST 945
              + K  +++   L++P    ++++   GI F  +Q  ++ S A    +G +LV + + T
Sbjct: 907  TREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMT 966

Query: 946  FSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVET 1005
            F  V+ VF  +V  A +V +  S AP+  +   S   +   ++++  ID           
Sbjct: 967  FENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM 1026

Query: 1006 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT 1065
            + G ++   V F YP+RP + V +  +L ++ GQ+ ALVG+SG GKS+V+ L+ERFYDP 
Sbjct: 1027 LEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM 1086

Query: 1066 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEG--ATEAEVVEAAR 1123
            AG V +DGK+I++LN++ LR ++G+V QEP LF  SI +NIAYG      +  E+V AA+
Sbjct: 1087 AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146

Query: 1124 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
             AN+H F+ +LP+ Y T VG++G QLSGGQKQRIAIARA+++ P ILLLDEATSALD ES
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES 1206

Query: 1184 ECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 1243
            E V+QEAL++   GRT +++AHRLSTI+  D I V+Q+G++ E G+H +L+++  G Y  
Sbjct: 1207 EKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFS 1265

Query: 1244 LLQLQ 1248
            ++ +Q
Sbjct: 1266 MVSVQ 1270

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  725 bits (1873), Expect = 0.0
 Identities = 215/610 (35%), Positives = 330/610 (54%), Gaps = 5/610 (0%)

Query: 1    MAEPTTEAAKTLPPEAEKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFL 60
            +  P  +  K    EA  +      F+++       +W   + G   A+I+G   P F +
Sbjct: 668  ICGPHDQDRKLSTKEALDEDVPPASFWRILKLN-STEWPYFVVGIFCAIINGGLQPAFSV 726

Query: 61   LFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLR 120
            +F ++V  F  N             ++L F+ LG+I   + + +   +   GE     LR
Sbjct: 727  IFSKVVGVFT-NGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLR 785

Query: 121  KKYLEAVLKQDVGFFDTDAR-TGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVV 179
                +++L+QDV +FD     TG +   ++ D   V+ A   ++      ++    G+++
Sbjct: 786  YMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIII 845

Query: 180  GFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYS 239
              +  W+L LL +A++P IA AG +    L+G   K ++    +G IA +AI   RTV S
Sbjct: 846  SLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVS 905

Query: 240  YVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVT 299
               E K    Y+ ++Q   +   K     G+    T  +   S+A  F +    +   + 
Sbjct: 906  LTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLM 965

Query: 300  DGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLD 359
                      + + G M++GQ  S    ++K   +   ++ II++ P I    T G   +
Sbjct: 966  TFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPN 1025

Query: 360  EVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP 419
             + GN++F  V F+YP+RP + + +  S+    G+T+A+VG SG GKSTVV L+ERFYDP
Sbjct: 1026 MLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP 1085

Query: 420  NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP--EATMAEVEAAA 477
             AG V LD  +IK L ++WLR Q+G+V+QEP LF  +I ENI YG      +  E+  AA
Sbjct: 1086 MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAA 1145

Query: 478  SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
              AN H FI  LP+ Y+T+VG++G QLSGGQKQRIAIARA+++ P ILLLDEATSALD  
Sbjct: 1146 KEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205

Query: 538  SESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYAS 597
            SE +VQEALD+   GRT +V+AHRLSTI+N D + VIQ G+V E GTH++L+A+ G Y S
Sbjct: 1206 SEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFS 1265

Query: 598  LIRFQEMVRN 607
            ++  Q   + 
Sbjct: 1266 MVSVQAGAKR 1275

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score =  520 bits (1341), Expect = e-171
 Identities = 186/589 (31%), Positives = 301/589 (51%), Gaps = 16/589 (2%)

Query: 17  EKKKEQSLPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVN-GFGKNQTD 75
           +K       F +L+     +    +I   +  +++ +S      L   +++ GFGK    
Sbjct: 4   DKDLSTWQTFRRLWPTIAPF-KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRS 62

Query: 76  IHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFF 135
           +      +    L  + L ++   +SY    C  +   + V T+R++    ++   V FF
Sbjct: 63  V------LLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFF 116

Query: 136 DTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVI 195
           D    TG ++  ++ D+  V  + S  +   +   ++ +   ++ F  +W+L+++ + + 
Sbjct: 117 D-KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLA 175

Query: 196 PGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQ 255
           P ++ A  + +     ++   + +       AEQ +   + V  + G+      +     
Sbjct: 176 PIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSN 235

Query: 256 NTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGG 315
                G K   A  +       IA ++ A V + A           G   T +FS+++  
Sbjct: 236 KMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAG-TITVVFSSMIAL 294

Query: 316 MSLGQSFSNL-GAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSY 374
           M   +S +N+   F +G AA   L  I+  +          R +D   G++EF+NVTF+Y
Sbjct: 295 MRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK---DEGKRVIDRATGDLEFRNVTFTY 351

Query: 375 PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTL 434
           P R +V   R+ ++  PAGKTVA+VG SGSGKST+ SLI RFYD + GH+L+D  D++  
Sbjct: 352 PGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREY 410

Query: 435 QLRWLRDQIGLVNQEPALFATTILENILYGKPEA-TMAEVEAAASAANAHSFITLLPNGY 493
            L  LR+Q+ LV+Q   LF  T+  NI Y + E  +  ++E AA  A A  FI  + NG 
Sbjct: 411 TLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGL 470

Query: 494 STQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR 553
            T +GE GV LSGGQ+QRIAIARA+L++  IL+LDEATSALD  SE  +Q ALD L   R
Sbjct: 471 DTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR 530

Query: 554 TTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 602
           T++V+AHRLSTI   D + V++ G +VE GTH EL+A+ G YA L + Q
Sbjct: 531 TSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score =  505 bits (1303), Expect = e-166
 Identities = 172/589 (29%), Positives = 303/589 (51%), Gaps = 13/589 (2%)

Query: 662  TDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMI-EVFYYRNP 720
             + K+ +    F RL    AP     I+  I  +L+         ++  ++ + F   + 
Sbjct: 2    HNDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR 61

Query: 721  ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 780
            + +       + + I  G    +   I  Y  S +   +   +RR +   ++   V +FD
Sbjct: 62   SVLLWMPLVVIGLMILRG----ITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFD 117

Query: 781  EEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 840
            +   ++  + +R+  D+  V S+ +  +  +++   S++  FI+ F   W++S++++   
Sbjct: 118  K--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLA 175

Query: 841  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELR 900
            P++ +A        +  + +      + +  A + +   + V  F  Q      F     
Sbjct: 176  PIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSN 235

Query: 901  VPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTA 960
              + Q ++    + I   I Q     + A +L+           T   +  VF  ++   
Sbjct: 236  KMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALM 295

Query: 961  NSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYP 1020
              +    ++  +  RG  +  ++F+ LD  +  + D+     ++   G++E R+V F YP
Sbjct: 296  RPLKSLTNVNAQFQRGMAACQTLFAILD--SEQEKDEG-KRVIDRATGDLEFRNVTFTYP 352

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
             R +V   ++ NL+I AG++ ALVG SGSGKS++ +LI RFYD   G +++DG D+R   
Sbjct: 353  GR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT 411

Query: 1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGK-EGATEAEVVEAARAANVHGFVSALPNAYK 1139
            L SLR ++ LV Q   LF  ++ +NIAY + E  +  ++ EAAR A    F++ + N   
Sbjct: 412  LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLD 471

Query: 1140 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 1199
            T +GE GV LSGGQ+QRIAIARA+L++  IL+LDEATSALD ESE  +Q AL+ L + RT
Sbjct: 472  TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRT 531

Query: 1200 TVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            ++++AHRLSTI   D I VV+DG IVE+G+HSEL+++  G Y++L ++Q
Sbjct: 532  SLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHKMQ 579

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score =  507 bits (1308), Expect = e-167
 Identities = 178/585 (30%), Positives = 294/585 (50%), Gaps = 26/585 (4%)

Query: 26  FFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVN-GFGKNQTDIHKMTHEVC 84
           F +L+++   Y    ++  ++  VI+ ++      L   +++ GFG  +++         
Sbjct: 13  FKRLWTYIRLY-KAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESN--------- 62

Query: 85  KYALYFVYLGLIVCF-----SSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDA 139
              L  +   ++        S +A   C  +     V  +R++     +   V FFD   
Sbjct: 63  --FLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFD-QE 119

Query: 140 RTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIA 199
            TG ++  ++ D+  V  A S  + + +   ++ +  L + F ++W+L+L+ I V P +A
Sbjct: 120 STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVA 179

Query: 200 FAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLK 259
           FA    +     ++   + +  +    AEQ +   + V SY G+      +     +  +
Sbjct: 180 FAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQ 239

Query: 260 LGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLG 319
              K   A+ +       IA ++   V + A V         G  FT +FSA+ G M   
Sbjct: 240 QTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPG-TFTVVFSAMFGLMRPL 298

Query: 320 QSFSNLGA-FSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRP 378
           ++ +++ + F +G AA   L  ++  +             + VNG ++ K+VTF+Y  + 
Sbjct: 299 KALTSVTSEFQRGMAACQTLFGLMDLETER---DNGKYEAERVNGEVDVKDVTFTYQGK- 354

Query: 379 DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW 438
           +       S   P GKTVA+VG SGSGKST+ +L  RFYD ++G + LD  D++  +L  
Sbjct: 355 EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTN 414

Query: 439 LRDQIGLVNQEPALFATTILENILYG-KPEATMAEVEAAASAANAHSFITLLPNGYSTQV 497
           LR    LV+Q   LF  TI  NI Y  + E T  ++E AA  A+A  FI  +P G  T +
Sbjct: 415 LRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVI 474

Query: 498 GERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVV 557
           GE G  LSGGQ+QR+AIARA+L++  +L+LDEATSALD  SE  +Q ALD L   +T +V
Sbjct: 475 GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLV 534

Query: 558 VAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 602
           +AHRLSTI   D + V+ +G+++E G H +L+A+ GAYA L R Q
Sbjct: 535 IAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score =  493 bits (1272), Expect = e-161
 Identities = 157/589 (26%), Positives = 277/589 (47%), Gaps = 13/589 (2%)

Query: 662  TDRKNPAPDGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMI-EVFYYRNP 720
            +   + +    F RL           ++  I  V++         ++  ++ E F     
Sbjct: 2    SLHSDESNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAES 61

Query: 721  ASMERKTKEFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFD 780
              +       + +    G    ++     Y  S +  N+  ++RR +    +   V +FD
Sbjct: 62   NFLRILPFMILGLMFVRG----LSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFD 117

Query: 781  EEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTY 840
            +   ++  + +R+  D+  V  A +  +  I++   S++    + F   W++SL+++   
Sbjct: 118  Q--ESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVA 175

Query: 841  PLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELR 900
            P++  A        +  + +   A    +  A + +   + V ++  Q      F     
Sbjct: 176  PVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSN 235

Query: 901  VPQSQTLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTA 960
              + QT++      I   + Q     +   +L+       +   T      VF  +    
Sbjct: 236  SMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLM 295

Query: 961  NSVAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYP 1020
              +    S+  E  RG  +  ++F  +D  T  D         E + GE++++ V F Y 
Sbjct: 296  RPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG---KYEAERVNGEVDVKDVTFTYQ 352

Query: 1021 SRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN 1080
             + +       +  I  G++ ALVG SGSGKS++  L  RFYD  +G + +DG D+R   
Sbjct: 353  GK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK 411

Query: 1081 LKSLRLKIGLVQQEPALFAASIFDNIAYGKEG-ATEAEVVEAARAANVHGFVSALPNAYK 1139
            L +LR    LV Q   LF  +I +NIAY  EG  T  ++ +AAR A+   F+  +P    
Sbjct: 412  LTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLD 471

Query: 1140 TPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 1199
            T +GE G  LSGGQ+QR+AIARA+L++  +L+LDEATSALD ESE  +Q AL+ L + +T
Sbjct: 472  TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKT 531

Query: 1200 TVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
             +++AHRLSTI   D I VV +G I+E+G H++L+++ DGAY++L ++Q
Sbjct: 532  VLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ-DGAYAQLHRIQ 579

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score =  486 bits (1254), Expect = e-163
 Identities = 99/258 (38%), Positives = 149/258 (57%), Gaps = 4/258 (1%)

Query: 351 DPTN-GRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTV 409
            P +       + G ++F++V+F+YP+ P+V + +  +     GK  A+VG +GSGKSTV
Sbjct: 2   SPLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61

Query: 410 VSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPE-A 468
            +L++  Y P  G VLLD   +      +L  Q+  V QEP LF  +  ENI YG     
Sbjct: 62  AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTP 121

Query: 469 TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD 528
           TM E+ A A  + AH FI+  P GY T+VGE G QLSGGQ+Q +A+ARA+++ P++L+LD
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181

Query: 529 EATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHE 586
            ATSALDAG++  VQ  L        RT +++  +LS       +  +++G V E GTH 
Sbjct: 182 NATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHL 241

Query: 587 ELIAKAGAYASLIRFQEM 604
           +L+ + G Y S++     
Sbjct: 242 QLMERGGCYRSMVEALAA 259

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score =  459 bits (1184), Expect = e-153
 Identities = 97/259 (37%), Positives = 148/259 (57%), Gaps = 5/259 (1%)

Query: 993  IDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKS 1052
            + P      P   ++G ++ + V FAYP+ P+V V +     +  G+  ALVG +GSGKS
Sbjct: 1    MSPLSGSLAP-LNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59

Query: 1053 SVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK-E 1111
            +V AL++  Y PT GKV++DG+ + + +   L  ++  V QEP LF  S  +NIAYG   
Sbjct: 60   TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119

Query: 1112 GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILL 1171
              T  E+   A  +  H F+S  P  Y T VGE G QLSGGQ+Q +A+ARA+++ P +L+
Sbjct: 120  TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179

Query: 1172 LDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGS 1229
            LD ATSALDA ++  +Q  L        RT +L+  +LS       I  +++G + EQG+
Sbjct: 180  LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239

Query: 1230 HSELVSRPDGAYSRLLQLQ 1248
            H +L+ R  G Y  +++  
Sbjct: 240  HLQLMER-GGCYRSMVEAL 257

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score =  493 bits (1272), Expect = e-161
 Identities = 182/583 (31%), Positives = 273/583 (46%), Gaps = 14/583 (2%)

Query: 28  QLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGF--GKNQTDIHKMTHEVCK 85
           +   F   Y    +    +  +I      +  LL    ++G       T   K+ H    
Sbjct: 4   RYLQFVKPY-KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIA 62

Query: 86  YALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIV 145
             +      ++     +       +T  + +  +RKK    +      F+  + + G ++
Sbjct: 63  IGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYA-NNQVGQVI 121

Query: 146 FSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLY 205
             V  D    +D I   + N      T +  L + F    +L L ++ + P       ++
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181

Query: 206 AYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAG 265
              L  LT +  ++ A       + +  +  V S+  E     ++     N L    K  
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241

Query: 266 MAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNL 325
                       +  +   +V         +G    G    A    +     L      L
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVG-TLAAFVGYL---ELLFGPLRRL 297

Query: 326 GAFS----KGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVI 381
            A      +  A+  ++ ++I +   I ++    + ++   G I+  +V+F Y      I
Sbjct: 298 VASFTTLTQSFASMDRVFQLIDEDYDI-KNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPI 356

Query: 382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 441
           + +D ++    G+TVA VG SG GKST+++LI RFYD  +G +L+D  +IK      LR+
Sbjct: 357 L-KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415

Query: 442 QIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERG 501
           QIGLV Q+  LF+ T+ ENIL G+P AT  EV  AA  ANAH FI  LP GY T+VGERG
Sbjct: 416 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERG 475

Query: 502 VQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHR 561
           V+LSGGQKQR++IAR  L NP IL+LDEATSALD  SESI+QEALD L   RTT++VAHR
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHR 535

Query: 562 LSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQEM 604
           LSTI + D + VI+ G +VETGTH ELIAK GAY  L   Q +
Sbjct: 536 LSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQNL 578

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score =  487 bits (1256), Expect = e-159
 Identities = 178/582 (30%), Positives = 286/582 (49%), Gaps = 11/582 (1%)

Query: 673  FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVF 732
              R L+   P         I  ++   I     +++   I+     +  + + K      
Sbjct: 2    IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61

Query: 733  IYIGA--GLYAV--VAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSL 788
                A      V      I+ Y        +   +R+ +   +      ++    +    
Sbjct: 62   AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQ 119

Query: 789  VAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANF 848
            V +R+  D    K  I   +  I  +  +++ +  + F ++ +++L  L  +P  +L  +
Sbjct: 120  VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179

Query: 849  AQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR 908
                 L+    + ++A A+      E V  I  V +F  ++     F  +     ++ L+
Sbjct: 180  VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239

Query: 909  RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVT-ANSVAETV 967
             +      F            +++  G +L   G  T   +   FV  +      +   V
Sbjct: 240  HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLA-AFVGYLELLFGPLRRLV 298

Query: 968  SLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVV 1027
            +    + +   S+  VF  +D    I  +   A+P+E  +G I++ HV F Y    +  +
Sbjct: 299  ASFTTLTQSFASMDRVFQLIDEDYDI-KNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPI 356

Query: 1028 FKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087
             KD NL I  G++ A VG SG GKS++I LI RFYD T+G+++IDG +I+     SLR +
Sbjct: 357  LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416

Query: 1088 IGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGV 1147
            IGLVQQ+  LF+ ++ +NI  G+  AT+ EVVEAA+ AN H F+  LP  Y T VGERGV
Sbjct: 417  IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV 476

Query: 1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRL 1207
            +LSGGQKQR++IAR  L NP IL+LDEATSALD ESE ++QEAL+ L + RTT++VAHRL
Sbjct: 477  KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRL 536

Query: 1208 STIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQH 1249
            STI   D I V+++G IVE G+H EL+++  GAY  L  +Q+
Sbjct: 537  STITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYSIQN 577

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score =  452 bits (1165), Expect = e-151
 Identities = 106/244 (43%), Positives = 158/244 (64%), Gaps = 2/244 (0%)

Query: 360 EVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP 419
             + +I F+N+ F Y     VI   + ++    G+ + +VG SGSGKST+  LI+RFY P
Sbjct: 3   HHHHDITFRNIRFRYKPDSPVI-LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61

Query: 420 NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASA 479
             G VL+D  D+      WLR Q+G+V Q+  L   +I++NI    P  ++ +V  AA  
Sbjct: 62  ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 121

Query: 480 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
           A AH FI+ L  GY+T VGE+G  LSGGQ+QRIAIARA++ NPKIL+ DEATSALD  SE
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181

Query: 540 SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA-GAYASL 598
            ++   + ++  GRT +++AHRLST++N D + V+++G++VE G H+EL+++    Y+ L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241

Query: 599 IRFQ 602
            + Q
Sbjct: 242 YQLQ 245

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score =  441 bits (1138), Expect = e-147
 Identities = 113/243 (46%), Positives = 158/243 (65%), Gaps = 1/243 (0%)

Query: 1006 IRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPT 1065
               +I  R++ F Y     V+   + NL I+ G+   +VG SGSGKS++  LI+RFY P 
Sbjct: 4    HHHDITFRNIRFRYKPDSPVI-LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 62

Query: 1066 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAA 1125
             G+V+IDG D+   +   LR ++G+V Q+  L   SI DNI+    G +  +V+ AA+ A
Sbjct: 63   NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLA 122

Query: 1126 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 1185
              H F+S L   Y T VGE+G  LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE 
Sbjct: 123  GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182

Query: 1186 VLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 1245
            V+   + ++ +GRT +++AHRLST++  D I V++ G+IVEQG H EL+S P+  YS L 
Sbjct: 183  VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242

Query: 1246 QLQ 1248
            QLQ
Sbjct: 243  QLQ 245

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score =  434 bits (1119), Expect = e-144
 Identities = 111/239 (46%), Positives = 156/239 (65%), Gaps = 3/239 (1%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +  ++V F+Y     +   RD S        +A  G SG GKST+ SL+ERFY P AG +
Sbjct: 2   LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPEATMAEVEAAASAANAH 483
            +D   I  + L   R QIG V+Q+ A+ A TI EN+ YG + + T  ++      A A 
Sbjct: 60  TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
           SF+  +P+  +T+VGERGV++SGGQ+QR+AIARA L+NPKIL+LDEAT++LD+ SES+VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179

Query: 544 EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 602
           +ALD LM GRTT+V+AHRLSTI + D +  I++GQ+  +G H EL+A    YA  +  Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score =  418 bits (1078), Expect = e-138
 Identities = 107/240 (44%), Positives = 160/240 (66%), Gaps = 4/240 (1%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +  RHVDFAY     +   +D +   +     A  G SG GKS++ +L+ERFY PTAG++
Sbjct: 2    LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEG-ATEAEVVEAARAANVH 1128
             IDG+ I  ++L++ R +IG V Q+ A+ A +I +N+ YG EG  T+ ++ +    A   
Sbjct: 60   TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119

Query: 1129 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 1188
             FV  +P+   T VGERGV++SGGQ+QR+AIARA L+NP IL+LDEAT++LD+ESE ++Q
Sbjct: 120  SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179

Query: 1189 EALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            +AL+ LM+GRTT+++AHRLSTI   D I  ++ G+I   G H+ELV+     Y++ +  Q
Sbjct: 180  KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score =  418 bits (1077), Expect = e-137
 Identities = 104/254 (40%), Positives = 161/254 (63%), Gaps = 1/254 (0%)

Query: 349 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKST 408
           ++  +      +   NIEF +V FSYP + +    +  + F P+G T A+VG +GSGKST
Sbjct: 2   LESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKST 61

Query: 409 VVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEA 468
           +  L+ RFYD   G + +   ++       +R  IG+V Q+  LF  TI  NILYGK +A
Sbjct: 62  IAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA 120

Query: 469 TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD 528
           T  EV  A  +A  + FI  LP  + T VG +G++LSGG++QRIAIAR +LK+PKI++ D
Sbjct: 121 TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFD 180

Query: 529 EATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 588
           EATS+LD+ +E + Q+A++ L   RT +++AHRLSTI + +++ ++ +G++VE GTH++L
Sbjct: 181 EATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDL 240

Query: 589 IAKAGAYASLIRFQ 602
           +   G YA +   Q
Sbjct: 241 LKLNGEYAEMWNMQ 254

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score =  404 bits (1041), Expect = e-132
 Identities = 104/253 (41%), Positives = 164/253 (64%), Gaps = 2/253 (0%)

Query: 996  DDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVI 1055
                    +     IE   V+F+YP + +    K  N  I +G + ALVG +GSGKS++ 
Sbjct: 4    SFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA 63

Query: 1056 ALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATE 1115
             L+ RFYD   G + I GK++ + N  S+R  IG+V Q+  LF  +I  NI YGK  AT+
Sbjct: 64   KLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATD 122

Query: 1116 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 1175
             EV++A ++A ++ F+ ALP  + T VG +G++LSGG++QRIAIAR +LK+P I++ DEA
Sbjct: 123  EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEA 182

Query: 1176 TSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 1235
            TS+LD+++E + Q+A+E L + RT +++AHRLSTI   + I ++  G+IVE+G+H +L+ 
Sbjct: 183  TSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242

Query: 1236 RPDGAYSRLLQLQ 1248
              +G Y+ +  +Q
Sbjct: 243  L-NGEYAEMWNMQ 254

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score =  398 bits (1024), Expect = e-129
 Identities = 127/294 (43%), Positives = 177/294 (60%), Gaps = 12/294 (4%)

Query: 318 LGQSFSNLGAFS-------KGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNV 370
           +G S  +    S               + +++K++  + +D      L    G IEF+NV
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMFIDMENMFDLLKEETEV-KDLPGAGPLRFQKGRIEFENV 59

Query: 371 TFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNV 429
            FSY   R      +D S     G+T+A+VG SG+GKST++ L+ RFYD ++G + +D  
Sbjct: 60  HFSYADGRE---TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQ 116

Query: 430 DIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLL 489
           DI  +    LR  IG+V Q+  LF  TI +NI YG+  A   EVEAAA AA  H  I   
Sbjct: 117 DISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAF 176

Query: 490 PNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL 549
           P GY TQVGERG++LSGG+KQR+AIAR +LK P I+LLDEATSALD  +E  +Q +L ++
Sbjct: 177 PEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV 236

Query: 550 MVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQE 603
              RTT+VVAHRLST+ N D + VI+ G +VE G HE L+++ G YA + + Q+
Sbjct: 237 CANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQ 290

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score =  394 bits (1014), Expect = e-128
 Identities = 125/279 (44%), Positives = 176/279 (63%), Gaps = 6/279 (2%)

Query: 973  IIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAY-PSRPDVVVFKDF 1031
                   + ++F  L   T +  D P A P+   +G IE  +V F+Y   R      +D 
Sbjct: 18   GSHMFIDMENMFDLLKEETEV-KDLPGAGPLRFQKGRIEFENVHFSYADGRE---TLQDV 73

Query: 1032 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLV 1091
            +  +  GQ+ ALVG SG+GKS+++ L+ RFYD ++G + IDG+DI ++   SLR  IG+V
Sbjct: 74   SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVV 133

Query: 1092 QQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSG 1151
             Q+  LF  +I DNI YG+  A   EV  AA+AA +H  + A P  Y+T VGERG++LSG
Sbjct: 134  PQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSG 193

Query: 1152 GQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR 1211
            G+KQR+AIAR +LK P I+LLDEATSALD  +E  +Q +L ++   RTT++VAHRLST+ 
Sbjct: 194  GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVV 253

Query: 1212 GVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHH 1250
              D I V++DG IVE+G H  L+SR  G Y+ + QLQ  
Sbjct: 254  NADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score =  400 bits (1030), Expect = e-126
 Identities = 170/610 (27%), Positives = 293/610 (48%), Gaps = 51/610 (8%)

Query: 13  PPEAEKKKEQSLPFFQLFSFADKYDWCLM--IFGSLGAVIHGSSMPVFFLLFGEMVNGFG 70
             E    K  +    +L  +   + + L+        + I G   P    L G+ ++   
Sbjct: 12  ILEKPALKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSP---YLIGKTIDVVF 68

Query: 71  KNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQ 130
             +     +      Y L    +  +     + +    +   +  V  LRK+  E + + 
Sbjct: 69  VPR-RFDLLPR----YMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRV 123

Query: 131 DVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALL 190
            VGFFD     GDI+  V  D   + + +   +  F   + T    +++ F     L+L+
Sbjct: 124 PVGFFDRTPH-GDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLV 182

Query: 191 SIAVIPGIAFAGGLYAYTLTGLTSKSRESYA---------NAGIIAEQAIAQVRTVYSYV 241
           +++++P       +       ++S++R+ +          N  I  E+ I+ +  +  + 
Sbjct: 183 TLSIVPLTVLITQI-------VSSQTRKYFYENQRVLGQLNGII--EEDISGLTVIKLFT 233

Query: 242 GESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDG 301
            E K +  +    ++  K+G KA +  G+       +  + +AL+  + G      +   
Sbjct: 234 REEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITV 293

Query: 302 G---------KAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPSIIQDP 352
           G         + FT   + +    ++ Q            A+  ++ EI+  +    +D 
Sbjct: 294 GTIATFIGYSRQFTRPLNELSNQFNMIQM---------ALASAERIFEILDLEE--EKDD 342

Query: 353 TNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSL 412
            +   L EV G IEFKNV FSY       + +D +     G+ VA+VG +GSGK+T+V+L
Sbjct: 343 PDAVELREVRGEIEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNL 400

Query: 413 IERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAE 472
           + RFYD + G +L+D +DI+ ++   LR  IG+V Q+  LF+TT+ EN+ YG P AT  E
Sbjct: 401 LMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEE 460

Query: 473 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 532
           ++ AA   ++  FI  LP GY T + + G  LS GQ+Q +AI RA L NPKIL+LDEATS
Sbjct: 461 IKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATS 520

Query: 533 ALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKA 592
            +D  +E  +Q A+ +LM G+T++++AHRL+TI+N D + V++ G++VE G H+ELI K 
Sbjct: 521 NVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKR 580

Query: 593 GAYASLIRFQ 602
           G Y  L   Q
Sbjct: 581 GFYYELFTSQ 590

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score =  397 bits (1022), Expect = e-125
 Identities = 177/587 (30%), Positives = 286/587 (48%), Gaps = 32/587 (5%)

Query: 673  FLRLLKLNAPEWPY---SIMGAIGSVLSGFIGPTFAIVMACMI-EVFYYRNPASMERKTK 728
              RLL    P         +    S + G + P    ++   I  VF  R    + R   
Sbjct: 25   LRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSP---YLIGKTIDVVFVPRRFDLLPRYML 81

Query: 729  EFVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSL 788
                IY    L     + +Q      + +++  R+R+ +   + R  VG+FD   H   +
Sbjct: 82   ILGTIYALTSL----LFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDII 137

Query: 789  VAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPL-LVLAN 847
               R+  D  ++ + + + I      + +L  + I+ F V   +SL+ L   PL +++  
Sbjct: 138  S--RVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQ 195

Query: 848  FAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTL 907
                 + K F  +         +I  E +S +  +  F  + K +  F        +++L
Sbjct: 196  IVSSQTRKYFYENQRVLGQLNGIIE-EDISGLTVIKLFTREEKEMEKFDR-----VNESL 249

Query: 908  RRSLT-----AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANS 962
            R+  T     +G+L  +     +   ALI  +G  L  K + T    I  F+        
Sbjct: 250  RKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVG-TIATFIGYSRQFTR 308

Query: 963  -VAETVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPS 1021
             + E  +    I     S   +F  LD     + DDPDA  +  +RGEIE ++V F+Y  
Sbjct: 309  PLNELSNQFNMIQMALASAERIFEILD--LEEEKDDPDAVELREVRGEIEFKNVWFSY-- 364

Query: 1022 RPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNL 1081
                 V KD    I+ GQ  ALVG +GSGK++++ L+ RFYD   G++++DG DIR++  
Sbjct: 365  DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR 424

Query: 1082 KSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTP 1141
             SLR  IG+V Q+  LF+ ++ +N+ YG  GAT+ E+ EAA+  +   F+  LP  Y+T 
Sbjct: 425  SSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETV 484

Query: 1142 VGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTV 1201
            + + G  LS GQ+Q +AI RA L NP IL+LDEATS +D ++E  +Q A+ +LM G+T++
Sbjct: 485  LTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSI 544

Query: 1202 LVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            ++AHRL+TI+  D I V++DG IVE G H EL+ +  G Y  L   Q
Sbjct: 545  IIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFTSQ 590

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score =  326 bits (838), Expect = 9e-99
 Identities = 137/439 (31%), Positives = 222/439 (50%), Gaps = 18/439 (4%)

Query: 172 TFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAI 231
            F+ G+V+      +L+ + I +IP I             L  K +ES      +  + +
Sbjct: 150 LFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENL 209

Query: 232 AQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAG 291
             VR V ++  E     ++  A ++  +    A       L     I  M    V W+ G
Sbjct: 210 LGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGG 269

Query: 292 VFIRNGVTDGGK--AFT-----AIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQ 344
           V +RN   + G   A+T      +FS ++ G  L           +  A+  +++E++ +
Sbjct: 270 VLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNF-------IVRASASAKRVLEVLNE 322

Query: 345 KPSIIQDPTNGRCLDEVNGNIEFKNVTFSYP-SRPDVIIFRDFSIFFPAGKTVAVVGGSG 403
           KP+I ++  N   L  V G++ F+NV F Y  +   V+     +     G  VAV+G +G
Sbjct: 323 KPAI-EEADNALALPNVEGSVSFENVEFRYFENTDPVL--SGVNFSVKPGSLVAVLGETG 379

Query: 404 SGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILY 463
           SGKST+++LI R  DP  G V +D +D++T++L+ LR  I  V QE  LF+ TI EN+ +
Sbjct: 380 SGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKW 439

Query: 464 GKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK 523
           G+ +AT  E+  AA  A  H FI  LP GY ++V   G   SGGQKQR++IARA++K PK
Sbjct: 440 GREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK 499

Query: 524 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETG 583
           +L+LD+ TS++D  +E  + + L R   G TT ++  ++ T    D + V+ +G+V   G
Sbjct: 500 VLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFG 559

Query: 584 THEELIAKAGAYASLIRFQ 602
           TH+EL+     Y  +   Q
Sbjct: 560 THKELLEHCKPYREIYESQ 578

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score =  326 bits (838), Expect = 9e-99
 Identities = 132/510 (25%), Positives = 238/510 (46%), Gaps = 26/510 (5%)

Query: 735  IGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHN----SSLVA 790
            +   L   V  +    F S   +N    +RR +   +L      F     N    SSL+ 
Sbjct: 70   LIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLS-----FSISNVNRFHTSSLIT 124

Query: 791  ARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANF-- 848
             RL  D   +++ +   + ++++     +   ++A  +  ++S +++   P +VL     
Sbjct: 125  -RLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWL 183

Query: 849  ---AQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQ 905
                  L  K       ++  + + +  E +  +R V AF  +      F       +  
Sbjct: 184  TKKGNPLFRKIQ-----ESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRS 238

Query: 906  TLRRSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAE 965
             +           +  F ++     +LW+G  LV         ++     L+    S+  
Sbjct: 239  IISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMM 298

Query: 966  TVSLAPEIIRGGESVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYP--SRP 1023
              ++   I+R   S   V   L+    I+ +  +A  +  + G +   +V+F Y   + P
Sbjct: 299  IGNILNFIVRASASAKRVLEVLNEKPAIE-EADNALALPNVEGSVSFENVEFRYFENTDP 357

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 1083
               V    N  ++ G   A++G +GSGKS+++ LI R  DP  G+V +D  D+R + LK 
Sbjct: 358  ---VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKD 414

Query: 1084 LRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVG 1143
            LR  I  V QE  LF+ +I +N+ +G+E AT+ E+VEAA+ A +H F+ +LP  Y + V 
Sbjct: 415  LRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE 474

Query: 1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLV 1203
              G   SGGQKQR++IARA++K P +L+LD+ TS++D  +E  + + L+R  +G TT ++
Sbjct: 475  RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFII 534

Query: 1204 AHRLSTIRGVDCIGVVQDGRIVEQGSHSEL 1233
              ++ T    D I V+ +G++   G+H EL
Sbjct: 535  TQKIPTALLADKILVLHEGKVAGFGTHKEL 564

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score =  199 bits (508), Expect = 3e-56
 Identities = 54/254 (21%), Positives = 114/254 (44%), Gaps = 7/254 (2%)

Query: 996  DDPDAEPVET--IRGEIELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKS 1052
            ++   +  +     G++ ++ +   Y        + ++ +  I  GQ   L+G +GSGKS
Sbjct: 4    ENSHVKKDDIWPSGGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKS 61

Query: 1053 SVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEG 1112
            ++++   R  +   G++ IDG     + L+  R   G++ Q+  +F+ +   N+      
Sbjct: 62   TLLSAFLRLLNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAA- 119

Query: 1113 ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLL 1172
             ++ E+ + A    +   +   P      + + G  LS G KQ + +AR+VL    ILLL
Sbjct: 120  HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL 179

Query: 1173 DEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSE 1232
            DE ++ LD  +  +++  L++     T +L   R+  +   D   V+++ ++ +  S  E
Sbjct: 180  DEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILE 239

Query: 1233 LVSRPDGAYSRLLQ 1246
            L   P   +     
Sbjct: 240  LYHYPADRFVAGFI 253

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score =  195 bits (497), Expect = 9e-55
 Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 14/278 (5%)

Query: 362 NGNIEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
            G +  K++T  Y        I  + S     G+ V ++G +GSGKST++S   R  +  
Sbjct: 17  GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT- 73

Query: 421 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP--EATMAEVEAAAS 478
            G + +D V   ++ L   R   G++ Q+  +F+ T  +N+    P    +  E+   A 
Sbjct: 74  EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL---DPNAAHSDQEIWKVAD 130

Query: 479 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 538
                S I   P      + + G  LS G KQ + +AR++L   KILLLDE ++ LD  +
Sbjct: 131 EVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT 190

Query: 539 ESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASL 598
             I++  L +     T ++   R+  +   D   VI++ +V +  +  EL          
Sbjct: 191 YQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPAD---- 246

Query: 599 IRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRS 636
            RF          N    +  +T +        +  R 
Sbjct: 247 -RFVAGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQ 283

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score =  170 bits (432), Expect = 6e-48
 Identities = 63/242 (26%), Positives = 110/242 (45%), Gaps = 21/242 (8%)

Query: 1007 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTA 1066
              E+ + +V   +       V KD N +I  GQ  A+ G++G+GK+S++ +I    +P+ 
Sbjct: 4    TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62

Query: 1067 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATE--AEVVEAARA 1124
            GK+   G+             I    Q   +   +I +NI +G          V++A   
Sbjct: 63   GKIKHSGR-------------ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKAC-- 107

Query: 1125 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE-S 1183
                   S         +GE G+ LSGGQ+ RI++ARAV K+  + LLD     LD    
Sbjct: 108  QLEEDI-SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166

Query: 1184 ECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSR 1243
            + + +  + +LM  +T +LV  ++  ++  D I ++ +G     G+ SEL +     +S 
Sbjct: 167  KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSS 225

Query: 1244 LL 1245
             L
Sbjct: 226  KL 227

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score =  169 bits (430), Expect = 1e-47
 Identities = 58/243 (23%), Positives = 111/243 (45%), Gaps = 24/243 (9%)

Query: 362 NGNIEFKNVTFSY-PSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
              +  +NVT  +      V+  +D +     G+ +AV G +G+GK++++ +I    +P+
Sbjct: 4   TTEVVMENVTAFWEEGGTPVL--KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61

Query: 421 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP--EATMAEV-EAAA 477
            G +                 +I   +Q   +   TI ENI++G    E     V +A  
Sbjct: 62  EGKIKH-------------SGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQ 108

Query: 478 SAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
              +    I+      +  +GE G+ LSGGQ+ RI++ARA+ K+  + LLD     LD  
Sbjct: 109 LEED----ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVL 164

Query: 538 -SESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYA 596
             + I +  + +LM  +T ++V  ++  ++  D + ++ +G     GT  EL      ++
Sbjct: 165 TEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 224

Query: 597 SLI 599
           S +
Sbjct: 225 SKL 227

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score =  166 bits (422), Expect = 1e-46
 Identities = 77/247 (31%), Positives = 122/247 (49%), Gaps = 29/247 (11%)

Query: 1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
              I +R+  F + +R D          I  G   A+VG  G GKSS+++ +    D   G
Sbjct: 2    NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60

Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATE--AEVVEAARAA 1125
             V I G              +  V Q+  +   S+ +NI +G +        V++A   A
Sbjct: 61   HVAIKGS-------------VAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQAC--A 105

Query: 1126 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE--- 1182
             +      LP+  +T +GE+GV LSGGQKQR+++ARAV  N  I L D+  SA+DA    
Sbjct: 106  LLPDL-EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164

Query: 1183 ---SECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDG 1239
                  +     + +++ +T +LV H +S +  VD I V+  G+I E GS+ EL++R DG
Sbjct: 165  HIFENVIGP---KGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DG 220

Query: 1240 AYSRLLQ 1246
            A++  L+
Sbjct: 221  AFAEFLR 227

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score =  163 bits (414), Expect = 2e-45
 Identities = 76/244 (31%), Positives = 129/244 (52%), Gaps = 24/244 (9%)

Query: 363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 422
            +I  +N TF++       +    +   P G  VAVVG  G GKS+++S +    D   G
Sbjct: 2   NSITVRNATFTWARSDPPTL-NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60

Query: 423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKP--EATMAEV-EAAASA 479
           HV +             +  +  V Q+  +   ++ ENIL+G    E     V +A A  
Sbjct: 61  HVAI-------------KGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL 107

Query: 480 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG-S 538
            +    + +LP+G  T++GE+GV LSGGQKQR+++ARA+  N  I L D+  SA+DA   
Sbjct: 108 PD----LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 163

Query: 539 ESIVQEALDR--LMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYA 596
           + I +  +    ++  +T ++V H +S +  VD + V+  G++ E G+++EL+A+ GA+A
Sbjct: 164 KHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFA 223

Query: 597 SLIR 600
             +R
Sbjct: 224 EFLR 227

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score =  166 bits (422), Expect = 6e-46
 Identities = 60/300 (20%), Positives = 121/300 (40%), Gaps = 27/300 (9%)

Query: 338 LMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVA 397
             E   +     +   N R     + ++ F N +          + +D +     G+ +A
Sbjct: 14  WEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP-----VLKDINFKIERGQLLA 68

Query: 398 VVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTI 457
           V G +G+GK++++ +I    +P+ G +                 +I   +Q   +   TI
Sbjct: 69  VAGSTGAGKTSLLMMIMGELEPSEGKIKH-------------SGRISFCSQNSWIMPGTI 115

Query: 458 LENILYGKP--EATMAEV-EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAI 514
            ENI+ G    E     V +A     +    I+      +  +GE G+ LSGGQ+ RI++
Sbjct: 116 KENII-GVSYDEYRYRSVIKACQLEED----ISKFAEKDNIVLGEGGITLSGGQRARISL 170

Query: 515 ARAMLKNPKILLLDEATSALDAG-SESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAV 573
           ARA+ K+  + LLD     LD    + I +  + +LM  +T ++V  ++  ++  D + +
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230

Query: 574 IQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSRSTRLSHSLSTKSLS 633
           + +G     GT  EL      ++S +   +          ++  + +           +S
Sbjct: 231 LHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFSAERRNSILTETLHRFSLEGDAPVS 290

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score =  162 bits (412), Expect = 1e-44
 Identities = 64/271 (23%), Positives = 116/271 (42%), Gaps = 22/271 (8%)

Query: 979  SVGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAG 1038
             + +V +  +     +  +   +     +       + F+  S     V KD N +I  G
Sbjct: 6    VMENVTAFWEE-GFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERG 64

Query: 1039 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALF 1098
            Q  A+ G++G+GK+S++ +I    +P+ GK+   G+             I    Q   + 
Sbjct: 65   QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR-------------ISFCSQNSWIM 111

Query: 1099 AASIFDNIAYGKEGATE--AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 1156
              +I +NI  G          V++A          S         +GE G+ LSGGQ+ R
Sbjct: 112  PGTIKENI-IGVSYDEYRYRSVIKAC--QLEEDI-SKFAEKDNIVLGEGGITLSGGQRAR 167

Query: 1157 IAIARAVLKNPAILLLDEATSALDAE-SECVLQEALERLMRGRTTVLVAHRLSTIRGVDC 1215
            I++ARAV K+  + LLD     LD    + + +  + +LM  +T +LV  ++  ++  D 
Sbjct: 168  ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADK 227

Query: 1216 IGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 1246
            I ++ +G     G+ SEL +     +S  L 
Sbjct: 228  ILILHEGSSYFYGTFSELQNL-RPDFSSKLM 257

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score =  159 bits (403), Expect = 1e-43
 Identities = 48/236 (20%), Positives = 94/236 (39%), Gaps = 28/236 (11%)

Query: 1010 IELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            I+L++V      +  +    ++ NL +  G+   ++G +GSGK++++  I     P +G 
Sbjct: 2    IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59

Query: 1069 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFA--ASIFDNIAYGKE--GATEAEVVEAARA 1124
            + I+G ++R++     R  I      P  +    ++ D +   +E  G      +E  +A
Sbjct: 60   IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114

Query: 1125 AN-VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
                   +                +LS GQ   +  + A+   P I+ LDE    +DA  
Sbjct: 115  LKLGEEILRRKLY-----------KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163

Query: 1184 ECVLQEALERLMRGRTTVLVAHRLST-IRGVDCIGVVQDGRIVEQ-GSHSELVSRP 1237
              V+   ++    G+  +LV H L       +       G  ++   S SEL+   
Sbjct: 164  RHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score =  145 bits (369), Expect = 4e-39
 Identities = 42/238 (17%), Positives = 90/238 (37%), Gaps = 34/238 (14%)

Query: 365 IEFKNVTFSYPSRP-DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           I+ KNV  +   +  +     + ++    G+ V ++G +GSGK+T++  I     P +G+
Sbjct: 2   IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59

Query: 424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFA--TTILENILYG-----KPEATMAEVEAA 476
           + ++ ++++ +     R+ I      P  +    T+ + +                    
Sbjct: 60  IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRD---LFLEM 111

Query: 477 ASAANAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALD 535
             A         L          R + +LS GQ   +  + A+   P+I+ LDE    +D
Sbjct: 112 LKALK-------LGEEI----LRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVD 160

Query: 536 AGSESIVQEALDRLMVGRTTVVVAHRLST-IRNVDTVAVIQQGQVVE-TGTHEELIAK 591
           A    ++   +     G+  ++V H L       +  A    G  ++   +  EL+  
Sbjct: 161 AARRHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score =  161 bits (410), Expect = 2e-43
 Identities = 77/247 (31%), Positives = 132/247 (53%), Gaps = 19/247 (7%)

Query: 1010 IELRHVDFAYPSR-PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            I+L ++   +      +    + +L + AGQ   ++GASG+GKS++I  +     PT G 
Sbjct: 25   IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84

Query: 1069 VMIDGKDIRRLN---LKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARA 1124
            V++DG+++  L+   L   R +IG++ Q   L ++ ++F N+A   E     +     R 
Sbjct: 85   VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144

Query: 1125 ANVHGFV--SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 1182
              +   V      ++Y  P       LSGGQKQR+AIARA+  NP +LL D+ATSALD  
Sbjct: 145  TELLSLVGLGDKHDSY--PS-----NLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197

Query: 1183 S-ECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 1238
            +   +L E L+ + R  G T +L+ H +  ++ + DC+ V+ +G ++EQ + SE+ S P 
Sbjct: 198  TTRSIL-ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK 256

Query: 1239 GAYSRLL 1245
               ++  
Sbjct: 257  TPLAQKF 263

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score =  147 bits (373), Expect = 1e-38
 Identities = 76/237 (32%), Positives = 123/237 (51%), Gaps = 17/237 (7%)

Query: 365 IEFKNVTFSYPSR-PDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           I+  N+T  +      +    + S+  PAG+   V+G SG+GKST++  +     P  G 
Sbjct: 25  IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84

Query: 424 VLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASA 479
           VL+D  ++ TL   +L   R QIG++ Q   L ++ T+  N+    P   +         
Sbjct: 85  VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL--P-LELDNTPKDEVK 141

Query: 480 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALD-AGS 538
                 ++L+  G   +       LSGGQKQR+AIARA+  NPK+LL D+ATSALD A +
Sbjct: 142 RRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATT 199

Query: 539 ESI---VQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 591
            SI   +++   RL  G T +++ H +  ++ + D VAVI  G+++E  T  E+ + 
Sbjct: 200 RSILELLKDINRRL--GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score =  155 bits (395), Expect = 2e-42
 Identities = 62/238 (26%), Positives = 118/238 (49%), Gaps = 18/238 (7%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +++  +++ Y         K  N+ I+ G+  A++G +G GKS++         P++G++
Sbjct: 8    LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65

Query: 1070 MIDGKDI--RRLNLKSLRLKIGLVQQEPA--LFAASIFDNIAYGKE--GATEAEVVEAAR 1123
            + D K I   R  +  LR  IG+V Q+P   LF+AS++ ++++G       E E+ +  R
Sbjct: 66   LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRK--R 123

Query: 1124 AANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAES 1183
              N            K         LS GQK+R+AIA  ++  P +L+LDE T+ LD   
Sbjct: 124  VDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG 178

Query: 1184 ECVLQEALERLMR--GRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
               + + L  + +  G T ++  H +  +    D + V+++GR++ QG+  E+ +  +
Sbjct: 179  VSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKE 236

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score =  146 bits (372), Expect = 2e-39
 Identities = 62/248 (25%), Positives = 118/248 (47%), Gaps = 32/248 (12%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           ++ + + ++Y      +  +  ++    G+  A++GG+G GKST+         P++G +
Sbjct: 8   LKVEELNYNYSDGTHAL--KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65

Query: 425 LLDNVDIKTLQ--LRWLRDQIGLVNQEPA--LFATTILENILYG-----KPEATMAE-VE 474
           L DN  I   +  +  LR+ IG+V Q+P   LF+ ++ +++ +G      PE  + + V+
Sbjct: 66  LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125

Query: 475 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
            A              +            LS GQK+R+AIA  ++  PK+L+LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174

Query: 535 DAGSESIVQEALDRLM--VGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGT------H 585
           D    S + + L  +   +G T ++  H +  +    D V V+++G+V+  G        
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234

Query: 586 EELIAKAG 593
           +E+I K  
Sbjct: 235 KEVIRKVN 242

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score =  153 bits (390), Expect = 7e-42
 Identities = 66/257 (25%), Positives = 119/257 (46%), Gaps = 29/257 (11%)

Query: 1010 IELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            IE+ +V   +      +    ++ +L I  G+   + G +GSGKS+++ ++    +PT+G
Sbjct: 3    IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62

Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPA--LFAASIFDNIAYGKE--GATEAEVVEAAR 1123
             V+ DG+         +R  IG+  Q P    FA  +FD +A+  +       + V   +
Sbjct: 63   DVLYDGERK---KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVK 118

Query: 1124 AA------NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATS 1177
             A      +   F   +P             LSGG+K+R+AIA  ++  P IL+LDE   
Sbjct: 119  KAMEFVGLDFDSFKDRVPF-----------FLSGGEKRRVAIASVIVHEPDILILDEPLV 167

Query: 1178 ALDAESECVLQEALERL-MRGRTTVLVAHRLSTI-RGVDCIGVVQDGRIVEQGSHSELVS 1235
             LD E +  L   +E+    G+T +L++H + T+   VD + V++ G+ V  G+  E + 
Sbjct: 168  GLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227

Query: 1236 RPDGAYSRLLQLQHHHI 1252
            + D  +     L    +
Sbjct: 228  KYDPRFFTSKMLVMRRL 244

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score =  140 bits (356), Expect = 3e-37
 Identities = 62/235 (26%), Positives = 115/235 (48%), Gaps = 15/235 (6%)

Query: 365 IEFKNVTFSYPSRP--DVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 422
           IE  NV+  +      +     + S+    G+ + V G +GSGKST++ ++    +P +G
Sbjct: 3   IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62

Query: 423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPA--LFATTILENILYGKPEATMAEVEAAASAA 480
            VL D    K      +R  IG+  Q P    FA  + + + +   +    + +      
Sbjct: 63  DVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFA-VKNFYPDRDPVPLVK 118

Query: 481 NAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
            A  F+ L  + +     +R    LSGG+K+R+AIA  ++  P IL+LDE    LD   +
Sbjct: 119 KAMEFVGLDFDSFK----DRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 174

Query: 540 SIVQEALDRL-MVGRTTVVVAHRLSTI-RNVDTVAVIQQGQVVETGTHEELIAKA 592
           + +   +++   +G+T ++++H + T+  +VD V V+++G+ V  GT  E + K 
Sbjct: 175 TDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score =  153 bits (388), Expect = 2e-41
 Identities = 61/289 (21%), Positives = 123/289 (42%), Gaps = 37/289 (12%)

Query: 981  GSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQS 1040
            GS       S+ + P       +      I+L  +      +    + K  + +I  G  
Sbjct: 1    GSSHHHHHHSSGLVPRGSH--ML------IQLDQIGRMKQGKT---ILKKISWQIAKGDK 49

Query: 1041 QALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL--NLKSLRLKIGLVQQEPAL- 1097
              L G +G+GK++++ ++  +   T+G V + GK   ++  + +++R  IG V       
Sbjct: 50   WILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEK 109

Query: 1098 --FAASIFDNI---AYGKEG----ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQ 1148
                  + D +   A+   G      +    EA +   + G +SA        +G     
Sbjct: 110  FQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVG-MSAKAQ---QYIG----Y 161

Query: 1149 LSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR---GRTTVLVAH 1205
            LS G+KQR+ IARA++  P +L+LDE  + LD  +   L   L+ L         + V H
Sbjct: 162  LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTH 221

Query: 1206 RLSTIR-GVDCIGVVQDGRIVEQGSHSELVSRPD--GAYSRLLQLQHHH 1251
             +  I      I +++DG+ ++QG+  ++++  +    + + + +Q  +
Sbjct: 222  FIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRFFQKNVAVQRWN 270

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score =  136 bits (345), Expect = 9e-36
 Identities = 49/246 (19%), Positives = 98/246 (39%), Gaps = 31/246 (12%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           I+   +      +    I +  S     G    + G +G+GK+T+++++  +    +G V
Sbjct: 22  IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78

Query: 425 LLDNVDI--KTLQLRWLRDQIGLVNQEPAL---FATTILENIL---------YGKPEATM 470
            L              +R  IG V+            +++ ++         Y   +  +
Sbjct: 79  NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138

Query: 471 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEA 530
                      AH  + L+  G S +  +    LS G+KQR+ IARA++  P++L+LDE 
Sbjct: 139 RNE--------AHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEP 188

Query: 531 TSALDAGSESIVQEALDRLM---VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHE 586
            + LD  +   +   LD L         + V H +  I      + +++ GQ ++ G  E
Sbjct: 189 AAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248

Query: 587 ELIAKA 592
           +++   
Sbjct: 249 DILTSE 254

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score =  140 bits (354), Expect = 3e-36
 Identities = 70/243 (28%), Positives = 120/243 (49%), Gaps = 35/243 (14%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE   V+  YP        +  + +IR G+   L+G SGSGK++++ LI     PT G V
Sbjct: 15   IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG------KEGATEAEVVEAA 1122
             I GK +   +L   +  +GLV Q  ALF   +++DN+++G       +   +A V E  
Sbjct: 73   WIGGKRV--TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130

Query: 1123 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 1182
            R   +  + +  P+           +LSGGQ+QR+A+ARA+   P +LL DE  +A+D +
Sbjct: 131  RFMRLESYANRFPH-----------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179

Query: 1183 SECVLQEALERLMR--GRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGSHSELV 1234
                L+  + ++    G T+V V H       ++     D + V+ +G + + G+  E+ 
Sbjct: 180  IRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVA-----DRVLVLHEGNVEQFGTPEEVY 234

Query: 1235 SRP 1237
             +P
Sbjct: 235  EKP 237

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score =  127 bits (321), Expect = 8e-32
 Identities = 71/234 (30%), Positives = 111/234 (47%), Gaps = 25/234 (10%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IEF  V   YP        R  S     G+ V ++G SGSGK+T++ LI     P  G V
Sbjct: 15  IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAANAH 483
            +    +  L  +  +  +GLV Q  ALF   T+ +N+ +G  E  + + E  A      
Sbjct: 73  WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130

Query: 484 SFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
            F+ L           R   +LSGGQ+QR+A+ARA+   P++LL DE  +A+D      +
Sbjct: 131 RFMRL------ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184

Query: 543 QEALDRL--MVGRTTVVVAH------RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
           +  + ++   +G T+V V H       ++     D V V+ +G V + GT EE+
Sbjct: 185 RTFVRQVHDEMGVTSVFVTHDQEEALEVA-----DRVLVLHEGNVEQFGTPEEV 233

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score =  137 bits (347), Expect = 3e-35
 Identities = 68/247 (27%), Positives = 119/247 (48%), Gaps = 40/247 (16%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            + + H+  ++    +  V  D +L +  G+   ++GASG GK++++  +  F  P +G++
Sbjct: 5    LHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61

Query: 1070 MIDGKDI--RRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG--KEGATEAEVVEAARA 1124
             + GK I  +  NL     ++G + QE  LF   +++ NIAYG        A+     R 
Sbjct: 62   SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQE--RQRI 119

Query: 1125 AN----VH--GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
                            P+           +LSGGQ+QR A+ARA+  +P ++LLDE  SA
Sbjct: 120  EAMLELTGISELAGRYPH-----------ELSGGQQQRAALARALAPDPELILLDEPFSA 168

Query: 1179 LDAESECVLQEALERLMR--GRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGSH 1230
            LD +    ++E +   +R  G++ V V+H      + +     D I V++ GRI++  S 
Sbjct: 169  LDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYA-----DRIAVMKQGRILQTASP 223

Query: 1231 SELVSRP 1237
             EL  +P
Sbjct: 224  HELYRQP 230

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score =  121 bits (306), Expect = 9e-30
 Identities = 61/237 (25%), Positives = 114/237 (48%), Gaps = 28/237 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +   +++ S+ + P +    D S+    G+ + ++G SG GK+T++  +  F  P++G +
Sbjct: 5   LHIGHLSKSFQNTPVL---NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61

Query: 425 LLDNVDIKTLQLR---WLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAA 480
            L    I +         R  +G + QE  LF   T+  NI YG         +      
Sbjct: 62  SLSGKTIFSKNTNLPVRERR-LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE 120

Query: 481 NAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
                  +      +++  R   +LSGGQ+QR A+ARA+  +P+++LLDE  SALD    
Sbjct: 121 AMLELTGI------SELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLR 174

Query: 540 SIVQEALDRLM--VGRTTVVVAH------RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
             ++E +   +   G++ V V+H      + +     D +AV++QG++++T +  EL
Sbjct: 175 RQIREDMIAALRANGKSAVFVSHDREEALQYA-----DRIAVMKQGRILQTASPHEL 226

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score =  132 bits (335), Expect = 7e-35
 Identities = 72/209 (34%), Positives = 103/209 (49%), Gaps = 31/209 (14%)

Query: 1042 ALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-A 1100
             L+G +G+GKS  + LI     P  G+V ++G DI    L   R  IG V Q+ ALF   
Sbjct: 28   VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFPHL 85

Query: 1101 SIFDNIAYGKEGATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR 1156
            S++ NIAYG       E    V E A    +   +   P            +LSGG++QR
Sbjct: 86   SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-----------RLSGGERQR 134

Query: 1157 IAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAH------RLS 1208
            +A+ARA++  P +LLLDE  SA+D +++ VL E L  + R      + V H       L+
Sbjct: 135  VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLA 194

Query: 1209 TIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
                 D + V+ +GRIVE+G   EL S  
Sbjct: 195  -----DEVAVMLNGRIVEKGKLKELFSAK 218

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score =  118 bits (298), Expect = 6e-30
 Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 29/205 (14%)

Query: 396 VAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA- 454
             ++G +G+GKS  + LI     P+ G V L+  DI  L     R  IG V Q+ ALF  
Sbjct: 27  CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP-PERRG-IGFVPQDYALFPH 84

Query: 455 TTILENILYG--KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV-QLSGGQKQR 511
            ++  NI YG       +  VE           + +        + +R   +LSGG++QR
Sbjct: 85  LSVYRNIAYGLRN----VERVERDRRVREMAEKLGI------AHLLDRKPARLSGGERQR 134

Query: 512 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL--MVGRTTVVVAH------RLS 563
           +A+ARA++  P++LLLDE  SA+D  ++ ++ E L  +        + V H       L+
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLA 194

Query: 564 TIRNVDTVAVIQQGQVVETGTHEEL 588
                D VAV+  G++VE G  +EL
Sbjct: 195 -----DEVAVMLNGRIVEKGKLKEL 214

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score =  135 bits (342), Expect = 1e-34
 Identities = 65/240 (27%), Positives = 121/240 (50%), Gaps = 34/240 (14%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE+  +   +          + +L++ +G+   ++G +G+GK+  + LI  F+ P +G++
Sbjct: 2    IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG--KEGATEAE-VVEAARAA 1125
            ++DGKD+   +L   +  I  V Q  +LF   ++  N+ +G   +   + + V++ AR  
Sbjct: 58   LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115

Query: 1126 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 1185
             +   +   P             LSGG++QR+A+ARA++ NP ILLLDE  SALD  ++ 
Sbjct: 116  KIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164

Query: 1186 VLQEALERLMR--GRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGSHSELVSRP 1237
              +E L  L +    T + + H       ++     D I VV DG++++ G   E+  +P
Sbjct: 165  NAREMLSVLHKKNKLTVLHITHDQTEARIMA-----DRIAVVMDGKLIQVGKPEEIFEKP 219

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score =  117 bits (296), Expect = 1e-28
 Identities = 62/236 (26%), Positives = 116/236 (49%), Gaps = 34/236 (14%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE ++++  +          + S+   +G+   ++G +G+GK+  + LI  F+ P++G +
Sbjct: 2   IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57

Query: 425 LLDNVDIKTL--QLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATMAEVEAAASAAN 481
           LLD  D+  L  +       I  V Q  +LF    + +N+ +G     M +++      +
Sbjct: 58  LLDGKDVTDLSPEKH----DIAFVYQNYSLFPHMNVKKNLEFG---MRMKKIKDPKRVLD 110

Query: 482 AHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
               + +        + +R    LSGG++QR+A+ARA++ NPKILLLDE  SALD  ++ 
Sbjct: 111 TARDLKI------EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164

Query: 541 IVQEALDRL--MVGRTTVVVAH------RLSTIRNVDTVAVIQQGQVVETGTHEEL 588
             +E L  L      T + + H       ++     D +AV+  G++++ G  EE+
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMA-----DRIAVVMDGKLIQVGKPEEI 215

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score =  132 bits (335), Expect = 1e-34
 Identities = 79/273 (28%), Positives = 126/273 (46%), Gaps = 38/273 (13%)

Query: 980  VGSVFSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQ 1039
            +GS       S+ + P       +      I++  +  ++     + V K  N+ IR G+
Sbjct: 1    MGSSHHHHHHSSGLVPRGSHMLQM------IDVHQLKKSFG---SLEVLKGINVHIREGE 51

Query: 1040 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI--RRLNLKSLRLKIGLVQQEPAL 1097
               ++G SGSGKS+ +  +    D   G+++IDG ++  +  NL  +R ++G+V Q   L
Sbjct: 52   VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNL 111

Query: 1098 FA-ASIFDNIAYGK---EGATEAEVVEAARA--ANVHGFVSALPN-AYKTPVGERGVQLS 1150
            F   ++ +NI             +    A      V      L + A+  P       LS
Sbjct: 112  FPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVG-----LKDKAHAYPD-----SLS 161

Query: 1151 GGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-----GRTTVLVAH 1205
            GGQ QR+AIARA+   P I+L DE TSALD E   ++ E L  +M+     G T V+V H
Sbjct: 162  GGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLS-VMKQLANEGMTMVVVTH 217

Query: 1206 RLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
             +   R V D +  +  G I+E+G   +L  RP
Sbjct: 218  EMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score =  131 bits (333), Expect = 3e-34
 Identities = 79/267 (29%), Positives = 121/267 (45%), Gaps = 45/267 (16%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           I+   +  S+     + + +  ++    G+ V V+G SGSGKST +  +    D + G +
Sbjct: 25  IDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81

Query: 425 LLDNVDI--KTLQLRWLRDQIGLVNQEPALFA-TTILENILYGKPEAT-MAEVEAAASAA 480
           ++D +++  K   L  +R+++G+V Q   LF   T+L NI     +       +A A A 
Sbjct: 82  IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA- 140

Query: 481 NAHSFITLLPN-GYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
                + LL   G   +       LSGGQ QR+AIARA+   PKI+L DE TSALD    
Sbjct: 141 -----MELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP--- 192

Query: 540 SIVQEALDRLMV-----GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAG 593
            +V E L  +M      G T VVV H +   R V D V  +  G ++E G  E+L     
Sbjct: 193 EMVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL----- 246

Query: 594 AYASLIRFQEMVRNRDFANPSTRRSRS 620
                           F  P   R+++
Sbjct: 247 ----------------FDRPQHERTKA 257

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score =  129 bits (326), Expect = 2e-33
 Identities = 77/260 (29%), Positives = 121/260 (46%), Gaps = 58/260 (22%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +   ++   Y       + +  S+   AG  ++++G SGSGKST +  I     P+ G +
Sbjct: 7   LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63

Query: 425 LLDNVDIKTL-------------QLRWLRDQIGLVNQEPALFA-TTILENILYGKPEATM 470
           +++  +I  +             QLR LR ++ +V Q   L++  T+LEN++    EA +
Sbjct: 64  IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM----EAPI 119

Query: 471 -------AEVEAAASAANAHSFITLLPNGYSTQVG--ERG-----VQLSGGQKQRIAIAR 516
                   +    A           L      +VG  ER      V LSGGQ+QR++IAR
Sbjct: 120 QVLGLSKHDARERALK--------YL-----AKVGIDERAQGKYPVHLSGGQQQRVSIAR 166

Query: 517 AMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-----GRTTVVVAHRLSTIRNV-DT 570
           A+   P +LL DE TSALD   E +V E L  +M      G+T VVV H +   R+V   
Sbjct: 167 ALAMEPDVLLFDEPTSALD--PE-LVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSH 222

Query: 571 VAVIQQGQVVETGTHEELIA 590
           V  + QG++ E G  E++  
Sbjct: 223 VIFLHQGKIEEEGDPEQVFG 242

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score =  125 bits (317), Expect = 4e-32
 Identities = 72/239 (30%), Positives = 119/239 (49%), Gaps = 37/239 (15%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL---- 1079
               V K  +L+ RAG   +++G+SGSGKS+ +  I     P+ G ++++G++I  +    
Sbjct: 18   GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77

Query: 1080 ---------NLKSLRLKIGLVQQEPALFA-ASIFDNIAYGK---EGATEAEVVEAARA-- 1124
                      L+ LR ++ +V Q   L++  ++ +N+        G ++ +  E A    
Sbjct: 78   GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYL 137

Query: 1125 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 1184
            A V G        Y  PV      LSGGQ+QR++IARA+   P +LL DE TSALD E  
Sbjct: 138  AKV-GIDERAQGKY--PV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE-- 187

Query: 1185 CVLQEALERLMR-----GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRP 1237
             ++ E L R+M+     G+T V+V H +   R V   +  +  G+I E+G   ++   P
Sbjct: 188  -LVGEVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNP 244

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score =  119 bits (300), Expect = 2e-30
 Identities = 57/237 (24%), Positives = 105/237 (44%), Gaps = 40/237 (16%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPTA 1066
            +   ++           + K  +L ++ G+  +++GASGSGKS+   ++ L++    PT 
Sbjct: 5    LRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTE 58

Query: 1067 GKVMIDGKDIRRLNLKSL----RLKIGLV-QQEPALFAASIFDNIA----YGKEGATEAE 1117
            GKV ++GK++   N K L      K+G V Q    +   +  +N+        +   EA+
Sbjct: 59   GKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK 118

Query: 1118 VVEAARAANVHGFV------SALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILL 1171
                 R   +   +      S  P            +LSGG++QR+AIARA+   P +L 
Sbjct: 119  ----ERGEYLLSELGLGDKLSRKPY-----------ELSGGEQQRVAIARALANEPILLF 163

Query: 1172 LDEATSALDAESECVLQEALERL-MRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQ 1227
             DE T  LD+ +   + +   ++   G + V+V H             ++DG++V +
Sbjct: 164  ADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score =  111 bits (281), Expect = 7e-28
 Identities = 60/233 (25%), Positives = 99/233 (42%), Gaps = 34/233 (14%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +  +N+           I +  S+    G+ V+++G SGSGKST++ ++     P  G V
Sbjct: 5   LRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61

Query: 425 LLDNVDIKTL---QLRWLRDQ-IGLVNQEPALFA-TTILENI----LYGKPEATMAEVEA 475
            L+  ++      +L  LR++ +G V Q   L    T LEN+    L         + EA
Sbjct: 62  FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG----KPKKEA 117

Query: 476 AASAANAHSFITL------LPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDE 529
                   S + L       P            +LSGG++QR+AIARA+   P +L  DE
Sbjct: 118 KERGEYLLSELGLGDKLSRKPY-----------ELSGGEQQRVAIARALANEPILLFADE 166

Query: 530 ATSALDAGSESIVQEALDRL-MVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVE 581
            T  LD+ +   V +   ++   G + V+V H             ++ G+VV 
Sbjct: 167 PTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score =  122 bits (309), Expect = 3e-30
 Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 35/247 (14%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
             I +++V   +     VV   + N+ I  G+   ++G SG+GK++ + +I     P+ G+
Sbjct: 3    RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61

Query: 1069 VMIDGKDIRRLNLKSLRLK---IGLVQQEPALFA-ASIFDNIAYG----KEGATEAE--V 1118
            +  D + +       +  +   IG+V Q  AL+   + F+NIA+     K    E    V
Sbjct: 62   LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121

Query: 1119 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
             E A+  ++H  ++  P            +LSG Q+QR+A+ARA++K+P++LLLDE  S 
Sbjct: 122  EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170

Query: 1179 LDAESECVLQEALERLMR--GRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGSH 1230
            LDA      +  ++ +    G T ++V+H       ++     D +GV+  G++V+ G  
Sbjct: 171  LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIA-----DRVGVLVKGKLVQVGKP 225

Query: 1231 SELVSRP 1237
             +L   P
Sbjct: 226  EDLYDNP 232

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score =  101 bits (254), Expect = 3e-23
 Identities = 67/244 (27%), Positives = 115/244 (47%), Gaps = 37/244 (15%)

Query: 364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
            I  KNV+  +     V+   + +I    G+   ++G SG+GK+T + +I     P+ G 
Sbjct: 3   RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61

Query: 424 VLLDNVDIKTLQLRWL----RDQIGLVNQEPALFAT-TILENILYG-----KPEATMAE- 472
           +  D+  + +     +    R  IG+V Q  AL+   T  ENI +        +  + + 
Sbjct: 62  LYFDDRLVASNGKLIVPPEDRK-IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR 120

Query: 473 VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATS 532
           VE  A   + H  +   P            +LSG Q+QR+A+ARA++K+P +LLLDE  S
Sbjct: 121 VEEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFS 169

Query: 533 ALDAGSESIVQEALDRL--MVGRTTVVVAH------RLSTIRNVDTVAVIQQGQVVETGT 584
            LDA      +  +  +   +G T +VV+H       ++     D V V+ +G++V+ G 
Sbjct: 170 NLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIA-----DRVGVLVKGKLVQVGK 224

Query: 585 HEEL 588
            E+L
Sbjct: 225 PEDL 228

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score =  119 bits (301), Expect = 3e-30
 Identities = 51/232 (21%), Positives = 98/232 (42%), Gaps = 32/232 (13%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            ++L+ V        +       +  +RAG+   LVG +G+GKS+++A +        G +
Sbjct: 5    MQLQDVA-------ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 56

Query: 1070 MIDGKDIRRLNLKSLRLKIGLV-QQEPALFAASIFDNIAYGKEGATEAEVVEAA-RAANV 1127
               G+ +   +   L L    + QQ+   FA  ++  +   +   T  E++     A  +
Sbjct: 57   QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL 116

Query: 1128 HGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVL-------KNPAILLLDEATSAL 1179
               +             R   QLSGG+ QR+ +A  VL           +LLLDE  ++L
Sbjct: 117  DDKL------------GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSL 164

Query: 1180 D-AESECVLQEALERLMRGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGS 1229
            D A+   + +       +G   V+ +H L+ T+R      +++ G+++  G 
Sbjct: 165  DVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score =  117 bits (295), Expect = 2e-29
 Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 33/224 (14%)

Query: 382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD 441
                S    AG+ + +VG +G+GKST+++ +        G +      ++      L  
Sbjct: 15  RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 73

Query: 442 QIGLVNQEPAL-FATTILENILYG-KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGE 499
               ++Q+    FAT +   +      +     +   A A                    
Sbjct: 74  HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK------------LG 121

Query: 500 RGV-QLSGGQKQRIAIARAML-------KNPKILLLDEATSALDAGSESIVQEALDRLMV 551
           R   QLSGG+ QR+ +A  +L          ++LLLDE  ++LD       Q ALD+++ 
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQ----QSALDKILS 177

Query: 552 -----GRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELI 589
                G   V+ +H L+ T+R+     +++ G+++ +G  EE++
Sbjct: 178 ALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  127 bits (320), Expect = 3e-30
 Identities = 57/298 (19%), Positives = 103/298 (34%), Gaps = 39/298 (13%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLI--------ERF 416
               +VT  Y +     + R  +     G+ + +VG +G GKST + ++         RF
Sbjct: 78  NLEAHVTHRYSAN-SFKLHRLPTP--RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134

Query: 417 YDPNAGHVLLDNVDIKTLQ---LRWLRDQIGLVNQEP--ALFATTILENILYG------K 465
            DP     ++       LQ    + L D I  + +          I   +         +
Sbjct: 135 DDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR 194

Query: 466 PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKI 524
            E +  +V+                      V +R + +LSGG+ QR AI  + ++   +
Sbjct: 195 MEKSPEDVKRYIKILQL------------ENVLKRDIEKLSGGELQRFAIGMSCVQEADV 242

Query: 525 LLLDEATSALDAGSESIVQEALDRLMVGRTTVVVA-HRLSTIRNV-DTVAVIQQGQVVET 582
            + DE +S LD        + +  L+     V+   H LS +  + D V +I     V  
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYG 302

Query: 583 GTHEELIAKAGAYASLIRF--QEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGS 638
                   + G    L      E +R R  A        +  L +  ++++ S  S  
Sbjct: 303 VVTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLK 360

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  124 bits (313), Expect = 2e-29
 Identities = 52/268 (19%), Positives = 90/268 (33%), Gaps = 43/268 (16%)

Query: 364 NIEFKNVTFSYPS---RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPN 420
             +  +  FSYPS        +       F   + + ++G +G+GK+T++ L+     P+
Sbjct: 346 QNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD 405

Query: 421 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEP--ALFATTILENILYGKPEATMAEVEAAAS 478
            G  +        L +     +I          LF   I    L  +             
Sbjct: 406 EGQDIPK------LNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQ------FQTDVVK 453

Query: 479 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 538
                  I                 LSGG+ QR+AI  A+     I L+DE ++ LD+  
Sbjct: 454 PLRIDDIIDQEVQ-----------HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ 502

Query: 539 ESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVE--TGTHEELIAKAG 593
             I  + + R +    +T  +V H       + D V V +            E L+    
Sbjct: 503 RIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGCN 562

Query: 594 AYAS--LIRFQEMVRNRDFANPSTRRSR 619
            +     + F+     RD   P++ R R
Sbjct: 563 RFLKNLNVTFR-----RD---PNSFRPR 582

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  123 bits (312), Expect = 3e-29
 Identities = 40/239 (16%), Positives = 78/239 (32%), Gaps = 30/239 (12%)

Query: 998  PDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIAL 1057
               E ++         +            V           +   ++G +G+GK+++I L
Sbjct: 340  DATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKL 397

Query: 1058 IERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKEGATE 1115
            +     P  G+       I +LN+     KI          LF   I        +    
Sbjct: 398  LAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRG------QFLNP 445

Query: 1116 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 1175
                +  +   +   +                 LSGG+ QR+AI  A+     I L+DE 
Sbjct: 446  QFQTDVVKPLRIDDIIDQEVQ-----------HLSGGELQRVAIVLALGIPADIYLIDEP 494

Query: 1176 TSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHS 1231
            ++ LD+E   +  + + R +    +T  +V H       + D + V +        + +
Sbjct: 495  SAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARA 553

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  112 bits (283), Expect = 1e-25
 Identities = 44/233 (18%), Positives = 79/233 (33%), Gaps = 23/233 (9%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
                 HV   Y +    +         R GQ   LVG +G GKS+ + ++     P  G+
Sbjct: 77   TNLEAHVTHRYSANSFKL---HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133

Query: 1069 V-----------MIDGKDIRRLNLKSLRLKIGLVQQEP--ALFAASIFDNIAYGKEGATE 1115
                           G +++    K L   I  + +         +I   +    E    
Sbjct: 134  FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL 193

Query: 1116 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 1175
                           +  L N  K  +     +LSGG+ QR AI  + ++   + + DE 
Sbjct: 194  RMEKSPEDVKRYIKILQ-LENVLKRDIE----KLSGGELQRFAIGMSCVQEADVYMFDEP 248

Query: 1176 TSALDAESECVLQEALERLMRGRTTVLVA-HRLSTIRGV-DCIGVVQDGRIVE 1226
            +S LD +      + +  L+     V+   H LS +  + D + ++     V 
Sbjct: 249  SSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score =  118 bits (299), Expect = 4e-30
 Identities = 70/238 (29%), Positives = 116/238 (48%), Gaps = 35/238 (14%)

Query: 1010 IELRHVDFAYPS-RPDVVVFKDFNLRIRAGQSQALVGASGSGKSS---VIALIERFYDPT 1065
            ++L++V   Y      +   K+ NL I+ G+  +++G SGSGKS+   +I  +++   PT
Sbjct: 2    VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58

Query: 1066 AGKVMIDGKDIRRLNLKSL----RLKIGLVQQEPALFA-ASIFDNIA-----YGKEGATE 1115
             G+V ID      L+   L    R KIG V Q+  L    +  +N+        +   + 
Sbjct: 59   EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118

Query: 1116 AEVVEAARAA--NV---HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAIL 1170
             E  + A            F +  PN           QLSGGQ+QR+AIARA+  NP I+
Sbjct: 119  EERRKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPII 167

Query: 1171 LLDEATSALDAESECVLQEALERL--MRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVE 1226
            L D+ T ALD+++   + + L++L    G+T V+V H ++  R  + I  ++DG +  
Sbjct: 168  LADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score =  117 bits (296), Expect = 1e-29
 Identities = 75/235 (31%), Positives = 117/235 (49%), Gaps = 29/235 (12%)

Query: 365 IEFKNVTFSYPS-RPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           ++ KNVT +Y      +   ++ ++    G+ V+++G SGSGKST++++I     P  G 
Sbjct: 2   VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61

Query: 424 VLLDNVDIKTL---QLRWLR-DQIGLVNQEPALFA-TTILENI---LYGKPEATMAEVEA 475
           V +DN+    L   +L  +R D+IG V Q+  L    T LEN+   L  K    M+  E 
Sbjct: 62  VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121

Query: 476 AASAANA-------HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD 528
              A            F    PN           QLSGGQ+QR+AIARA+  NP I+L D
Sbjct: 122 RKRALECLKMAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILAD 170

Query: 529 EATSALDAGSESIVQEALDRL--MVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVE 581
           + T ALD+ +   + + L +L    G+T VVV H ++  R  + +  ++ G+V  
Sbjct: 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  124 bits (313), Expect = 1e-29
 Identities = 44/240 (18%), Positives = 89/240 (37%), Gaps = 27/240 (11%)

Query: 348 IIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKS 407
           ++++ ++     ++   +++  +                +     G+ + ++G +G GK+
Sbjct: 253 MLKEVSDLDLSKDLKTKMKWTKIIKKLGDF----QLVVDNGEAKEGEIIGILGPNGIGKT 308

Query: 408 TVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPE 467
           T   ++      + G V  +   +     R   +  G V Q         LEN       
Sbjct: 309 TFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ--------YLENASKDALS 360

Query: 468 ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLL 527
            +    E      N H  +    N            LSGG+ Q++ IA  + K   + +L
Sbjct: 361 TSSWFFEEVTKRLNLHRLLESNVN-----------DLSGGELQKLYIAATLAKEADLYVL 409

Query: 528 DEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGT 584
           D+ +S LD     IV +A+ R+       T ++ H LS    + D + V  +G+  + G 
Sbjct: 410 DQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF-KGEPEKAGL 468

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  123 bits (311), Expect = 2e-29
 Identities = 53/302 (17%), Positives = 108/302 (35%), Gaps = 41/302 (13%)

Query: 368 KNVTFSYPSRPDVIIFRDFSIFFP-AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL 426
             V   Y     V  F+ F +  P     + V+G +G GK+TV+ ++     PN G    
Sbjct: 3   GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP-- 56

Query: 427 DNVDIKTLQLRWLR-DQIGLVNQEPA---------LFATTILENILYGKPEATMAEVEAA 476
           ++   K   L+  R  +I    +E           +         L G     + +++  
Sbjct: 57  NSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDER 116

Query: 477 ASAANAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALD 535
                    + +        +  +    LSGG  QR+ +A ++L+   + + D+ +S LD
Sbjct: 117 GKKDEVKELLNMT------NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170

Query: 536 AGSESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAGA 594
                 + +A+  L+  +  +VV H L  +  + D + +I     V     +   A+ G 
Sbjct: 171 VRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGI 230

Query: 595 YASLIRF----------------QEMVRNRDFANPSTRRSRSTRLSHSLSTKSLSLRSGS 638
              L  +                 + V + D +     + + T++   L    L + +G 
Sbjct: 231 NNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGE 290

Query: 639 LR 640
            +
Sbjct: 291 AK 292

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  117 bits (294), Expect = 3e-27
 Identities = 47/243 (19%), Positives = 91/243 (37%), Gaps = 24/243 (9%)

Query: 989  RSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASG 1048
            R   I     +   ++  +                D  +  D N   + G+   ++G +G
Sbjct: 246  RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVD-NGEAKEGEIIGILGPNG 304

Query: 1049 SGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAY 1108
             GK++   ++        G V  + + +     +      G VQQ          +N + 
Sbjct: 305  IGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ--------YLENASK 356

Query: 1109 GKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 1168
                 +     E  +  N+H  + +  N            LSGG+ Q++ IA  + K   
Sbjct: 357  DALSTSSWFFEEVTKRLNLHRLLESNVN-----------DLSGGELQKLYIAATLAKEAD 405

Query: 1169 ILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIV 1225
            + +LD+ +S LD E   ++ +A++R+ R     T ++ H LS    + D I +V  G   
Sbjct: 406  LYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRI-IVFKGEPE 464

Query: 1226 EQG 1228
            + G
Sbjct: 465  KAG 467

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  110 bits (277), Expect = 4e-25
 Identities = 47/218 (21%), Positives = 87/218 (39%), Gaps = 13/218 (5%)

Query: 1028 FKDFNLRI-RAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086
            FK F L   +      ++G +G GK++V+ ++     P  G    + K  +   LK  R 
Sbjct: 14   FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD--PNSKVGKDEVLKRFRG 71

Query: 1087 K-IGLVQQEP---ALFAASIFDNIAYGKE--GATEAEVVEAARAANVHGFVSALPNAYKT 1140
            K I    +E     L        + Y  +    T  E++           V  L N   T
Sbjct: 72   KEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLN--MT 129

Query: 1141 PVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRT 1199
             +  +    LSGG  QR+ +A ++L+   + + D+ +S LD      + +A+  L++ + 
Sbjct: 130  NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKY 189

Query: 1200 TVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 1236
             ++V H L  +  + D I ++     V         +R
Sbjct: 190  VIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAAR 227

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score =  116 bits (294), Expect = 3e-29
 Identities = 60/243 (24%), Positives = 98/243 (40%), Gaps = 43/243 (17%)

Query: 362 NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA 421
           N  +  +N+ F Y +     +F+  +     G  +AV+G +G GKST++ L+   + P  
Sbjct: 2   NKALSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59

Query: 422 GHVLLDNVDIKTLQLRWLRDQIGLVNQEP-ALFATTILENILYG---------KP-EATM 470
           G + +                IG V Q   + FA ++L+ +L G         KP     
Sbjct: 60  GKIEVYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY 106

Query: 471 AEVEAAASAANAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDE 529
                A    N                 +R    LSGGQ+Q I IARA+    K++LLDE
Sbjct: 107 QVAMQALDYLNLTHL------------AKREFTSLSGGQRQLILIARAIASECKLILLDE 154

Query: 530 ATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLST-IRNVDTVAVIQQGQVVETGTHE 586
            TSALD  ++ IV   L  L      T V   H+ +  +   +   ++ +    + G   
Sbjct: 155 PTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQ-NFKFGETR 213

Query: 587 ELI 589
            ++
Sbjct: 214 NIL 216

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score =  112 bits (283), Expect = 1e-27
 Identities = 54/230 (23%), Positives = 95/230 (41%), Gaps = 42/230 (18%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            + + ++ F Y +     +F+  N  +  G   A++G +G GKS+++ L+   + P  GK+
Sbjct: 5    LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62

Query: 1070 MIDGKDIRRLNLKSLRLKIGLV-QQEPALFAASIFDNIAYG---------KEGATEAEVV 1119
             +                IG V Q   + FA S+ D +  G         K  + + +V 
Sbjct: 63   EVYQS-------------IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109

Query: 1120 EAA-RAANVHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATS 1177
              A    N+                +R    LSGGQ+Q I IARA+     ++LLDE TS
Sbjct: 110  MQALDYLNLTHL------------AKREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157

Query: 1178 ALDAESECVLQEALERLMR--GRTTVLVAHRLST-IRGVDCIGVVQDGRI 1224
            ALD  ++ ++   L  L +    T V   H+ +  +   +   ++     
Sbjct: 158  ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  123 bits (312), Expect = 3e-29
 Identities = 61/305 (20%), Positives = 103/305 (33%), Gaps = 40/305 (13%)

Query: 368 KNVTFSYPSRPDVIIFRDFSIFFP-AGKTVAVVGGSGSGKSTVVS-----LIERFYD-PN 420
           ++    Y        F  + +     G  V +VG +G+GK+T V      LI    +  +
Sbjct: 95  EDCVHRYGVN----AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDND 150

Query: 421 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPAL-FATTILENILYGKPEATMAEVEAAASA 479
           +   ++       LQ  + R + G +       +   +        P+A   +V      
Sbjct: 151 SWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLL--------PKAVKGKVRELLKK 202

Query: 480 ANAHSFITLLPNGYS-TQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG 537
            +       +        V +R + QLSGG+ QR+AIA A+L+       DE +S LD  
Sbjct: 203 VDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 262

Query: 538 SESIVQEALDRLMVGRTTVVVA-HRLSTIRNV-DTVAVIQ-----QGQVVETGTHEELIA 590
               V   + RL      V+V  H L+ +  + D + V+       G   +       I 
Sbjct: 263 QRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGIN 322

Query: 591 KAGAYASLIRFQEMVRNRDFANPSTRRS------RSTRLSHSLSTKSLSLRSGSLRNLSY 644
               +       E VR R +    T+ S      R T + +    K        L     
Sbjct: 323 ---EFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF--KLEVEPG 377

Query: 645 SYSTG 649
               G
Sbjct: 378 EIRKG 382

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  120 bits (303), Expect = 3e-28
 Identities = 63/285 (22%), Positives = 105/285 (36%), Gaps = 48/285 (16%)

Query: 346 PSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSG 405
             I     + R   E    +E+  +   Y S                G+ + +VG +G G
Sbjct: 339 YEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNGIG 394

Query: 406 KSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGK 465
           K+T V ++    +P  G V  D               +    Q                +
Sbjct: 395 KTTFVKMLAGVEEPTEGKVEWD-------------LTVAYKPQYIKA------------E 429

Query: 466 PEATMAEV--EAAASAANAHSFIT------LLPNGYSTQVGERGVQLSGGQKQRIAIARA 517
            E T+ E+  +  +S  N++ + T       + + Y   V +    LSGG+ QR+AIA  
Sbjct: 430 YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVED----LSGGELQRVAIAAT 485

Query: 518 MLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAVI 574
           +L++  I LLDE ++ LD      V  A+  LM    +T +VV H +  I  V D + V 
Sbjct: 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF 545

Query: 575 QQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSR 619
            +G+    G     +         +    +   RD   P + R R
Sbjct: 546 -EGEPGRHGRALPPMGMREGMNRFLASVGITFRRD---PDSGRPR 586

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  110 bits (277), Expect = 5e-25
 Identities = 51/249 (20%), Positives = 87/249 (34%), Gaps = 23/249 (9%)

Query: 1013 RHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVI-----ALIERFYD-PTA 1066
                  Y               ++ G    +VG +G+GK++ +      LI    +   +
Sbjct: 95   EDCVHRYG---VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151

Query: 1067 GKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAAN 1126
               +I       L     RLK G ++    +      D +    +G    E+++      
Sbjct: 152  WDNVIRAFRGNELQNYFERLKNGEIRP---VVKPQYVDLLPKAVKG-KVRELLKKVDEVG 207

Query: 1127 VHGFVSALPNAYKTPVGERGV-QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 1185
                V          V +R + QLSGG+ QR+AIA A+L+       DE +S LD     
Sbjct: 208  KFEEVVKELEL--ENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRL 265

Query: 1186 VLQEALERLMRGRTTVLVA-HRLSTIRGV-DCIGVVQD-----GRIVEQGSHSELVSRPD 1238
             +   + RL      VLV  H L+ +  + D I VV       G   +       ++   
Sbjct: 266  KVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFL 325

Query: 1239 GAYSRLLQL 1247
              Y +   +
Sbjct: 326  QGYLKDENV 334

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  110 bits (276), Expect = 8e-25
 Identities = 57/263 (21%), Positives = 104/263 (39%), Gaps = 27/263 (10%)

Query: 988  DRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRP-DVVVFKDFNLRIRAGQSQALVGA 1046
            D + R  P +     +           V++    +       +     IR G+   +VG 
Sbjct: 331  DENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGP 390

Query: 1047 SGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI 1106
            +G GK++ + ++    +PT GKV  D     +        + G V +   L +      +
Sbjct: 391  NGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE-GTVYE---LLSKIDSSKL 446

Query: 1107 AYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 1166
                    + E+++             + + Y   V +    LSGG+ QR+AIA  +L++
Sbjct: 447  ---NSNFYKTELLKPLG----------IIDLYDRNVED----LSGGELQRVAIAATLLRD 489

Query: 1167 PAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGR 1223
              I LLDE ++ LD E    +  A+  LM    +T ++V H +  I  V D + +V +G 
Sbjct: 490  ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL-IVFEGE 548

Query: 1224 IVEQGSHSELVSRPDGAYSRLLQ 1246
                G     +   +G  +R L 
Sbjct: 549  PGRHGRALPPMGMREG-MNRFLA 570

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score =  120 bits (303), Expect = 2e-28
 Identities = 64/304 (21%), Positives = 103/304 (33%), Gaps = 38/304 (12%)

Query: 368 KNVTFSYPSRPDVIIFRDFSIFFP-AGKTVAVVGGSGSGKSTVVSLIERFYDPN------ 420
           ++    Y        F  + +     G  V +VG +G+GKST V ++     PN      
Sbjct: 25  EDCVHRYGVNA----FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDND 80

Query: 421 AGHVLLDNVDIKTLQLRWLR---DQIGLVNQEP--ALFATTILENILYG-KPEATMAEVE 474
           +   ++       LQ  + +    +I  V +     L    +   ++   K      ++E
Sbjct: 81  SWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLE 140

Query: 475 AAASAANAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSA 533
               A         L N     V ER +  LSGG+ QR+AIA A+L+N      DE +S 
Sbjct: 141 EVVKALE-------LEN-----VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSY 188

Query: 534 LDAGSESIVQEALDRLMVGRTTVVVA-HRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 591
           LD         A+ RL     +V+V  H L+ +  + D + V+     V     +    +
Sbjct: 189 LDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTR 248

Query: 592 AG--AYASLIRFQEMVRNRD----FANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYS 645
            G   +       E VR R     F     R         +         S  L      
Sbjct: 249 NGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGE 308

Query: 646 YSTG 649
              G
Sbjct: 309 IKKG 312

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score =  118 bits (297), Expect = 1e-27
 Identities = 67/286 (23%), Positives = 109/286 (38%), Gaps = 50/286 (17%)

Query: 346 PSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSG 405
             I    T  R   E    + +  +   Y S                G+ + +VG +G G
Sbjct: 269 YEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNGIG 324

Query: 406 KSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGK 465
           K+T V ++    +P  G +  D               + +  +   + A           
Sbjct: 325 KTTFVKMLAGVEEPTEGKIEWD---------------LTVAYKPQYIKA----------D 359

Query: 466 PEATMAEV--EAAASAANAHSFIT-LLPNGYSTQVG-----ERGVQ-LSGGQKQRIAIAR 516
            E T+ E+  +  AS  N++ + T LL       +G     +R V  LSGG+ QR+AIA 
Sbjct: 360 YEGTVYELLSKIDASKLNSNFYKTELL-----KPLGIIDLYDREVNELSGGELQRVAIAA 414

Query: 517 AMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNV-DTVAV 573
            +L++  I LLDE ++ LD      V  A+  LM    +T +VV H +  I  V D + V
Sbjct: 415 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMV 474

Query: 574 IQQGQVVETGTHEELIAKAGAYASLIRFQEMVRNRDFANPSTRRSR 619
             +G+  + G     +         +    +   RD   P T R R
Sbjct: 475 F-EGEPGKYGRALPPMGMREGMNRFLASIGITFRRD---PDTGRPR 516

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score =  110 bits (276), Expect = 5e-25
 Identities = 56/239 (23%), Positives = 93/239 (38%), Gaps = 29/239 (12%)

Query: 1028 FKDFNL-RIRAGQSQALVGASGSGKSSVI-----ALIERFYD-PTAGKVMIDGKDIRRLN 1080
            F  + L  ++ G    +VG +G+GKS+ +      LI        +   +I       L 
Sbjct: 36   FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQ 95

Query: 1081 LKSLRL---KIGLVQQEP--ALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALP 1135
                +L   +I  V +     L   ++   +    + A E   +E      +      L 
Sbjct: 96   NYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEV-VKALE-----LE 149

Query: 1136 NAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM 1195
            N  +  +      LSGG+ QR+AIA A+L+N      DE +S LD         A+ RL 
Sbjct: 150  NVLEREIQ----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS 205

Query: 1196 RGRTTVLVA-HRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQHHHI 1252
                +VLV  H L+ +  + D I VV  G     G      S+P G  + + +    ++
Sbjct: 206  EEGKSVLVVEHDLAVLDYLSDIIHVVY-GEPGVYGI----FSQPKGTRNGINEFLRGYL 259

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score =  108 bits (271), Expect = 2e-24
 Identities = 56/260 (21%), Positives = 101/260 (38%), Gaps = 30/260 (11%)

Query: 989  RSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASG 1048
            R   I                +    +   Y S       +     I+ G+   +VG +G
Sbjct: 267  RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322

Query: 1049 SGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAY 1108
             GK++ + ++    +PT GK+  D     +        + G V +   L +      +  
Sbjct: 323  IGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYE-GTVYE---LLSKIDASKL-- 376

Query: 1109 GKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 1168
                  + E+++             + + Y   V E    LSGG+ QR+AIA  +L++  
Sbjct: 377  -NSNFYKTELLKPLG----------IIDLYDREVNE----LSGGELQRVAIAATLLRDAD 421

Query: 1169 ILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIV 1225
            I LLDE ++ LD E    +  A+  LM    +T ++V H +  I  V D + +V +G   
Sbjct: 422  IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL-MVFEGEPG 480

Query: 1226 EQGSHSELVSRPDGAYSRLL 1245
            + G     +   +G  +R L
Sbjct: 481  KYGRALPPMGMREG-MNRFL 499

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score =  114 bits (287), Expect = 3e-28
 Identities = 54/226 (23%), Positives = 96/226 (42%), Gaps = 29/226 (12%)

Query: 1024 DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 1083
               + K  +  I  G+   L+G +G+GK++ + +I     P++G V + GK++       
Sbjct: 27   KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHE 85

Query: 1084 LRLKIGLVQQEPAL-----------FAASIFDNIAYGKEGATEAEVVEAARAANVHGFVS 1132
            +R  I  + +E              F A       Y    +   E               
Sbjct: 86   VRKLISYLPEEAGAYRNMQGIEYLRFVAGF-----YASSSSEIEE-----MVERATEIAG 135

Query: 1133 ALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 1192
             L    K  V       S G  +++ IARA++ NP + +LDE TS LD  +   +++ L+
Sbjct: 136  -LGEKIKDRVST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK 190

Query: 1193 RLMRGRTTVLV-AHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 1236
            +  +   T+LV +H +  +  + D I ++ +G IVE G+  EL  R
Sbjct: 191  QASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score =  111 bits (279), Expect = 4e-27
 Identities = 56/253 (22%), Positives = 114/253 (45%), Gaps = 22/253 (8%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +  K++      +  +   +  S     G+   ++G +G+GK+T + +I     P++G V
Sbjct: 16  VVVKDLRKRIGKKEIL---KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENI-----LYGKPEATMAEVEAAAS 478
            +   ++   +   +R  I  + +E   +     +E +      Y    + + E      
Sbjct: 73  TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE------ 125

Query: 479 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 538
                    +   G   ++ +R    S G  +++ IARA++ NP++ +LDE TS LD  +
Sbjct: 126 --MVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 181

Query: 539 ESIVQEALDRLMVGRTTVVV-AHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAGAYA 596
              V++ L +      T++V +H +  +  + D +A+I  G +VETGT EEL  +  A  
Sbjct: 182 AREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 241

Query: 597 SLIRFQEMVRNRD 609
               F+E+V+  +
Sbjct: 242 IEEVFEEVVKCSE 254

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score =  107 bits (271), Expect = 1e-26
 Identities = 38/228 (16%), Positives = 90/228 (39%), Gaps = 35/228 (15%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +E+R +   Y    D  V +   + I  G      G +G GK++++  I  +  P  G++
Sbjct: 11   LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIA-----YGKEGATEA--EVVEA 1121
            + +G  I ++     + KI  + +E  +    S+ D +      YG +       + +E+
Sbjct: 67   IYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121

Query: 1122 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
                ++   +                +LS G  +R+ +A  +L N  I +LD+   A+D 
Sbjct: 122  VEVLDLKKKLG---------------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166

Query: 1182 ESECVLQEALERLMR-GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 1228
            +S+  + +++  +++     ++ +    +    D    +         
Sbjct: 167  DSKHKVLKSILEILKEKGIVIISSREELSY--CDVNENLHKYSTKIDK 212

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 99.1 bits (248), Expect = 1e-23
 Identities = 38/226 (16%), Positives = 91/226 (40%), Gaps = 37/226 (16%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E ++++  Y    D  +    ++    G  V   G +G GK+T++  I  +  P  G +
Sbjct: 11  LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENI-----LYGKP--EATMAEVEAA 476
           + + V I       ++ +I  + +E  +    ++ + +     LYG    +  + +   +
Sbjct: 67  IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121

Query: 477 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
               +    +                +LS G  +R+ +A  +L N +I +LD+   A+D 
Sbjct: 122 VEVLDLKKKLG---------------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166

Query: 537 GSESIVQEALDRLMVGRTTVVVA--HRLSTIRNVDTVAVIQQGQVV 580
            S+  V +++  ++  +  V+++    LS     D    + +    
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISSREELSY---CDVNENLHKYSTK 209

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score =  106 bits (267), Expect = 1e-24
 Identities = 84/248 (33%), Positives = 130/248 (52%), Gaps = 44/248 (17%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            EI+L ++   +    +     + NL+I+ G+  AL+G SGSGKS+++  I   Y PT+GK
Sbjct: 3    EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59

Query: 1069 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG----KEGATE--AEVVEA 1121
            +  D KD+  L  K  R  +GLV Q  AL+   +++ NIA+     K    E   +V E 
Sbjct: 60   IYFDEKDVTELPPKD-R-NVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREV 117

Query: 1122 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
            A+  ++   ++  P            QLSGGQ+QR+AIARA++K P +LLLDE  S LDA
Sbjct: 118  AKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166

Query: 1182 E------SECVLQEALERLMRGRTTVLVAH------RLSTIRGVDCIGVVQDGRIVEQGS 1229
                   +E  L+   + L  G TTV V H       ++     D I V+++G I++ G+
Sbjct: 167  LLRLEVRAE--LKRLQKEL--GITTVYVTHDQAEALAMA-----DRIAVIREGEILQVGT 217

Query: 1230 HSELVSRP 1237
              E+  +P
Sbjct: 218  PDEVYYKP 225

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 85.7 bits (213), Expect = 9e-18
 Identities = 75/246 (30%), Positives = 122/246 (49%), Gaps = 48/246 (19%)

Query: 364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
            I+ +N+   +    +     + ++    G+ +A++G SGSGKST++  I   Y P +G 
Sbjct: 3   EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59

Query: 424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYG-----KPEATMAE-VEAA 476
           +  D  D+  L  +  R+ +GLV Q  AL+   T+ +NI +       P   + + V   
Sbjct: 60  IYFDEKDVTELPPK-DRN-VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREV 117

Query: 477 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
           A   +    +   P            QLSGGQ+QR+AIARA++K P++LLLDE  S LDA
Sbjct: 118 AKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166

Query: 537 G------SESIVQEALDRL--MVGRTTVVVAH------RLSTIRNVDTVAVIQQGQVVET 582
                  +E      L RL   +G TTV V H       ++     D +AVI++G++++ 
Sbjct: 167 LLRLEVRAE------LKRLQKELGITTVYVTHDQAEALAMA-----DRIAVIREGEILQV 215

Query: 583 GTHEEL 588
           GT +E+
Sbjct: 216 GTPDEV 221

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 99.2 bits (248), Expect = 3e-22
 Identities = 70/252 (27%), Positives = 115/252 (45%), Gaps = 52/252 (20%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
             I + ++   +     V      +  ++ G+  AL+G SG GK++ + ++   Y PT+G+
Sbjct: 3    SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59

Query: 1069 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG----KEGATE--AEVVEA 1121
            +  D   +  +  K  R ++G+V Q  AL+   ++F+NIA+     +    E    VVE 
Sbjct: 60   IYFDDVLVNDIPPKY-R-EVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEI 117

Query: 1122 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
            AR   +   +   P            QLSGGQ+QR+A+ARA++K P +LL DE  S LDA
Sbjct: 118  ARKLLIDNLLDRKPT-----------QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166

Query: 1182 ESECVLQEALERLMR----------GRTTVLVAH------RLSTIRGVDCIGVVQDGRIV 1225
                     L  +MR          G T+V V H       ++       I V   G++V
Sbjct: 167  --------NLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMA-----SRIAVFNQGKLV 213

Query: 1226 EQGSHSELVSRP 1237
            + G+  E+   P
Sbjct: 214  QYGTPDEVYDSP 225

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 76.9 bits (190), Expect = 6e-15
 Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 23/180 (12%)

Query: 364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           +I   N+   +     V      S     G+ VA++G SG GK+T + ++   Y P +G 
Sbjct: 3   SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59

Query: 424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYG-----KPEATMAE-VEAA 476
           +  D+V +  +  +  R+ +G+V Q  AL+   T+ ENI +        +  + + V   
Sbjct: 60  IYFDDVLVNDIPPK-YRE-VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEI 117

Query: 477 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
           A      + +   P            QLSGGQ+QR+A+ARA++K PK+LL DE  S LDA
Sbjct: 118 ARKLLIDNLLDRKPT-----------QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 98.1 bits (245), Expect = 7e-22
 Identities = 72/255 (28%), Positives = 117/255 (45%), Gaps = 58/255 (22%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV---IALIERFYDPT 1065
            E++L ++   +    +       NL I+ G+   L+G SG GK++    IA +E   +PT
Sbjct: 11   EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE---EPT 64

Query: 1066 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYG----KEGATE--AEV 1118
             G++    +D+  L  K  R  I +V Q  A++   ++++NIA+     K    E    V
Sbjct: 65   EGRIYFGDRDVTYLPPKD-R-NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV 122

Query: 1119 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
              AA    +   ++  P            QLSGGQ+QR+A+ARA++  P +LL+DE  S 
Sbjct: 123  RWAAELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171

Query: 1179 LDAESECVLQEALERLMR----------GRTTVLVAH------RLSTIRGVDCIGVVQDG 1222
            LDA+        L   MR            TT+ V H       +      D I V+  G
Sbjct: 172  LDAK--------LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG-----DRIAVMNRG 218

Query: 1223 RIVEQGSHSELVSRP 1237
            ++++ GS +E+  RP
Sbjct: 219  QLLQIGSPTEVYLRP 233

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 76.1 bits (188), Expect = 1e-14
 Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 23/180 (12%)

Query: 364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
            ++ +N+T  +    +       ++    G+ + ++G SG GK+T + +I    +P  G 
Sbjct: 11  EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67

Query: 424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYG-----KPEATMAE-VEAA 476
           +   + D+  L  +  R+ I +V Q  A++   T+ ENI +       P+  + + V  A
Sbjct: 68  IYFGDRDVTYLPPK-DRN-ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 125

Query: 477 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
           A        +   P            QLSGGQ+QR+A+ARA++  P +LL+DE  S LDA
Sbjct: 126 AELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 174

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 96.5 bits (241), Expect = 2e-21
 Identities = 68/255 (26%), Positives = 117/255 (45%), Gaps = 52/255 (20%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV---IALIERFYDPT 1065
             + L  V   +    +V   ++ +L ++ G+   L+G SG GK++    IA +E   +P+
Sbjct: 3    GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE---EPS 56

Query: 1066 AGKVMIDGKDI-RRLNLKSLRLK---IGLVQQEPALFA-ASIFDNIAYG----KEGATE- 1115
             G++ I  K +        +  K   I +V Q  AL+   +++DNIA+     K    E 
Sbjct: 57   RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI 116

Query: 1116 -AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 1174
               V E A    +   ++  P            +LSGGQ+QR+A+ RA+++ P + L+DE
Sbjct: 117  DQRVREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDE 165

Query: 1175 ATSALDAE------SECVLQEALERLMRGRTTVLVAH------RLSTIRGVDCIGVVQDG 1222
              S LDA+      +E  L++   +L  G TT+ V H       +      D I V+  G
Sbjct: 166  PLSNLDAKLRVRMRAE--LKKLQRQL--GVTTIYVTHDQVEAMTMG-----DRIAVMNRG 216

Query: 1223 RIVEQGSHSELVSRP 1237
             + + GS  E+  +P
Sbjct: 217  VLQQVGSPDEVYDKP 231

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 75.3 bits (186), Expect = 2e-14
 Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 27/185 (14%)

Query: 364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
            +   +V   +    +V   R+ S+    G+ + ++G SG GK+T + +I    +P+ G 
Sbjct: 3   GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59

Query: 424 VLLDNVDIKTLQLRWL-----RDQIGLVNQEPALFAT-TILENILYG-----KPEATMAE 472
           + + +  +   +         RD I +V Q  AL+   T+ +NI +       P   + +
Sbjct: 60  IYIGDKLVADPEKGIFVPPKDRD-IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ 118

Query: 473 -VEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT 531
            V   A        +   P            +LSGGQ+QR+A+ RA+++ P++ L+DE  
Sbjct: 119 RVREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPL 167

Query: 532 SALDA 536
           S LDA
Sbjct: 168 SNLDA 172

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 89.9 bits (224), Expect = 5e-20
 Identities = 61/231 (26%), Positives = 100/231 (43%), Gaps = 44/231 (19%)

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI- 443
             SI    G    ++G +GSGKST++++I  F   + G V  +N DI   +      ++ 
Sbjct: 25  GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE----PAELY 80

Query: 444 --GLVN--QEPALFAT-TILENILYG-------------KPEATMAEVEAAASAANAHSF 485
             G+V   Q P      T+LEN+L G               +    E E    A     F
Sbjct: 81  HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140

Query: 486 ITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAG---SESIV 542
           + L     S     +  +LSGGQ + + I RA++ NPK++++DE      AG     +  
Sbjct: 141 LKL-----SHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPI----AGVAPGLA-- 189

Query: 543 QEALDRLMV-----GRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEE 587
              +   ++     G T +++ HRL  + N  D + V+  GQ++  G  EE
Sbjct: 190 -HDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 83.3 bits (207), Expect = 1e-17
 Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 36/231 (15%)

Query: 1030 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL---------- 1079
              ++ +  G    ++G +GSGKS++I +I  F     G+V  + KDI             
Sbjct: 25   GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84

Query: 1080 -----NLKSLR-------LKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANV 1127
                   + L+       L IG +    +   +  +      K    E E+VE  +A  +
Sbjct: 85   VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFY-----KKWIPKEEEMVE--KAFKI 137

Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
              F+  L + Y    G    +LSGGQ + + I RA++ NP ++++DE  + +       +
Sbjct: 138  LEFLK-LSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 192

Query: 1188 QEALERL-MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSR 1236
               +  L  +G T +++ HRL  +    D + V+ +G+I+ +G   E +  
Sbjct: 193  FNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 89.9 bits (224), Expect = 4e-19
 Identities = 79/257 (30%), Positives = 115/257 (44%), Gaps = 60/257 (23%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV---IALIERFYDPT 1065
             ++L++V  A+    +VVV KD NL I  G+    VG SG GKS++   IA +E     T
Sbjct: 3    SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TIT 56

Query: 1066 AGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAE----V 1118
            +G + I  K +        R  +G+V Q  AL+   S+ +N+++G +  GA +      V
Sbjct: 57   SGDLFIGEKRMNDTPPAE-R-GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV 114

Query: 1119 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
             + A    +   +   P             LSGGQ+QR+AI R ++  P++ LLDE  S 
Sbjct: 115  NQVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163

Query: 1179 LDAESECVLQEALERLMR----------GRTTVLVAH------RLSTIRGVDCIGVVQDG 1222
            LDA        AL   MR          GRT + V H       L+     D I V+  G
Sbjct: 164  LDA--------ALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA-----DKIVVLDAG 210

Query: 1223 RIVEQ-GSHSELVSRPD 1238
            R+  Q G   EL   P 
Sbjct: 211  RV-AQVGKPLELYHYPA 226

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 62.9 bits (154), Expect = 2e-10
 Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 29/183 (15%)

Query: 364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLI---ERFYDPN 420
           +++ +NVT ++    +V++ +D ++    G+ V  VG SG GKST++ +I   E      
Sbjct: 3   SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TIT 56

Query: 421 AGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG-----KPEATMAE-V 473
           +G + +    +        R  +G+V Q  AL+   ++ EN+ +G       +  + + V
Sbjct: 57  SGDLFIGEKRMNDTPPA-ERG-VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRV 114

Query: 474 EAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSA 533
              A        +   P             LSGGQ+QR+AI R ++  P + LLDE  S 
Sbjct: 115 NQVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 163

Query: 534 LDA 536
           LDA
Sbjct: 164 LDA 166

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 85.9 bits (212), Expect = 5e-17
 Identities = 46/200 (23%), Positives = 77/200 (38%), Gaps = 31/200 (15%)

Query: 1010 IELRHVDFAYPSRP--DVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
             E   +     S      ++     LR++  +   + G +G GKS+++  I       A 
Sbjct: 431  DEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAI-------AN 483

Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA--SIFDNIAYGKEGATEAEVVEAARAA 1125
               +DG   +         +   V+ +     +  S+ D +    E     +        
Sbjct: 484  G-QVDGFPTQE------ECRTVYVEHDIDGTHSDTSVLDFV---FESGVGTKE-AIKDKL 532

Query: 1126 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 1185
               GF          P+      LSGG K ++A+ARAVL+N  ILLLDE T+ LD  +  
Sbjct: 533  IEFGF---TDEMIAMPISA----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585

Query: 1186 VLQEALERLMRGRTTVLVAH 1205
             L   L     G T++ ++H
Sbjct: 586  WLVNYLNTC--GITSITISH 603

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 79.7 bits (196), Expect = 4e-15
 Identities = 57/305 (18%), Positives = 107/305 (35%), Gaps = 40/305 (13%)

Query: 325 LGAFSKGKAAGYKLMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFR 384
           +  F   K A   L E  K+    I    N    ++   ++     + +Y ++    +  
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI---LLN 452

Query: 385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG 444
              +     +   + G +G GKST++  I        G    +                 
Sbjct: 453 KTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD--GFPTQEECRT------------V 498

Query: 445 LVNQEPALFAT--TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGV 502
            V  +     +  ++L+ +     E+ +   EA         F        +  +     
Sbjct: 499 YVEHDIDGTHSDTSVLDFVF----ESGVGTKEAIKDKLIEFGF---TDEMIAMPISA--- 548

Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL 562
            LSGG K ++A+ARA+L+N  ILLLDE T+ LD  + + +   L+    G T++ ++H  
Sbjct: 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISHDS 605

Query: 563 STIRNVDTVAV-IQQGQVVE-TG---THEELIAKAGAYASLIRFQEMVRNRDFANPSTRR 617
             + NV    +  +  ++ +  G      +    A AY  L           F  P    
Sbjct: 606 VFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEEL---SNTDLEFKFPEPGYLE 662

Query: 618 SRSTR 622
              T+
Sbjct: 663 GVKTK 667

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 68.5 bits (167), Expect = 1e-11
 Identities = 38/243 (15%), Positives = 85/243 (34%), Gaps = 12/243 (4%)

Query: 984  FSTLDRSTRIDPDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQAL 1043
            F+ ++      P +      +T      +   +          + K F +    G  + +
Sbjct: 746  FAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIE---GTPRRI 802

Query: 1044 VGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIF 1103
             G     K       E  +       M   + +  +++ +  +  G + +  +   A + 
Sbjct: 803  AGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVD 862

Query: 1104 DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 1163
               A            E     ++ G          + +      LSGGQK ++ +A   
Sbjct: 863  MKEALASGQFRPLTRKEIEEHCSMLGLDP--EIVSHSRIR----GLSGGQKVKLVLAAGT 916

Query: 1164 LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDG 1222
             + P +++LDE T+ LD +S   L +AL+        +++ H     + + + +  V+DG
Sbjct: 917  WQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDG 974

Query: 1223 RIV 1225
            R+ 
Sbjct: 975  RMT 977

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 60.0 bits (145), Expect = 4e-09
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRL 562
            LSGGQK ++ +A    + P +++LDE T+ LD  S   + +AL         +++ H  
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSA 958

Query: 563 STIRNV-DTVAVIQQGQVV 580
              +N+ + V  ++ G++ 
Sbjct: 959 EFTKNLTEEVWAVKDGRMT 977

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 49.6 bits (118), Expect = 7e-06
 Identities = 22/189 (11%), Positives = 55/189 (29%), Gaps = 16/189 (8%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +++ +++F YP         D N +       A++G +G+GKS++I ++     PT+G+V
Sbjct: 672  VKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHG 1129
                             +I  ++Q       S  D               +       + 
Sbjct: 731  YTHEN-----------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANR 779

Query: 1130 FVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQE 1189
             ++         + +    + G  ++   I                    +   +     
Sbjct: 780  QINENDAEAMNKIFK----IEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWV 835

Query: 1190 ALERLMRGR 1198
             +  +    
Sbjct: 836  PMMSVDNAW 844

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 47.7 bits (113), Expect = 2e-05
 Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 15/109 (13%)

Query: 324 NLGAFSKGKAA-------GYKLMEIIKQKPSIIQDP-TNGRCLDEVNGNIEFKNVTFSYP 375
           N   F K   A           +E    +P  ++   T  + + +V       N+ F YP
Sbjct: 629 NFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKV------TNMEFQYP 682

Query: 376 SRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
                    D +        +AV+G +G+GKST+++++     P +G V
Sbjct: 683 G-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 77.9 bits (193), Expect = 5e-16
 Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 30/238 (12%)

Query: 366 EFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL 425
           E +++   Y     +   +   +  P G+ V ++G +G+GK+T +S I        G ++
Sbjct: 8   EVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64

Query: 426 LDNVDIKTLQLRWL-RDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAH 483
            +  DI       + R  I LV +   +F   T+ EN++ G   A   + +         
Sbjct: 65  FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG---AYNRKDKEGIKRDLEW 121

Query: 484 SFITLLPNGYSTQVGERGVQ----LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
            F +L P     ++ ER  Q    LSGG++Q +AI RA++  PK+L++DE +  L   + 
Sbjct: 122 IF-SLFP-----RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---AP 172

Query: 540 SIVQE---ALDRLMVGRTTVVV----AHRLSTIRNVDTVAVIQQGQVVETGTHEELIA 590
            +V E    + ++    TT+++    A     ++      V++ GQ+V  G   EL+ 
Sbjct: 173 ILVSEVFEVIQKINQEGTTILLVEQNALG--ALKVAHYGYVLETGQIVLEGKASELLD 228

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 77.1 bits (191), Expect = 1e-15
 Identities = 62/251 (24%), Positives = 114/251 (45%), Gaps = 50/251 (19%)

Query: 1011 ELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVM 1070
            E++ +   Y     +   K  +L++  GQ   L+GA+G+GK++ ++ I        GK++
Sbjct: 8    EVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64

Query: 1071 IDGKDIRRLNLKSL-RLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVH 1128
             +G+DI       + R+ I LV +   +F   ++++N+  G           A    +  
Sbjct: 65   FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG-----------AYNRKDKE 113

Query: 1129 GFVSALPNAYKT-PV-GERGVQ----LSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 1182
            G    L   +   P   ER  Q    LSGG++Q +AI RA++  P +L++DE +  L   
Sbjct: 114  GIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL--- 170

Query: 1183 SECVLQE---ALERLMRGRTTVL-----------VAHRLSTIRGVDCIG-VVQDGRIVEQ 1227
            +  ++ E    ++++ +  TT+L           VAH           G V++ G+IV +
Sbjct: 171  APILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHY----------GYVLETGQIVLE 220

Query: 1228 GSHSELVSRPD 1238
            G  SEL+    
Sbjct: 221  GKASELLDNEM 231

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 5e-10
 Identities = 66/351 (18%), Positives = 102/351 (29%), Gaps = 117/351 (33%)

Query: 336 YK-LMEIIKQKPSIIQDPTNGR-----CLDEV-NGNIEFK--NVTFSYPSRPDVII---- 382
           YK LM  IK +    + P+          D + N N  F   NV+     R    +    
Sbjct: 91  YKFLMSPIKTEQ---RQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQ 142

Query: 383 ----FRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW 438
                R         K V + G  GSGK+ V   +   Y        +D       ++ W
Sbjct: 143 ALLELRP-------AKNVLIDGVLGSGKTWVALDVCLSYKV---QCKMDF------KIFW 186

Query: 439 LRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVG 498
           L   +   N    +    +L+ +LY                        + PN   T   
Sbjct: 187 LN--LKNCNSPETVLE--MLQKLLY-----------------------QIDPNW--TSRS 217

Query: 499 ERGVQLSGGQKQRIAIARAMLKN-------PKILL-LDEATSALDAGSESIVQEALD--- 547
           +    +    K RI   +A L+           LL L       +  +      A +   
Sbjct: 218 DHSSNI----KLRIHSIQAELRRLLKSKPYENCLLVLL------NVQNAKAW-NAFNLSC 266

Query: 548 RLMVGRTT--VVVAHRLSTIRNVDTVAVIQQGQVVETGTHEE---LIAKAGAYASLIRFQ 602
           ++++  TT    V   LS      T   I       T T +E   L+ K   Y    R Q
Sbjct: 267 KILL--TTRFKQVTDFLS----AATTTHISLDHHSMTLTPDEVKSLLLK---YLD-CRPQ 316

Query: 603 EMVRNRDFANP----------STRRSRSTRLSHSLSTKSLSLRSGSLRNLS 643
           ++ R     NP              +      H    K  ++   SL  L 
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 4e-08
 Identities = 103/651 (15%), Positives = 168/651 (25%), Gaps = 214/651 (32%)

Query: 655  EMVSNAETDR--KNPAPDGYFLRLLK--LNAPEWPYSIMGAIGSVLS---GFIGPTFAIV 707
             ++S  E D    +       LRL    L+  E        +  VL     F+       
Sbjct: 44   SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK--FVEEVLRINYKFLMSPIKTE 101

Query: 708  M--ACMIEVFY--YRNP------------------------ASMERKTKEFVFIY--IGA 737
                 M+   Y   R+                         A +E +  + V I   +G+
Sbjct: 102  QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 738  G---LYAVVA--YLIQHYF-FSI----MGENLTTRVRRMMLAAILRNEVGWFDEEEHNSS 787
            G   +   V   Y +Q    F I    +    +      ML  +L      +     +SS
Sbjct: 162  GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 788  LVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYP--LLVL 845
             +  R+         +I   +  +L++                         Y   LLVL
Sbjct: 222  NIKLRI--------HSIQAELRRLLKSKP-----------------------YENCLLVL 250

Query: 846  ANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQ 905
             N                            V N +   AFN   KIL        +    
Sbjct: 251  LN----------------------------VQNAKAWNAFNLSCKIL--------L---- 270

Query: 906  TLR-----RSLTAGILFGIS----QFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVL 956
            T R       L+A     IS       L   E   L               K +      
Sbjct: 271  TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-------------LLKYLDC---- 313

Query: 957  VVTANSVAETVSLAPEIIRGGESVGSVFSTL--DRSTRIDP-DDPDAEPVETIRGEIELR 1013
                        L  E++       S+ +    D     D     + + + TI  E  L 
Sbjct: 314  --------RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESSLN 364

Query: 1014 HVDFAYPSR--PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIA-------LIERFYDP 1064
             ++ A   +    + VF   +  I       +          V+        L+E+   P
Sbjct: 365  VLEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--QP 421

Query: 1065 TAGKVMIDGKDIR----RLNLKSLRLKIGLVQQ-------EPALFAASIFDN-----IAY 1108
                + I    +       N  +L   I  V         +         D      I +
Sbjct: 422  KESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 1109 GKEGATEAEVVEAARAA--NVHGFVSALPNAYKTPVGERGVQLSGGQ-----KQRI---- 1157
              +     E +   R    +   F+        T     G  L+  Q     K  I    
Sbjct: 480  HLKNIEHPERMTLFRMVFLDFR-FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538

Query: 1158 --------AIARAVLKNPAILLLDEATS----ALDAESECVLQEALERLMR 1196
                    AI   + K    L+  + T     AL AE E + +EA +++ R
Sbjct: 539  PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 8e-07
 Identities = 63/485 (12%), Positives = 128/485 (26%), Gaps = 161/485 (33%)

Query: 336 YKLMEIIKQKP-SIIQDPTNGRCLDEV-NGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAG 393
            +L   +  K   ++Q     + ++EV   N +F         R             P+ 
Sbjct: 65  LRLFWTLLSKQEEMVQ-----KFVEEVLRINYKFLMSPIKTEQRQ------------PSM 107

Query: 394 KTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD-NV----DIKTLQ--LRWLRDQIGLV 446
            T              +   +R Y  N   V    NV        L+  L  LR    ++
Sbjct: 108 MTR-----------MYIEQRDRLY--NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154

Query: 447 NQEPALFATTILENILYGKPEATMA----EVEAAASAANAHSFITLLPNGYSTQVGERGV 502
                          + G     +         A     ++     +            +
Sbjct: 155 ---------------IDG-----VLGSGKTW-VALDVCLSYKVQCKMDF---------KI 184

Query: 503 Q-LSGGQKQRIAIARAMLKNPKILL--LDEATSALDAGSESI------VQEALDRLMVGR 553
             L+            ML+    LL  +D   ++    S +I      +Q  L RL+  +
Sbjct: 185 FWLNLKNCNSPETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 554 TTVVVAHRLSTIRNVDTVAVIQ----QGQVVETGTHEELIAKAGAYASLIRFQEMVRNRD 609
                 + L  + NV             +++ T T          +  +  F        
Sbjct: 242 ---PYENCLLVLLNVQNAKAWNAFNLSCKILLT-T---------RFKQVTDFLSAATTTH 288

Query: 610 FANPSTRRSRSTRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRKNPAP 669
            +      + +     SL  K L  R   L               E+++       NP  
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-------------EVLTT------NP-- 327

Query: 670 DGYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKE 729
                R L +            I   +   +            +   +++    +  T  
Sbjct: 328 -----RRLSI------------IAESIRDGL---------ATWD--NWKHVNCDKLTTI- 358

Query: 730 FVFIYIGAGLYAVVAYLIQHYF--FSIMGE--NLTTRVRRMMLAAILRNEVGWFDEEEHN 785
                I + L  +     +  F   S+     ++ T +  ++   +++++V     + H 
Sbjct: 359 -----IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 786 SSLVA 790
            SLV 
Sbjct: 414 YSLVE 418

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 54.3 bits (130), Expect = 1e-07
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 10/95 (10%)

Query: 1148 QLSGGQKQ------RIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTT 1200
             LSGG++       R+A++  +    ++L+LDE T  LD E    L   +ER ++     
Sbjct: 248  FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 307

Query: 1201 VLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 1235
            +LV+H        D +  +    +    S  E+VS
Sbjct: 308  ILVSHDEELKDAADHVIRI---SLENGSSKVEVVS 339

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 52.0 bits (124), Expect = 6e-07
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 13/91 (14%)

Query: 503 QLSGGQKQ------RIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTT 555
            LSGG++       R+A++  +     +L+LDE T  LD      +   ++R +      
Sbjct: 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 307

Query: 556 VVVAHRLSTIRNVDTVAVIQ------QGQVV 580
           ++V+H        D V  I       + +VV
Sbjct: 308 ILVSHDEELKDAADHVIRISLENGSSKVEVV 338

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 1148 QLSGGQKQRIAIA------RAVLKNPAILLLDEATSALDAESECVLQEALERLMR-GRTT 1200
             LSGG++  + +A        +    ++L+LDE T  LD E    L   +ER ++     
Sbjct: 57   FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116

Query: 1201 VLVAHRLSTIRGVDCI 1216
            +LV+H        D +
Sbjct: 117  ILVSHDEELKDAADHV 132

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 13/91 (14%)

Query: 503 QLSGGQKQRIAIA------RAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTT 555
            LSGG++  + +A        +     +L+LDE T  LD      +   ++R +      
Sbjct: 57  FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116

Query: 556 VVVAHRLSTIRNVDTV------AVIQQGQVV 580
           ++V+H        D V          + +VV
Sbjct: 117 ILVSHDEELKDAADHVIRISLENGSSKVEVV 147

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 64/243 (26%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKS---SVIALIERFYDPTAGKVMIDGKDIRRL------ 1079
            K  NL +  G+  AL+G +G+GKS    ++A     Y    G++++DG++I  L      
Sbjct: 20   KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENILELSPDERA 78

Query: 1080 ------------------NLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVE- 1120
                                  LRL +                   +  +     E+++ 
Sbjct: 79   RKGLFLAFQYPVEVPGVTIANFLRLALQAKLGRE-------VGVAEFWTKVKKALELLDW 131

Query: 1121 ----AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 1176
                 +R  N  GF                   SGG+K+R  I + ++  P   +LDE  
Sbjct: 132  DESYLSRYLNE-GF-------------------SGGEKKRNEILQLLVLEPTYAVLDETD 171

Query: 1177 SALDAESECVLQEALERLMR-GRTTVLVAH--RLSTIRGVDCIGVVQDGRIVEQGSHSEL 1233
            S LD ++  V+   +  +       +++ H  R+      D + V+ DGR+V  G   EL
Sbjct: 172  SGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGG-PEL 230

Query: 1234 VSR 1236
               
Sbjct: 231  ALE 233

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 45.2 bits (108), Expect = 6e-05
 Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 505 SGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV-GRTTVVVAH--R 561
           SGG+K+R  I + ++  P   +LDE  S LD  +  +V   ++ +       +V+ H  R
Sbjct: 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204

Query: 562 LSTIRNVDTVAVIQQGQVVETGTHE 586
           +      D V V+  G+VV TG  E
Sbjct: 205 ILNYIQPDKVHVMMDGRVVATGGPE 229

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 50.6 bits (122), Expect = 1e-06
 Identities = 59/240 (24%), Positives = 97/240 (40%), Gaps = 54/240 (22%)

Query: 1029 KDFNLRIRAGQSQALVGASGSGKS---SVIALIERFYDPTAGKVMIDGKDIRRL------ 1079
            +  +L +  G+  A++G +GSGKS   + +A  E  Y+ T G V   GKD+  L      
Sbjct: 37   RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLALSPEDRA 95

Query: 1080 ------------------NLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVE- 1120
                              N   L+  +  V+          FD     +E     ++ E 
Sbjct: 96   GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED 155

Query: 1121 -AARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL 1179
               R+ NV GF                   SGG+K+R  I +  +  P + +LDE+ S L
Sbjct: 156  LLTRSVNV-GF-------------------SGGEKKRNDILQMAVLEPELCILDESDSGL 195

Query: 1180 DAESECVLQEALERLMR-GRTTVLVAH--RLSTIRGVDCIGVVQDGRIVEQGSHSELVSR 1236
            D ++  V+ + +  L    R+ ++V H  R+      D + V+  GRIV+ G    LV +
Sbjct: 196  DIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD-FTLVKQ 254

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 48.7 bits (117), Expect = 5e-06
 Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 37/229 (16%)

Query: 382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLI---ERFYDPNAGHVLLDNVDIKTLQLRW 438
           I R  S+    G+  A++G +GSGKST+ + +   E  Y+   G V     D+  L    
Sbjct: 35  ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLALSP-E 92

Query: 439 LRDQIG--LVNQEP--------ALFATTILENILYGKPEATMAEVEAAASAANAHSFITL 488
            R   G  +  Q P          F  T L  +   + + T+          +   F  L
Sbjct: 93  DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETL----------DRFDFQDL 142

Query: 489 LPNGYSTQVG------ERGVQ--LSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
           +       +        R V    SGG+K+R  I +  +  P++ +LDE+ S LD  +  
Sbjct: 143 M-EEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALK 201

Query: 541 IVQEALDRLMV-GRTTVVVAH--RLSTIRNVDTVAVIQQGQVVETGTHE 586
           +V + ++ L    R+ ++V H  R+      D V V+ QG++V++G   
Sbjct: 202 VVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 46.4 bits (110), Expect = 4e-05
 Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 503 QLSGGQKQRIAIA-------RAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTT 555
            LSGG++  +A++         +    + ++LDE T  LD    + + E   ++      
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339

Query: 556 VVVAHRLSTIRNVDTVAVIQQGQ 578
           +++ H        D +  +++  
Sbjct: 340 IIITHHRELEDVADVIINVKKDG 362

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 46.0 bits (109), Expect = 6e-05
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 12/94 (12%)

Query: 1148 QLSGGQKQRI------AIARAVLKNPA-ILLLDEATSALDAESECVLQEALERLMRGRTT 1200
             LSGG++  +      AIA A++ N    ++LDE T  LD      L E   ++      
Sbjct: 280  NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339

Query: 1201 VLVAHRLSTIRGVDC-IGVVQDGRIVEQGSHSEL 1233
            +++ H        D  I V +DG      S  ++
Sbjct: 340  IIITHHRELEDVADVIINVKKDG----NVSKVKI 369

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 11/93 (11%)

Query: 394 KTVAVVGGSGSGKSTVVSLIERFYDP--NAGHVLLDNVDIKTLQLRWLRDQIGLVNQE-- 449
           K + + G  GSGKS    L++           V+     I+      L D    + +   
Sbjct: 2   KVILITGMPGSGKSEFAKLLKERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYG 61

Query: 450 PALFATTILENILYGKPEA-------TMAEVEA 475
             + A   +E +     +        ++AEVE 
Sbjct: 62  DGVVARLCVEELGTSNHDLVVFDGVRSLAEVEE 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1252
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	1e-102
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	1e-101
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-95
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-92
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	1e-90
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	6e-86
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	9e-87
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	1e-84
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	3e-85
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	3e-82
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	6e-74
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	3e-69
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	1e-51
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-49
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	2e-45
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	3e-42
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	7e-44
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	7e-42
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	8e-44
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	9e-42
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	1e-43
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	1e-42
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	6e-38
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	5e-36
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	1e-37
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	8e-36
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	2e-36
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	1e-35
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	3e-35
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	2e-34
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	4e-35
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	4e-35
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	5e-35
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	7e-35
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	4e-34
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	2e-31
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	7e-33
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	5e-32
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	1e-32
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	8e-31
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	1e-23
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	3e-22
d2hyda2	323	f.37.1.1 (A:1-323) Putative multidrug export ATP-b	4e-11
d2hyda2	323	f.37.1.1 (A:1-323) Putative multidrug export ATP-b	3e-09
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-10
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	4e-10
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	0.001
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	3e-10
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	3e-10
d3b60a2	319	f.37.1.1 (A:10-328) Multidrug resistance ABC trans	6e-09
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	1e-07
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	1e-06
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	0.004

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  321 bits (825), Expect = e-102
 Identities = 137/256 (53%), Positives = 175/256 (68%), Gaps = 1/256 (0%)

Query: 349 IQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKST 408
           I++    + ++   G I+  +V+F Y    +  I +D ++    G+TVA VG SG GKST
Sbjct: 1   IKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKST 59

Query: 409 VVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEA 468
           +++LI RFYD  +G +L+D  +IK      LR+QIGLV Q+  LF+ T+ ENIL G+P A
Sbjct: 60  LINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA 119

Query: 469 TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLD 528
           T  EV  AA  ANAH FI  LP GY T+VGERGV+LSGGQKQR++IAR  L NP IL+LD
Sbjct: 120 TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILD 179

Query: 529 EATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEEL 588
           EATSALD  SESI+QEALD L   RTT++VAHRLSTI + D + VI+ G +VETGTH EL
Sbjct: 180 EATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHREL 239

Query: 589 IAKAGAYASLIRFQEM 604
           IAK GAY  L   Q +
Sbjct: 240 IAKQGAYEHLYSIQNL 255

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  319 bits (820), Expect = e-101
 Identities = 132/254 (51%), Positives = 179/254 (70%), Gaps = 2/254 (0%)

Query: 996  DDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVI 1055
            +   A+P+E  +G I++ HV F Y    +  + KD NL I  G++ A VG SG GKS++I
Sbjct: 3    NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLI 61

Query: 1056 ALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATE 1115
             LI RFYD T+G+++IDG +I+     SLR +IGLVQQ+  LF+ ++ +NI  G+  AT+
Sbjct: 62   NLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD 121

Query: 1116 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 1175
             EVVEAA+ AN H F+  LP  Y T VGERGV+LSGGQKQR++IAR  L NP IL+LDEA
Sbjct: 122  EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA 181

Query: 1176 TSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 1235
            TSALD ESE ++QEAL+ L + RTT++VAHRLSTI   D I V+++G IVE G+H EL++
Sbjct: 182  TSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 241

Query: 1236 RPDGAYSRLLQLQH 1249
            +  GAY  L  +Q+
Sbjct: 242  K-QGAYEHLYSIQN 254

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  304 bits (779), Expect = 1e-95
 Identities = 128/251 (50%), Positives = 170/251 (67%), Gaps = 2/251 (0%)

Query: 353 TNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSL 412
              R +D   G++EF+NVTF+YP R +V   R+ ++  PAGKTVA+VG SGSGKST+ SL
Sbjct: 2   EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASL 60

Query: 413 IERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEA-TMA 471
           I RFYD + GH+L+D  D++   L  LR+Q+ LV+Q   LF  T+  NI Y + E  +  
Sbjct: 61  ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSRE 120

Query: 472 EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEAT 531
           ++E AA  A A  FI  + NG  T +GE GV LSGGQ+QRIAIARA+L++  IL+LDEAT
Sbjct: 121 QIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 180

Query: 532 SALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK 591
           SALD  SE  +Q ALD L   RT++V+AHRLSTI   D + V++ G +VE GTH EL+A+
Sbjct: 181 SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 240

Query: 592 AGAYASLIRFQ 602
            G YA L + Q
Sbjct: 241 HGVYAQLHKMQ 251

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  295 bits (758), Expect = 1e-92
 Identities = 121/253 (47%), Positives = 174/253 (68%), Gaps = 3/253 (1%)

Query: 997  DPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIA 1056
            D     ++   G++E R+V F YP R +V   ++ NL+I AG++ ALVG SGSGKS++ +
Sbjct: 1    DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 59

Query: 1057 LIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK-EGATE 1115
            LI RFYD   G +++DG D+R   L SLR ++ LV Q   LF  ++ +NIAY + E  + 
Sbjct: 60   LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119

Query: 1116 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 1175
             ++ EAAR A    F++ + N   T +GE GV LSGGQ+QRIAIARA+L++  IL+LDEA
Sbjct: 120  EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 179

Query: 1176 TSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVS 1235
            TSALD ESE  +Q AL+ L + RT++++AHRLSTI   D I VV+DG IVE+G+HSEL++
Sbjct: 180  TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239

Query: 1236 RPDGAYSRLLQLQ 1248
            +  G Y++L ++Q
Sbjct: 240  Q-HGVYAQLHKMQ 251

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  290 bits (744), Expect = 1e-90
 Identities = 98/244 (40%), Positives = 157/244 (64%), Gaps = 3/244 (1%)

Query: 360 EVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP 419
            + G ++F++V+F+YP+RPDV++ +  +     G+  A+VG +GSGKSTV +L++  Y P
Sbjct: 7   HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP 66

Query: 420 NAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPEATMAEVEAAAS 478
             G +LLD   +   + R+L  Q+  V QEP +F  ++ ENI YG   + TM E+ AAA 
Sbjct: 67  TGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAV 126

Query: 479 AANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 538
            + AHSFI+ LP GY T+V E G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA S
Sbjct: 127 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 186

Query: 539 ESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYA 596
           +  V++ L        R+ +++   LS +   D +  ++ G + E GTH++L+ K G Y 
Sbjct: 187 QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYW 246

Query: 597 SLIR 600
           ++++
Sbjct: 247 AMVQ 250

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  277 bits (710), Expect = 6e-86
 Identities = 97/246 (39%), Positives = 151/246 (61%), Gaps = 4/246 (1%)

Query: 1004 ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 1063
              + G ++ + V FAYP+RPDV+V +     +R G+  ALVG +GSGKS+V AL++  Y 
Sbjct: 6    LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65

Query: 1064 PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYG-KEGATEAEVVEAA 1122
            PT G++++DGK + +   + L  ++  V QEP +F  S+ +NIAYG  +  T  E+  AA
Sbjct: 66   PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125

Query: 1123 RAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAE 1182
              +  H F+S LP  Y T V E G QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA 
Sbjct: 126  VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185

Query: 1183 SECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGA 1240
            S+  +++ L        R+ +L+   LS +   D I  ++ G I E G+H +L+ +  G 
Sbjct: 186  SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGC 244

Query: 1241 YSRLLQ 1246
            Y  ++Q
Sbjct: 245  YWAMVQ 250

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score =  279 bits (715), Expect = 9e-87
 Identities = 113/240 (47%), Positives = 158/240 (65%), Gaps = 1/240 (0%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            +I  R++ F Y      V+  + NL I+ G+   +VG SGSGKS++  LI+RFY P  G+
Sbjct: 1    DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59

Query: 1069 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVH 1128
            V+IDG D+   +   LR ++G+V Q+  L   SI DNI+    G +  +V+ AA+ A  H
Sbjct: 60   VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119

Query: 1129 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 1188
             F+S L   Y T VGE+G  LSGGQ+QRIAIARA++ NP IL+ DEATSALD ESE V+ 
Sbjct: 120  DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179

Query: 1189 EALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
              + ++ +GRT +++AHRLST++  D I V++ G+IVEQG H EL+S P+  YS L QLQ
Sbjct: 180  RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score =  273 bits (700), Expect = 1e-84
 Identities = 105/240 (43%), Positives = 157/240 (65%), Gaps = 2/240 (0%)

Query: 364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           +I F+N+ F Y      +I  + ++    G+ + +VG SGSGKST+  LI+RFY P  G 
Sbjct: 1   DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59

Query: 424 VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAH 483
           VL+D  D+      WLR Q+G+V Q+  L   +I++NI    P  ++ +V  AA  A AH
Sbjct: 60  VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
            FI+ L  GY+T VGE+G  LSGGQ+QRIAIARA++ NPKIL+ DEATSALD  SE ++ 
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179

Query: 544 EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK-AGAYASLIRFQ 602
             + ++  GRT +++AHRLST++N D + V+++G++VE G H+EL+++    Y+ L + Q
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  275 bits (704), Expect = 3e-85
 Identities = 111/239 (46%), Positives = 157/239 (65%), Gaps = 3/239 (1%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +  ++V F+Y     ++  RD S        +A  G SG GKST+ SL+ERFY P AG +
Sbjct: 2   LSARHVDFAYDDSEQIL--RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYG-KPEATMAEVEAAASAANAH 483
            +D   I  + L   R QIG V+Q+ A+ A TI EN+ YG + + T  ++      A A 
Sbjct: 60  TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
           SF+  +P+  +T+VGERGV++SGGQ+QR+AIARA L+NPKIL+LDEAT++LD+ SES+VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179

Query: 544 EALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ 602
           +ALD LM GRTT+V+AHRLSTI + D +  I++GQ+  +G H EL+A    YA  +  Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  267 bits (683), Expect = 3e-82
 Identities = 107/240 (44%), Positives = 157/240 (65%), Gaps = 4/240 (1%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +  RHVDFAY     +   +D +   +     A  G SG GKS++ +L+ERFY PTAG++
Sbjct: 2    LSARHVDFAYDDSEQI--LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVE-AARAANVH 1128
             IDG+ I  ++L++ R +IG V Q+ A+ A +I +N+ YG EG    E +      A   
Sbjct: 60   TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119

Query: 1129 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 1188
             FV  +P+   T VGERGV++SGGQ+QR+AIARA L+NP IL+LDEAT++LD+ESE ++Q
Sbjct: 120  SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179

Query: 1189 EALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248
            +AL+ LM+GRTT+++AHRLSTI   D I  ++ G+I   G H+ELV+     Y++ +  Q
Sbjct: 180  KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  245 bits (626), Expect = 6e-74
 Identities = 64/289 (22%), Positives = 122/289 (42%), Gaps = 21/289 (7%)

Query: 338 LMEIIKQKPSIIQDPTNGRCLDEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVA 397
             E   +    +Q     R       N+ F ++       P   + ++ ++    G+ +A
Sbjct: 12  WEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVG--NP---VLKNINLNIEKGEMLA 66

Query: 398 VVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTI 457
           + G +GSGK++++ LI    + + G +                 ++   +Q   +   TI
Sbjct: 67  ITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTI 113

Query: 458 LENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA 517
            ENI++G         ++   A      IT      +T +GE GV LSGGQ+ RI++ARA
Sbjct: 114 KENIIFG-VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARA 172

Query: 518 MLKNPKILLLDEATSALDAGSES-IVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ 576
           + K+  + LLD     LD  +E  + +  + +LM  +T ++V  ++  +R  D + ++ Q
Sbjct: 173 VYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQ 232

Query: 577 GQVVETGTHEELIAKAGAY-ASLIRFQEMVRNRDFANPSTRRSRSTRLS 624
           G     GT  EL +    + + L+ +    +  +    S       R S
Sbjct: 233 GSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRRFS 281

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  231 bits (591), Expect = 3e-69
 Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 20/255 (7%)

Query: 995  PDDPDAEPVETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSV 1054
                      +    +   H+       P   V K+ NL I  G+  A+ G++GSGK+S+
Sbjct: 24   QQSNGDRKHSSDENNVSFSHLCLVG--NP---VLKNINLNIEKGEMLAITGSTGSGKTSL 78

Query: 1055 IALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGAT 1114
            + LI    + + G +   G+             +    Q   +   +I +NI +G     
Sbjct: 79   LMLILGELEASEGIIKHSGR-------------VSFCSQFSWIMPGTIKENIIFGVS-YD 124

Query: 1115 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDE 1174
            E       +A  +   ++       T +GE GV LSGGQ+ RI++ARAV K+  + LLD 
Sbjct: 125  EYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDS 184

Query: 1175 ATSALDAES-ECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSEL 1233
                LD  + E V +  + +LM  +T +LV  ++  +R  D I ++  G     G+ SEL
Sbjct: 185  PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 244

Query: 1234 VSRPDGAYSRLLQLQ 1248
             S      S+L+   
Sbjct: 245  QSLRPDFSSKLMGYD 259

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  179 bits (455), Expect = 1e-51
 Identities = 69/229 (30%), Positives = 115/229 (50%), Gaps = 13/229 (5%)

Query: 1010 IELRHVDFAYPSR-PDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            I+L++V   Y      +   K+ NL I+ G+  +++G SGSGKS+++ +I     PT G+
Sbjct: 2    IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61

Query: 1069 VMIDGKDIRRLNLKSL----RLKIGLVQQEPALFA-ASIFDNIAYGKE--GATEAEVVEA 1121
            V ID      L+   L    R KIG V Q+  L    +  +N+               E 
Sbjct: 62   VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121

Query: 1122 ARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDA 1181
             + A     ++ L   +      +  QLSGGQ+QR+AIARA+  NP I+L D+ T ALD+
Sbjct: 122  RKRALECLKMAELEERFAN---HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178

Query: 1182 ESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQG 1228
            ++   + + L++L    G+T V+V H ++  R  + I  ++DG +  + 
Sbjct: 179  KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  173 bits (440), Expect = 2e-49
 Identities = 71/230 (30%), Positives = 116/230 (50%), Gaps = 13/230 (5%)

Query: 365 IEFKNVTFSYPSRPDVI-IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           I+ KNVT +Y    ++I   ++ ++    G+ V+++G SGSGKST++++I     P  G 
Sbjct: 2   IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61

Query: 424 VLLDNVDIKTL----QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEV--EAA 476
           V +DN+    L      +  RD+IG V Q+  L    T LEN+           +  E  
Sbjct: 62  VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121

Query: 477 ASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA 536
              A     +  L   ++     +  QLSGGQ+QR+AIARA+  NP I+L D+ T ALD+
Sbjct: 122 RKRALECLKMAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178

Query: 537 GSESIVQEALDRL--MVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT 584
            +   + + L +L    G+T VVV H ++  R  + +  ++ G+V     
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  161 bits (409), Expect = 2e-45
 Identities = 62/243 (25%), Positives = 117/243 (48%), Gaps = 18/243 (7%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            E++L ++   +    +       NL I+ G+   L+G SG GK++ + +I    +PT G+
Sbjct: 6    EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62

Query: 1069 VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGKE--GATEAEVVEAARAA 1125
            +    +D+  L        I +V Q  A++   ++++NIA+  +     + E+    R  
Sbjct: 63   IYFGDRDVTYLP--PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEI--DKRVR 118

Query: 1126 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 1185
                 +  +             QLSGGQ+QR+A+ARA++  P +LL+DE  S LDA+   
Sbjct: 119  WAAELLQ-IEELLNRYPA----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRV 173

Query: 1186 VLQEALERL--MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYS 1242
             ++  +++L      TT+ V H       + D I V+  G++++ GS +E+  RP+  + 
Sbjct: 174  AMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233

Query: 1243 RLL 1245
               
Sbjct: 234  ATF 236

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  152 bits (386), Expect = 3e-42
 Identities = 57/231 (24%), Positives = 107/231 (46%), Gaps = 14/231 (6%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           ++ +N+T  +    +       ++    G+ + ++G SG GK+T + +I    +P  G +
Sbjct: 7   VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 63

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAH 483
              + D+    L      I +V Q  A++   T+ ENI +        + E       A 
Sbjct: 64  YFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 121

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
             +          +     QLSGGQ+QR+A+ARA++  P +LL+DE  S LDA     ++
Sbjct: 122 ELL-----QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR 176

Query: 544 EALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 591
             + +L   +  TT+ V H       + D +AV+ +GQ+++ G+  E+  +
Sbjct: 177 AEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  157 bits (398), Expect = 7e-44
 Identities = 74/248 (29%), Positives = 128/248 (51%), Gaps = 25/248 (10%)

Query: 1010 IELRHVDFAYPSRPDVV-VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            I+L ++   +      +    + +L + AGQ   ++GASG+GKS++I  +     PT G 
Sbjct: 2    IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61

Query: 1069 VMIDGKDIRRLNLK---SLRLKIGLVQQEPALFA-ASIFDNIAYG------KEGATEAEV 1118
            V++DG+++  L+       R +IG++ Q   L +  ++F N+A         +   +  V
Sbjct: 62   VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121

Query: 1119 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSA 1178
             E      +     + P+            LSGGQKQR+AIARA+  NP +LL DEATSA
Sbjct: 122  TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170

Query: 1179 LDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVS 1235
            LD  +   + E L+ + R  G T +L+ H +  ++ + DC+ V+ +G ++EQ + SE+ S
Sbjct: 171  LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230

Query: 1236 RPDGAYSR 1243
             P    ++
Sbjct: 231  HPKTPLAQ 238

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  151 bits (383), Expect = 7e-42
 Identities = 75/235 (31%), Positives = 118/235 (50%), Gaps = 13/235 (5%)

Query: 365 IEFKNVTFSYPSRPDVI-IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH 423
           I+  N+T  +      I    + S+  PAG+   V+G SG+GKST++  +     P  G 
Sbjct: 2   IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61

Query: 424 VLLDNVDIKTL---QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASA 479
           VL+D  ++ TL   +L   R QIG++ Q   L ++ T+  N+          + E     
Sbjct: 62  VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121

Query: 480 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
               S +     G   +       LSGGQKQR+AIARA+  NPK+LL DEATSALD  + 
Sbjct: 122 TELLSLV-----GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176

Query: 540 SIVQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 591
             + E L  +   +G T +++ H +  ++ + D VAVI  G+++E  T  E+ + 
Sbjct: 177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score =  158 bits (400), Expect = 8e-44
 Identities = 69/266 (25%), Positives = 121/266 (45%), Gaps = 34/266 (12%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
            ++ +  +   Y       V K  +L+ RAG   +++G+SGSGKS+ +  I     P+ G 
Sbjct: 2    KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58

Query: 1069 VMIDGKDIRRLN-------------LKSLRLKIGLVQQEPALFA-ASIFDNIAYG---KE 1111
            ++++G++I  +              L+ LR ++ +V Q   L++  ++ +N+        
Sbjct: 59   IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118

Query: 1112 GATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILL 1171
            G ++ +  E  RA      V     A           LSGGQ+QR++IARA+   P +LL
Sbjct: 119  GLSKHDARE--RALKYLAKVGIDERAQGKYPV----HLSGGQQQRVSIARALAMEPDVLL 172

Query: 1172 LDEATSALDA-ESECVLQEALERLMRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGS 1229
             DE TSALD      VL+   +    G+T V+V H +   R V   +  +  G+I E+G 
Sbjct: 173  FDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 232

Query: 1230 HSELVSRPDGAYSRLL------QLQH 1249
              ++   P     +        +L+H
Sbjct: 233  PEQVFGNPQSPRLQQFLKGSLKKLEH 258

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score =  151 bits (384), Expect = 9e-42
 Identities = 67/251 (26%), Positives = 112/251 (44%), Gaps = 38/251 (15%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +   ++   Y       + +  S+   AG  ++++G SGSGKST +  I     P+ G +
Sbjct: 3   LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59

Query: 425 LLDNVDIKTL-------------QLRWLRDQIGLVNQEPALFAT-TILENILYG------ 464
           +++  +I  +             QLR LR ++ +V Q   L++  T+LEN++        
Sbjct: 60  IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119

Query: 465 --KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP 522
             K +A    ++  A            P             LSGGQ+QR++IARA+   P
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPV-----------HLSGGQQQRVSIARALAMEP 168

Query: 523 KILLLDEATSALDAG-SESIVQEALDRLMVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVV 580
            +LL DE TSALD      +++        G+T VVV H +   R+V   V  + QG++ 
Sbjct: 169 DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228

Query: 581 ETGTHEELIAK 591
           E G  E++   
Sbjct: 229 EEGDPEQVFGN 239

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score =  156 bits (396), Expect = 1e-43
 Identities = 55/239 (23%), Positives = 105/239 (43%), Gaps = 28/239 (11%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            ++L+ V  +             +  +RAG+   LVG +G+GKS+++A +        G +
Sbjct: 4    MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPAL-FAASIFDNIAYGKEGATEAEVVEAARAANVH 1128
               G+ +   +   L L    + Q+    FA  ++  +   +   T  E++     A   
Sbjct: 56   QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA--- 112

Query: 1129 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK-------NPAILLLDEATSALDA 1181
                    A    +G    QLSGG+ QR+ +A  VL+          +LLLDE  ++LD 
Sbjct: 113  -------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165

Query: 1182 ESECVLQEALERLM-RGRTTVLVAHRLS-TIRGVDCIGVVQDGRIVEQGSHSELVSRPD 1238
              +  L + L  L  +G   V+ +H L+ T+R      +++ G+++  G   E+++ P+
Sbjct: 166  AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 224

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score =  153 bits (389), Expect = 1e-42
 Identities = 51/237 (21%), Positives = 104/237 (43%), Gaps = 28/237 (11%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           ++ ++V  S             S    AG+ + +VG +G+GKST+++ +        G +
Sbjct: 4   MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPAL-FATTILENILYGKPEATMAEVEAAASAANAH 483
                 ++      L      ++Q+    FAT +   +   + + T  E+    + A   
Sbjct: 56  QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA--- 112

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK-------NPKILLLDEATSALDA 536
                       ++G    QLSGG+ QR+ +A  +L+         ++LLLDE  ++LD 
Sbjct: 113 -------LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165

Query: 537 GSESIVQEALDRLMV-GRTTVVVAHRLS-TIRNVDTVAVIQQGQVVETGTHEELIAK 591
             +S + + L  L   G   V+ +H L+ T+R+     +++ G+++ +G  EE++  
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score =  140 bits (354), Expect = 6e-38
 Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 16/242 (6%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            + L  V   +    +V   ++ +L ++ G+   L+G SG GK++ + +I    +P+ G++
Sbjct: 4    VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60

Query: 1070 MIDGKDIRRLNLKSLR----LKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARA 1124
             I  K +               I +V Q  AL+   +++DNIA+  +           R 
Sbjct: 61   YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120

Query: 1125 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 1184
              V   +       + P      +LSGGQ+QR+A+ RA+++ P + L+DE  S LDA+  
Sbjct: 121  REVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175

Query: 1185 CVLQEALERL--MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
              ++  L++L    G TT+ V H       + D I V+  G + + GS  E+  +P   +
Sbjct: 176  VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235

Query: 1242 SR 1243
              
Sbjct: 236  VA 237

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score =  134 bits (339), Expect = 5e-36
 Identities = 58/236 (24%), Positives = 112/236 (47%), Gaps = 18/236 (7%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +   +V   +    +V   R+ S+    G+ + ++G SG GK+T + +I    +P+ G +
Sbjct: 4   VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60

Query: 425 LLDNVDIKTLQ----LRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASA 479
            + +  +   +    +      I +V Q  AL+   T+ +NI +      +   E     
Sbjct: 61  YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120

Query: 480 ANAHSFITLLPNGYSTQVGERGV-QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGS 538
                 + L      T++  R   +LSGGQ+QR+A+ RA+++ P++ L+DE  S LDA  
Sbjct: 121 REVAELLGL------TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174

Query: 539 ESIVQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 591
              ++  L +L   +G TT+ V H       + D +AV+ +G + + G+ +E+  K
Sbjct: 175 RVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  139 bits (351), Expect = 1e-37
 Identities = 72/238 (30%), Positives = 114/238 (47%), Gaps = 14/238 (5%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            ++L++V  A+    +VVV KD NL I  G+    VG SG GKS+++ +I      T+G +
Sbjct: 1    VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVH 1128
             I  K +   +       +G+V Q  AL+   S+ +N+++G + A   + V   R   V 
Sbjct: 58   FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115

Query: 1129 GFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQ 1188
              +  L +            LSGGQ+QR+AI R ++  P++ LLDE  S LDA     ++
Sbjct: 116  EVLQ-LAHLLDRKPK----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170

Query: 1189 EALERL--MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSR 1243
              + RL    GRT + V H       + D I V+  GR+ + G   EL   P   +  
Sbjct: 171  IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 228

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  133 bits (337), Expect = 8e-36
 Identities = 60/231 (25%), Positives = 106/231 (45%), Gaps = 14/231 (6%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           ++ +NVT ++    +V++ +D ++    G+ V  VG SG GKST++ +I       +G +
Sbjct: 1   VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALF-ATTILENILYGKPEATMAEVEAAASAANAH 483
            +    +           +G+V Q  AL+   ++ EN+ +G   A   +           
Sbjct: 58  FIGEKRMN--DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
             + L     +  +  +   LSGGQ+QR+AI R ++  P + LLDE  S LDA     ++
Sbjct: 116 EVLQL-----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170

Query: 544 EALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 591
             + RL   +GRT + V H       + D + V+  G+V + G   EL   
Sbjct: 171 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  136 bits (344), Expect = 2e-36
 Identities = 55/247 (22%), Positives = 105/247 (42%), Gaps = 29/247 (11%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +   ++   +    +       ++ +  G    ++G +GSGKS++I +I  F     G+V
Sbjct: 5    LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61

Query: 1070 MIDGKDIRRLNLKSL-RLKIGLVQQEPALFAA-SIFDNIAYG---------------KEG 1112
              + KDI       L    I    Q P      ++ +N+  G               K  
Sbjct: 62   YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121

Query: 1113 ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLL 1172
              E E+VE  +A  +  F+  L + Y    G    +LSGGQ + + I RA++ NP ++++
Sbjct: 122  PKEEEMVE--KAFKILEFLK-LSHLYDRKAG----ELSGGQMKLVEIGRALMTNPKMIVM 174

Query: 1173 DEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSH 1230
            DE  + +       +   +  L  +G T +++ HRL  +    D + V+ +G+I+ +G  
Sbjct: 175  DEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 234

Query: 1231 SELVSRP 1237
             E +   
Sbjct: 235  EEEIKNV 241

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  134 bits (338), Expect = 1e-35
 Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 15/239 (6%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +  +N+   +    +       SI    G    ++G +GSGKST++++I  F   + G V
Sbjct: 5   LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61

Query: 425 LLDNVDIKTLQLRWL-RDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEA------- 475
             +N DI   +   L    I    Q P      T+LEN+L G+     + + +       
Sbjct: 62  YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121

Query: 476 -AASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL 534
                    +F  L     S     +  +LSGGQ + + I RA++ NPK++++DE  + +
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181

Query: 535 DAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 591
             G    +   +  L   G T +++ HRL  + N  D + V+  GQ++  G  EE I  
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score =  132 bits (333), Expect = 3e-35
 Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 12/247 (4%)

Query: 363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG 422
           G +  K++      +    I +  S     G+   ++G +G+GK+T + +I     P++G
Sbjct: 1   GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57

Query: 423 HVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAAN 481
            V +   ++   +   +R  I  + +E   +     +E + +       +  E       
Sbjct: 58  IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116

Query: 482 AHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESI 541
           A     L       ++ +R    S G  +++ IARA++ NP++ +LDE TS LD  +   
Sbjct: 117 ATEIAGLGE-----KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171

Query: 542 VQEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAGAYASLI 599
           V++ L +    G T +V +H +  +  + D +A+I  G +VETGT EEL  +  A     
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEE 231

Query: 600 RFQEMVR 606
            F+E+V+
Sbjct: 232 VFEEVVK 238

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score =  130 bits (328), Expect = 2e-34
 Identities = 50/237 (21%), Positives = 101/237 (42%), Gaps = 12/237 (5%)

Query: 1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG 1067
            G + ++ +           + K  +  I  G+   L+G +G+GK++ + +I     P++G
Sbjct: 1    GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57

Query: 1068 KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAAN 1126
             V + GK++       +R  I  + +E   +      + + +       +          
Sbjct: 58   IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116

Query: 1127 VHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECV 1186
                   L    K  V       S G  +++ IARA++ NP + +LDE TS LD  +   
Sbjct: 117  ATEIA-GLGEKIKDRVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171

Query: 1187 LQEALERLMR-GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
            +++ L++  + G T ++ +H +  +  + D I ++ +G IVE G+  EL  R     
Sbjct: 172  VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 228

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score =  132 bits (333), Expect = 4e-35
 Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 12/230 (5%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E +++   Y     +   +   +  P G+ V ++G +G+GK+T +S I        G +
Sbjct: 7   LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63

Query: 425 LLDNVDIKTL-QLRWLRDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANA 482
           + +  DI         R  I LV +   +F   T+ EN++ G       E          
Sbjct: 64  IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEW-- 121

Query: 483 HSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIV 542
              I  L      ++ + G  LSGG++Q +AI RA++  PK+L++DE +  L     S V
Sbjct: 122 ---IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178

Query: 543 QEALDRLM-VGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIA 590
            E + ++   G T ++V         V     V++ GQ+V  G   EL+ 
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score =  131 bits (332), Expect = 4e-35
 Identities = 56/233 (24%), Positives = 108/233 (46%), Gaps = 12/233 (5%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +E++ +   Y     +   K  +L++  GQ   L+GA+G+GK++ ++ I        GK+
Sbjct: 7    LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63

Query: 1070 MIDGKDIRRLNLKSLRLK-IGLVQQEPALFA-ASIFDNIAYGKEGATEAEVVEAARAANV 1127
            + +G+DI       +    I LV +   +F   ++++N+  G     + E ++      +
Sbjct: 64   IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKR-DLEWI 122

Query: 1128 HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL 1187
                  L    K   G     LSGG++Q +AI RA++  P +L++DE +  L       +
Sbjct: 123  FSLFPRLKERLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178

Query: 1188 QEALERLMR-GRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPD 1238
             E ++++ + G T +LV         V     V++ G+IV +G  SEL+    
Sbjct: 179  FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEM 231

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  130 bits (328), Expect = 5e-35
 Identities = 39/202 (19%), Positives = 90/202 (44%), Gaps = 26/202 (12%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            +E+R +   Y    D  V +   + I  G      G +G GK++++  I  +  P  G++
Sbjct: 3    LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYGKE----GATEAEVVEAARA 1124
            + +G  I ++     + KI  + +E  +    S+ D +            + E+++A  +
Sbjct: 59   IYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113

Query: 1125 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 1184
              V                ++  +LS G  +R+ +A  +L N  I +LD+   A+D +S+
Sbjct: 114  VEVLDL------------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161

Query: 1185 CVLQEALERLMRGRTTVLVAHR 1206
              + +++  +++ +  V+++ R
Sbjct: 162  HKVLKSILEILKEKGIVIISSR 183

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  130 bits (327), Expect = 7e-35
 Identities = 36/217 (16%), Positives = 89/217 (41%), Gaps = 27/217 (12%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           +E ++++  Y    D  +    ++    G  V   G +G GK+T++  I  +  P  G +
Sbjct: 3   LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALFA-TTILENILYG----KPEATMAEVEAAASA 479
           + + V I       ++ +I  + +E  +    ++ + +         +    E+  A  +
Sbjct: 59  IYNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113

Query: 480 ANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSE 539
                              ++  +LS G  +R+ +A  +L N +I +LD+   A+D  S+
Sbjct: 114 VEVLDL------------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161

Query: 540 SIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ 576
             V +++  ++  +  V+++ R   +   D    + +
Sbjct: 162 HKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  129 bits (325), Expect = 4e-34
 Identities = 64/242 (26%), Positives = 117/242 (48%), Gaps = 13/242 (5%)

Query: 1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068
             I +++V   +  +  VV   + N+ I  G+   ++G SG+GK++ + +I     P+ G+
Sbjct: 3    RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61

Query: 1069 VMIDGKDIRRLNLKSLRL---KIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARA 1124
            +  D + +       +     KIG+V Q  AL+   + F+NIA+       ++     R 
Sbjct: 62   LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121

Query: 1125 ANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESE 1184
              V   +         P      +LSG Q+QR+A+ARA++K+P++LLLDE  S LDA   
Sbjct: 122  EEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176

Query: 1185 CVLQEALERL--MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAY 1241
               +  ++ +    G T ++V+H  + I  + D +GV+  G++V+ G   +L   P    
Sbjct: 177  DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236

Query: 1242 SR 1243
              
Sbjct: 237  VA 238

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  121 bits (305), Expect = 2e-31
 Identities = 64/234 (27%), Positives = 112/234 (47%), Gaps = 13/234 (5%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           I  KNV+  +  +  V+   + +I    G+   ++G SG+GK+T + +I     P+ G +
Sbjct: 4   IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62

Query: 425 LLDNVDIKTLQLRWLRD---QIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAA 480
             D+  + +     +     +IG+V Q  AL+   T  ENI +      M++ E      
Sbjct: 63  YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122

Query: 481 NAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSES 540
                           +     +LSG Q+QR+A+ARA++K+P +LLLDE  S LDA    
Sbjct: 123 EV-----AKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177

Query: 541 IVQEALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 591
             +  +  +   +G T +VV+H  + I  + D V V+ +G++V+ G  E+L   
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  125 bits (316), Expect = 7e-33
 Identities = 73/225 (32%), Positives = 109/225 (48%), Gaps = 16/225 (7%)

Query: 1028 FKDFNLRI---RAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 1084
              +F L +          L+G +G+GKS  + LI     P  G+V ++G DI    L   
Sbjct: 11   LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPE 68

Query: 1085 RLKIGLVQQEPALFAA-SIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVG 1143
            R  IG V Q+ ALF   S++ NIAYG       E     R       ++ L +       
Sbjct: 69   RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK----- 123

Query: 1144 ERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERL--MRGRTTV 1201
                +LSGG++QR+A+ARA++  P +LLLDE  SA+D +++ VL E L  +        +
Sbjct: 124  --PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181

Query: 1202 LVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 1245
             V H L     + D + V+ +GRIVE+G   EL S  +G  +  L
Sbjct: 182  HVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score =  123 bits (309), Expect = 5e-32
 Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 16/220 (7%)

Query: 383 FRDFSI---FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL 439
             +F +   F        ++G +G+GKS  + LI     P+ G V L+  DI    L   
Sbjct: 11  LGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPE 68

Query: 440 RDQIGLVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVG 498
           R  IG V Q+ ALF   ++  NI YG       E +                 G +  + 
Sbjct: 69  RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREM-------AEKLGIAHLLD 121

Query: 499 ERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRL--MVGRTTV 556
            +  +LSGG++QR+A+ARA++  P++LLLDE  SA+D  ++ ++ E L  +        +
Sbjct: 122 RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPIL 181

Query: 557 VVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAKAGAY 595
            V H L     + D VAV+  G++VE G  +EL +     
Sbjct: 182 HVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGE 221

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score =  124 bits (313), Expect = 1e-32
 Identities = 67/241 (27%), Positives = 121/241 (50%), Gaps = 24/241 (9%)

Query: 1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069
            IE+  +   + +        + +L++ +G+   ++G +G+GK+  + LI  F+ P +G++
Sbjct: 2    IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57

Query: 1070 MIDGKDIRRLNLKSLRLKIGLVQQEPALFAA-SIFDNIAYG---KEGATEAEVVEAARAA 1125
            ++DGKD+   +L   +  I  V Q  +LF   ++  N+ +G   K+      V++ AR  
Sbjct: 58   LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115

Query: 1126 NVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESEC 1185
             +   +   P             LSGG++QR+A+ARA++ NP ILLLDE  SALD  ++ 
Sbjct: 116  KIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164

Query: 1186 VLQEALERL--MRGRTTVLVAHRLSTIRGV-DCIGVVQDGRIVEQGSHSELVSRPDGAYS 1242
              +E L  L      T + + H  +  R + D I VV DG++++ G   E+  +P     
Sbjct: 165  NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224

Query: 1243 R 1243
             
Sbjct: 225  A 225

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score =  119 bits (299), Expect = 8e-31
 Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 18/231 (7%)

Query: 365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV 424
           IE ++++  + +        + S+   +G+   ++G +G+GK+  + LI  F+ P++G +
Sbjct: 2   IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57

Query: 425 LLDNVDIKTLQLRWLRDQIGLVNQEPALF-ATTILENILYGKPEATMAEVEAAASAANAH 483
           LLD  D+  L     +  I  V Q  +LF    + +N+ +G     + + +     A   
Sbjct: 58  LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115

Query: 484 SFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQ 543
                        +    + LSGG++QR+A+ARA++ NPKILLLDE  SALD  ++   +
Sbjct: 116 --------KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167

Query: 544 EALDRL--MVGRTTVVVAHRLSTIRNV-DTVAVIQQGQVVETGTHEELIAK 591
           E L  L      T + + H  +  R + D +AV+  G++++ G  EE+  K
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 97.4 bits (241), Expect = 1e-23
 Identities = 22/190 (11%), Positives = 42/190 (22%), Gaps = 29/190 (15%)

Query: 396 VAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT 455
           + + G  G GK+T+V  I       A     + V     + R     I    ++    + 
Sbjct: 3   IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62

Query: 456 TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIA 515
                 L G                                V  +  +         A  
Sbjct: 63  FFTSKKLVGS-----------------------------YGVNVQYFEELAIPILERAYR 93

Query: 516 RAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQ 575
            A     K++++DE         +                V           V  +  + 
Sbjct: 94  EAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLP 153

Query: 576 QGQVVETGTH 585
              ++E    
Sbjct: 154 GAVLIELTPE 163

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 93.1 bits (230), Expect = 3e-22
 Identities = 18/189 (9%), Positives = 39/189 (20%), Gaps = 29/189 (15%)

Query: 1042 ALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAAS 1101
             + G  G GK++++  I       A     +         ++    I    ++    +  
Sbjct: 4    IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63

Query: 1102 IFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161
                   G  G                             V  +  +         A   
Sbjct: 64   FTSKKLVGSYG-----------------------------VNVQYFEELAIPILERAYRE 94

Query: 1162 AVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 1221
            A      ++++DE         +                V           V  I  +  
Sbjct: 95   AKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154

Query: 1222 GRIVEQGSH 1230
              ++E    
Sbjct: 155  AVLIELTPE 163

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 63.4 bits (152), Expect = 4e-11
 Identities = 38/324 (11%), Positives = 97/324 (29%), Gaps = 6/324 (1%)

Query: 675 RLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIY 734
           R L+   P         I  ++   I     +++   I+     +  + + K        
Sbjct: 4   RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63

Query: 735 IGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLA 794
             A    V+      +    + +  + ++   +   +  +          N+ +      
Sbjct: 64  GIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISR 123

Query: 795 TDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSL--LILGTYPLLVLANFAQQL 852
                 ++       ++   +  +     ++ +    V L    L  +P  +L  +    
Sbjct: 124 VINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFG 183

Query: 853 SLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSLT 912
            L+    + ++A A+      E V  I  V +F  ++     F  +     ++ L+ +  
Sbjct: 184 RLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRW 243

Query: 913 AGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPE 972
               F            +++  G +L   G  T   +      L +    +   V+    
Sbjct: 244 NAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTT 303

Query: 973 IIRGGESVGSVFSTLDRSTRIDPD 996
           + +   S+  VF  +D     D D
Sbjct: 304 LTQSFASMDRVFQLIDE----DYD 323

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 57.6 bits (137), Expect = 3e-09
 Identities = 40/320 (12%), Positives = 97/320 (30%), Gaps = 4/320 (1%)

Query: 29  LFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGF--GKNQTDIHKMTHEVCKY 86
              F   Y +  +    +  +I      +  LL    ++G       T   K+ H     
Sbjct: 5   YLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAI 63

Query: 87  ALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVF 146
            +      ++     +       +T  + +  +RKK    +      F+  +     I  
Sbjct: 64  GIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISR 123

Query: 147 SVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYA 206
            ++      +D I   + N      T +  L + F    +L L ++ + P       ++ 
Sbjct: 124 VINDVEQ-TKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFF 182

Query: 207 YTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGM 266
             L  LT +  ++ A       + +  +  V S+  E     ++     N L    K   
Sbjct: 183 GRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTR 242

Query: 267 AKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLG 326
                      +  +   +V         +G    G     +    +    L +  ++  
Sbjct: 243 WNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFT 302

Query: 327 AFSKGKAAGYKLMEIIKQKP 346
             ++  A+  ++ ++I +  
Sbjct: 303 TLTQSFASMDRVFQLIDEDY 322

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 56.9 bits (135), Expect = 6e-09
 Identities = 50/318 (15%), Positives = 119/318 (37%), Gaps = 7/318 (2%)

Query: 673 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMI-EVFYYRNPASMERKTKEFV 731
           F RL    AP     I+  I  +L+         ++  ++ + F   + + +        
Sbjct: 4   FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLW----MP 59

Query: 732 FIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAA 791
            + IG  +   +   I  Y  S +   +   +RR +   ++   V +FD++   + L   
Sbjct: 60  LVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRI 119

Query: 792 RLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEWRVSLLILGTYPLLVLANFAQQ 851
               D+  V S+ +  +  +++   S++  FI+ F   W++S++++   P++ +A     
Sbjct: 120 T--YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 177

Query: 852 LSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRSL 911
              +  + +      + +  A + +   + V  F  Q      F       + Q ++   
Sbjct: 178 KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 237

Query: 912 TAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAP 971
            + I   I Q     + A +L+           T   +  VF  ++     +    ++  
Sbjct: 238 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNA 297

Query: 972 EIIRGGESVGSVFSTLDR 989
           +  RG  +  ++F+ LD 
Sbjct: 298 QFQRGMAACQTLFAILDS 315

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 25/173 (14%), Positives = 50/173 (28%), Gaps = 6/173 (3%)

Query: 394 KTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALF 453
           + V + G  G GK+T++         +   V     +      R +   +  ++      
Sbjct: 2   RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61

Query: 454 ATTILENILYGKPEATMAEVEAAASAANAHSFIT-----LLPNGYSTQVGERGVQLSGGQ 508
           +   LE     +       V    S       +          G    V +   ++    
Sbjct: 62  SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121

Query: 509 KQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHR 561
           +  I   R  L  P  ++L            ++V+E  +R  V    V   +R
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKG-KPLALVEEIRNRKDVKVFNVTKENR 173

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 19/165 (11%), Positives = 44/165 (26%), Gaps = 7/165 (4%)

Query: 1043 LVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASI 1102
            L G  G GK+++I         +   V     +  R   + +   +  +       +   
Sbjct: 6    LTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVG 65

Query: 1103 FDNIAYGKEGATEAEVVEAARAANV-----HGFVSALPNAYKTPVGERGVQLSGGQKQRI 1157
             +     +E      VV+      +          +     +  V +   ++    +  I
Sbjct: 66   LEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI 125

Query: 1158 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVL 1202
               R  L  P  ++L              L E +      +   +
Sbjct: 126  QAVRQTLSTPGTIILGTIPVPKGKPLA--LVEEIRNRKDVKVFNV 168

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 37.2 bits (85), Expect = 0.004
 Identities = 26/175 (14%), Positives = 52/175 (29%), Gaps = 18/175 (10%)

Query: 392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPA 451
            G  + + G  GSGKST+   +         H   D++    ++   +   +   +Q+  
Sbjct: 3   GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL-WGYIKHGRIDPWLPQSHQQNR 61

Query: 452 LFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQ-----------VGER 500
           +      +       E     ++         +F  L    +                +R
Sbjct: 62  MIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDR 121

Query: 501 GV--QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGR 553
           G            +    A L   +  +L    S  D   +  +Q A++ L  GR
Sbjct: 122 GGDSLSDPLVVADLHSQFADLGAFEHHVLP--VSGKDT--DQALQSAINALQSGR 172

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1252
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d3b60a2	319	Multidrug resistance ABC transporter MsbA, N-termi	100.0
d2hyda2	323	Putative multidrug export ATP-binding/permease pro	100.0
d3b60a2	319	Multidrug resistance ABC transporter MsbA, N-termi	99.95
d2hyda2	323	Putative multidrug export ATP-binding/permease pro	99.94
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.76
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.71
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.58
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.44
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.34
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.25
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.24
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.12
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.0
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.93
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.87
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.8
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.83
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.81
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.81
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.74
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.68
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.64
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.61
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.4
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.35
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.31
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.23
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.15
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.15
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.1
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.08
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.07
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.07
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.89
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.89
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.84
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.82
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.74
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	95.7
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.69
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.61
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	95.59
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.59
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.51
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.46
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.43
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.38
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.22
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	95.22
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	95.21
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.1
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.08
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.07
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	95.01
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.0
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	94.98
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	94.98
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	94.94
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	94.88
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	94.86
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	94.85
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	94.85
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	94.74
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.72
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	94.72
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	94.68
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	94.48
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	94.47
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	94.46
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.37
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.37
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	94.37
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	94.36
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	94.34
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	94.33
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.33
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	94.33
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.32
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	94.27
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.14
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.12
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.09
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.0
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	93.92
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	93.88
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.86
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	93.84
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	93.8
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	93.8
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	93.73
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	93.71
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	93.66
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	93.65
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	93.65
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	93.65
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	93.63
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.62
d1j8yf2	211	GTPase domain of the signal sequence recognition p	93.6
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	93.6
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	93.56
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	93.54
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	93.53
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	93.47
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	93.46
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	93.4
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	93.38
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	93.35
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	93.35
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	93.32
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.2
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	93.18
d1vmaa2	213	GTPase domain of the signal recognition particle r	93.15
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	93.1
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	93.08
d1nrjb_	209	Signal recognition particle receptor beta-subunit	93.05
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.03
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	92.99
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.89
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	92.87
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	92.84
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	92.79
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	92.74
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	92.73
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.7
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	92.67
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	92.64
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	92.64
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	92.62
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	92.58
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	92.56
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	92.51
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	92.5
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	92.47
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	92.46
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	92.41
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	92.38
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.38
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	92.36
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	92.34
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	92.34
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	92.3
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	92.3
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	92.27
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	92.22
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	92.22
d1okkd2	207	GTPase domain of the signal recognition particle r	92.21
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	92.18
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	92.18
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	92.11
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	92.1
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	92.09
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	92.08
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	92.07
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	92.05
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	92.03
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	91.88
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.86
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	91.84
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	91.81
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	91.77
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	91.77
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	91.76
d1nrjb_	209	Signal recognition particle receptor beta-subunit	91.75
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	91.74
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	91.73
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	91.71
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	91.67
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	91.66
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	91.66
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	91.65
d1j8yf2	211	GTPase domain of the signal sequence recognition p	91.63
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	91.57
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	91.5
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	91.49
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	91.44
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	91.4
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	91.4
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	91.36
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	91.34
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	91.32
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	91.27
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	91.26
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	91.22
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	91.19
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	91.19
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	91.15
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	91.15
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	91.14
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	91.09
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	91.05
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.05
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	90.97
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	90.92
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	90.91
d2fh5b1	207	Signal recognition particle receptor beta-subunit	90.9
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	90.9
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	90.88
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	90.87
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	90.84
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	90.82
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	90.7
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	90.68
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	90.65
d1okkd2	207	GTPase domain of the signal recognition particle r	90.65
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	90.51
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	90.49
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	90.4
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	90.39
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	90.38
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	90.36
d1xpua3	289	Transcription termination factor Rho, ATPase domai	90.33
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	90.3
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	90.28
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	90.28
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	90.23
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	90.17
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	90.07
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	89.97
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	89.84
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	89.83
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	89.77
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	89.74
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	89.72
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	89.68
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	89.63
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	89.55
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	89.55
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	89.51
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	89.47
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	89.41
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	89.39
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	89.34
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	89.34
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	89.19
d2fh5b1	207	Signal recognition particle receptor beta-subunit	89.14
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	89.11
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	89.07
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	89.06
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	89.03
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	89.01
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	88.91
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	88.91
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	88.9
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	88.89
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	88.88
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	88.83
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	88.81
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	88.77
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	88.76
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	88.73
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	88.73
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	88.7
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	88.7
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	88.67
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	88.65
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	88.6
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	88.58
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	88.57
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	88.56
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	88.51
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	88.47
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	88.43
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	88.37
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	88.34
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	88.34
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	88.34
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	88.21
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	88.19
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	88.17
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	88.13
d2qy9a2	211	GTPase domain of the signal recognition particle r	88.12
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	88.1
d1ls1a2	207	GTPase domain of the signal sequence recognition p	88.01
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	87.96
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	87.93
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	87.89
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	87.89
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	87.83
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	87.83
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	87.8
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	87.79
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	87.78
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	87.74
d2qy9a2	211	GTPase domain of the signal recognition particle r	87.72
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	87.7
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	87.7
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	87.67
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	87.65
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	87.54
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	87.48
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	87.44
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	87.42
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	87.35
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	87.32
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	87.24
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	87.09
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	87.01
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	86.98
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	86.95
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	86.94
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	86.92
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	86.86
d1vmaa2	213	GTPase domain of the signal recognition particle r	86.82
d1xpua3	289	Transcription termination factor Rho, ATPase domai	86.81
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	86.81
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	86.8
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	86.8
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	86.75
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	86.74
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	86.66
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	86.59
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	86.59
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	86.4
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	86.4
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	86.38
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	86.32
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	86.31
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	86.3
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	86.28
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	86.28
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	86.27
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	86.19
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	86.18
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	86.14
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	86.13
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	86.12
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	86.07
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	86.07
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	86.05
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	85.99
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	85.86
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	85.72
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	85.71
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	85.69
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	85.68
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	85.67
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	85.63
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	85.48
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	85.43
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	85.35
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	85.33
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	85.32
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	85.32
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	85.3
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	85.27
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	85.1
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	84.91
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	84.81
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	84.74
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	84.7
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	84.64
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	84.62
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	84.6
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	84.59
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	84.54
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	84.52
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	84.31
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	84.17
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	84.1
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	84.08
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	83.87
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	83.7
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	83.69
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	83.62
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	83.54
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	83.53
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	83.42
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	83.41
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	83.33
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	83.31
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	83.3
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	83.29
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	83.26
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	83.16
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	83.13
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	83.08
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	83.04
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	82.97
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	82.97
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	82.81
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	82.8
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	82.67
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	82.62
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	82.56
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	82.48
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	82.45
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	82.41
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	82.38
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	82.29
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	81.98
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	81.94
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	81.85
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	81.79
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	81.75
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	81.55
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	81.5
d1ls1a2	207	GTPase domain of the signal sequence recognition p	81.44
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	81.38
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	81.1
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	81.04
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	80.78
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	80.71
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	80.69
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	80.56

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=0  Score=527.26  Aligned_cols=245  Identities=53%  Similarity=0.852  Sum_probs=236.0

Q ss_pred             CCCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHH
Q ss_conf             87766519999589988998884420002699837959999849999868899998523779975699899316899978
Q 000856         1003 VETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLK 1082 (1252)
Q Consensus      1003 ~~~~~g~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~ 1082 (1252)
                      ....+|+|+|+||+|+|++. ..++|+|+||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+++++.+
T Consensus        10 l~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~   88 (255)
T d2hyda1          10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG   88 (255)
T ss_dssp             CCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHH
T ss_pred             CCCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHH
T ss_conf             77778879999889995999-97606443899839989999889998099999999712786300015399875307888


Q ss_pred             HHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             87322088804665575558888522999999999999999807212586089867885689999889259999999999
Q 000856         1083 SLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1083 ~lR~~i~~V~Q~~~LF~gTIreNL~~g~~~~sd~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARA 1162 (1252)
                      .+|++++||||+|.+|++||+|||.+|.+..+++++++|++.+++++++..+|+||||.++++|.+||||||||+|||||
T Consensus        89 ~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARa  168 (255)
T d2hyda1          89 SLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI  168 (255)
T ss_dssp             HHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred             HHHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             86341456510156899879999851586799999999999969799997362420103338889849999999999999


Q ss_pred             HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHCCCCCHHH
Q ss_conf             71399989982667899989799999999987189759998149236530698999949779881492466209985359
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYS 1242 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~~~~TvI~IsHrl~ti~~~D~I~vl~~G~ive~G~~~eLl~~~~g~y~ 1242 (1252)
                      |+++|+|||||||||+||++++..+++.|.++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.|+
T Consensus       169 l~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~  247 (255)
T d2hyda1         169 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYE  247 (255)
T ss_dssp             HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHH
T ss_pred             HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHH
T ss_conf             85599899983765447977999999999987538889999689999985999999989999998899999868-84999


Q ss_pred             HHHHHHH
Q ss_conf             9997742
Q 000856         1243 RLLQLQH 1249 (1252)
Q Consensus      1243 ~l~~~q~ 1249 (1252)
                      +||+.|+
T Consensus       248 ~l~~~Q~  254 (255)
T d2hyda1         248 HLYSIQN  254 (255)
T ss_dssp             HHHTTTT
T ss_pred             HHHHHCC
T ss_conf             9999747

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=521.99  Aligned_cols=241  Identities=47%  Similarity=0.768  Sum_probs=233.5

Q ss_pred             CEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf             19999589988998884420002699837959999849999868899998523779975699899316899978873220
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      +|+|+||+|+|+.. ..++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.+||+|++.++.+.+|+++
T Consensus         1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i   79 (241)
T d2pmka1           1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV   79 (241)
T ss_dssp             EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred             CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf             92999999990899-96037424899849999999999999899999999735788888999999994400246553528


Q ss_pred             EEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             88804665575558888522999999999999999807212586089867885689999889259999999999713999
Q 000856         1089 GLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 1168 (1252)
Q Consensus      1089 ~~V~Q~~~LF~gTIreNL~~g~~~~sd~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARALl~~p~ 1168 (1252)
                      +||||+|++|++||+|||.++.+..++++++.+++.+++.+++..+|+|++|.++++|.+||||||||+||||||+++|+
T Consensus        80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~  159 (241)
T d2pmka1          80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK  159 (241)
T ss_dssp             EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             89824465578400035223575543888999999975578887632013443278788669889898754434441651


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHH
Q ss_conf             89982667899989799999999987189759998149236530698999949779881492466209985359999774
Q 000856         1169 ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248 (1252)
Q Consensus      1169 ILiLDEpTSaLD~~te~~i~~~l~~~~~~~TvI~IsHrl~ti~~~D~I~vl~~G~ive~G~~~eLl~~~~g~y~~l~~~q 1248 (1252)
                      |||||||||+||+.+++.|++.+.++.+++|+|+||||++.++.||+|+||++|+|+|+|+|++|++++++.|++||+.|
T Consensus       160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q  239 (241)
T d2pmka1         160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ  239 (241)
T ss_dssp             EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
T ss_conf             35564776555989999999999998589989999788999984999999989999998899999829987899999981


Q ss_pred             HH
Q ss_conf             20
Q 000856         1249 HH 1250 (1252)
Q Consensus      1249 ~~ 1250 (1252)
                      .+
T Consensus       240 ~d  241 (241)
T d2pmka1         240 SD  241 (241)
T ss_dssp             CC
T ss_pred             CC
T ss_conf             39

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=0  Score=513.58  Aligned_cols=244  Identities=49%  Similarity=0.801  Sum_probs=233.6

Q ss_pred             CCCCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH
Q ss_conf             77665199995899889988844200026998379599998499998688999985237799756998993168999788
Q 000856         1004 ETIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS 1083 (1252)
Q Consensus      1004 ~~~~g~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~ 1083 (1252)
                      ....|+|+|+||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||.|+++++.+.
T Consensus         8 ~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~   86 (253)
T d3b60a1           8 DRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS   86 (253)
T ss_dssp             SCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH
T ss_pred             CCCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHH
T ss_conf             7783079999889992999-976353328998599999999999985999999986216888468987880121110665


Q ss_pred             HHCCCEEECCCCCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             732208880466557555888852299-9999999999999807212586089867885689999889259999999999
Q 000856         1084 LRLKIGLVQQEPALFAASIFDNIAYGK-EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1084 lR~~i~~V~Q~~~LF~gTIreNL~~g~-~~~sd~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARA 1162 (1252)
                      +|++++||||+|.+|++|+++|+.++. +..++++++++++.++++++++.+|+||+|.++++|.+||||||||+|||||
T Consensus        87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa  166 (253)
T d3b60a1          87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA  166 (253)
T ss_dssp             HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred             HHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             42068799502544786202433205722089999999999981799997355441014348889849999999999999


Q ss_pred             HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHCCCCCHHH
Q ss_conf             71399989982667899989799999999987189759998149236530698999949779881492466209985359
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYS 1242 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~~~~TvI~IsHrl~ti~~~D~I~vl~~G~ive~G~~~eLl~~~~g~y~ 1242 (1252)
                      |+++|+|||||||||+||++++..|++.|+++.+++|+|+||||++.+..||+|+||++|+|+|+|+|+||+++ ++.|+
T Consensus       167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~  245 (253)
T d3b60a1         167 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYA  245 (253)
T ss_dssp             HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHH
T ss_pred             HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHHH
T ss_conf             95499889951644458988999999999875227889999887999985999999989999998899999868-93999


Q ss_pred             HHHHHHH
Q ss_conf             9997742
Q 000856         1243 RLLQLQH 1249 (1252)
Q Consensus      1243 ~l~~~q~ 1249 (1252)
                      +||+.|-
T Consensus       246 ~l~~~Q~  252 (253)
T d3b60a1         246 QLHKMQF  252 (253)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHCC
T ss_conf             9999725

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=505.36  Aligned_cols=241  Identities=40%  Similarity=0.721  Sum_probs=230.0

Q ss_pred             CCCCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH
Q ss_conf             76651999958998899888442000269983795999984999986889999852377997569989931689997887
Q 000856         1005 TIRGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL 1084 (1252)
Q Consensus      1005 ~~~g~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l 1084 (1252)
                      ..+|.|+|+||+|+||++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+.+
T Consensus         7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~   86 (251)
T d1jj7a_           7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL   86 (251)
T ss_dssp             CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred             CCCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHH
T ss_conf             65336999998998899999976744389984998999999999849999999861437876899889985311013788


Q ss_pred             HCCCEEECCCCCCCCCCHHHHHCCCC-CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             32208880466557555888852299-99999999999998072125860898678856899998892599999999997
Q 000856         1085 RLKIGLVQQEPALFAASIFDNIAYGK-EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 1163 (1252)
Q Consensus      1085 R~~i~~V~Q~~~LF~gTIreNL~~g~-~~~sd~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARAL 1163 (1252)
                      |++++||||+|++|++||+||+.++. +..+++++..+++.+++.+++..+|+|++|.++++|.+||||||||+||||||
T Consensus        87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal  166 (251)
T d1jj7a_          87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL  166 (251)
T ss_dssp             HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECC
T ss_conf             87765404565002763465545421013027889999999989999985612111367516766895470489986044


Q ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHCCCCCHH
Q ss_conf             139998998266789998979999999998718--975999814923653069899994977988149246620998535
Q 000856         1164 LKNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241 (1252)
Q Consensus      1164 l~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~~--~~TvI~IsHrl~ti~~~D~I~vl~~G~ive~G~~~eLl~~~~g~y 1241 (1252)
                      +++|+|+|||||||+||+.++..+++.|.+..+  ++|+|+||||++.+..||+|+||++|+|+|+|+|+||+++ ++.|
T Consensus       167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y  245 (251)
T d1jj7a_         167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY  245 (251)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CCHH
T ss_conf             568707871675765685368999999999765069899999597999985999999989999998899999859-7588


Q ss_pred             HHHHH
Q ss_conf             99997
Q 000856         1242 SRLLQ 1246 (1252)
Q Consensus      1242 ~~l~~ 1246 (1252)
                      ++||+
T Consensus       246 ~~l~~  250 (251)
T d1jj7a_         246 WAMVQ  250 (251)
T ss_dssp             HHHHC
T ss_pred             HHHHC
T ss_conf             99962

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=0  Score=503.75  Aligned_cols=238  Identities=44%  Similarity=0.753  Sum_probs=228.6

Q ss_pred             EEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCE
Q ss_conf             99995899889988844200026998379599998499998688999985237799756998993168999788732208
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++||+|+|++.  .++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||.|+++++.+.+|++|+
T Consensus         2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~   79 (242)
T d1mv5a_           2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG   79 (242)
T ss_dssp             EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred             EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf             7999889987999--84142258998599999999999997999999999960989877988998844246788874367


Q ss_pred             EECCCCCCCCCCHHHHHCCC-CCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             88046655755588885229-99999999999999807212586089867885689999889259999999999713999
Q 000856         1090 LVQQEPALFAASIFDNIAYG-KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPA 1168 (1252)
Q Consensus      1090 ~V~Q~~~LF~gTIreNL~~g-~~~~sd~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARALl~~p~ 1168 (1252)
                      ||||+|.+|++|++||+.++ .+..++++++++++.+++.+++..+|++++|.++++|.+||||||||+||||||+++|+
T Consensus        80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~  159 (242)
T d1mv5a_          80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK  159 (242)
T ss_dssp             EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred             EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             97566545785345430124455542356778999997555420374210152368789879999999999999852998


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHHHH
Q ss_conf             89982667899989799999999987189759998149236530698999949779881492466209985359999774
Q 000856         1169 ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQLQ 1248 (1252)
Q Consensus      1169 ILiLDEpTSaLD~~te~~i~~~l~~~~~~~TvI~IsHrl~ti~~~D~I~vl~~G~ive~G~~~eLl~~~~g~y~~l~~~q 1248 (1252)
                      |||||||||+||+.++..+++.|+++.+++|+|+||||++.+..||+|+||++|+|+++|+|+||+++ ++.|+++|+.|
T Consensus       160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q  238 (242)
T d1mv5a_         160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ  238 (242)
T ss_dssp             EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHC-CHHHHHHHHHH
T ss_conf             99965886556988999998878887179989999787999984999999989999999999999868-96999999998


Q ss_pred             HH
Q ss_conf             20
Q 000856         1249 HH 1250 (1252)
Q Consensus      1249 ~~ 1250 (1252)
                      ..
T Consensus       239 ~~  240 (242)
T d1mv5a_         239 LT  240 (242)
T ss_dssp             CC
T ss_pred             HH
T ss_conf             50

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=0  Score=480.01  Aligned_cols=244  Identities=56%  Similarity=0.837  Sum_probs=233.9

Q ss_pred             CCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH
Q ss_conf             88764089996889889999974301203886089899998589981899999995146799858988993166778898
Q 000856          359 DEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW  438 (1252)
Q Consensus       359 ~~~~~~i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~  438 (1252)
                      ...+|.|+|+||+|+|++. ..++|+|+||++++|+++||+|+||||||||+++|.|+++|++|+|.+||.|+++++..+
T Consensus        11 ~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~   89 (255)
T d2hyda1          11 EIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS   89 (255)
T ss_dssp             CCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred             CCCCCEEEEEEEEEEECCC-CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHH
T ss_conf             7778879999889995999-976064438998399899998899980999999997127863000153998753078888


Q ss_pred             HHHHCEEECCCCCCCHHCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             83201477367877611199997159999999999999999537998850999754412599998896899999999986
Q 000856          439 LRDQIGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM  518 (1252)
Q Consensus       439 ~~~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal  518 (1252)
                      +|++++||+|+|++|++||+|||+++.++.+++++.++++.+++++++..+|+|++|.++++|.+||||||||++||||+
T Consensus        90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal  169 (255)
T d2hyda1          90 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF  169 (255)
T ss_dssp             HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred             HHHEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf             63414565101568998799998515867999999999999697999973624201033388898499999999999998


Q ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHH
Q ss_conf             00998888717777999674999999999861897299981594201103979999598897834957897503213999
Q 000856          519 LKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASL  598 (1252)
Q Consensus       519 ~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~  598 (1252)
                      +++|+|+|||||||+||++++..+.+.+.++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++++.|+.+
T Consensus       170 ~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l  249 (255)
T d2hyda1         170 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHL  249 (255)
T ss_dssp             HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHH
T ss_pred             HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHHH
T ss_conf             55998999837654479779999999999875388899996899999859999999899999988999998688499999


Q ss_pred             HHHHH
Q ss_conf             99987
Q 000856          599 IRFQE  603 (1252)
Q Consensus       599 ~~~~~  603 (1252)
                      |..|.
T Consensus       250 ~~~Q~  254 (255)
T d2hyda1         250 YSIQN  254 (255)
T ss_dssp             HTTTT
T ss_pred             HHHCC
T ss_conf             99747

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=471.64  Aligned_cols=239  Identities=44%  Similarity=0.773  Sum_probs=229.6

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
Q ss_conf             08999688988999997430120388608989999858998189999999514679985898899316677889883201
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      +|+|+||+|+|++. ..++|+|+||++++|+++||+||||||||||+++|+|+++|++|+|.+||+|+..++..++|+++
T Consensus         1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i   79 (241)
T d2pmka1           1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV   79 (241)
T ss_dssp             EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred             CEEEEEEEEEECCC-CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEE
T ss_conf             92999999990899-96037424899849999999999999899999999735788888999999994400246553528


Q ss_pred             EEECCCCCCCHHCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             47736787761119999715999999999999999953799885099975441259999889689999999998600998
Q 000856          444 GLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK  523 (1252)
Q Consensus       444 ~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal~~~~~  523 (1252)
                      +||+|+|++|++||+|||.++.+..+++++..+++.+++.+++..+|+|++|.++++|.+||||||||++||||++++|+
T Consensus        80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~  159 (241)
T d2pmka1          80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK  159 (241)
T ss_dssp             EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             89824465578400035223575543888999999975578887632013443278788669889898754434441651


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHCCCEEEEEECCEEEEECCHHHHHHC-CCCHHHHHHHH
Q ss_conf             88871777799967499999999986189729998159420110397999959889783495789750-32139999998
Q 000856          524 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAK-AGAYASLIRFQ  602 (1252)
Q Consensus       524 ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~  602 (1252)
                      |+|||||||+||+.+++.+.+.++++.+++|+|+||||++.+..||+|++|++|+|++.|+|+|++++ ++.|+.+++.|
T Consensus       160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q  239 (241)
T d2pmka1         160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ  239 (241)
T ss_dssp             EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHH
T ss_conf             35564776555989999999999998589989999788999984999999989999998899999829987899999981


Q ss_pred             H
Q ss_conf             7
Q 000856          603 E  603 (1252)
Q Consensus       603 ~  603 (1252)
                      .
T Consensus       240 ~  240 (241)
T d2pmka1         240 S  240 (241)
T ss_dssp             C
T ss_pred             C
T ss_conf             3

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=0  Score=470.96  Aligned_cols=244  Identities=52%  Similarity=0.815  Sum_probs=232.9

Q ss_pred             CCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH
Q ss_conf             88764089996889889999974301203886089899998589981899999995146799858988993166778898
Q 000856          359 DEVNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW  438 (1252)
Q Consensus       359 ~~~~~~i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~  438 (1252)
                      +...|.|+|+||+|+|+++ +.++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.+||.++++++..+
T Consensus         8 ~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~   86 (253)
T d3b60a1           8 DRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS   86 (253)
T ss_dssp             SCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH
T ss_pred             CCCCEEEEEEEEEEEECCC-CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHH
T ss_conf             7783079999889992999-976353328998599999999999985999999986216888468987880121110665


Q ss_pred             HHHHCEEECCCCCCCHHCHHHHHHCCCC-CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             8320147736787761119999715999-999999999999953799885099975441259999889689999999998
Q 000856          439 LRDQIGLVNQEPALFATTILENILYGKP-EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA  517 (1252)
Q Consensus       439 ~~~~i~~v~Q~~~l~~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARa  517 (1252)
                      +|++++||+|+|++|++|+++|+.++.+ ..+++++.++++.+++++++..+|+|++|.++++|.+||||||||++||||
T Consensus        87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa  166 (253)
T d3b60a1          87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA  166 (253)
T ss_dssp             HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred             HHHEEEEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             42068799502544786202433205722089999999999981799997355441014348889849999999999999


Q ss_pred             HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf             60099888871777799967499999999986189729998159420110397999959889783495789750321399
Q 000856          518 MLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYAS  597 (1252)
Q Consensus       518 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~  597 (1252)
                      ++++|+|+|||||||+||+.++..+++.++++.+++|+|+||||++.+..||+|++|++|+|++.|+|+|++++++.|++
T Consensus       167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~  246 (253)
T d3b60a1         167 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQ  246 (253)
T ss_dssp             HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHH
T ss_pred             HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHH
T ss_conf             95499889951644458988999999999875227889999887999985999999989999998899999868939999


Q ss_pred             HHHHHH
Q ss_conf             999987
Q 000856          598 LIRFQE  603 (1252)
Q Consensus       598 ~~~~~~  603 (1252)
                      +|+.|.
T Consensus       247 l~~~Q~  252 (253)
T d3b60a1         247 LHKMQF  252 (253)
T ss_dssp             HHHHTC
T ss_pred             HHHHCC
T ss_conf             999725

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=463.45  Aligned_cols=240  Identities=41%  Similarity=0.743  Sum_probs=228.4

Q ss_pred             CCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHH
Q ss_conf             76408999688988999997430120388608989999858998189999999514679985898899316677889883
Q 000856          361 VNGNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR  440 (1252)
Q Consensus       361 ~~~~i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~  440 (1252)
                      ..|.|+|+||+|+|+++++..+|+|+||++++||++||+||||||||||+++|.|+++|++|+|.+||+|+++++..++|
T Consensus         8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r   87 (251)
T d1jj7a_           8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH   87 (251)
T ss_dssp             CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred             CCCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHH
T ss_conf             53369999989988999999767443899849989999999998499999998614378768998899853110137888


Q ss_pred             HHCEEECCCCCCCHHCHHHHHHCCC-CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             2014773678776111999971599-999999999999995379988509997544125999988968999999999860
Q 000856          441 DQIGLVNQEPALFATTILENILYGK-PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       441 ~~i~~v~Q~~~l~~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal~  519 (1252)
                      ++++||+|+|++|++||+||+.++. +....+++..+++.+++++++..+|+|+++.+++.|.+||||||||++||||++
T Consensus        88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~  167 (251)
T d1jj7a_          88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI  167 (251)
T ss_dssp             HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHCEEEEEEECCC
T ss_conf             77654045650027634655454210130278899999999899999856121113675167668954704899860445


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCCHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHH
Q ss_conf             09988887177779996749999999998618--9729998159420110397999959889783495789750321399
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYAS  597 (1252)
Q Consensus       520 ~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~  597 (1252)
                      ++|+|+|||||||+||+.++..+++.+.++.+  ++|+|+|||+++.+..||+|++|++|+|+++|+|+||+++++.|+.
T Consensus       168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~  247 (251)
T d1jj7a_         168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA  247 (251)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCHHHH
T ss_conf             68707871675765685368999999999765069899999597999985999999989999998899999859758899


Q ss_pred             HHH
Q ss_conf             999
Q 000856          598 LIR  600 (1252)
Q Consensus       598 ~~~  600 (1252)
                      +++
T Consensus       248 l~~  250 (251)
T d1jj7a_         248 MVQ  250 (251)
T ss_dssp             HHC
T ss_pred             HHC
T ss_conf             962

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=0  Score=460.61  Aligned_cols=236  Identities=47%  Similarity=0.727  Sum_probs=225.8

Q ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCE
Q ss_conf             89996889889999974301203886089899998589981899999995146799858988993166778898832014
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      |+++||+|+|++.  .++|+|+||++++|+++||+||||||||||+++|+|+++|++|+|.+||.++++++..++|++++
T Consensus         2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~   79 (242)
T d1mv5a_           2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG   79 (242)
T ss_dssp             EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred             EEEEEEEEECCCC--CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEE
T ss_conf             7999889987999--84142258998599999999999997999999999960989877988998844246788874367


Q ss_pred             EECCCCCCCHHCHHHHHHCCC-CCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             773678776111999971599-9999999999999953799885099975441259999889689999999998600998
Q 000856          445 LVNQEPALFATTILENILYGK-PEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK  523 (1252)
Q Consensus       445 ~v~Q~~~l~~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal~~~~~  523 (1252)
                      ||+|+|++|++|++||+.++. +..++++++.+++.+++.+++..+|+|++|.++++|.+||||||||++||||++++|+
T Consensus        80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~  159 (242)
T d1mv5a_          80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK  159 (242)
T ss_dssp             EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred             EECCCCCCCCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             97566545785345430124455542356778999997555420374210152368789879999999999999852998


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHH
Q ss_conf             8887177779996749999999998618972999815942011039799995988978349578975032139999998
Q 000856          524 ILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLIRFQ  602 (1252)
Q Consensus       524 ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~  602 (1252)
                      |+|||||||+||+.++..+++.++++.+++|+|+|||+++.+..||+|++|++|+|++.|+|+||++.++.|++++..|
T Consensus       160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~Q  238 (242)
T d1mv5a_         160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ  238 (242)
T ss_dssp             EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCEEEEEECCEEEEECCHHHHHHCCHHHHHHHHHH
T ss_conf             9996588655698899999887888717998999978799998499999998999999999999986896999999998

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=0  Score=419.15  Aligned_cols=220  Identities=30%  Similarity=0.446  Sum_probs=199.9

Q ss_pred             CCCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHC
Q ss_conf             65199995899889988844200026998379599998499998688999985237799756998993168999788732
Q 000856         1007 RGEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL 1086 (1252)
Q Consensus      1007 ~g~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~ 1086 (1252)
                      .+.|+|+|++|.+     .|+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||             
T Consensus        36 ~~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------   97 (281)
T d1r0wa_          36 ENNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------   97 (281)
T ss_dssp             ----CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------
T ss_pred             CCCEEEEECCCCC-----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------
T ss_conf             8967999769899-----7677375999859999999989998299999999579747882899999-------------


Q ss_pred             CCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             20888046655755588885229999999999999998072125860898678856899998892599999999997139
Q 000856         1087 KIGLVQQEPALFAASIFDNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKN 1166 (1252)
Q Consensus      1087 ~i~~V~Q~~~LF~gTIreNL~~g~~~~sd~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARALl~~ 1166 (1252)
                      +++||||++.+|++|++||+.++. ...+.+.+.+++.+++.+++..+|+++++.++++|.+||||||||+||||||+++
T Consensus        98 ~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~  176 (281)
T d1r0wa_          98 RVSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKD  176 (281)
T ss_dssp             CEEEECSSCCCCSEEHHHHHTTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCCCEEECCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
T ss_conf             999981643026760321420333-4560579999999776999984612332355554237799999999999999869


Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHH
Q ss_conf             998998266789998979999999-9987189759998149236530698999949779881492466209985359999
Q 000856         1167 PAILLLDEATSALDAESECVLQEA-LERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLL 1245 (1252)
Q Consensus      1167 p~ILiLDEpTSaLD~~te~~i~~~-l~~~~~~~TvI~IsHrl~ti~~~D~I~vl~~G~ive~G~~~eLl~~~~g~y~~l~ 1245 (1252)
                      |+|||||||||+||+.++..+++. +....+++|+|+||||++.++.||||++|++|+|+++|+|+||++. .+.|++.+
T Consensus       177 p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~  255 (281)
T d1r0wa_         177 ADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKL  255 (281)
T ss_dssp             CSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred             CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCC-CCHHHHHH
T ss_conf             63513338554489899999999999886289999999252899985999999989999998789999605-94899987


Q ss_pred             H
Q ss_conf             7
Q 000856         1246 Q 1246 (1252)
Q Consensus      1246 ~ 1246 (1252)
                      .
T Consensus       256 ~  256 (281)
T d1r0wa_         256 M  256 (281)
T ss_dssp             H
T ss_pred             C
T ss_conf             2

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=0  Score=379.21  Aligned_cols=220  Identities=30%  Similarity=0.522  Sum_probs=193.9

Q ss_pred             CEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf             19999589988998884420002699837959999849999868899998523779975699899316899978873220
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .|+++|++++|+   +..+|+|+||+|++||.+||+||||||||||++++.|+++|++|+|.+||.|+...+..  |+++
T Consensus         6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i   80 (239)
T d1v43a3           6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI   80 (239)
T ss_dssp             CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred             EEEEEEEEEEEC---CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf             499987999999---99998130678879989999999998299999999758999878799916413547700--0158


Q ss_pred             EEECCCCCCCC-CCHHHHHCCCCC--CCCH----HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             88804665575-558888522999--9999----9999999980721258608986788568999988925999999999
Q 000856         1089 GLVQQEPALFA-ASIFDNIAYGKE--GATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIAR 1161 (1252)
Q Consensus      1089 ~~V~Q~~~LF~-gTIreNL~~g~~--~~sd----~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalAR 1161 (1252)
                      +||||++.+|. .|++||+.++..  ..+.    +.+.++++..++.++.+..|           ..||||||||++|||
T Consensus        81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGGq~QRvaiAr  149 (239)
T d1v43a3          81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVAR  149 (239)
T ss_dssp             EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHH
T ss_pred             EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH-----------HHCCHHHHHHHHHHH
T ss_conf             998003353422209999999998739999999999999998759855660995-----------469999988999976


Q ss_pred             HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHCCCC
Q ss_conf             9713999899826678999897999999999871-8-9759998149236530-69899994977988149246620998
Q 000856         1162 AVLKNPAILLLDEATSALDAESECVLQEALERLM-R-GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPD 1238 (1252)
Q Consensus      1162 ALl~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~-~-~~TvI~IsHrl~ti~~-~D~I~vl~~G~ive~G~~~eLl~~~~ 1238 (1252)
                      ||+.+|+||+||||||+||+.+...+++.+.++. + ++|+|+|||+++.+.. ||||++|++|+|++.|+++++.++|.
T Consensus       150 aL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~  229 (239)
T d1v43a3         150 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN  229 (239)
T ss_dssp             HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred             HHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCC
T ss_conf             64049982430688666898999899999999987319807999489999998699999998999999859999986899


Q ss_pred             CHHHHH
Q ss_conf             535999
Q 000856         1239 GAYSRL 1244 (1252)
Q Consensus      1239 g~y~~l 1244 (1252)
                      ..|.+-
T Consensus       230 ~~~~~~  235 (239)
T d1v43a3         230 SVFVAT  235 (239)
T ss_dssp             BHHHHH
T ss_pred             CHHHHH
T ss_conf             989999

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=0  Score=390.34  Aligned_cols=218  Identities=27%  Similarity=0.439  Sum_probs=198.4

Q ss_pred             CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHH
Q ss_conf             40899968898899999743012038860898999985899818999999951467998589889931667788988320
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ  442 (1252)
Q Consensus       363 ~~i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~  442 (1252)
                      ..|.|+|++|.+     .++|+|+||++++|+++||+||||||||||+++|+|+++|++|+|.++|             +
T Consensus        37 ~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~   98 (281)
T d1r0wa_          37 NNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R   98 (281)
T ss_dssp             ---CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred             CCEEEEECCCCC-----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC-------------E
T ss_conf             967999769899-----7677375999859999999989998299999999579747882899999-------------9


Q ss_pred             CEEECCCCCCCHHCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             14773678776111999971599999999999999995379988509997544125999988968999999999860099
Q 000856          443 IGLVNQEPALFATTILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNP  522 (1252)
Q Consensus       443 i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal~~~~  522 (1252)
                      ++|++|++++|++||+||+.++. ...+.++..+++.+.+.+++..+|+++++.+++.|.+||||||||++||||++++|
T Consensus        99 i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p  177 (281)
T d1r0wa_          99 VSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA  177 (281)
T ss_dssp             EEEECSSCCCCSEEHHHHHTTTS-CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCCCEEECCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             99981643026760321420333-45605799999997769999846123323555542377999999999999998696


Q ss_pred             CEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEECCCCCCHHCCCEEEEEECCEEEEECCHHHHHHCCCCHHHHH
Q ss_conf             88887177779996749999999-998618972999815942011039799995988978349578975032139999
Q 000856          523 KILLLDEATSALDAGSESIVQEA-LDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTHEELIAKAGAYASLI  599 (1252)
Q Consensus       523 ~ililDe~ts~lD~~~~~~i~~~-l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~  599 (1252)
                      +|+|||||||+||+.++..+++. +....+++|+|+|||+++.+..||+|++|++|++++.|+|+|+++.++.|...+
T Consensus       178 ~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~  255 (281)
T d1r0wa_         178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKL  255 (281)
T ss_dssp             SEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred             CCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCEEEEEECCEEEEECCHHHHHCCCCHHHHHH
T ss_conf             351333855448989999999999988628999999925289998599999998999999878999960594899987

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=0  Score=380.74  Aligned_cols=216  Identities=31%  Similarity=0.550  Sum_probs=192.5

Q ss_pred             EEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCE
Q ss_conf             99995899889988844200026998379599998499998688999985237799756998993168999788732208
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++||+++|.+    .+|+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|++||.|+.+.+..  |++++
T Consensus         2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig   75 (229)
T d3d31a2           2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA   75 (229)
T ss_dssp             EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred             EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf             899989999499----788433789879989999989998299999999647688878899956734652165--74056


Q ss_pred             EECCCCCCCC-CCHHHHHCCCC---CCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             8804665575-55888852299---9999999999999807212586089867885689999889259999999999713
Q 000856         1090 LVQQEPALFA-ASIFDNIAYGK---EGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK 1165 (1252)
Q Consensus      1090 ~V~Q~~~LF~-gTIreNL~~g~---~~~sd~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARALl~ 1165 (1252)
                      +|+|++.+|. .|++||+.++.   ....++++.++++..++.++.+..|           ..||||||||++|||||+.
T Consensus        76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSGG~~QRvaiAraL~~  144 (229)
T d3d31a2          76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVT  144 (229)
T ss_dssp             EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTS
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHCCH-----------HHCCHHHHCCHHHHHHHHC
T ss_conf             15121111746657788888776405538999999999825655575895-----------5479998401403043443


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHCCCCCHHH
Q ss_conf             999899826678999897999999999871--89759998149236530-698999949779881492466209985359
Q 000856         1166 NPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAYS 1242 (1252)
Q Consensus      1166 ~p~ILiLDEpTSaLD~~te~~i~~~l~~~~--~~~TvI~IsHrl~ti~~-~D~I~vl~~G~ive~G~~~eLl~~~~g~y~ 1242 (1252)
                      +|++||||||||+||+.+...+++.+.++.  .+.|+|+|||+++.+.. ||||++|++|++++.|+|+++++++...|.
T Consensus       145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~v  224 (229)
T d3d31a2         145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV  224 (229)
T ss_dssp             CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHH
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHH
T ss_conf             67714434787679989999999999999864796899974999999996999999979999998699999868998799

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=0  Score=382.32  Aligned_cols=223  Identities=30%  Similarity=0.498  Sum_probs=195.5

Q ss_pred             CEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC---HHHHH
Q ss_conf             199995899889988844200026998379599998499998688999985237799756998993168999---78873
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN---LKSLR 1085 (1252)
Q Consensus      1009 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---~~~lR 1085 (1252)
                      .|+++||+++|+.. +..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+   ....|
T Consensus         3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r   81 (242)
T d1oxxk2           3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED   81 (242)
T ss_dssp             CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred             EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf             89997579998899-98998040789879989999989998099999999758688874599999995137311153120


Q ss_pred             CCCEEECCCCCCCCC-CHHHHHCCCCC--CCC----HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             220888046655755-58888522999--999----99999999980721258608986788568999988925999999
Q 000856         1086 LKIGLVQQEPALFAA-SIFDNIAYGKE--GAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 1158 (1252)
Q Consensus      1086 ~~i~~V~Q~~~LF~g-TIreNL~~g~~--~~s----d~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRla 1158 (1252)
                      +++++|+|++.||.. |++||+.++..  ..+    ++.+.++++.+++.++....|           ..||||||||++
T Consensus        82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----------~~LSGGqkQRva  150 (242)
T d1oxxk2          82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQRVA  150 (242)
T ss_dssp             SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHCCH-----------HHCCHHHHHHHH
T ss_conf             451477304334666657777665567613799999999999986659176664895-----------459999985899


Q ss_pred             HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHC
Q ss_conf             9999713999899826678999897999999999871--89759998149236530-69899994977988149246620
Q 000856         1159 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1159 lARALl~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~--~~~TvI~IsHrl~ti~~-~D~I~vl~~G~ive~G~~~eLl~ 1235 (1252)
                      |||||+.+|++||+|||||+||+.+...+++.++++.  .+.|+|+|||+++.+.. ||||++|++|+|++.|+|+++.+
T Consensus       151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~  230 (242)
T d1oxxk2         151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD  230 (242)
T ss_dssp             HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf             87577604661454478667998998899899999986359879999799999999699999998999999869999986


Q ss_pred             CCCCHHHH
Q ss_conf             99853599
Q 000856         1236 RPDGAYSR 1243 (1252)
Q Consensus      1236 ~~~g~y~~ 1243 (1252)
                      +|...|.+
T Consensus       231 ~P~~~~~~  238 (242)
T d1oxxk2         231 NPVSIQVA  238 (242)
T ss_dssp             SCSSHHHH
T ss_pred             CCCCHHHH
T ss_conf             89997998

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=380.59  Aligned_cols=218  Identities=33%  Similarity=0.514  Sum_probs=192.9

Q ss_pred             EEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCE
Q ss_conf             99995899889988844200026998379599998499998688999985237799756998993168999788732208
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      |+++||+++|.+   ..+|+|+||+|++||.+||+||||||||||++++.|+++|++|+|++||.++.+.+.  .|++|+
T Consensus         1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~--~~r~ig   75 (232)
T d2awna2           1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP--AERGVG   75 (232)
T ss_dssp             EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG--GGTCEE
T ss_pred             CEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCH--HHCEEE
T ss_conf             999999999899---999811177886998999998999829999999965878888889999997788864--443222


Q ss_pred             EECCCCCCCCC-CHHHHHCCCCC--CC----CHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             88046655755-58888522999--99----9999999999807212586089867885689999889259999999999
Q 000856         1090 LVQQEPALFAA-SIFDNIAYGKE--GA----TEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARA 1162 (1252)
Q Consensus      1090 ~V~Q~~~LF~g-TIreNL~~g~~--~~----sd~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARA 1162 (1252)
                      ||||++.+|.. |++||+.++..  ..    .++.+.++++..++.++.+..|           ..||||||||++||||
T Consensus        76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAra  144 (232)
T d2awna2          76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT  144 (232)
T ss_dssp             EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred             EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHH
T ss_conf             34334202643337889789998759988999999999997578865664896-----------5699999999999999


Q ss_pred             HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHCCCCC
Q ss_conf             713999899826678999897999999999871--89759998149236530-698999949779881492466209985
Q 000856         1163 VLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDG 1239 (1252)
Q Consensus      1163 Ll~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~--~~~TvI~IsHrl~ti~~-~D~I~vl~~G~ive~G~~~eLl~~~~g 1239 (1252)
                      |+.+|++|+|||||++||+.+...+++.+.+..  .++|+|+|||+++.+.. ||||++|++|+|++.|+|+++++++..
T Consensus       145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~  224 (232)
T d2awna2         145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD  224 (232)
T ss_dssp             HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred             HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCC
T ss_conf             70399889975888788988998999999999874298799994899999996999999979999998089999738999


Q ss_pred             HHHH
Q ss_conf             3599
Q 000856         1240 AYSR 1243 (1252)
Q Consensus      1240 ~y~~ 1243 (1252)
                      .|.+
T Consensus       225 ~~v~  228 (232)
T d2awna2         225 RFVA  228 (232)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             7999

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=382.03  Aligned_cols=222  Identities=33%  Similarity=0.581  Sum_probs=193.8

Q ss_pred             EEEEEEEEECCCCCC-CCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH---HH
Q ss_conf             999958998899888-44200026998379599998499998688999985237799756998993168999788---73
Q 000856         1010 IELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS---LR 1085 (1252)
Q Consensus      1010 I~~~nVsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~---lR 1085 (1252)
                      |+++||+++|+.+.. ..||+|+||+|++||.+||+||||||||||+++|.|+.+|++|+|.++|.|+...+.+.   +|
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r   81 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR   81 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred             EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf             79982799969998148986150578869979999899989888999987588636677328867685208755511554


Q ss_pred             CCCEEECCCCCCCCC-CHHHHHCCCC--CCCC----HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             220888046655755-5888852299--9999----99999999980721258608986788568999988925999999
Q 000856         1086 LKIGLVQQEPALFAA-SIFDNIAYGK--EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIA 1158 (1252)
Q Consensus      1086 ~~i~~V~Q~~~LF~g-TIreNL~~g~--~~~s----d~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRla 1158 (1252)
                      +++++|||++.+|.. |++||+.++.  ...+    ++.+.++++.+++.++....|           ..||||||||+|
T Consensus        82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~-----------~~LSGG~~QRva  150 (240)
T d3dhwc1          82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQRVA  150 (240)
T ss_dssp             HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCB-----------SCCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCH-----------HHCCHHHHHHHH
T ss_conf             166430225222799649999999999849998999999999999769903554894-----------349999998999


Q ss_pred             HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHC
Q ss_conf             9999713999899826678999897999999999871-8-9759998149236530-69899994977988149246620
Q 000856         1159 IARAVLKNPAILLLDEATSALDAESECVLQEALERLM-R-GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1159 lARALl~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~-~-~~TvI~IsHrl~ti~~-~D~I~vl~~G~ive~G~~~eLl~ 1235 (1252)
                      |||||+.+|++||+||||++||+.+...|++.|.++. + +.|+|+|||+++.+.. ||||++|++|+|+|.|+++++++
T Consensus       151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~  230 (240)
T d3dhwc1         151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS  230 (240)
T ss_dssp             HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred             HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf             86401058986874465565898885679999999986469789998389999998699999997999999879999972


Q ss_pred             CCCCHHH
Q ss_conf             9985359
Q 000856         1236 RPDGAYS 1242 (1252)
Q Consensus      1236 ~~~g~y~ 1242 (1252)
                      ++...|.
T Consensus       231 ~P~~~~t  237 (240)
T d3dhwc1         231 HPKTPLA  237 (240)
T ss_dssp             SSCCTTT
T ss_pred             CCCCHHH
T ss_conf             8998577

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=0  Score=381.14  Aligned_cols=221  Identities=28%  Similarity=0.484  Sum_probs=193.5

Q ss_pred             CEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH----H
Q ss_conf             199995899889988844200026998379599998499998688999985237799756998993168999788----7
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKS----L 1084 (1252)
Q Consensus      1009 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~----l 1084 (1252)
                      .|+++||+++|.+   .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+...    .
T Consensus         3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~   79 (240)
T d1g2912           3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK   79 (240)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred             CEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf             1899869999899---9998560668869989999999998099999999648788989899999980356644424532


Q ss_pred             HCCCEEECCCCCCCCC-CHHHHHCCCC--CCCC----HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             3220888046655755-5888852299--9999----9999999998072125860898678856899998892599999
Q 000856         1085 RLKIGLVQQEPALFAA-SIFDNIAYGK--EGAT----EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRI 1157 (1252)
Q Consensus      1085 R~~i~~V~Q~~~LF~g-TIreNL~~g~--~~~s----d~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRl 1157 (1252)
                      |+++++|+|+|.+|.. |++||+.++.  ...+    ++.+.++++.+++.++....|           ..||||||||+
T Consensus        80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----------~~LSGGqkQRv  148 (240)
T d1g2912          80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQRV  148 (240)
T ss_dssp             GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHHH
T ss_pred             CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCH-----------HHCCHHHHHHH
T ss_conf             2551200221222310116676330687729998999999999998759966762993-----------34999999999


Q ss_pred             HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHH
Q ss_conf             99999713999899826678999897999999999871-8-9759998149236530-6989999497798814924662
Q 000856         1158 AIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-R-GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELV 1234 (1252)
Q Consensus      1158 alARALl~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~-~-~~TvI~IsHrl~ti~~-~D~I~vl~~G~ive~G~~~eLl 1234 (1252)
                      +|||||+.+|++|||||||++||+.+...+++.+.++. + +.|+|+|||+++.+.. ||||++|++|+|++.|+|+|++
T Consensus       149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~  228 (240)
T d1g2912         149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY  228 (240)
T ss_dssp             HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf             99999826998898258876569899989999999998636988999959999999969999999899999985999998


Q ss_pred             CCCCCHHHH
Q ss_conf             099853599
Q 000856         1235 SRPDGAYSR 1243 (1252)
Q Consensus      1235 ~~~~g~y~~ 1243 (1252)
                      +++...|.+
T Consensus       229 ~~P~~~~~~  237 (240)
T d1g2912         229 DKPANTFVA  237 (240)
T ss_dssp             HSCSBHHHH
T ss_pred             HCCCCHHHH
T ss_conf             289998989

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=0  Score=370.99  Aligned_cols=210  Identities=33%  Similarity=0.512  Sum_probs=178.2

Q ss_pred             EEEEEEEEECCCCCC-CCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH----
Q ss_conf             999958998899888-442000269983795999984999986889999852377997569989931689997887----
Q 000856         1010 IELRHVDFAYPSRPD-VVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSL---- 1084 (1252)
Q Consensus      1010 I~~~nVsf~Y~~~~~-~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~l---- 1084 (1252)
                      |+++||+++|+.... ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+...+.+.+    
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r   81 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR   81 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf             89990799948998208987133778849979999889999821655750688777766269999985768855512312


Q ss_pred             HCCCEEECCCCCCCC-CCHHHHHCCC-----CCCCCHH----HHHHHHHHCCCHHH-HHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf             322088804665575-5588885229-----9999999----99999998072125-86089867885689999889259
Q 000856         1085 RLKIGLVQQEPALFA-ASIFDNIAYG-----KEGATEA----EVVEAARAANVHGF-VSALPNAYKTPVGERGVQLSGGQ 1153 (1252)
Q Consensus      1085 R~~i~~V~Q~~~LF~-gTIreNL~~g-----~~~~sd~----~i~~al~~a~l~~~-i~~lp~Gldt~vge~G~~LSgGQ 1153 (1252)
                      |++|+||+|++.+|. -|++||+.++     .+..+.+    ++.+.++..++.+. ....|           ..|||||
T Consensus        82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----------~~LSGGq  150 (230)
T d1l2ta_          82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----------NQLSGGQ  150 (230)
T ss_dssp             HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----------GGSCHHH
T ss_pred             CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----------HHCCHHH
T ss_conf             55577880412417686688877578887224789999999999998876242345534880-----------2389999


Q ss_pred             HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHHCCCEEEEEECCEEEEECCH
Q ss_conf             999999999713999899826678999897999999999871--89759998149236530698999949779881492
Q 000856         1154 KQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSH 1230 (1252)
Q Consensus      1154 kQRlalARALl~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~--~~~TvI~IsHrl~ti~~~D~I~vl~~G~ive~G~~ 1230 (1252)
                      |||+||||||..+|++|+||||||+||+.+...|++.+.++.  .++|+|+|||+++.++.||||++|++|+|+++|++
T Consensus       151 kQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         151 QQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf             9999987565227888994687654698999999999999998439999998788899986998999989999995257

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=0  Score=371.26  Aligned_cols=222  Identities=28%  Similarity=0.497  Sum_probs=192.1

Q ss_pred             CEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC--------
Q ss_conf             199995899889988844200026998379599998499998688999985237799756998993168999--------
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLN-------- 1080 (1252)
Q Consensus      1009 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-------- 1080 (1252)
                      .|+++||+++|.+   .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|++||.++...+        
T Consensus         2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~   78 (258)
T d1b0ua_           2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV   78 (258)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred             EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf             6999978999899---9988150668869979999989998299999999747667899779999993367752000023


Q ss_pred             -----HHHHHCCCEEECCCCCCCC-CCHHHHHCCC---CCCCC----HHHHHHHHHHCCCHHHHH-HCCCCCCCCCCCCC
Q ss_conf             -----7887322088804665575-5588885229---99999----999999999807212586-08986788568999
Q 000856         1081 -----LKSLRLKIGLVQQEPALFA-ASIFDNIAYG---KEGAT----EAEVVEAARAANVHGFVS-ALPNAYKTPVGERG 1146 (1252)
Q Consensus      1081 -----~~~lR~~i~~V~Q~~~LF~-gTIreNL~~g---~~~~s----d~~i~~al~~a~l~~~i~-~lp~Gldt~vge~G 1146 (1252)
                           ...+|+++++|+|+|.+|. .|++||+.++   ....+    ++.+.++++.+++.+... ..|           
T Consensus        79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-----------  147 (258)
T d1b0ua_          79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYP-----------  147 (258)
T ss_dssp             SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----------
T ss_pred             CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----------
T ss_conf             517679997454489983323141101021365657876299989999999999998299524430682-----------


Q ss_pred             CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEE
Q ss_conf             9889259999999999713999899826678999897999999999871-89759998149236530-698999949779
Q 000856         1147 VQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRI 1224 (1252)
Q Consensus      1147 ~~LSgGQkQRlalARALl~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~-~~~TvI~IsHrl~ti~~-~D~I~vl~~G~i 1224 (1252)
                      ..|||||+||++|||||..+|++|||||||++||+.+...|++.|+++. +++|+|+|||++..+.. ||||+||.+|+|
T Consensus       148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~i  227 (258)
T d1b0ua_         148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI  227 (258)
T ss_dssp             GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEE
T ss_conf             20567788898999998439987885245556887888899876554103688338994899999986999999979999


Q ss_pred             EEECCHHHHHCCCCCHHHHH
Q ss_conf             88149246620998535999
Q 000856         1225 VEQGSHSELVSRPDGAYSRL 1244 (1252)
Q Consensus      1225 ve~G~~~eLl~~~~g~y~~l 1244 (1252)
                      ++.|+++|+++++...|.+-
T Consensus       228 v~~g~~~ev~~~P~~~~~~~  247 (258)
T d1b0ua_         228 EEEGDPEQVFGNPQSPRLQQ  247 (258)
T ss_dssp             EEEECHHHHHHSCCSHHHHH
T ss_pred             EEECCHHHHHHCCCCHHHHH
T ss_conf             99849999983899999999

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=1.5e-44  Score=357.62  Aligned_cols=220  Identities=24%  Similarity=0.413  Sum_probs=181.7

Q ss_pred             CCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHH-C
Q ss_conf             519999589988998884420002699837959999849999868899998523779975699899316899978873-2
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLR-L 1086 (1252)
Q Consensus      1008 g~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR-~ 1086 (1252)
                      --++++|++++|.+   ..+|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+...+.+..+ .
T Consensus         5 ~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~   81 (240)
T d1ji0a_           5 IVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM   81 (240)
T ss_dssp             EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred             EEEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf             07999618999899---888830257888997999999999859999999967888880389842443446608888874


Q ss_pred             CCEEECCCCCCCCC-CHHHHHCCCCCC-CCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             20888046655755-588885229999-9999999999980721258608986788568999988925999999999971
Q 000856         1087 KIGLVQQEPALFAA-SIFDNIAYGKEG-ATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 1164 (1252)
Q Consensus      1087 ~i~~V~Q~~~LF~g-TIreNL~~g~~~-~sd~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARALl 1164 (1252)
                      .++++||++.+|+. |++||+.++... ...++..+.++.+.  +....+.+..+..+    ..||||||||++|||||+
T Consensus        82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~----~~LSGG~~Qrv~iAraL~  155 (240)
T d1ji0a_          82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF--SLFPRLKERLKQLG----GTLSGGEQQMLAIGRALM  155 (240)
T ss_dssp             TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHH--HHCHHHHTTTTSBS----SSSCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHCHHHHHHCCH----HHCCHHHHHHHHHHHHHH
T ss_conf             235567655457763699999988873278889999999999--87417688875854----338999999999999998


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHCC
Q ss_conf             3999899826678999897999999999871-89759998149236530-698999949779881492466209
Q 000856         1165 KNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1165 ~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~-~~~TvI~IsHrl~ti~~-~D~I~vl~~G~ive~G~~~eLl~~ 1236 (1252)
                      .+|++|+|||||++||+.+...+++.++++. +|+|+|++||+++.+.. ||||++|++|++++.|++++++++
T Consensus       156 ~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~  229 (240)
T d1ji0a_         156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN  229 (240)
T ss_dssp             TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred             HCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf             29987400398867999999999999999996899899995889999996999999989999998489998429

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=9.8e-45  Score=359.06  Aligned_cols=214  Identities=22%  Similarity=0.401  Sum_probs=180.4

Q ss_pred             CEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHC-C
Q ss_conf             199995899889988844200026998379599998499998688999985237799756998993168999788732-2
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRL-K 1087 (1252)
Q Consensus      1009 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~-~ 1087 (1252)
                      -++++||+.+|.+   .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|+...+....++ .
T Consensus         4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g   80 (254)
T d1g6ha_           4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG   80 (254)
T ss_dssp             EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred             EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf             6999778999799---6887121799889979999999998499999999779768873799999966405699999833


Q ss_pred             CEEECCCCCCCC-CCHHHHHCCCCCC---------------CCH----HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf             088804665575-5588885229999---------------999----99999999807212586089867885689999
Q 000856         1088 IGLVQQEPALFA-ASIFDNIAYGKEG---------------ATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGV 1147 (1252)
Q Consensus      1088 i~~V~Q~~~LF~-gTIreNL~~g~~~---------------~sd----~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~ 1147 (1252)
                      ++++||+|.+|. .|++||+.++...               ..+    +++.++++..++.+.       .|..+    .
T Consensus        81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~----~  149 (254)
T d1g6ha_          81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-------YDRKA----G  149 (254)
T ss_dssp             EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-------TTSBG----G
T ss_pred             CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHH-------CCCCH----H
T ss_conf             872577642478874232143013330345045665421353289999999999876196302-------05953----5


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEE
Q ss_conf             889259999999999713999899826678999897999999999871-89759998149236530-6989999497798
Q 000856         1148 QLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIV 1225 (1252)
Q Consensus      1148 ~LSgGQkQRlalARALl~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~-~~~TvI~IsHrl~ti~~-~D~I~vl~~G~iv 1225 (1252)
                      .||||||||++|||||+.+|++|||||||++||+.+...+++.++++. +|+|+|+|+|+++.+.. ||||+||++|+|+
T Consensus       150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv  229 (254)
T d1g6ha_         150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII  229 (254)
T ss_dssp             GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf             69918888999999997592723243976569999999999999999978998999947699999869999999699899


Q ss_pred             EECCHHHHHCC
Q ss_conf             81492466209
Q 000856         1226 EQGSHSELVSR 1236 (1252)
Q Consensus      1226 e~G~~~eLl~~ 1236 (1252)
                      ++|+++|+.++
T Consensus       230 ~~g~~~e~~~~  240 (254)
T d1g6ha_         230 AEGRGEEEIKN  240 (254)
T ss_dssp             EEEESHHHHHH
T ss_pred             EEECHHHHHHC
T ss_conf             99668998654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6.4e-44  Score=352.85  Aligned_cols=215  Identities=24%  Similarity=0.402  Sum_probs=186.1

Q ss_pred             CCEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCC
Q ss_conf             51999958998899888442000269983795999984999986889999852377997569989931689997887322
Q 000856         1008 GEIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK 1087 (1252)
Q Consensus      1008 g~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~ 1087 (1252)
                      |.|+++|++.+|..   .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|+.+ ....+|++
T Consensus         1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~   76 (238)
T d1vpla_           1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL   76 (238)
T ss_dssp             CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred             CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC-CHHHHHHH
T ss_conf             97899958999999---999806256884897999999999999999999966988788879998672446-83988721


Q ss_pred             CEEECCCCCCCCC-CHHHHHCCCC--CCCCHHH----HHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             0888046655755-5888852299--9999999----9999998072125860898678856899998892599999999
Q 000856         1088 IGLVQQEPALFAA-SIFDNIAYGK--EGATEAE----VVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIA 1160 (1252)
Q Consensus      1088 i~~V~Q~~~LF~g-TIreNL~~g~--~~~sd~~----i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalA 1160 (1252)
                      ++||||++.+|.. |++||+.+..  ...+.++    +.++++..++.+.....           ...||||||||++||
T Consensus        77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lSgG~~qrv~iA  145 (238)
T d1vpla_          77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDR-----------VSTYSKGMVRKLLIA  145 (238)
T ss_dssp             EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSB-----------GGGCCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHH-----------HHHCCHHHHHHHHHH
T ss_conf             867500154687866778889899861799899999999999867978888504-----------533799898999999


Q ss_pred             HHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHCCC
Q ss_conf             99713999899826678999897999999999871-89759998149236530-6989999497798814924662099
Q 000856         1161 RAVLKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRP 1237 (1252)
Q Consensus      1161 RALl~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~-~~~TvI~IsHrl~ti~~-~D~I~vl~~G~ive~G~~~eLl~~~ 1237 (1252)
                      |||+.+|++|+|||||++||+.+...+++.+++.. +|+|+|++||+++.+.. ||||++|++|++++.|+|+++.++.
T Consensus       146 ~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~  224 (238)
T d1vpla_         146 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY  224 (238)
T ss_dssp             HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred             HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf             9986599988733798897989999999999999965998999959899999969999999899999992899998652

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=2.8e-44  Score=355.59  Aligned_cols=210  Identities=30%  Similarity=0.511  Sum_probs=184.7

Q ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCE
Q ss_conf             89996889889999974301203886089899998589981899999995146799858988993166778898832014
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      |+++|++++|++    .+|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|.++.+.+..  |++++
T Consensus         2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig   75 (229)
T d3d31a2           2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA   75 (229)
T ss_dssp             EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred             EEEEEEEEEECC----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HHCCE
T ss_conf             899989999499----788433789879989999989998299999999647688878899956734652165--74056


Q ss_pred             EECCCCCCCHH-CHHHHHHCCCC---CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             77367877611-19999715999---999999999999953799885099975441259999889689999999998600
Q 000856          445 LVNQEPALFAT-TILENILYGKP---EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       445 ~v~Q~~~l~~~-ti~~Ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal~~  520 (1252)
                      ||+|++.||.. |++||+.++..   ....+++.++++..++           ..........||||||||++||||++.
T Consensus        76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSGG~~QRvaiAraL~~  144 (229)
T d3d31a2          76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI-----------EHLLDRNPLTLSGGEQQRVALARALVT  144 (229)
T ss_dssp             EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTC-----------TTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-----------HHHHHCCHHHCCHHHHCCHHHHHHHHC
T ss_conf             151211117466577888887764055389999999998256-----------555758955479998401403043443


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCHHC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf             998888717777999674999999999861--89729998159420110-397999959889783495789750
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       521 ~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      +|++|||||||++||+.+...+++.++++.  .+.|+|+|||++..+.. ||+|++|++|++++.|+++|++++
T Consensus       145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~  218 (229)
T d3d31a2         145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK  218 (229)
T ss_dssp             CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf             67714434787679989999999999999864796899974999999996999999979999998699999868

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=7.6e-44  Score=352.31  Aligned_cols=217  Identities=27%  Similarity=0.442  Sum_probs=186.9

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
Q ss_conf             08999688988999997430120388608989999858998189999999514679985898899316677889883201
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++++|++   ..+|+++||++++||+++|+||||||||||++++.|+++|++|+|.++|+|+...+..  ++++
T Consensus         6 ~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i   80 (239)
T d1v43a3           6 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI   80 (239)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred             EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCC--CCEE
T ss_conf             4999879999999---9998130678879989999999998299999999758999878799916413547700--0158


Q ss_pred             EEECCCCCCCHH-CHHHHHHCCCCC--CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             477367877611-199997159999--99999999999953799885099975441259999889689999999998600
Q 000856          444 GLVNQEPALFAT-TILENILYGKPE--ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK  520 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal~~  520 (1252)
                      +||+|++.+|.. |++||+.++...  .+.++..+..     .+.++.+  |+..........||||||||++||||++.
T Consensus        81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~  153 (239)
T d1v43a3          81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV-----RWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV  153 (239)
T ss_dssp             EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHH-----HHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred             EEEEECHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHC--CCHHHHCCCHHHCCHHHHHHHHHHHHHCC
T ss_conf             9980033534222099999999987399999999999-----9999875--98556609954699999889999766404


Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCCCHHC-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf             998888717777999674999999999861-8-9729998159420110-3979999598897834957897503
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       521 ~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      +|++++|||||++||+.+...+++.++++. + +.|+|+|||++..+.. ||+|++|++|+|++.|+++++.++.
T Consensus       154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P  228 (239)
T d1v43a3         154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP  228 (239)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf             998243068866689899989999999998731980799948999999869999999899999985999998689

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-44  Score=356.90  Aligned_cols=211  Identities=29%  Similarity=0.474  Sum_probs=183.4

Q ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCE
Q ss_conf             89996889889999974301203886089899998589981899999995146799858988993166778898832014
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      |+++|++++|++   ..+|+|+||++++||+++|+||||||||||++++.|+++|++|+|.++|+++.+.+..  +++++
T Consensus         1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig   75 (232)
T d2awna2           1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG   75 (232)
T ss_dssp             EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred             CEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH--HCEEE
T ss_conf             999999999899---9998111778869989999989998299999999658788888899999977888644--43222


Q ss_pred             EECCCCCCCHH-CHHHHHHCCCCCC------CHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             77367877611-1999971599999------9999999999953799885099975441259999889689999999998
Q 000856          445 LVNQEPALFAT-TILENILYGKPEA------TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARA  517 (1252)
Q Consensus       445 ~v~Q~~~l~~~-ti~~Ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARa  517 (1252)
                      ||+|++.+|.. |++||+.++....      ..+++.+.++..++.++.           ......||||||||++||||
T Consensus        76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-----------~~~~~~LSGGqkQRvaiAra  144 (232)
T d2awna2          76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGRT  144 (232)
T ss_dssp             EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred             EECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHH-----------HCCHHHCCHHHHHHHHHHHH
T ss_conf             3433420264333788978999875998899999999999757886566-----------48965699999999999999


Q ss_pred             HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCHHC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf             600998888717777999674999999999861--89729998159420110-397999959889783495789750
Q 000856          518 MLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       518 l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      ++.+|++++|||||++||+.+...+++.+.++.  .++|+|++||++..+.. ||+|++|++|++++.|+++|++++
T Consensus       145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~  221 (232)
T d2awna2         145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY  221 (232)
T ss_dssp             HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHC
T ss_conf             70399889975888788988998999999999874298799994899999996999999979999998089999738

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.8e-44  Score=354.69  Aligned_cols=216  Identities=34%  Similarity=0.526  Sum_probs=185.1

Q ss_pred             EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH---HH
Q ss_conf             899968898899999-74301203886089899998589981899999995146799858988993166778898---83
Q 000856          365 IEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW---LR  440 (1252)
Q Consensus       365 i~~~~v~f~y~~~~~-~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~~  440 (1252)
                      |+++|++++|++... ..+|+|+||++++||.++|+||||||||||+++|.|+.+|++|+|.++|+++...+...   +|
T Consensus         2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r   81 (240)
T d3dhwc1           2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR   81 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred             EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHHH
T ss_conf             79982799969998148986150578869979999899989888999987588636677328867685208755511554


Q ss_pred             HHCEEECCCCCCCHH-CHHHHHHCCC-----CC-CCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             201477367877611-1999971599-----99-9999999999995379988509997544125999988968999999
Q 000856          441 DQIGLVNQEPALFAT-TILENILYGK-----PE-ATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIA  513 (1252)
Q Consensus       441 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~-----~~-~~~~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqria  513 (1252)
                      ++++||+|++.+|+. |++||+.++.     +. ...+++.+.++.+++.+           ........||||||||++
T Consensus        82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~-----------~~~~~~~~LSGG~~QRva  150 (240)
T d3dhwc1          82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGD-----------KHDSYPSNLSGGQKQRVA  150 (240)
T ss_dssp             HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTT-----------TTSSCBSCCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCH-----------HHHCCHHHCCHHHHHHHH
T ss_conf             166430225222799649999999999849998999999999999769903-----------554894349999998999


Q ss_pred             HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCCCHHC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf             9998600998888717777999674999999999861-8-9729998159420110-39799995988978349578975
Q 000856          514 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       514 lARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      ||||+..+|++||+||||++||+.+...+++.+.++. + +.|+|+|||++..+.. ||+|++|++|+|++.|+.+++++
T Consensus       151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~  230 (240)
T d3dhwc1         151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS  230 (240)
T ss_dssp             HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred             HHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf             86401058986874465565898885679999999986469789998389999998699999997999999879999972


Q ss_pred             C
Q ss_conf             0
Q 000856          591 K  591 (1252)
Q Consensus       591 ~  591 (1252)
                      +
T Consensus       231 ~  231 (240)
T d3dhwc1         231 H  231 (240)
T ss_dssp             S
T ss_pred             C
T ss_conf             8

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.1e-43  Score=351.17  Aligned_cols=218  Identities=33%  Similarity=0.533  Sum_probs=184.3

Q ss_pred             EEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCE
Q ss_conf             99995899889988844200026998379599998499998688999985237799756998993168999788732208
Q 000856         1010 IELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIG 1089 (1252)
Q Consensus      1010 I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~ 1089 (1252)
                      +++ ++..+|.+   . .+ |+||+++ ||.++|+||||||||||+++|.|+++|++|+|.+||.|+.+++..  |++|+
T Consensus         3 l~v-~~~k~~g~---~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig   73 (240)
T d2onka1           3 LKV-RAEKRLGN---F-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG   73 (240)
T ss_dssp             EEE-EEEEEETT---E-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred             EEE-EEEEEECC---E-EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf             999-99999899---9-99-9999749-979999979998099999999739998962899999998869989--92852


Q ss_pred             EECCCCCCCC-CCHHHHHCCCCCCCCH----HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             8804665575-5588885229999999----9999999980721258608986788568999988925999999999971
Q 000856         1090 LVQQEPALFA-ASIFDNIAYGKEGATE----AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL 1164 (1252)
Q Consensus      1090 ~V~Q~~~LF~-gTIreNL~~g~~~~sd----~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARALl 1164 (1252)
                      ||||++.+|+ -|++||+.++....+.    +.+.++++.+++.++....|           ..||||||||++|||||+
T Consensus        74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----------~~LSGG~kQRvaiAral~  142 (240)
T d2onka1          74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----------ARLSGGERQRVALARALV  142 (240)
T ss_dssp             CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----------GGSCHHHHHHHHHHHHHT
T ss_pred             EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCH-----------HHCCHHHHHHHHHHHHHH
T ss_conf             252314435220155766653233677889999999998638375665794-----------448999989999987775


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHC-CCEEEEEECCEEEEECCHHHHHCCCCCHH
Q ss_conf             39998998266789998979999999998718--9759998149236530-69899994977988149246620998535
Q 000856         1165 KNPAILLLDEATSALDAESECVLQEALERLMR--GRTTVLVAHRLSTIRG-VDCIGVVQDGRIVEQGSHSELVSRPDGAY 1241 (1252)
Q Consensus      1165 ~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~~--~~TvI~IsHrl~ti~~-~D~I~vl~~G~ive~G~~~eLl~~~~g~y 1241 (1252)
                      .+|++|+||||||+||+.+...+++.++++.+  ++|+|+|||+++.+.. ||||++|++|++++.|+++++++.++...
T Consensus       143 ~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v  222 (240)
T d2onka1         143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEV  222 (240)
T ss_dssp             TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSH
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCCCHHH
T ss_conf             16770675286555887999999999999987439769998189999999699999998999999906999832998899


Q ss_pred             HHHHHH
Q ss_conf             999977
Q 000856         1242 SRLLQL 1247 (1252)
Q Consensus      1242 ~~l~~~ 1247 (1252)
                      ++++..
T Consensus       223 ~~fl~~  228 (240)
T d2onka1         223 AEFLSA  228 (240)
T ss_dssp             HHHGGG
T ss_pred             HHHHCC
T ss_conf             998574

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=6e-44  Score=353.02  Aligned_cols=217  Identities=30%  Similarity=0.442  Sum_probs=185.7

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC---HHHHH
Q ss_conf             089996889889999974301203886089899998589981899999995146799858988993166778---89883
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ---LRWLR  440 (1252)
Q Consensus       364 ~i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~~  440 (1252)
                      .|+++|++++|+.. +..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+   ....|
T Consensus         3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r   81 (242)
T d1oxxk2           3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED   81 (242)
T ss_dssp             CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred             EEEEEEEEEEECCC-CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHH
T ss_conf             89997579998899-98998040789879989999989998099999999758688874599999995137311153120


Q ss_pred             HHCEEECCCCCCCHH-CHHHHHHCCCCC--CCHH----HHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             201477367877611-199997159999--9999----999999995379988509997544125999988968999999
Q 000856          441 DQIGLVNQEPALFAT-TILENILYGKPE--ATMA----EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIA  513 (1252)
Q Consensus       441 ~~i~~v~Q~~~l~~~-ti~~Ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqria  513 (1252)
                      ++++||+|++.||+. |++||+.++...  .+.+    ++.++++.+           |+..........||||||||++
T Consensus        82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~-----------gL~~~~~~~p~~LSGGqkQRva  150 (242)
T d1oxxk2          82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL-----------DIHHVLNHFPRELSGAQQQRVA  150 (242)
T ss_dssp             SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHT-----------TCGGGTTSCGGGSCHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------CHHHHHHCCHHHCCHHHHHHHH
T ss_conf             45147730433466665777766556761379999999999998665-----------9176664895459999985899


Q ss_pred             HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCCCHHC-CCEEEEEECCEEEEECCHHHHHH
Q ss_conf             9998600998888717777999674999999999861-8-9729998159420110-39799995988978349578975
Q 000856          514 IARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIA  590 (1252)
Q Consensus       514 lARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~  590 (1252)
                      ||||+..+|+++++||||++||+.+...+++.++++. + +.|+|++||+++.+.. ||+|++|++|+|++.|+++++++
T Consensus       151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~  230 (242)
T d1oxxk2         151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD  230 (242)
T ss_dssp             HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf             87577604661454478667998998899899999986359879999799999999699999998999999869999986


Q ss_pred             CC
Q ss_conf             03
Q 000856          591 KA  592 (1252)
Q Consensus       591 ~~  592 (1252)
                      +.
T Consensus       231 ~P  232 (242)
T d1oxxk2         231 NP  232 (242)
T ss_dssp             SC
T ss_pred             CC
T ss_conf             89

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=5.7e-44  Score=353.25  Aligned_cols=213  Identities=33%  Similarity=0.485  Sum_probs=176.6

Q ss_pred             EEEEEEEEECCCCCC-CCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHH----
Q ss_conf             899968898899999-743012038860898999985899818999999951467998589889931667788988----
Q 000856          365 IEFKNVTFSYPSRPD-VIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWL----  439 (1252)
Q Consensus       365 i~~~~v~f~y~~~~~-~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----  439 (1252)
                      |+++|++++|+.... ..+|+|+||++++||+++|+||||||||||++++.|+++|++|+|.++|.++..++...+    
T Consensus         2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r   81 (230)
T d1l2ta_           2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR   81 (230)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred             EEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHHH
T ss_conf             89990799948998208987133778849979999889999821655750688777766269999985768855512312


Q ss_pred             HHHCEEECCCCCCCHH-CHHHHHHCCC-----CCCCHHHHH-HHHHHHCHHHHHHHCCCCCCC-CCCCCCCCCCHHHHHH
Q ss_conf             3201477367877611-1999971599-----999999999-999995379988509997544-1259999889689999
Q 000856          440 RDQIGLVNQEPALFAT-TILENILYGK-----PEATMAEVE-AAASAANAHSFITLLPNGYST-QVGERGVQLSGGQKQR  511 (1252)
Q Consensus       440 ~~~i~~v~Q~~~l~~~-ti~~Ni~~~~-----~~~~~~~~~-~~~~~~~~~~~i~~lp~g~~t-~v~~~g~~LSgGqkqr  511 (1252)
                      |++++||+|++.+++. |++||+.++.     ...+.++.. .+.+.      ++.+  |+.. ........||||||||
T Consensus        82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~------l~~~--~L~~~~~~~~p~~LSGGqkQR  153 (230)
T d1l2ta_          82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC------LKMA--ELEERFANHKPNQLSGGQQQR  153 (230)
T ss_dssp             HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHH------HHHT--TCCGGGTTCCGGGSCHHHHHH
T ss_pred             CCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH------HHHH--CHHHHHHCCCHHHCCHHHHHH
T ss_conf             55577880412417686688877578887224789999999999998------8762--423455348802389999999


Q ss_pred             HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCCCHHCCCEEEEEECCEEEEECCH
Q ss_conf             999998600998888717777999674999999999861--89729998159420110397999959889783495
Q 000856          512 IAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VGRTTVVVAHRLSTIRNVDTVAVIQQGQVVETGTH  585 (1252)
Q Consensus       512 ialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~~  585 (1252)
                      ++||||+..+|++|+||||||+||+.++..+++.+.++.  .+.|+|+|||+++.+..||+|++|++|+|+++|+.
T Consensus       154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL  229 (230)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCEEEEEECCEEEEECCC
T ss_conf             9987565227888994687654698999999999999998439999998788899986998999989999995257

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=2.9e-44  Score=355.49  Aligned_cols=215  Identities=26%  Similarity=0.429  Sum_probs=183.9

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHH----H
Q ss_conf             089996889889999974301203886089899998589981899999995146799858988993166778898----8
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRW----L  439 (1252)
Q Consensus       364 ~i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~----~  439 (1252)
                      .|+++|++++|++   ..+|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.++|.++...+...    .
T Consensus         3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~   79 (240)
T d1g2912           3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK   79 (240)
T ss_dssp             EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred             CEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCC
T ss_conf             1899869999899---9998560668869989999999998099999999648788989899999980356644424532


Q ss_pred             HHHCEEECCCCCCCHH-CHHHHHHCCCC--CCCH----HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             3201477367877611-19999715999--9999----999999999537998850999754412599998896899999
Q 000856          440 RDQIGLVNQEPALFAT-TILENILYGKP--EATM----AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRI  512 (1252)
Q Consensus       440 ~~~i~~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqri  512 (1252)
                      |++++||+|++.||+. |++||+.++..  ..+.    +++.+.++..++.           .........||||||||+
T Consensus        80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~-----------~~~~~~p~~LSGGqkQRv  148 (240)
T d1g2912          80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-----------ELLNRKPRELSGGQRQRV  148 (240)
T ss_dssp             GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-----------GGTTCCGGGSCHHHHHHH
T ss_pred             CCCCEECCCCHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-----------HHHCCCHHHCCHHHHHHH
T ss_conf             255120022122231011667633068772999899999999999875996-----------676299334999999999


Q ss_pred             HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-C-CCEEEEECCCCCCHHC-CCEEEEEECCEEEEECCHHHHH
Q ss_conf             99998600998888717777999674999999999861-8-9729998159420110-3979999598897834957897
Q 000856          513 AIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-V-GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELI  589 (1252)
Q Consensus       513 alARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~  589 (1252)
                      +|||||..+|++++|||||++||+.+...+++.+.++. + |.|+|+|||++..+.. ||+|++|++|+|++.|+++|++
T Consensus       149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~  228 (240)
T d1g2912         149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY  228 (240)
T ss_dssp             HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf             99999826998898258876569899989999999998636988999959999999969999999899999985999998


Q ss_pred             HCC
Q ss_conf             503
Q 000856          590 AKA  592 (1252)
Q Consensus       590 ~~~  592 (1252)
                      .+.
T Consensus       229 ~~P  231 (240)
T d1g2912         229 DKP  231 (240)
T ss_dssp             HSC
T ss_pred             HCC
T ss_conf             289

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=5.8e-42  Score=337.66  Aligned_cols=217  Identities=29%  Similarity=0.440  Sum_probs=184.1

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHH-H
Q ss_conf             089996889889999974301203886089899998589981899999995146799858988993166778898832-0
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRD-Q  442 (1252)
Q Consensus       364 ~i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~-~  442 (1252)
                      -|+++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...++...++ .
T Consensus         4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g   80 (254)
T d1g6ha_           4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG   80 (254)
T ss_dssp             EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred             EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHC
T ss_conf             6999778999799---6887121799889979999999998499999999779768873799999966405699999833


Q ss_pred             CEEECCCCCCCHH-CHHHHHHCCCCC---------------CCHHH-HHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             1477367877611-199997159999---------------99999-999999953799885099975441259999889
Q 000856          443 IGLVNQEPALFAT-TILENILYGKPE---------------ATMAE-VEAAASAANAHSFITLLPNGYSTQVGERGVQLS  505 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-ti~~Ni~~~~~~---------------~~~~~-~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LS  505 (1252)
                      ++|++|++.+|.. |++||+.++...               ...++ ...+.      +.++.+  |+..........||
T Consensus        81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~--~l~~~~~~~~~~LS  152 (254)
T d1g6ha_          81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAF------KILEFL--KLSHLYDRKAGELS  152 (254)
T ss_dssp             EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHH------HHHHHT--TCGGGTTSBGGGSC
T ss_pred             CCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHH------HHHHHC--CCCHHCCCCHHHCC
T ss_conf             8725776424788742321430133303450456654213532899999999------998761--96302059535699


Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCHHC-CCEEEEEECCEEEEEC
Q ss_conf             689999999998600998888717777999674999999999861-89729998159420110-3979999598897834
Q 000856          506 GGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETG  583 (1252)
Q Consensus       506 gGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g  583 (1252)
                      ||||||++||||+..+|+++||||||++||+.+...+++.++++. +|+|+++|||+++.+.. ||+|++|++|+++.+|
T Consensus       153 gG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g  232 (254)
T d1g6ha_         153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG  232 (254)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEE
T ss_conf             18888999999997592723243976569999999999999999978998999947699999869999999699899996


Q ss_pred             CHHHHHHC
Q ss_conf             95789750
Q 000856          584 THEELIAK  591 (1252)
Q Consensus       584 ~~~~l~~~  591 (1252)
                      +++|+.++
T Consensus       233 ~~~e~~~~  240 (254)
T d1g6ha_         233 RGEEEIKN  240 (254)
T ss_dssp             ESHHHHHH
T ss_pred             CHHHHHHC
T ss_conf             68998654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=8.2e-43  Score=344.24  Aligned_cols=216  Identities=30%  Similarity=0.478  Sum_probs=181.5

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCC--------
Q ss_conf             089996889889999974301203886089899998589981899999995146799858988993166778--------
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQ--------  435 (1252)
Q Consensus       364 ~i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~--------  435 (1252)
                      .|+++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+        
T Consensus         2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~   78 (258)
T d1b0ua_           2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV   78 (258)
T ss_dssp             CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred             EEEEEEEEEEECC---EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCC
T ss_conf             6999978999899---9988150668869979999989998299999999747667899779999993367752000023


Q ss_pred             -----HHHHHHHCEEECCCCCCCHH-CHHHHHHCCC---CCCCHH----HHHHHHHHHCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             -----89883201477367877611-1999971599---999999----9999999953799885099975441259999
Q 000856          436 -----LRWLRDQIGLVNQEPALFAT-TILENILYGK---PEATMA----EVEAAASAANAHSFITLLPNGYSTQVGERGV  502 (1252)
Q Consensus       436 -----~~~~~~~i~~v~Q~~~l~~~-ti~~Ni~~~~---~~~~~~----~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~  502 (1252)
                           ...+|++++||+|+|.+|+. |+.||+.++.   ......    ++.++++.+++.+..          ......
T Consensus        79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~p~  148 (258)
T d1b0ua_          79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPV  148 (258)
T ss_dssp             SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGG
T ss_pred             CCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH----------HCCCCC
T ss_conf             5176799974544899833231411010213656578762999899999999999982995244----------306822


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCHHC-CCEEEEEECCEEE
Q ss_conf             889689999999998600998888717777999674999999999861-89729998159420110-3979999598897
Q 000856          503 QLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVV  580 (1252)
Q Consensus       503 ~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~  580 (1252)
                      .|||||+||++||||+..+|+++||||||++||+.+...+.+.++++. +|+|+|+|||++..+.. ||||++|++|+|+
T Consensus       149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv  228 (258)
T d1b0ua_         149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE  228 (258)
T ss_dssp             GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEE
T ss_conf             05677888989999984399878852455568878888998765541036883389948999999869999999799999


Q ss_pred             EECCHHHHHHCC
Q ss_conf             834957897503
Q 000856          581 ETGTHEELIAKA  592 (1252)
Q Consensus       581 ~~g~~~~l~~~~  592 (1252)
                      +.|+++|++.+.
T Consensus       229 ~~g~~~ev~~~P  240 (258)
T d1b0ua_         229 EEGDPEQVFGNP  240 (258)
T ss_dssp             EEECHHHHHHSC
T ss_pred             EECCHHHHHHCC
T ss_conf             984999998389

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=9e-42  Score=336.18  Aligned_cols=220  Identities=24%  Similarity=0.401  Sum_probs=182.7

Q ss_pred             CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHH-H
Q ss_conf             408999688988999997430120388608989999858998189999999514679985898899316677889883-2
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLR-D  441 (1252)
Q Consensus       363 ~~i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~-~  441 (1252)
                      .-|+++|++++|++   ..+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+....+ .
T Consensus         5 ~~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~   81 (240)
T d1ji0a_           5 IVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM   81 (240)
T ss_dssp             EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred             EEEEEEEEEEEECC---EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf             07999618999899---888830257888997999999999859999999967888880389842443446608888874


Q ss_pred             HCEEECCCCCCCHH-CHHHHHHCCCCCC-CHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             01477367877611-1999971599999-999999999995379988509997544125999988968999999999860
Q 000856          442 QIGLVNQEPALFAT-TILENILYGKPEA-TMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       442 ~i~~v~Q~~~l~~~-ti~~Ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal~  519 (1252)
                      .++|+||++.+|+. |++||+.++.... ..+...+.....  .+...    ++..........||||||||++||||++
T Consensus        82 gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~LSGG~~Qrv~iAraL~  155 (240)
T d1ji0a_          82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI--FSLFP----RLKERLKQLGGTLSGGEQQMLAIGRALM  155 (240)
T ss_dssp             TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH--HHHCH----HHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHH----CHHHHHHCCHHHCCHHHHHHHHHHHHHH
T ss_conf             23556765545776369999998887327888999999999--98741----7688875854338999999999999998


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCHHC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf             0998888717777999674999999999861-89729998159420110-397999959889783495789750
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       520 ~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      .+|++|+|||||++||+.+...+++.++++. +|+|+|++||++..+.. ||+|++|++|++++.|+++|+.++
T Consensus       156 ~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~  229 (240)
T d1ji0a_         156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN  229 (240)
T ss_dssp             TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred             HCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf             29987400398867999999999999999996899899995889999996999999989999998489998429

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.5e-41  Score=330.73  Aligned_cols=218  Identities=26%  Similarity=0.413  Sum_probs=186.0

Q ss_pred             CCEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHH
Q ss_conf             40899968898899999743012038860898999985899818999999951467998589889931667788988320
Q 000856          363 GNIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQ  442 (1252)
Q Consensus       363 ~~i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~  442 (1252)
                      |.|+++|++++|++   ..+|+|+||++++||.++|+||||||||||+++|.|++.|++|+|.++|.|+.+. ....|+.
T Consensus         1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~   76 (238)
T d1vpla_           1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKL   76 (238)
T ss_dssp             CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTT
T ss_pred             CCEEEEEEEEEECC---EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCC-HHHHHHH
T ss_conf             97899958999999---9998062568848979999999999999999999669887888799986724468-3988721


Q ss_pred             CEEECCCCCCCHH-CHHHHHHCCCC--CCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             1477367877611-19999715999--99999999999995379988509997544125999988968999999999860
Q 000856          443 IGLVNQEPALFAT-TILENILYGKP--EATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML  519 (1252)
Q Consensus       443 i~~v~Q~~~l~~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal~  519 (1252)
                      ++||||++.+|.. |+.||+.+...  .....++.+..+..     ++.+  |+..........||||||||++||||++
T Consensus        77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~  149 (238)
T d1vpla_          77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM  149 (238)
T ss_dssp             EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHHC--CCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             86750015468786677888989986179989999999999-----9867--9788885045337998989999999986


Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCHHC-CCEEEEEECCEEEEECCHHHHHHC
Q ss_conf             0998888717777999674999999999861-89729998159420110-397999959889783495789750
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAK  591 (1252)
Q Consensus       520 ~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~  591 (1252)
                      .+|++++|||||++||+.+...+++.++++. +|+|+|++||+++.+.. ||+|++|++|+++..|+++++.++
T Consensus       150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~  223 (238)
T d1vpla_         150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER  223 (238)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf             59998873379889798999999999999996599899995989999996999999989999999289999865

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=5.7e-40  Score=322.18  Aligned_cols=212  Identities=30%  Similarity=0.477  Sum_probs=178.1

Q ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCE
Q ss_conf             89996889889999974301203886089899998589981899999995146799858988993166778898832014
Q 000856          365 IEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIG  444 (1252)
Q Consensus       365 i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~  444 (1252)
                      +++ ++..+|++   . .+ |+||++. ++.++|+||||||||||+++|.|+++|++|+|.++|.++..++..  |++++
T Consensus         3 l~v-~~~k~~g~---~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig   73 (240)
T d2onka1           3 LKV-RAEKRLGN---F-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG   73 (240)
T ss_dssp             EEE-EEEEEETT---E-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred             EEE-EEEEEECC---E-EE-EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHH--HCCCE
T ss_conf             999-99999899---9-99-9999749-979999979998099999999739998962899999998869989--92852


Q ss_pred             EECCCCCCCHH-CHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             77367877611-19999715999999999999999953799885099975441259999889689999999998600998
Q 000856          445 LVNQEPALFAT-TILENILYGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPK  523 (1252)
Q Consensus       445 ~v~Q~~~l~~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal~~~~~  523 (1252)
                      ||+|++.+|+. ||+||+.++.......+..+.     +.+.++.+  |+..........||||||||++||||++.+|+
T Consensus        74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~  146 (240)
T d2onka1          74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR  146 (240)
T ss_dssp             CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             EECCCHHHCCCCHHHHHHHHHHCCCCHHHHHHH-----HHHHHHHC--CCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCC
T ss_conf             252314435220155766653233677889999-----99999863--83756657944489999899999877751677


Q ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEECCCCCCHHC-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf             8887177779996749999999998618--9729998159420110-3979999598897834957897503
Q 000856          524 ILLLDEATSALDAGSESIVQEALDRLMV--GRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       524 ililDe~ts~lD~~~~~~i~~~l~~~~~--~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                      +++|||||++||+.+...+++.++++.+  +.|+|++||++..+.. ||+|++|++|++++.|+++|+++..
T Consensus       147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~  218 (240)
T d2onka1         147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK  218 (240)
T ss_dssp             SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred             CEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEEECHHHHHCCC
T ss_conf             067528655588799999999999998743976999818999999969999999899999990699983299

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.4e-40  Score=321.80  Aligned_cols=209  Identities=24%  Similarity=0.393  Sum_probs=182.4

Q ss_pred             CEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf             19999589988998884420002699837959999849999868899998523779975699899316899978873220
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      -++++||+.+|       +|+|+||+|++||.+||+||||||||||+++|.|++ |++|+|.++|.|+...+...++...
T Consensus         3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~   74 (231)
T d1l7vc_           3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR   74 (231)
T ss_dssp             EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred             EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf             99998741571-------555888899489899999899980999999994887-9955999999999869989998640


Q ss_pred             EEECCCCC-CCCCCHHHHHCCCCCCCC-HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf             88804665-575558888522999999-999999999807212586089867885689999889259999999999713-
Q 000856         1089 GLVQQEPA-LFAASIFDNIAYGKEGAT-EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLK- 1165 (1252)
Q Consensus      1089 ~~V~Q~~~-LF~gTIreNL~~g~~~~s-d~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARALl~- 1165 (1252)
                      ++++|+.. .|..++.+|+.++..... .+.+.++++..++.++..           .....||||||||++||||+++ 
T Consensus        75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~LSgG~~Qrv~iA~al~~~  143 (231)
T d1l7vc_          75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQI  143 (231)
T ss_dssp             EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTT-----------SBGGGCCHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHC-----------CCHHHCCHHHHHHHHHHHHHHHH
T ss_conf             2451213577442098876410014668999999998659876767-----------68445699889999999999851


Q ss_pred             ------CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHH-CCCEEEEEECCEEEEECCHHHHHCC
Q ss_conf             ------999899826678999897999999999871-8975999814923653-0698999949779881492466209
Q 000856         1166 ------NPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIR-GVDCIGVVQDGRIVEQGSHSELVSR 1236 (1252)
Q Consensus      1166 ------~p~ILiLDEpTSaLD~~te~~i~~~l~~~~-~~~TvI~IsHrl~ti~-~~D~I~vl~~G~ive~G~~~eLl~~ 1236 (1252)
                            +|+|+||||||++||+.+...+++.++++. +++|+|+++|+++.+. .||||++|++|++++.|+++|+++.
T Consensus       144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~  222 (231)
T d1l7vc_         144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP  222 (231)
T ss_dssp             CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred             CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCC
T ss_conf             7133899889997187777898999999999999986799999996779999997999999979989998899998188

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.2e-37  Score=299.92  Aligned_cols=210  Identities=23%  Similarity=0.364  Sum_probs=180.6

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
Q ss_conf             08999688988999997430120388608989999858998189999999514679985898899316677889883201
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      -++++||+++|       .|+++||++++||.++|+||||||||||+++|.|++ |++|+|.++|.++...+...++...
T Consensus         3 il~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~   74 (231)
T d1l7vc_           3 VMQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR   74 (231)
T ss_dssp             EEEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred             EEEEECCCCCC-------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHC
T ss_conf             99998741571-------555888899489899999899980999999994887-9955999999999869989998640


Q ss_pred             EEECCCCCC-CHHCHHHHHHCCCCCCC-HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-
Q ss_conf             477367877-61119999715999999-999999999953799885099975441259999889689999999998600-
Q 000856          444 GLVNQEPAL-FATTILENILYGKPEAT-MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLK-  520 (1252)
Q Consensus       444 ~~v~Q~~~l-~~~ti~~Ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal~~-  520 (1252)
                      +|++|+... |..++.+++.++..... .+.+.++++..           +++..++....+||||||||++||||++. 
T Consensus        75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~  143 (231)
T d1l7vc_          75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQI  143 (231)
T ss_dssp             EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHT-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHC-----------CCHHHHCCCHHHCCHHHHHHHHHHHHHHHH
T ss_conf             245121357744209887641001466899999999865-----------987676768445699889999999999851


Q ss_pred             ------CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCHHC-CCEEEEEECCEEEEECCHHHHHHCC
Q ss_conf             ------998888717777999674999999999861-89729998159420110-3979999598897834957897503
Q 000856          521 ------NPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRN-VDTVAVIQQGQVVETGTHEELIAKA  592 (1252)
Q Consensus       521 ------~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~  592 (1252)
                            +|+++||||||++||+.+...+.+.++++. +|+|+|++||++..+.. ||+|++|++|++++.|+++|++...
T Consensus       144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~  223 (231)
T d1l7vc_         144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP  223 (231)
T ss_dssp             CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHH
T ss_pred             CCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHCCH
T ss_conf             71338998899971877778989999999999999867999999967799999979999999799899988999981886

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=5.7e-37  Score=298.89  Aligned_cols=191  Identities=21%  Similarity=0.401  Sum_probs=160.1

Q ss_pred             CEEEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf             19999589988998884420002699837959999849999868899998523779975699899316899978873220
Q 000856         1009 EIELRHVDFAYPSRPDVVVFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1009 ~I~~~nVsf~Y~~~~~~~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .|+++|++++|.    .++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+     +|.++
T Consensus         2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i   72 (200)
T d1sgwa_           2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI   72 (200)
T ss_dssp             EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred             EEEEEEEEEEEC----CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCE
T ss_conf             599998999939----928842088985998999999999719999999966205677889999896267-----36708


Q ss_pred             EEECCCCCCCC-CCHHHHHCCC----CCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             88804665575-5588885229----999999999999998072125860898678856899998892599999999997
Q 000856         1089 GLVQQEPALFA-ASIFDNIAYG----KEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV 1163 (1252)
Q Consensus      1089 ~~V~Q~~~LF~-gTIreNL~~g----~~~~sd~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARAL 1163 (1252)
                      +|+||++.++. -|+.+|+...    ....+++++.++++..++.+        ++..++    .||||||||++||||+
T Consensus        73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~----~LSgG~~qrv~ia~al  140 (200)
T d1sgwa_          73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LKKKLG----ELSQGTIRRVQLASTL  140 (200)
T ss_dssp             EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TTSBGG----GSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--------CCCCCC----CCCCCHHHHHHHHHHH
T ss_conf             9995013578882899999999975488637999999998748856--------301268----6897188889999988


Q ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEEC
Q ss_conf             1399989982667899989799999999987189759998149236530698999949
Q 000856         1164 LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQD 1221 (1252)
Q Consensus      1164 l~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~~~~TvI~IsHrl~ti~~~D~I~vl~~ 1221 (1252)
                      +++|+++||||||++||++++..+++.+.+..+++++++|+|+- .+..||++.+|..
T Consensus       141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~  197 (200)
T d1sgwa_         141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK  197 (200)
T ss_dssp             TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred             HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC-HHHHCCHHHHEEE
T ss_conf             64998999868620169999999999999998679999999916-2544161234010

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=3.7e-34  Score=277.10  Aligned_cols=191  Identities=19%  Similarity=0.364  Sum_probs=154.3

Q ss_pred             CEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
Q ss_conf             08999688988999997430120388608989999858998189999999514679985898899316677889883201
Q 000856          364 NIEFKNVTFSYPSRPDVIIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       364 ~i~~~~v~f~y~~~~~~~~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .|+++|++|+|+ +   ++|+|+||++++|+.++|+||||||||||+++|+|+++|++|+|.++|.++..     .+.++
T Consensus         2 ~lev~~ls~~y~-~---~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i   72 (200)
T d1sgwa_           2 KLEIRDLSVGYD-K---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI   72 (200)
T ss_dssp             EEEEEEEEEESS-S---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred             EEEEEEEEEEEC-C---EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHH-----HCCCE
T ss_conf             599998999939-9---28842088985998999999999719999999966205677889999896267-----36708


Q ss_pred             EEECCCCCCCHH-CHHHHHHCC----CCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             477367877611-199997159----999999999999999537998850999754412599998896899999999986
Q 000856          444 GLVNQEPALFAT-TILENILYG----KPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAM  518 (1252)
Q Consensus       444 ~~v~Q~~~l~~~-ti~~Ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal  518 (1252)
                      +|+||++.++.. |+.+|+.+.    ....+.+++.++++...+      +  +++.    +...||||||||++||||+
T Consensus        73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~------~--~~~~----~~~~LSgG~~qrv~ia~al  140 (200)
T d1sgwa_          73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV------L--DLKK----KLGELSQGTIRRVQLASTL  140 (200)
T ss_dssp             EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTC------C--CTTS----BGGGSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC------C--CCCC----CCCCCCCCHHHHHHHHHHH
T ss_conf             99950135788828999999999754886379999999987488------5--6301----2686897188889999988


Q ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHCCCEEEEEEC
Q ss_conf             0099888871777799967499999999986189729998159420110397999959
Q 000856          519 LKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAVIQQ  576 (1252)
Q Consensus       519 ~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~l~~  576 (1252)
                      +.+|+++||||||++||+.+++.+++.+.++.+++++++++|+ +.+..||.+.+|.+
T Consensus       141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~-~~l~~~D~~~~l~~  197 (200)
T d1sgwa_         141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK  197 (200)
T ss_dssp             TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred             HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE-CHHHHCCHHHHEEE
T ss_conf             6499899986862016999999999999999867999999991-62544161234010

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=7.2e-29  Score=236.01  Aligned_cols=317  Identities=16%  Similarity=0.223  Sum_probs=283.5

Q ss_pred             CHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00899877120145899999999999988678899999999973011588742443689999999999999999999999
Q 000856           24 LPFFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTDIHKMTHEVCKYALYFVYLGLIVCFSSYA  103 (1252)
Q Consensus        24 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~  103 (1252)
                      +.++++++|.+++++ .++++.++.++.++..+..+++++.++|...... +    .+.....++.++++.++..++.++
T Consensus         2 k~~krl~~~~~~~k~-~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~-~----~~~l~~~~~~~~~~~~~~~i~~~~   75 (319)
T d3b60a2           2 QTFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT-D----RSVLLWMPLVVIGLMILRGITSYI   75 (319)
T ss_dssp             HHHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST-T----HHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-C----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             689999999999999-9999999999999999999999999999874468-7----789999999999999976453354


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999982990113024780258999993499999999999999998999999999999989
Q 000856          104 EIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVS  183 (1252)
Q Consensus       104 ~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~  183 (1252)
                      +.++..+.+.++..++|.+++++++++|+++|+++ ++|++++++++|++.+.+.+.......+..+..+++.++.++.+
T Consensus        76 ~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  154 (319)
T d3b60a2          76 SSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY  154 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             66544343100011000477776501011110233-32211111212121000011111200112334456688888765


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             69999999999999999999999999899999999999999999999816999999713699999999999999999999
Q 000856          184 AWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYK  263 (1252)
Q Consensus       184 ~~~lali~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  263 (1252)
                      +|.+++++++.+|+..++.....++..+..++.++..++.++.+.|.+.|++++|++++|+.+.+++++..++..+...+
T Consensus       155 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  234 (319)
T d3b60a2         155 SWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMK  234 (319)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             20021025668999999887666687787898876445677887776248723531110102456666653135677888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999887899999999999999999999997086598899999999999889899989999999999999999999970
Q 000856          264 AGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIK  343 (1252)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~  343 (1252)
                      ..+..+...+...+......++++++|++++.+|.++.|++++++.+......|+..+...+..++++.++.+|+.+++|
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld  314 (319)
T d3b60a2         235 MVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILD  314 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             88777740640100000023799999999998099789999999999999999999999999999999999999999966


Q ss_pred             CCCC
Q ss_conf             2998
Q 000856          344 QKPS  347 (1252)
Q Consensus       344 ~~~~  347 (1252)
                      .|||
T Consensus       315 ~~~E  318 (319)
T d3b60a2         315 SEQE  318 (319)
T ss_dssp             SCCS
T ss_pred             CCCC
T ss_conf             9989

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=6.3e-29  Score=236.43  Aligned_cols=320  Identities=13%  Similarity=0.135  Sum_probs=275.9

Q ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89987712014589999999999998867889999999997301158874-2-443689999999999999999999999
Q 000856           26 FFQLFSFADKYDWCLMIFGSLGAVIHGSSMPVFFLLFGEMVNGFGKNQTD-I-HKMTHEVCKYALYFVYLGLIVCFSSYA  103 (1252)
Q Consensus        26 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~i~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~i~~~~~~~~  103 (1252)
                      ++++++|.++++|. ++...++.++.++.....+++++.++|.+...... . ..........+..+++..++..++.+.
T Consensus         2 lKrl~~~~k~~k~~-~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   80 (323)
T d2hyda2           2 IKRYLQFVKPYKYR-IFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI   80 (323)
T ss_dssp             HHHHHHHHGGGHHH-HHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999-99999999999999999999999999998626774215568999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999982990113024780258999993499999999999999998999999999999989
Q 000856          104 EIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVS  183 (1252)
Q Consensus       104 ~~~~~~~~~~~~~~~lR~~~~~~i~~~~~~~~~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~i~~~~~  183 (1252)
                      +.++..+.+.++..++|.+++++++++|+++|+++ ++|++++++++|++.+++.+...+...+..+..+++.++.++.+
T Consensus        81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~  159 (323)
T d2hyda2          81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL  159 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             99999999985567788887665402332100012-22110001111332100111345420111466533465440000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             69999999999999999999999999899999999999999999999816999999713699999999999999999999
Q 000856          184 AWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYK  263 (1252)
Q Consensus       184 ~~~lali~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~  263 (1252)
                      +|.++++.++..|+..++...+.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+
T Consensus       160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k  239 (323)
T d2hyda2         160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK  239 (323)
T ss_dssp             CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf             14688899998877777776412333202677898999999787887559702346764111002330223111101567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999887899999999999999999999997086598899999999999889899989999999999999999999970
Q 000856          264 AGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGVTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIK  343 (1252)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~  343 (1252)
                      ..+...........+..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..++++.++.+|+.+++|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd  319 (323)
T d2hyda2         240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID  319 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             76520000111110120558999999999998499889999999999999999999999999999999999999999977


Q ss_pred             CCCC
Q ss_conf             2998
Q 000856          344 QKPS  347 (1252)
Q Consensus       344 ~~~~  347 (1252)
                      +|||
T Consensus       320 ~e~e  323 (323)
T d2hyda2         320 EDYD  323 (323)
T ss_dssp             CCCS
T ss_pred             CCCC
T ss_conf             9998

>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=1.1e-22  Score=188.10  Aligned_cols=317  Identities=15%  Similarity=0.224  Sum_probs=278.0

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             58999977609925799999999999998889999999999999840497113342689999999999999999999999
Q 000856          671 GYFLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKEFVFIYIGAGLYAVVAYLIQHY  750 (1252)
Q Consensus       671 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  750 (1252)
                      ..+++++++.++.++.+..+.+..++.++.....++.++..++......+   ......+...++++.+...++.+...+
T Consensus         2 k~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~l~~~~~~~~~~~~~~~i~~~~~~~   78 (319)
T d3b60a2           2 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD---RSVLLWMPLVVIGLMILRGITSYISSY   78 (319)
T ss_dssp             HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT---HHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             68999999999999999999999999999999999999999998744687---789999999999999976453354665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999983897754446777379999996319999999998899999999999999999999977
Q 000856          751 FFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIVEW  830 (1252)
Q Consensus       751 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~~~g~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  830 (1252)
                      ...+.+.+...++|.++++++++.|.+||+.  +++|++++++++|++.+...+...+...+..++.+++.+++++..+|
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  156 (319)
T d3b60a2          79 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW  156 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCSTHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCCCHHHHHHHHHCCCCHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf             4434310001100047777650101111023--33221111121212100001111120011233445668888876520


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999998833889999999999999999862279999715389999999999976999999999
Q 000856          831 RVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLRRS  910 (1252)
Q Consensus       831 ~l~li~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~~~~~~~~~~~~~~~~~~~~~~~~  910 (1252)
                      .+++++++..|+..+......+...+..++..+...+......|.++|++++|+++.|+.+.+++.+..++..+...+..
T Consensus       157 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~  236 (319)
T d3b60a2         157 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV  236 (319)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             02102566899999988766668778789887644567788777624872353111010245666665313567788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999999999999999999999817879899999999999999999999997999999899999999984356
Q 000856          911 LTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLDRS  990 (1252)
Q Consensus       911 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~~~  990 (1252)
                      ...........+......++++++|..++..|.++.|++++++.+......|+..+.....++.++..+.+|+.+.+|.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~  316 (319)
T d3b60a2         237 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE  316 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             77774064010000002379999999999809978999999999999999999999999999999999999999996699


Q ss_pred             CC
Q ss_conf             88
Q 000856          991 TR  992 (1252)
Q Consensus       991 ~~  992 (1252)
                      +|
T Consensus       317 ~E  318 (319)
T d3b60a2         317 QE  318 (319)
T ss_dssp             CS
T ss_pred             CC
T ss_conf             89

>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.94  E-value=1.5e-22  Score=186.87  Aligned_cols=317  Identities=13%  Similarity=0.162  Sum_probs=270.9

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q ss_conf             999977609925799999999999998889999999999999840497113342689----9999999999999999999
Q 000856          673 FLRLLKLNAPEWPYSIMGAIGSVLSGFIGPTFAIVMACMIEVFYYRNPASMERKTKE----FVFIYIGAGLYAVVAYLIQ  748 (1252)
Q Consensus       673 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  748 (1252)
                      +++++++.++.++.+....+..++.+......++..+.++|................    ....++.+.+...++.+..
T Consensus         2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (323)
T d2hyda2           2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR   81 (323)
T ss_dssp             HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999999999999999999999999999999999986267742155689999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999838977544467773799999963199999999988999999999999999999999
Q 000856          749 HYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIADRISVILQNMTSLLTSFIVAFIV  828 (1252)
Q Consensus       749 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~~~g~l~~rl~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~  828 (1252)
                      .+...+.+.+...++|.++++++++.|.+||++  +++|++++|+++|++.+...+...+...+..++.++..+++++..
T Consensus        82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~  159 (323)
T d2hyda2          82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL  159 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT--SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf             999999998556778888766540233210001--222110001111332100111345420111466533465440000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             77999999999999999999999988338899999999999999998622799997153899999999999769999999
Q 000856          829 EWRVSLLILGTYPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKILSLFCHELRVPQSQTLR  908 (1252)
Q Consensus       829 ~~~l~li~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ika~~~~~~~~~~~~~~~~~~~~~~~~  908 (1252)
                      +|.++++.++..|+..+......+..++..++..+..++..+.+.|.++|+++||+++.++.+.+++.+..++..+...+
T Consensus       160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k  239 (323)
T d2hyda2         160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK  239 (323)
T ss_dssp             CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCHHHH
T ss_conf             14688899998877777776412333202677898999999787887559702346764111002330223111101567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999999999999999999998178798999999999999999999999979999998999999999843
Q 000856          909 RSLTAGILFGISQFALHASEALILWYGVHLVGKGVSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESVGSVFSTLD  988 (1252)
Q Consensus       909 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~l~  988 (1252)
                      .................+...+++++|..++.+|.++.|.++.+..+......|+..+.....++.++..+.+|+.+.+|
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd  319 (323)
T d2hyda2         240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID  319 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             76520000111110120558999999999998499889999999999999999999999999999999999999999977


Q ss_pred             CCC
Q ss_conf             568
Q 000856          989 RST  991 (1252)
Q Consensus       989 ~~~  991 (1252)
                      +++
T Consensus       320 ~e~  322 (323)
T d2hyda2         320 EDY  322 (323)
T ss_dssp             CCC
T ss_pred             CCC
T ss_conf             999

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.58  E-value=6.8e-17  Score=143.04  Aligned_cols=171  Identities=12%  Similarity=0.046  Sum_probs=117.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf             99998499998688999985237799756998993168999788732208880466557555888852299999999999
Q 000856         1040 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVV 1119 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNL~~g~~~~sd~~i~ 1119 (1252)
                      +++|+||+|||||||++.++|++++..|.+..++.+....+...........++...++..+..++...+......+.  
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   79 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY--   79 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHH--
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH--
T ss_conf             899998999389999999981488886469987713288887653112336677788754113455443023037625--


Q ss_pred             HHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CC
Q ss_conf             9999807212586089867885689999889259999999999713999899826678999897999999999871--89
Q 000856         1120 EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLM--RG 1197 (1252)
Q Consensus      1120 ~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARALl~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~--~~ 1197 (1252)
                                                 ..+|+|++|+.++++++.++|+++++|||+...+.  .....+.+.+..  .+
T Consensus        80 ---------------------------~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~  130 (178)
T d1ye8a1          80 ---------------------------FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPN  130 (178)
T ss_dssp             ---------------------------HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTT
T ss_pred             ---------------------------HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH--HHHHHHHHHHHHCCCC
T ss_conf             ---------------------------66532013789999997409974230277731004--5799999998750579


Q ss_pred             CEEEEEECCCHHHHCCCEEEEEECCEEEEECCHHHHHCCCCCHHHHHHH
Q ss_conf             7599981492365306989999497798814924662099853599997
Q 000856         1198 RTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELVSRPDGAYSRLLQ 1246 (1252)
Q Consensus      1198 ~TvI~IsHrl~ti~~~D~I~vl~~G~ive~G~~~eLl~~~~g~y~~l~~ 1246 (1252)
                      +|+|+++|+......+|++..+++|++++.+..    ++ +..+.+.+.
T Consensus       131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~----nr-d~~~~~i~~  174 (178)
T d1ye8a1         131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE----NR-DVILEDILS  174 (178)
T ss_dssp             SEEEEECCSSCCSHHHHHHHTCTTCEEEECCTT----TT-TTHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHCEEEEEECCEEEEECCC----CH-HHHHHHHHH
T ss_conf             789999744778986365998719999998996----47-889999999

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.44  E-value=3.2e-15  Score=130.09  Aligned_cols=159  Identities=15%  Similarity=0.080  Sum_probs=104.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCEEECCCCCCCHHCHHHHHHCCCCCCCHHHHH
Q ss_conf             99998589981899999995146799858988993166778898832014773678776111999971599999999999
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVE  474 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~  474 (1252)
                      +++|+||+|||||||++.++|.+++..|.+..++.+.................+...++......+...++.        
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------   73 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSY--------   73 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTE--------
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf             899998999389999999981488886469987713288887653112336677788754113455443023--------


Q ss_pred             HHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CC
Q ss_conf             9999953799885099975441259999889689999999998600998888717777999674999999999861--89
Q 000856          475 AAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM--VG  552 (1252)
Q Consensus       475 ~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~--~~  552 (1252)
                                       +.+.    ....+++|+++|.+++++...+|+++++|||....+ .. ..+.+.+.+..  .+
T Consensus        74 -----------------~~~~----~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~-~~-~~~~~~l~~~l~~~~  130 (178)
T d1ye8a1          74 -----------------GVNV----QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL-FS-KKFRDLVRQIMHDPN  130 (178)
T ss_dssp             -----------------EECH----HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG-GC-HHHHHHHHHHHTCTT
T ss_pred             -----------------HCCC----CHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH-HH-HHHHHHHHHHHCCCC
T ss_conf             -----------------0376----256653201378999999740997423027773100-45-799999998750579


Q ss_pred             CEEEEECCCCCCHHCCCEEEEEECCEEEEECC
Q ss_conf             72999815942011039799995988978349
Q 000856          553 RTTVVVAHRLSTIRNVDTVAVIQQGQVVETGT  584 (1252)
Q Consensus       553 ~t~i~ith~~~~~~~~d~i~~l~~G~i~~~g~  584 (1252)
                      .++|+++|+......+|++..+++|++++-+.
T Consensus       131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~  162 (178)
T d1ye8a1         131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP  162 (178)
T ss_dssp             SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred             CEEEEEECCHHHHHHHCEEEEEECCEEEEECC
T ss_conf             78999974477898636599871999999899

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.34  E-value=3.1e-11  Score=99.13  Aligned_cols=72  Identities=22%  Similarity=0.279  Sum_probs=61.9

Q ss_pred             CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCCHHHHCCCEEEEE
Q ss_conf             8892599999999997----13999899826678999897999999999871-897599981492365306989999
Q 000856         1148 QLSGGQKQRIAIARAV----LKNPAILLLDEATSALDAESECVLQEALERLM-RGRTTVLVAHRLSTIRGVDCIGVV 1219 (1252)
Q Consensus      1148 ~LSgGQkQRlalARAL----l~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~-~~~TvI~IsHrl~ti~~~D~I~vl 1219 (1252)
                      .+|||||.++++|-.+    ..++|+++||||+++||+.....+.+.|.+.. .++-+|+|||++.++..+|+++..
T Consensus       332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V  408 (427)
T d1w1wa_         332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV  408 (427)
T ss_dssp             GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf             32230479999999999954799977999688777899999999999999728998899995878999736617999

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=3.2e-10  Score=91.17  Aligned_cols=73  Identities=22%  Similarity=0.295  Sum_probs=61.8

Q ss_pred             CCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCHHCCCEEEEE
Q ss_conf             98896899999999986----00998888717777999674999999999861-897299981594201103979999
Q 000856          502 VQLSGGQKQRIAIARAM----LKNPKILLLDEATSALDAGSESIVQEALDRLM-VGRTTVVVAHRLSTIRNVDTVAVI  574 (1252)
Q Consensus       502 ~~LSgGqkqrialARal----~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~-~~~t~i~ith~~~~~~~~d~i~~l  574 (1252)
                      ..||||||.++++|-.+    ..++|+++||||+++||+.....+.+.|.++. .+.-+|++||++.....+|+++.+
T Consensus       331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V  408 (427)
T d1w1wa_         331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV  408 (427)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEE
T ss_conf             332230479999999999954799977999688777899999999999999728998899995878999736617999

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.24  E-value=2e-10  Score=92.81  Aligned_cols=75  Identities=23%  Similarity=0.350  Sum_probs=64.4

Q ss_pred             CCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEEEE--EEC
Q ss_conf             8892599999999997----1399989982667899989799999999987189759998149236530698999--949
Q 000856         1148 QLSGGQKQRIAIARAV----LKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGV--VQD 1221 (1252)
Q Consensus      1148 ~LSgGQkQRlalARAL----l~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~~~~TvI~IsHrl~ti~~~D~I~v--l~~ 1221 (1252)
                      .+|+|||+.+.++..+    ..+++++++|||-++|++.....+.+.|++..++.-+|++||++..+..+|+++.  +++
T Consensus       219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~  298 (308)
T d1e69a_         219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVN  298 (308)
T ss_dssp             GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEEC
T ss_conf             02577766777776655654226744554320335797899999999998554887999989889997324289999969


Q ss_pred             C
Q ss_conf             7
Q 000856         1222 G 1222 (1252)
Q Consensus      1222 G 1222 (1252)
                      |
T Consensus       299 g  299 (308)
T d1e69a_         299 G  299 (308)
T ss_dssp             S
T ss_pred             C
T ss_conf             9

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=3e-09  Score=83.65  Aligned_cols=76  Identities=24%  Similarity=0.304  Sum_probs=65.4

Q ss_pred             CCCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHCCCEEEE--EE
Q ss_conf             9889689999999998----60099888871777799967499999999986189729998159420110397999--95
Q 000856          502 VQLSGGQKQRIAIARA----MLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTVAV--IQ  575 (1252)
Q Consensus       502 ~~LSgGqkqrialARa----l~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~~~d~i~~--l~  575 (1252)
                      ..+|+|||+...++..    ...++.++++|||-++|++.....+.+.+.+..++.-+|++||++..+..+|+++.  ++
T Consensus       218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~  297 (308)
T d1e69a_         218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV  297 (308)
T ss_dssp             GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHCCCEEEEEEE
T ss_conf             10257776677777665565422674455432033579789999999999855488799998988999732428999996


Q ss_pred             CC
Q ss_conf             98
Q 000856          576 QG  577 (1252)
Q Consensus       576 ~G  577 (1252)
                      +|
T Consensus       298 ~g  299 (308)
T d1e69a_         298 NG  299 (308)
T ss_dssp             SS
T ss_pred             CC
T ss_conf             99

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.83  E-value=0.013  Score=32.23  Aligned_cols=47  Identities=17%  Similarity=0.211  Sum_probs=33.2

Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHH-HHHC-CCCEEEEECCCCCCHH
Q ss_conf             099888871777799967499999999-9861-8972999815942011
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEAL-DRLM-VGRTTVVVAHRLSTIR  566 (1252)
Q Consensus       520 ~~~~ililDe~ts~lD~~~~~~i~~~l-~~~~-~~~t~i~ith~~~~~~  566 (1252)
                      .+..++++||...+=|+.....+..++ ..+. .+..++++||..+...
T Consensus       113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf             9772785545456862332002588888888623761378652023332

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.0057  Score=34.92  Aligned_cols=147  Identities=18%  Similarity=0.220  Sum_probs=63.3

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCEEECCCCCCCHHCHHHHHHCCCCCCC
Q ss_conf             60898999985899818999999951467998589889931667788988320147736787761119999715999999
Q 000856          390 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEAT  469 (1252)
Q Consensus       390 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~  469 (1252)
                      +.+|+.+.|.|++|+|||||+--++--..  .|.=..+.....       ...+.|+.-+..  ...+.+.+.--.....
T Consensus        26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia--~g~~~~~~~~~~-------~~~vl~~~~E~~--~~~~~~Rl~~~~~~~~   94 (274)
T d1nlfa_          26 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELP-------TGPVIYLPAEDP--PTAIHHRLHALGAHLS   94 (274)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCC-------CCCEEEEESSSC--HHHHHHHHHHHHTTSC
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCCCCCCCCCC-------CCCEEEEECCCH--HHHHHHHHHHHHHCCC
T ss_conf             55895899992899989999999999997--699721112357-------873689851234--9999999999862368


Q ss_pred             HHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CHHHHHHHHH
Q ss_conf             99999999995379988509997544125999988968999999999860099888871777799-----9674999999
Q 000856          470 MAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSAL-----DAGSESIVQE  544 (1252)
Q Consensus       470 ~~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal~~~~~ililDe~ts~l-----D~~~~~~i~~  544 (1252)
                      .+.......      .+...+     ..+.......-   ..+.-.+....+++++++|--....     |......+..
T Consensus        95 ~~~~~~~~~------~~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~  160 (274)
T d1nlfa_          95 AEERQAVAD------GLLIQP-----LIGSLPNIMAP---EWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIG  160 (274)
T ss_dssp             HHHHHHHHH------HEEECC-----CTTSCCCTTSH---HHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHH
T ss_pred             HHHHHCCCC------CCEECC-----CCCCCCHHHHH---HHHHHHHHHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHH
T ss_conf             666531233------323214-----56742035789---9999988752676589628135422665232256899998


Q ss_pred             HHHHHC--CCCEEEEECCC
Q ss_conf             999861--89729998159
Q 000856          545 ALDRLM--VGRTTVVVAHR  561 (1252)
Q Consensus       545 ~l~~~~--~~~t~i~ith~  561 (1252)
                      .+..+.  .+++++++.|-
T Consensus       161 ~l~~la~~~~~~vi~v~H~  179 (274)
T d1nlfa_         161 RMEAIAADTGCSIVFLHHA  179 (274)
T ss_dssp             HHHHHHHHHCCEEEEEEEC
T ss_pred             HHHHHHHCCCCCEEHHHHC
T ss_conf             8777764479754013100

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.81  E-value=0.0094  Score=33.22  Aligned_cols=35  Identities=31%  Similarity=0.307  Sum_probs=28.0

Q ss_pred             CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             30120388608989999858998189999999514
Q 000856          382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       382 ~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      -|++..--+.+|+.+.|.|++|+||||++.-+..-
T Consensus        24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf             68887469789808999947999799999999972

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=3.8e-05  Score=51.86  Aligned_cols=161  Identities=11%  Similarity=0.032  Sum_probs=64.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCC------CCC
Q ss_conf             99998499998688999985237799756998993168999788732208880466557555888852299------999
Q 000856         1040 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK------EGA 1113 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNL~~g~------~~~ 1113 (1252)
                      .|.|+||.|+|||||++.+.+.+....+.+.+.+.+........+......+.|+...+.....++.....      ...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVV   82 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             99998899971999999999999977997999984550122211465412343302466543001034441432231100


Q ss_pred             CHHHHHHHHHHCCCHHHHHH-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             99999999998072125860-89867885689999889259999999999713999899826678999897999999999
Q 000856         1114 TEAEVVEAARAANVHGFVSA-LPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALE 1192 (1252)
Q Consensus      1114 sd~~i~~al~~a~l~~~i~~-lp~Gldt~vge~G~~LSgGQkQRlalARALl~~p~ILiLDEpTSaLD~~te~~i~~~l~ 1192 (1252)
                      ..++..... .... +.+.. ...+.+..+.+.....+......+.+.+.++..++++++...+..-+..  ..+.+.+.
T Consensus        83 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  158 (189)
T d2i3ba1          83 DLTSFEQLA-LPVL-RNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP--LALVEEIR  158 (189)
T ss_dssp             CHHHHHTTT-TTTT-CCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC--CTTHHHHH
T ss_pred             CHHHHHHHH-HHHH-HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH--HHHHHHHH
T ss_conf             377777788-9999-9998876218970686143333053599999999985468659996155577556--99999986


Q ss_pred             HHCCCCEEEEEEC
Q ss_conf             8718975999814
Q 000856         1193 RLMRGRTTVLVAH 1205 (1252)
Q Consensus      1193 ~~~~~~TvI~IsH 1205 (1252)
                      + .++.+++.++.
T Consensus       159 ~-~~~~~~~~lt~  170 (189)
T d2i3ba1         159 N-RKDVKVFNVTK  170 (189)
T ss_dssp             T-TCCSEEEECCS
T ss_pred             C-CCCCEEEEECH
T ss_conf             7-89974999786

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.68  E-value=0.001  Score=40.67  Aligned_cols=37  Identities=35%  Similarity=0.568  Sum_probs=27.6

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             6089899998589981899999995146799858988
Q 000856          390 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL  426 (1252)
Q Consensus       390 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~  426 (1252)
                      ++.+..+.|.|++||||||+++.|.++.++..--|.+
T Consensus       163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti  199 (323)
T d1g6oa_         163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  199 (323)
T ss_dssp             HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEC
T ss_conf             9837888999403566257899986530145623311

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.64  E-value=0.0031  Score=36.99  Aligned_cols=175  Identities=15%  Similarity=0.114  Sum_probs=79.3

Q ss_pred             CCEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCCCEEEECCCCCCCCCHHHHHCC-CEEECCCCCCCCCCHH
Q ss_conf             42000269983795999984999986889999852-377997569989931689997887322-0888046655755588
Q 000856         1026 VVFKDFNLRIRAGQSQALVGASGSGKSSVIALIER-FYDPTAGKVMIDGKDIRRLNLKSLRLK-IGLVQQEPALFAASIF 1103 (1252)
Q Consensus      1026 ~vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r-l~~p~~G~I~idG~di~~~~~~~lR~~-i~~V~Q~~~LF~gTIr 1103 (1252)
                      |-|+.+..-+.+|+.+.|.|++|+||||++.-+.. +..-+.-.+.+-..   +.+.+....+ ++...+-+.--..+.+
T Consensus        23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~---E~~~~~~~~r~~~~~~~~~~~~~~~~~   99 (277)
T d1cr2a_          23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML---EESVEETAEDLIGLHNRVRLRQSDSLK   99 (277)
T ss_dssp             TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES---SSCHHHHHHHHHHHHTTCCGGGCHHHH
T ss_pred             HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEE---CCCHHHHHHHHHHHHHCCCCHHHCCCC
T ss_conf             66888746978980899994799979999999997265533663457640---111135776999986458710101222


Q ss_pred             HHHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCCCCC-
Q ss_conf             885229999999999999998072125860898678856899998892599999999997--13999899826678999-
Q 000856         1104 DNIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAV--LKNPAILLLDEATSALD- 1180 (1252)
Q Consensus      1104 eNL~~g~~~~sd~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARAL--l~~p~ILiLDEpTSaLD- 1180 (1252)
                      .+               .++...+.++...+...-....-+........  ..+...+..  -.+|+++++|=-+ .++ 
T Consensus       100 ~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvID~l~-~l~~  161 (277)
T d1cr2a_         100 RE---------------IIENGKFDQWFDELFGNDTFHLYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHIS-IVVS  161 (277)
T ss_dssp             HH---------------HHHTSHHHHHHHHHHSSSCEEEECCC-CCCHH--HHHHHHHHHHHTTCCSEEEEEEEE-C---
T ss_pred             CC---------------HHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH--HHHHHHHHHHHCCCCCEEEECCCC-CCCC
T ss_conf             22---------------14567788898874035214662143310689--999986543213676259970542-1203


Q ss_pred             -----H--HHHHHHHHHHHHHC--CCCEEEEEECCC----------------HHH-------HCCCEEEEEEC
Q ss_conf             -----8--97999999999871--897599981492----------------365-------30698999949
Q 000856         1181 -----A--ESECVLQEALERLM--RGRTTVLVAHRL----------------STI-------RGVDCIGVVQD 1221 (1252)
Q Consensus      1181 -----~--~te~~i~~~l~~~~--~~~TvI~IsHrl----------------~ti-------~~~D~I~vl~~ 1221 (1252)
                           .  +....+.+.++++.  .++++++++|=-                +.+       ..+|.++.+..
T Consensus       162 ~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r  234 (277)
T d1cr2a_         162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER  234 (277)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCEEEEEEE
T ss_conf             4654430677899999999976501655203103563224445543333211212343001503869999984

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.018  Score=31.12  Aligned_cols=46  Identities=15%  Similarity=0.128  Sum_probs=31.6

Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC-C-CCEEEEECCCCCCH
Q ss_conf             09988887177779996749999999-99861-8-97299981594201
Q 000856          520 KNPKILLLDEATSALDAGSESIVQEA-LDRLM-V-GRTTVVVAHRLSTI  565 (1252)
Q Consensus       520 ~~~~ililDe~ts~lD~~~~~~i~~~-l~~~~-~-~~t~i~ith~~~~~  565 (1252)
                      .+..++++||...+=++.....+..+ +..+. + +..+++.||.....
T Consensus       119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~  167 (234)
T d1wb9a2         119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT  167 (234)
T ss_dssp             CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf             4660885322235877456667898764543204544289852468776

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.40  E-value=0.022  Score=30.41  Aligned_cols=154  Identities=16%  Similarity=0.152  Sum_probs=72.4

Q ss_pred             CCCCEEEE--EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCEEECCCCCCCHHCHHH
Q ss_conf             30120388--6089899998589981899999995146799858988993166778898832014773678776111999
Q 000856          382 IFRDFSIF--FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILE  459 (1252)
Q Consensus       382 ~l~~~~l~--i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~  459 (1252)
                      -|+.+ +.  +++|+.+.|.|++|||||+++.-++....-..+.+                   .|+.-+-.  ...+.+
T Consensus        14 ~LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~-------------------~~is~e~~--~~~~~~   71 (242)
T d1tf7a2          14 RLDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERA-------------------ILFAYEES--RAQLLR   71 (242)
T ss_dssp             HHHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCE-------------------EEEESSSC--HHHHHH
T ss_pred             HHHHH-HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCC-------------------CEEECCCC--HHHHHH
T ss_conf             79884-568986984999991899999999999999998723244-------------------11212679--999999


Q ss_pred             HHH-CCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHH
Q ss_conf             971-599999999999999995379988509997544125999988968999999999860-099888871777799967
Q 000856          460 NIL-YGKPEATMAEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAML-KNPKILLLDEATSALDAG  537 (1252)
Q Consensus       460 Ni~-~~~~~~~~~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal~-~~~~ililDe~ts~lD~~  537 (1252)
                      +.. ++.   ..++...               .+.............. +...-.+.+++- .+|++++.|..+..+...
T Consensus        72 ~~~~~~~---~~~~~~~---------------~~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~  132 (242)
T d1tf7a2          72 NAYSWGM---DFEEMER---------------QNLLKIVCAYPESAGL-EDHLQIIKSEINDFKPARIAIDSLSALARGV  132 (242)
T ss_dssp             HHHTTSC---CHHHHHH---------------TTSEEECCCCGGGSCH-HHHHHHHHHHHHTTCCSEEEEECHHHHTSSS
T ss_pred             HHHHCCC---CHHHHHH---------------CCCEEEEEEECCHHHH-HHHHHHHHHHHHHCCCCEEEEECCHHHHCCC
T ss_conf             9998299---8699854---------------5861799730001017-9999999999984088533220431430489


Q ss_pred             HHHHHHHHHH---HH--CCCCEEEEECCCCC----------CHHC-CCEEEEEEC
Q ss_conf             4999999999---86--18972999815942----------0110-397999959
Q 000856          538 SESIVQEALD---RL--MVGRTTVVVAHRLS----------TIRN-VDTVAVIQQ  576 (1252)
Q Consensus       538 ~~~~i~~~l~---~~--~~~~t~i~ith~~~----------~~~~-~d~i~~l~~  576 (1252)
                      +...+.+.+.   ++  ..+.+++++.|...          .+.. +|.|+.++.
T Consensus       133 ~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~  187 (242)
T d1tf7a2         133 SNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY  187 (242)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf             9999999999999999986983999985675125544577640464216999998

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.025  Score=29.98  Aligned_cols=30  Identities=23%  Similarity=0.271  Sum_probs=25.6

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             860898999985899818999999951467
Q 000856          389 FFPAGKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       389 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      .+++...+.+.||+|||||++++.+++.+.
T Consensus        37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf             999887578878998763047788787718

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.31  E-value=0.00096  Score=40.94  Aligned_cols=26  Identities=38%  Similarity=0.500  Sum_probs=21.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             98999985899818999999951467
Q 000856          393 GKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       393 g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      |..+.|+|||||||||+++.|...++
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             74999989999999999999984589

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.23  E-value=0.0021  Score=38.36  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf             898999985899818999999951467998589
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHV  424 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i  424 (1252)
                      +|++++++|+||.|||||++.|.+......|+|
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~v  126 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV  126 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCC
T ss_conf             698089978898778888773053555010684

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.031  Score=29.26  Aligned_cols=29  Identities=28%  Similarity=0.264  Sum_probs=24.3

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             60898999985899818999999951467
Q 000856          390 FPAGKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       390 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      +++...+.+.||+|||||++++.+...+.
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf             99888678668998882289999999829

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.15  E-value=0.031  Score=29.25  Aligned_cols=155  Identities=13%  Similarity=0.065  Sum_probs=71.6

Q ss_pred             CEEEEEE-EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHH
Q ss_conf             2000269-9837959999849999868899998523779975-6998993168999788732208880466557555888
Q 000856         1027 VFKDFNL-RIRAGQSQALVGASGSGKSSVIALIERFYDPTAG-KVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 1104 (1252)
Q Consensus      1027 vL~~isl-~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIre 1104 (1252)
                      -|+.+=- -+++|..+-|.|++||||||++.-+..-.--..+ -+++.-    +.+...++++                 
T Consensus        14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~----e~~~~~~~~~-----------------   72 (242)
T d1tf7a2          14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY----EESRAQLLRN-----------------   72 (242)
T ss_dssp             HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES----SSCHHHHHHH-----------------
T ss_pred             HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEC----CCCHHHHHHH-----------------
T ss_conf             7988456898698499999189999999999999999872324411212----6799999999-----------------


Q ss_pred             HHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCHHH
Q ss_conf             852299999999999999980721258608986788568999988925999999999971-3999899826678999897
Q 000856         1105 NIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVL-KNPAILLLDEATSALDAES 1183 (1252)
Q Consensus      1105 NL~~g~~~~sd~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARALl-~~p~ILiLDEpTSaLD~~t 1183 (1252)
                      --.++   ...++..    ..+...           .......... .+...-.+.+++- .+|++++.|-.++.....+
T Consensus        73 ~~~~~---~~~~~~~----~~~~~~-----------~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~  133 (242)
T d1tf7a2          73 AYSWG---MDFEEME----RQNLLK-----------IVCAYPESAG-LEDHLQIIKSEINDFKPARIAIDSLSALARGVS  133 (242)
T ss_dssp             HHTTS---CCHHHHH----HTTSEE-----------ECCCCGGGSC-HHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSC
T ss_pred             HHHCC---CCHHHHH----HCCCEE-----------EEEEECCHHH-HHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCC
T ss_conf             99829---9869985----458617-----------9973000101-799999999999840885332204314304899


Q ss_pred             HHHHHHHHH---HHC--CCCEEEEEECCCH----------HHH-CCCEEEEEEC
Q ss_conf             999999999---871--8975999814923----------653-0698999949
Q 000856         1184 ECVLQEALE---RLM--RGRTTVLVAHRLS----------TIR-GVDCIGVVQD 1221 (1252)
Q Consensus      1184 e~~i~~~l~---~~~--~~~TvI~IsHrl~----------ti~-~~D~I~vl~~ 1221 (1252)
                      ...+.+.+.   ...  .++|++++.|...          .+. .+|.|+.++.
T Consensus       134 ~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~  187 (242)
T d1tf7a2         134 NNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY  187 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEEE
T ss_conf             999999999999999986983999985675125544577640464216999998

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.10  E-value=0.027  Score=29.73  Aligned_cols=32  Identities=28%  Similarity=0.329  Sum_probs=19.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             89999858998189999999514679985898899
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN  428 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g  428 (1252)
                      +.+.+.|++||||||+++.|....   .|...++.
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~   34 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR   34 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECH
T ss_conf             799998999999999999999957---99799603

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.08  E-value=0.0029  Score=37.24  Aligned_cols=35  Identities=29%  Similarity=0.362  Sum_probs=30.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             79599998499998688999985237799756998
Q 000856         1037 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 1071 (1252)
Q Consensus      1037 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i 1071 (1252)
                      +|++.+++|+||.|||||++.|.+-.....|+|.-
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~  128 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE  128 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC
T ss_conf             69808997889877888877305355501068420

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.033  Score=28.98  Aligned_cols=166  Identities=13%  Similarity=0.155  Sum_probs=75.9

Q ss_pred             CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHH
Q ss_conf             20002699837959999849999868899998523779975699899316899978873220888046655755588885
Q 000856         1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI 1106 (1252)
Q Consensus      1027 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNL 1106 (1252)
                      ++.+    +.+|+.+.|+|++|+||||++.-|.--.  ..|.=..++....       ...+-|+.-|.  ....+.+.+
T Consensus        22 li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~i--a~g~~~~~~~~~~-------~~~vl~~~~E~--~~~~~~~Rl   86 (274)
T d1nlfa_          22 VLPN----MVAGTVGALVSPGGAGKSMLALQLAAQI--AGGPDLLEVGELP-------TGPVIYLPAED--PPTAIHHRL   86 (274)
T ss_dssp             EETT----EETTSEEEEEESTTSSHHHHHHHHHHHH--HTCCCTTCCCCCC-------CCCEEEEESSS--CHHHHHHHH
T ss_pred             HHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHH--HCCCCCCCCCCCC-------CCCEEEEECCC--HHHHHHHHH
T ss_conf             8689----5589589999289998999999999999--7699721112357-------87368985123--499999999


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CH
Q ss_conf             2299999999999999980721258608986788568999988925999999999971399989982667899-----98
Q 000856         1107 AYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSAL-----DA 1181 (1252)
Q Consensus      1107 ~~g~~~~sd~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARALl~~p~ILiLDEpTSaL-----D~ 1181 (1252)
                      .--....+.++.........+.+..           +..  ....-....-.+. .-..+++++++|--+...     |.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~--~~~~~~~~~~~~~-~~~~~~~lvviD~l~~~~~~~~~~~  152 (274)
T d1nlfa_          87 HALGAHLSAEERQAVADGLLIQPLI-----------GSL--PNIMAPEWFDGLK-RAAEGRRLMVLDTLRRFHIEEENAS  152 (274)
T ss_dssp             HHHHTTSCHHHHHHHHHHEEECCCT-----------TSC--CCTTSHHHHHHHH-HHHTTCSEEEEECGGGGCCSCTTCH
T ss_pred             HHHHHCCCHHHHHCCCCCCEECCCC-----------CCC--CHHHHHHHHHHHH-HHCCCCCEEECCCHHHHCCCCCCCH
T ss_conf             9986236866653123332321456-----------742--0357899999988-7526765896281354226652322


Q ss_pred             HHHHHHHHHHHHHC--CCCEEEEEECCCH------------------HH-HCCCEEEEEEC
Q ss_conf             97999999999871--8975999814923------------------65-30698999949
Q 000856         1182 ESECVLQEALERLM--RGRTTVLVAHRLS------------------TI-RGVDCIGVVQD 1221 (1252)
Q Consensus      1182 ~te~~i~~~l~~~~--~~~TvI~IsHrl~------------------ti-~~~D~I~vl~~ 1221 (1252)
                      .....+...+..+.  .++++++|.|--.                  .+ ..+|.++.|..
T Consensus       153 ~~~~~~~~~l~~la~~~~~~vi~v~H~~K~~~~~~~~~~~~~~~Gssai~~~a~~v~~l~r  213 (274)
T d1nlfa_         153 GPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQSYLSS  213 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEEEE
T ss_conf             5689999887777644797540131005554446886653356427778742558999983

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.07  E-value=0.002  Score=38.41  Aligned_cols=28  Identities=29%  Similarity=0.382  Sum_probs=24.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf             9599998499998688999985237799
Q 000856         1038 GQSQALVGASGSGKSSVIALIERFYDPT 1065 (1252)
Q Consensus      1038 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1065 (1252)
                      |..+.|+||||||||||.+.|...++..
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~~   29 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPNL   29 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf             7499998999999999999998458997

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.89  E-value=0.039  Score=28.41  Aligned_cols=26  Identities=35%  Similarity=0.369  Sum_probs=21.1

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             60898999985899818999999951
Q 000856          390 FPAGKTVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       390 i~~g~~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      -+.-+.+.++|++||||||+++-+..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             99998999989999989999999997

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.89  E-value=0.0096  Score=33.17  Aligned_cols=51  Identities=24%  Similarity=0.238  Sum_probs=32.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCCCCCCCHHHHHHHCEEE
Q ss_conf             999985899818999999951467--9985898899316677889883201477
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYD--PNAGHVLLDNVDIKTLQLRWLRDQIGLV  446 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v  446 (1252)
                      .++|+|+.|+|||||+..|+....  ...|++. +|....++...+..+++.+-
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~   56 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVR   56 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEE
T ss_conf             999994889809999999999709755306622-22113562698887387687

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.84  E-value=0.04  Score=28.36  Aligned_cols=30  Identities=23%  Similarity=0.284  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             689999999998600998888717777999
Q 000856          506 GGQKQRIAIARAMLKNPKILLLDEATSALD  535 (1252)
Q Consensus       506 gGqkqrialARal~~~~~ililDe~ts~lD  535 (1252)
                      ..++-|-.+.+|-...|-|+++||.-+-+.
T Consensus        85 ~~~~l~~~f~~A~~~~p~il~ideid~l~~  114 (265)
T d1r7ra3          85 SEANVREIFDKARQAAPCVLFFDELDSIAK  114 (265)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESSGGGTCC
T ss_pred             HHHHHHHHHHHHHHCCCCCEEHHHHHHCCC
T ss_conf             589999999999863984356875463245

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.82  E-value=0.0072  Score=34.13  Aligned_cols=41  Identities=27%  Similarity=0.408  Sum_probs=33.2

Q ss_pred             EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             69983795999984999986889999852377997569989
Q 000856         1032 NLRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 1072 (1252)
Q Consensus      1032 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1072 (1252)
                      ...++.|..+.|+|++||||||+++.|+++.+|..=-|.|.
T Consensus       160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE  200 (323)
T d1g6oa_         160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE  200 (323)
T ss_dssp             HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred             HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECC
T ss_conf             99998378889994035662578999865301456233113

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.74  E-value=0.0025  Score=37.64  Aligned_cols=35  Identities=26%  Similarity=0.419  Sum_probs=27.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             8989999858998189999999514679985898899
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN  428 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g  428 (1252)
                      .|+.+.|.|++||||||+.+.|...+..  --+.+++
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~   37 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS   37 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECH
T ss_conf             9859999889999889999999999599--9799068

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=5.5e-05  Score=50.60  Aligned_cols=35  Identities=20%  Similarity=0.189  Sum_probs=28.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             89999858998189999999514679985898899
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN  428 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g  428 (1252)
                      ..+.|+||+|+|||||++.+.+.+....+.+...+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~   36 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY   36 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             69999889997199999999999997799799998

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.69  E-value=0.029  Score=29.49  Aligned_cols=45  Identities=18%  Similarity=0.341  Sum_probs=31.9

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf             9988887177779996749999999998618972999815942011
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIR  566 (1252)
Q Consensus       521 ~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~  566 (1252)
                      +..++++||+-. +.......+.+.+.....+...|++|++.+.+.
T Consensus       131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~  175 (252)
T d1sxje2         131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII  175 (252)
T ss_dssp             CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSC
T ss_pred             CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCHH
T ss_conf             724999424333-454311122100221356643000102111002

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.0052  Score=35.26  Aligned_cols=27  Identities=26%  Similarity=0.372  Sum_probs=23.9

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             898999985899818999999951467
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      .|..+.|+||||+||+||.+.|...++
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             980999999999999999999986398

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0025  Score=37.67  Aligned_cols=26  Identities=23%  Similarity=0.253  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf             99998589981899999995146799
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYDPN  420 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~~~  420 (1252)
                      .++|+|++|||||||++-|.+.+...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~   29 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCAR   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             89999189998999999999999977

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0081  Score=33.73  Aligned_cols=51  Identities=22%  Similarity=0.242  Sum_probs=34.6

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE--E----------EECCCCCCCCCHHHHHCC
Q ss_conf             79599998499998688999985237799756--9----------989931689997887322
Q 000856         1037 AGQSQALVGASGSGKSSVIALIERFYDPTAGK--V----------MIDGKDIRRLNLKSLRLK 1087 (1252)
Q Consensus      1037 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~--I----------~idG~di~~~~~~~lR~~ 1087 (1252)
                      .|..+.|+||||+||+||.+.|..-++...-.  |          ..||+|..-++.+...+.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~   63 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEM   63 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCEEECHHHHHHH
T ss_conf             980999999999999999999986398668427888763678865543212334328999987

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.053  Score=27.38  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=16.2

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9599998499998688999985237
Q 000856         1038 GQSQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1038 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      ...+-+.||+|+|||++++.+.+.+
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHC
T ss_conf             8867866899888228999999982

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.46  E-value=0.0061  Score=34.71  Aligned_cols=33  Identities=24%  Similarity=0.208  Sum_probs=23.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf             599998499998688999985237799756998993
Q 000856         1039 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK 1074 (1252)
Q Consensus      1039 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~ 1074 (1252)
                      +.|.|+|++||||||+++.|.+-.   .|...++.-
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~d   35 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINRD   35 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHC---CCCEEECHH
T ss_conf             799998999999999999999957---997996039

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.43  E-value=0.0064  Score=34.55  Aligned_cols=36  Identities=28%  Similarity=0.391  Sum_probs=27.9

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC
Q ss_conf             79599998499998688999985237799756998993
Q 000856         1037 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGK 1074 (1252)
Q Consensus      1037 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~ 1074 (1252)
                      .|+.|.|+|++||||||+.+.|.+-+..  --+.+|+-
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~d   38 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHSD   38 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHCC--CEEEECHH
T ss_conf             9859999889999889999999999599--97990689

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.38  E-value=0.005  Score=35.34  Aligned_cols=28  Identities=21%  Similarity=0.326  Sum_probs=24.3

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             0898999985899818999999951467
Q 000856          391 PAGKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       391 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      .+|-++.|+|++||||||+.+.|..-+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9976999889999999999999999986

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.22  E-value=0.01  Score=32.94  Aligned_cols=23  Identities=39%  Similarity=0.427  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      .++++|++|+|||||++.|.|..
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89999999999999999997787

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.22  E-value=0.0064  Score=34.55  Aligned_cols=25  Identities=24%  Similarity=0.329  Sum_probs=21.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             9999858998189999999514679
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYDP  419 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~~  419 (1252)
                      .+||.|++|||||||++.|...+..
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             9997898878999999999998363

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.21  E-value=0.0059  Score=34.80  Aligned_cols=24  Identities=33%  Similarity=0.533  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899818999999951467
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      .+.|+|||||||+||.+.|....+
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             699989999998999999997488

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.10  E-value=0.0029  Score=37.23  Aligned_cols=34  Identities=26%  Similarity=0.354  Sum_probs=25.3

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             8989999858998189999999514679985898
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL  425 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~  425 (1252)
                      +|+.++++|+||.|||||++.|.+......|+|.
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs  129 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS  129 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf             3564999877873487898751517676403555

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.08  E-value=0.0022  Score=38.07  Aligned_cols=35  Identities=23%  Similarity=0.333  Sum_probs=30.1

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             79599998499998688999985237799756998
Q 000856         1037 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 1071 (1252)
Q Consensus      1037 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i 1071 (1252)
                      +|++..++|+||.|||||++.|.+-.....|+|.-
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~  130 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  130 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf             35649998778734878987515176764035553

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.051  Score=27.52  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=15.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             89999858998189999999514
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      =+++++|++|+|||||++.|.|.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
T ss_conf             89999899999899999999688

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.01  E-value=0.0066  Score=34.43  Aligned_cols=26  Identities=27%  Similarity=0.143  Sum_probs=16.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             89999858998189999999514679
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFYDP  419 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~~~  419 (1252)
                      ..++|+|.+|||||||+.-|.+.+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             09999809999899999999999986

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.00  E-value=0.0078  Score=33.87  Aligned_cols=28  Identities=21%  Similarity=0.298  Sum_probs=24.7

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             3795999984999986889999852377
Q 000856         1036 RAGQSQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1036 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      ++|-.|.|+|.+||||||+.+.|..-+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9976999889999999999999999986

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.98  E-value=0.076  Score=26.22  Aligned_cols=88  Identities=20%  Similarity=0.158  Sum_probs=49.0

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCH
Q ss_conf             37959999849999868899998523779975699899316899978873220888046655755588885229999999
Q 000856         1036 RAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATE 1115 (1252)
Q Consensus      1036 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNL~~g~~~~sd 1115 (1252)
                      +.-+.+-++|+.||||||+++-++.-    .|-+.++.        +.++.                            .
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~--------D~~~~----------------------------~   51 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNR--------DTLGS----------------------------W   51 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEH--------HHHCS----------------------------H
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH----CCCEEECH--------HHHHH----------------------------H
T ss_conf             99989999899999899999999976----59789760--------77778----------------------------8


Q ss_pred             HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCEEEEE
Q ss_conf             99999999807212586089867885689999889259999-99999971399989982
Q 000856         1116 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQR-IAIARAVLKNPAILLLD 1173 (1252)
Q Consensus      1116 ~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQR-lalARALl~~p~ILiLD 1173 (1252)
                      ..+.+.++.        .+..|.+..+.  ..+++-.+|++ +.+|+..=-+..++.+|
T Consensus        52 ~~~~~~~~~--------~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l~  100 (172)
T d1yj5a2          52 QRCVSSCQA--------ALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNFC  100 (172)
T ss_dssp             HHHHHHHHH--------HHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             HHHHHHHHH--------HHHCCCCCEEE--CCCCCHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             899999999--------99779995551--76799999999999998558887999948

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=94.98  E-value=0.0095  Score=33.22  Aligned_cols=28  Identities=29%  Similarity=0.630  Sum_probs=24.8

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             0898999985899818999999951467
Q 000856          391 PAGKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       391 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      |+|-.++|.|++||||||+.+.|...+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf             9988899982899988999999999858

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=94.94  E-value=0.01  Score=32.90  Aligned_cols=28  Identities=29%  Similarity=0.489  Sum_probs=24.8

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             3795999984999986889999852377
Q 000856         1036 RAGQSQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1036 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      ++|-+|.|.|++||||||+.+.|..-+.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf             9988899982899988999999999858

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=94.88  E-value=0.011  Score=32.70  Aligned_cols=27  Identities=26%  Similarity=0.492  Sum_probs=23.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             898999985899818999999951467
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      ..+.+.|.|++||||||+.+.|...+.
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             985999989999998999999999728

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=94.86  E-value=0.081  Score=25.99  Aligned_cols=47  Identities=17%  Similarity=0.282  Sum_probs=34.3

Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEECCCHHHH
Q ss_conf             3999899826678999897999999999871--8975999814923653
Q 000856         1165 KNPAILLLDEATSALDAESECVLQEALERLM--RGRTTVLVAHRLSTIR 1211 (1252)
Q Consensus      1165 ~~p~ILiLDEpTSaLD~~te~~i~~~l~~~~--~~~TvI~IsHrl~ti~ 1211 (1252)
                      .+..++|+||.-.+=|++.-..+-.++-+..  .+++++++||..+...
T Consensus       113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~  161 (224)
T d1ewqa2         113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA  161 (224)
T ss_dssp             CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred             CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHH
T ss_conf             9772785545456862332002588888888623761378652023332

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0088  Score=33.47  Aligned_cols=23  Identities=39%  Similarity=0.632  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      .+||.|++||||||+.+.|...+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99998999787999999999996

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=94.85  E-value=0.0058  Score=34.87  Aligned_cols=31  Identities=16%  Similarity=0.111  Sum_probs=24.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             9999849999868899998523779975699
Q 000856         1040 SQALVGASGSGKSSVIALIERFYDPTAGKVM 1070 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~ 1070 (1252)
                      .++|+|++|||||||++-|.+.+....-++-
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~   34 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPG   34 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf             8999918999899999999999997797687

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.74  E-value=0.0094  Score=33.25  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858998189999999514
Q 000856          395 TVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      .++|+|++|+|||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHCCC
T ss_conf             9999899998799999985298

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.72  E-value=0.0078  Score=33.86  Aligned_cols=44  Identities=18%  Similarity=0.384  Sum_probs=30.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCEEECCCCCCCHH
Q ss_conf             9999858998189999999514679985898899316677889883201477367877611
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFAT  455 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~  455 (1252)
                      .++|.|++||||||+.+.|.....-..+.                 ..+..++++.+..+.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~  125 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPN  125 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCH
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHCCC-----------------CCEEEEEEEEEECCC
T ss_conf             99996899998768999999997304689-----------------965999521568984

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.72  E-value=0.0078  Score=33.87  Aligned_cols=24  Identities=46%  Similarity=0.775  Sum_probs=21.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             899998589981899999995146
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      +.++|.|++|||||||++.|...+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             289998999998999999999984

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.68  E-value=0.015  Score=31.63  Aligned_cols=29  Identities=34%  Similarity=0.572  Sum_probs=23.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf             99998589981899999995146799858
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYDPNAGH  423 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~  423 (1252)
                      .+||+|++|+|||||++.|.|...-..|.
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~   86 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIGNEEEGA   86 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf             79998999997899999995888677756

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.48  E-value=0.011  Score=32.77  Aligned_cols=25  Identities=24%  Similarity=0.554  Sum_probs=22.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             5999984999986889999852377
Q 000856         1039 QSQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1039 e~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      .+|+|+|++|||||||++.|..-+.
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             2899989999989999999999849

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=94.47  E-value=0.016  Score=31.47  Aligned_cols=27  Identities=22%  Similarity=0.368  Sum_probs=23.8

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             795999984999986889999852377
Q 000856         1037 AGQSQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1037 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      ..+.|.|.|++||||||+++.|.+.+.
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             985999989999998999999999728

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.46  E-value=0.012  Score=32.38  Aligned_cols=27  Identities=33%  Similarity=0.378  Sum_probs=23.6

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             089899998589981899999995146
Q 000856          391 PAGKTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       391 ~~g~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      ..+..+.|.|++||||||+.+.|...+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             987189998999989899999999986

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.37  E-value=0.013  Score=32.11  Aligned_cols=31  Identities=26%  Similarity=0.270  Sum_probs=24.8

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf             9899998589981899999995146799858
Q 000856          393 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGH  423 (1252)
Q Consensus       393 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~  423 (1252)
                      ++.++|.|++||||||+++.|...+......
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~   31 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVN   31 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             9889998999989899999999999876998

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=94.37  E-value=0.014  Score=31.93  Aligned_cols=27  Identities=26%  Similarity=0.567  Sum_probs=24.5

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             089899998589981899999995146
Q 000856          391 PAGKTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       391 ~~g~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      |+|-.+.|+||+||||||+.+.|...|
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             996389998999998899999999986

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.37  E-value=0.014  Score=31.85  Aligned_cols=23  Identities=39%  Similarity=0.453  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      .++++|++|+||||+++.|.|.-
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89998999986999999985898

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.016  Score=31.42  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=18.8

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9899998589981899999995146
Q 000856          393 GKTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       393 g~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      ...+.|+||||+||+||.+.|...+
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf             7719999989999999999999709

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.1  Score=25.11  Aligned_cols=46  Identities=20%  Similarity=0.186  Sum_probs=31.1

Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHH-HHHHC--CCCEEEEEECCCHHH
Q ss_conf             39998998266789998979999999-99871--897599981492365
Q 000856         1165 KNPAILLLDEATSALDAESECVLQEA-LERLM--RGRTTVLVAHRLSTI 1210 (1252)
Q Consensus      1165 ~~p~ILiLDEpTSaLD~~te~~i~~~-l~~~~--~~~TvI~IsHrl~ti 1210 (1252)
                      .+..++|+||.-++=++.....+-.+ ++.+.  ..+.+++.||.....
T Consensus       119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~  167 (234)
T d1wb9a2         119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT  167 (234)
T ss_dssp             CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHH
T ss_conf             4660885322235877456667898764543204544289852468776

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.33  E-value=0.014  Score=31.89  Aligned_cols=27  Identities=33%  Similarity=0.434  Sum_probs=23.7

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             379599998499998688999985237
Q 000856         1036 RAGQSQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1036 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      +.+..+.|+|++||||||+.+.|..-+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             987189998999989899999999986

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.33  E-value=0.014  Score=31.97  Aligned_cols=32  Identities=13%  Similarity=0.152  Sum_probs=25.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf             95999984999986889999852377997569
Q 000856         1038 GQSQALVGASGSGKSSVIALIERFYDPTAGKV 1069 (1252)
Q Consensus      1038 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I 1069 (1252)
                      ...|+|.|+.||||||+++.|...+......+
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~   32 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY   32 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf             98899989999898999999999998769986

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.33  E-value=0.0099  Score=33.08  Aligned_cols=44  Identities=30%  Similarity=0.241  Sum_probs=31.1

Q ss_pred             EEEECCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCCCC
Q ss_conf             88608989999858998189999999514679--985898899316
Q 000856          388 IFFPAGKTVAVVGGSGSGKSTVVSLIERFYDP--NAGHVLLDNVDI  431 (1252)
Q Consensus       388 l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~  431 (1252)
                      ..-++|..+-+.|.|||||||+.+.|...+..  .--.+.+||.++
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i   64 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   64 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf             8589986999989999998999999998877742750899753678

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.32  E-value=0.019  Score=30.80  Aligned_cols=68  Identities=12%  Similarity=0.188  Sum_probs=40.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHH----CCCCCC-CC
Q ss_conf             9999849999868899998523779975699899316899978873220888046655755588885----229999-99
Q 000856         1040 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI----AYGKEG-AT 1114 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNL----~~g~~~-~s 1114 (1252)
                      .|||.|++||||||+.+.|.....-..+                 ..++..|++|.+..+...++.-    ..|.|+ ++
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~l~~~~~~~~~g~Pes~D  144 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQVLKERGLMKKKGFPESYD  144 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBC
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHCC-----------------CCCEEEEEEEEEECCCHHHHHHCCCCCCCCHHHHH
T ss_conf             9999689999876899999999730468-----------------99659995215689845888836876688167631


Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999998
Q 000856         1115 EAEVVEAARA 1124 (1252)
Q Consensus      1115 d~~i~~al~~ 1124 (1252)
                      -+.+.+.+..
T Consensus       145 ~~~L~~~L~~  154 (308)
T d1sq5a_         145 MHRLVKFVSD  154 (308)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999999

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.27  E-value=0.015  Score=31.66  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=22.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf             99998499998688999985237799
Q 000856         1040 SQALVGASGSGKSSVIALIERFYDPT 1065 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~p~ 1065 (1252)
                      .|||.|++||||||+++.|...+...
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~~~   49 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLREQ   49 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             99978988789999999999983634

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.0073  Score=34.09  Aligned_cols=27  Identities=41%  Similarity=0.519  Sum_probs=23.6

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             898999985899818999999951467
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      +|-.+.++|++||||||+.+.|...+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             996999889999999999999999997

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.12  E-value=0.017  Score=31.29  Aligned_cols=32  Identities=25%  Similarity=0.394  Sum_probs=25.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             89999858998189999999514679985898899
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN  428 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g  428 (1252)
                      ..+.|.|++||||||+++.|.+.+.   +...+++
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~   34 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG   34 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEH
T ss_conf             0899989999998999999999809---9889830

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.09  E-value=0.016  Score=31.39  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=26.4

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC
Q ss_conf             5999984999986889999852377997569989931
Q 000856         1039 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKD 1075 (1252)
Q Consensus      1039 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~d 1075 (1252)
                      ..+.|+|++||||||+++.|.+-++   +...++|-+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~d~   36 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEGDI   36 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEHHH
T ss_conf             0899989999998999999999809---988983078

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.00  E-value=0.059  Score=27.03  Aligned_cols=44  Identities=16%  Similarity=0.135  Sum_probs=31.7

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf             988887177779996749999999998618972999815942011
Q 000856          522 PKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIR  566 (1252)
Q Consensus       522 ~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~~  566 (1252)
                      .+++++||+=. |+......+.+.+.+...+...|++|++.+.+.
T Consensus       116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~  159 (239)
T d1njfa_         116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP  159 (239)
T ss_dssp             SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred             CEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
T ss_conf             87999978110-899999999999856898869999738856367

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=0.011  Score=32.84  Aligned_cols=27  Identities=33%  Similarity=0.505  Sum_probs=23.8

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             795999984999986889999852377
Q 000856         1037 AGQSQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1037 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      +|-.|-|+|++||||||+++.|...+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             996999889999999999999999997

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=93.88  E-value=0.016  Score=31.38  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      .+.|+|++||||||+++.|...+
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             79898999999899999999997

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.86  E-value=0.13  Score=24.44  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=21.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             8999985899818999999951467
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      ..+.+.||+|||||++++.+.+...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             6488766898883599999998739

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.84  E-value=0.016  Score=31.43  Aligned_cols=26  Identities=42%  Similarity=0.567  Sum_probs=22.7

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89899998589981899999995146
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      +...+.|+||+||||||+++.|...|
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99489998999998899999999997

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.80  E-value=0.021  Score=30.56  Aligned_cols=45  Identities=22%  Similarity=0.226  Sum_probs=30.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCC
Q ss_conf             99998499998688999985237799756998993168999788732208880466557
Q 000856         1040 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALF 1098 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF 1098 (1252)
                      .|||.|++||||||+.+.|...+.....              ..-...+.++++|.+..
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~~~~~--------------~~~~~~~~vi~~D~yy~   48 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLGQNEV--------------DYRQKQVVILSQDSFYR   48 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTGGGS--------------CGGGCSEEEEEGGGGBC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCHHCC--------------CCCCCCEEEEECCCCCC
T ss_conf             9999899978799999999999641013--------------45788439993465322

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.80  E-value=0.02  Score=30.76  Aligned_cols=22  Identities=32%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858998189999999514
Q 000856          395 TVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      .++++|++|+|||||++.|.|.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             8999999998899999999689

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=93.73  E-value=0.019  Score=30.78  Aligned_cols=24  Identities=29%  Similarity=0.483  Sum_probs=21.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             899998589981899999995146
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      ..+.++||+||||||+.+.|...+
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             749998999999999999999996

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.71  E-value=0.019  Score=30.92  Aligned_cols=28  Identities=18%  Similarity=0.122  Sum_probs=23.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf             5999984999986889999852377997
Q 000856         1039 QSQALVGASGSGKSSVIALIERFYDPTA 1066 (1252)
Q Consensus      1039 e~vaIVG~SGsGKSTL~~lL~rl~~p~~ 1066 (1252)
                      ..++|+|++|||||||+.-|.+.+....
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g   29 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREG   29 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf             0999980999989999999999998679

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=93.66  E-value=0.02  Score=30.72  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=21.4

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             5999984999986889999852377
Q 000856         1039 QSQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1039 e~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      ..|.|+|++||||||+.++|..-+.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             7499989999999999999999969

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=93.65  E-value=0.023  Score=30.26  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999984999986889999852377
Q 000856         1040 SQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      +|.|+|++||||||+.+.|..-+.
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             798989999998999999999979

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.65  E-value=0.022  Score=30.35  Aligned_cols=32  Identities=31%  Similarity=0.484  Sum_probs=25.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             898999985899818999999951467998589889
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD  427 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~  427 (1252)
                      +...+.|+||+||||||+++.|..-|    |-+.++
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is   38 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS   38 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf             97289998999999899999999985----990885

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.027  Score=29.69  Aligned_cols=26  Identities=19%  Similarity=0.293  Sum_probs=21.5

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             95999984999986889999852377
Q 000856         1038 GQSQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1038 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      ...+.|+||||+||+||.+.|.+-++
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             77199999899999999999997097

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.63  E-value=0.044  Score=28.05  Aligned_cols=25  Identities=28%  Similarity=0.294  Sum_probs=21.3

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9599998499998688999985237
Q 000856         1038 GQSQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1038 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      +=+|||+|++|+|||||++.|++--
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             8889999999999999999997787

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=93.62  E-value=0.03  Score=29.34  Aligned_cols=33  Identities=18%  Similarity=0.374  Sum_probs=27.1

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             3795999984999986889999852377997569989
Q 000856         1036 RAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 1072 (1252)
Q Consensus      1036 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1072 (1252)
                      |+|=++.|+||.||||||+.+.|..-|    |-..++
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~----g~~~i~   33 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF----CVCHLA   33 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH----TCEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf             996389998999998899999999986----985775

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=93.60  E-value=0.14  Score=24.12  Aligned_cols=98  Identities=19%  Similarity=0.358  Sum_probs=50.6

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCEEECCCCCCCHHCHHHHHHCCCCCCCH
Q ss_conf             08989999858998189999999514679985898899316677889883201477367877611199997159999999
Q 000856          391 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATM  470 (1252)
Q Consensus       391 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~  470 (1252)
                      +....+++|||+|+||||.+-=|...+.- .|                  .+++++.=+.+             +. ...
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~-~g------------------~kV~lit~Dt~-------------R~-ga~   56 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKK-KG------------------FKVGLVGADVY-------------RP-AAL   56 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHH-TT------------------CCEEEEECCCS-------------SH-HHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CC------------------CCEEEEEEECC-------------CC-CHH
T ss_conf             99989999899999989999999999997-79------------------93699972023-------------55-156


Q ss_pred             HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
Q ss_conf             999999999537998850999754412599998896899999999986009988887177779996
Q 000856          471 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDA  536 (1252)
Q Consensus       471 ~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~  536 (1252)
                      +++..-++.       .    |......+....+..-  .+=++..+...+.++++.|  |++..+
T Consensus        57 eQL~~~a~~-------l----~v~~~~~~~~~~~~~~--~~~a~~~~~~~~~d~IlID--TaGr~~  107 (211)
T d1j8yf2          57 EQLQQLGQQ-------I----GVPVYGEPGEKDVVGI--AKRGVEKFLSEKMEIIIVD--TAGRHG  107 (211)
T ss_dssp             HHHHHHHHH-------H----TCCEECCTTCCCHHHH--HHHHHHHHHHTTCSEEEEE--CCCSCC
T ss_pred             HHHHHHCCC-------C----CCCEEECCCCHHHHHH--HHHHHHHHHCCCCCEEEEE--CCCCCC
T ss_conf             789874014-------6----8422302441024478--9999987402677369985--377676

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.60  E-value=0.018  Score=31.02  Aligned_cols=22  Identities=36%  Similarity=0.449  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998589981899999995146
Q 000856          396 VAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       396 ~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      +.|+|||||||+||++.|...+
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHC
T ss_conf             9999999999999999999748

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.56  E-value=0.027  Score=29.65  Aligned_cols=23  Identities=35%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      +++++|++|+|||||++.|.|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89999999998999999996777

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=93.54  E-value=0.14  Score=24.04  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=18.2

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998499998688999985237
Q 000856         1041 QALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1041 vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      +-+.||.|+|||++++.+.+..
T Consensus        45 iLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          45 VLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHC
T ss_conf             8876689888359999999873

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.53  E-value=0.019  Score=30.95  Aligned_cols=27  Identities=26%  Similarity=0.517  Sum_probs=24.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             898999985899818999999951467
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      ++..++|-|+.||||||++++|...+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             998899987888779999999999973

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.47  E-value=0.028  Score=29.54  Aligned_cols=23  Identities=35%  Similarity=0.413  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      +++++|++|+|||||++.+.|.-
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999999999999996888

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.46  E-value=0.017  Score=31.17  Aligned_cols=22  Identities=36%  Similarity=0.504  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858998189999999514
Q 000856          395 TVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      -+||+|++++|||||++.|.|.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             6999899998799999999689

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=93.40  E-value=0.028  Score=29.52  Aligned_cols=77  Identities=13%  Similarity=0.104  Sum_probs=42.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHCCCCEEEEEECCCHHHHCCCEEEEEECCEEEE
Q ss_conf             92599999999997139998998266789998979999-999998718975999814923653069899994977988
Q 000856         1150 SGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVL-QEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVE 1226 (1252)
Q Consensus      1150 SgGQkQRlalARALl~~p~ILiLDEpTSaLD~~te~~i-~~~l~~~~~~~TvI~IsHrl~ti~~~D~I~vl~~G~ive 1226 (1252)
                      ...+......+...++++++++++=.-..-+...+... .+.+.....++.+|+|....+........--...-.+++
T Consensus        64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~~  141 (161)
T d2gj8a1          64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIR  141 (161)
T ss_dssp             SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf             520247899999998741332011025654203455544455542014101020465444335588798727996799

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.38  E-value=0.025  Score=29.91  Aligned_cols=45  Identities=29%  Similarity=0.566  Sum_probs=30.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC-------------CCCCEEEECCCCCCCCCHHHHHC
Q ss_conf             999984999986889999852377-------------99756998993168999788732
Q 000856         1040 SQALVGASGSGKSSVIALIERFYD-------------PTAGKVMIDGKDIRRLNLKSLRL 1086 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~~~~lR~ 1086 (1252)
                      .|.|+|||||||+||++.|..-++             |..|+  .+|+|..-++.+....
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~   60 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKS   60 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--CCCCCCEECCHHHHHH
T ss_conf             699989999998999999997488662477764268999997--5784324324889999

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.35  E-value=0.017  Score=31.24  Aligned_cols=34  Identities=41%  Similarity=0.573  Sum_probs=27.3

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             60898999985899818999999951467998589889
Q 000856          390 FPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD  427 (1252)
Q Consensus       390 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~  427 (1252)
                      ++++..+.|+||+||||||+++.|..-|    |-..++
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is   38 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLS   38 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEE
T ss_conf             4678289998999998799999999986----984683

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.35  E-value=0.03  Score=29.33  Aligned_cols=32  Identities=31%  Similarity=0.399  Sum_probs=25.6

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             795999984999986889999852377997569989
Q 000856         1037 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMID 1072 (1252)
Q Consensus      1037 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1072 (1252)
                      +...|.|+||.||||||+.+.|..-|    |-+.++
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~   36 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS   36 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH----CCCEEC
T ss_conf             99489998999998899999999997----992672

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=93.32  E-value=0.037  Score=28.61  Aligned_cols=24  Identities=38%  Similarity=0.663  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899818999999951467
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      .++++|+.|||||||++-|.+...
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             899991899839999999999884

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.20  E-value=0.032  Score=29.10  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858998189999999514
Q 000856          395 TVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      .++++|.+|+|||||++.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999979999899999999589

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.18  E-value=0.03  Score=29.32  Aligned_cols=22  Identities=41%  Similarity=0.388  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999849999868899998523
Q 000856         1040 SQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      +|+|+|++|+|||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHCCC
T ss_conf             9999899998799999985298

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=93.15  E-value=0.14  Score=24.17  Aligned_cols=31  Identities=23%  Similarity=0.389  Sum_probs=20.9

Q ss_pred             EEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             3886089899998589981899999995146
Q 000856          387 SIFFPAGKTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       387 ~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      ++.-.+...+++|||+|+||||.+--|...+
T Consensus         5 ~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           5 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             6799999899998999998899999999999

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=93.10  E-value=0.045  Score=27.95  Aligned_cols=24  Identities=29%  Similarity=0.607  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999984999986889999852377
Q 000856         1040 SQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      .|+|+|+.|||||||++.|.+...
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             899991899839999999999884

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=93.08  E-value=0.031  Score=29.18  Aligned_cols=22  Identities=41%  Similarity=0.755  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858998189999999514
Q 000856          395 TVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      .+||.|++||||||+++.|..+
T Consensus         5 IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999898877899999999987

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.05  E-value=0.033  Score=29.04  Aligned_cols=23  Identities=22%  Similarity=0.495  Sum_probs=20.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             89999858998189999999514
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      ..++|+|++|+|||||++.|.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
T ss_conf             89999999998899999999679

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.03  E-value=0.041  Score=28.25  Aligned_cols=115  Identities=19%  Similarity=0.261  Sum_probs=66.1

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCEEECCCCCCCHHCHHHHHHCCCCCCCH
Q ss_conf             08989999858998189999999514679985898899316677889883201477367877611199997159999999
Q 000856          391 PAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATM  470 (1252)
Q Consensus       391 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~  470 (1252)
                      .++-.+.+.||+||||||.+..+....+....+|.                   .+. +|.          -+..+..  
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~-------------------tiE-dPi----------E~~~~~~--  203 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNIL-------------------TVE-DPI----------EFDIDGI--  203 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE-------------------EEE-SSC----------CSCCSSS--
T ss_pred             HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEE-------------------EEC-CCC----------CCCCCCC--
T ss_conf             41054898767877744779998666257874699-------------------962-674----------3456788--


Q ss_pred             HHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             99999999953799885099975441259999889689999999998600998888717777999674999999999861
Q 000856          471 AEVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLM  550 (1252)
Q Consensus       471 ~~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~  550 (1252)
                                            ..+.+.+     ..|+.---++..++=.+|++++..|..   |.++.....++   ..
T Consensus       204 ----------------------~q~~v~~-----~~~~~~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~a---a~  250 (401)
T d1p9ra_         204 ----------------------GQTQVNP-----RVDMTFARGLRAILRQDPDVVMVGEIR---DLETAQIAVQA---SL  250 (401)
T ss_dssp             ----------------------EEEECBG-----GGTBCHHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHH---HH
T ss_pred             ----------------------CEEEECC-----CCCCCHHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHH---HH
T ss_conf             ----------------------7026558-----767799999999984138889845768---75999999999---72


Q ss_pred             CCCEEEEECCCCCCHHCCCE
Q ss_conf             89729998159420110397
Q 000856          551 VGRTTVVVAHRLSTIRNVDT  570 (1252)
Q Consensus       551 ~~~t~i~ith~~~~~~~~d~  570 (1252)
                      .|+.|+..-|--+.....+|
T Consensus       251 tGhlV~tTlHa~~a~~~~~R  270 (401)
T d1p9ra_         251 TGHLVMSTLHTNTAVGAVTR  270 (401)
T ss_dssp             TTCEEEEEECCSSSHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHHHH
T ss_conf             49858998336766766543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.99  E-value=0.02  Score=30.73  Aligned_cols=21  Identities=33%  Similarity=0.563  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999858998189999999514
Q 000856          396 VAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       396 ~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      +||+|++++|||||++.|.|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
T ss_conf             999899999899999999689

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.89  E-value=0.092  Score=25.57  Aligned_cols=21  Identities=43%  Similarity=0.610  Sum_probs=17.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|.+|+|||||++-+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             899999899798999999970

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.87  E-value=0.035  Score=28.84  Aligned_cols=117  Identities=17%  Similarity=0.198  Sum_probs=60.1

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCHH
Q ss_conf             79599998499998688999985237799756998993168999788732208880466557555888852299999999
Q 000856         1037 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEA 1116 (1252)
Q Consensus      1037 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNL~~g~~~~sd~ 1116 (1252)
                      +-..+.|+||.||||||++++|..-|    |-+.|+.-|       -+|+.+   .+...-....+++-..-+. ...+.
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is~gd-------l~R~~~---~~~~~~~~~~i~~~~~~~~-~~~~~   71 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLSAGD-------LLRAEQ---GRAGSQYGELIKNCIKEGQ-IVPQE   71 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEEHHH-------HHHHHH---HSTTCSCHHHHHHHHHTTC-CCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEEHHH-------HHHHHH---HHCCCHHHHHHHHHHHCCC-CCCCH
T ss_conf             97289998999999899999999985----990885358-------999886---2010178899887640000-23203


Q ss_pred             HHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             99999998072125860898678856899998892599999999997139998998266
Q 000856         1117 EVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 1175 (1252)
Q Consensus      1117 ~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARALl~~p~ILiLDEp 1175 (1252)
                      .........-......    .-+..+-++   +-....|...+.+.+.....++.||=|
T Consensus        72 ~~~~~~~~~~~~~~~~----~~~~~vl~g---~p~~~~q~~~~~~~~~~~~~~i~l~~~  123 (196)
T d1ukza_          72 ITLALLRNAISDNVKA----NKHKFLIDG---FPRKMDQAISFERDIVESKFILFFDCP  123 (196)
T ss_dssp             HHHHHHHHHHHHHHHT----TCCEEEEET---CCCSHHHHHHHHHHTCCCSEEEEEECC
T ss_pred             HHHHHHHHHHHHHHCC----CCCCEEEEC---CCHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             6789999998864003----777535404---313689999999861545543125798

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.84  E-value=0.029  Score=29.49  Aligned_cols=24  Identities=29%  Similarity=0.407  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999984999986889999852377
Q 000856         1040 SQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      .|.|+|||||||+||.+.|...++
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             199999999999999999997488

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.79  E-value=0.038  Score=28.50  Aligned_cols=25  Identities=20%  Similarity=0.456  Sum_probs=21.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             8999985899818999999951467
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      ..++++|.+||||||+++.|.+.+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             8999989999999999999999997

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.74  E-value=0.14  Score=24.11  Aligned_cols=44  Identities=20%  Similarity=0.374  Sum_probs=29.9

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf             998888717777999674999999999861897299981594201
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI  565 (1252)
Q Consensus       521 ~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~  565 (1252)
                      +.+++++||.- .+.......+...+.+.......+++++....+
T Consensus        99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i  142 (227)
T d1sxjc2          99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL  142 (227)
T ss_dssp             SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred             CEEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHH
T ss_conf             71899996632-000237899998863112002320126708775

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=92.73  E-value=0.027  Score=29.68  Aligned_cols=43  Identities=30%  Similarity=0.360  Sum_probs=32.7

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCCCCCC
Q ss_conf             37959999849999868899998523779--97569989931689
Q 000856         1036 RAGQSQALVGASGSGKSSVIALIERFYDP--TAGKVMIDGKDIRR 1078 (1252)
Q Consensus      1036 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~idG~di~~ 1078 (1252)
                      ++|-.|-+.|.|||||||+.+.|..-+..  ..-.+.+||-+++.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~   66 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF   66 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
T ss_conf             998699998999999899999999887774275089975367887

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=92.70  E-value=0.039  Score=28.43  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858998189999999514
Q 000856          395 TVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      +++++|.+|+|||||++-+.+-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999999998999999999679

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=92.67  E-value=0.03  Score=29.37  Aligned_cols=28  Identities=14%  Similarity=0.220  Sum_probs=22.8

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             0898999985899818999999951467
Q 000856          391 PAGKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       391 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      ++.-++++||++|+|||||++-+.+-..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~   38 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRL   38 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             7777899999999898999999967887

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.64  E-value=0.043  Score=28.11  Aligned_cols=24  Identities=38%  Similarity=0.594  Sum_probs=21.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899818999999951467
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      .++|-||+||||||+.++|...|.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             999789998798999999999969

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=92.64  E-value=0.041  Score=28.30  Aligned_cols=21  Identities=43%  Similarity=0.759  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      .+||+|++||||||+++.+..
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999888887889999999998

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=92.62  E-value=0.036  Score=28.69  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=20.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             899998589981899999995146
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      +.+.++|++||||||+.+.|...+
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             988998899998899999999994

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.58  E-value=0.035  Score=28.80  Aligned_cols=25  Identities=32%  Similarity=0.445  Sum_probs=22.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             9999849999868899998523779
Q 000856         1040 SQALVGASGSGKSSVIALIERFYDP 1064 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~p 1064 (1252)
                      .|||-||+||||||..++|..-|..
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg~   29 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFGF   29 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             9997899987989999999999699

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.56  E-value=0.059  Score=27.05  Aligned_cols=42  Identities=10%  Similarity=0.194  Sum_probs=21.8

Q ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             0099888871777799967499999999986189729998159420
Q 000856          519 LKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLST  564 (1252)
Q Consensus       519 ~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~  564 (1252)
                      ..+.+++|+|-.. .. .+.+..+.+.+.+.  ++-+++|-.....
T Consensus       133 ~~~~d~~l~~~~~-~~-~~~d~~l~~~l~~~--~k~~~~V~nK~D~  174 (400)
T d1tq4a_         133 FYEYDFFIIISAT-RF-KKNDIDIAKAISMM--KKEFYFVRTKVDS  174 (400)
T ss_dssp             GGGCSEEEEEESS-CC-CHHHHHHHHHHHHT--TCEEEEEECCHHH
T ss_pred             HHCCEEEEEECCC-CC-CHHHHHHHHHHHHC--CCCEEEEEECCCC
T ss_conf             3226599996588-88-78899999999976--9987999708632

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.51  E-value=0.2  Score=22.98  Aligned_cols=41  Identities=20%  Similarity=0.422  Sum_probs=21.1

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCH
Q ss_conf             998998266789998979999999998718975999814923
Q 000856         1167 PAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLS 1208 (1252)
Q Consensus      1167 p~ILiLDEpTSaLD~~te~~i~~~l~~~~~~~TvI~IsHrl~ 1208 (1252)
                      .+++++||+-. |.......+.+.+.+....+.+|++|++++
T Consensus       132 ~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~  172 (252)
T d1sxje2         132 YKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS  172 (252)
T ss_dssp             CEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred             CEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCC
T ss_conf             24999424333-454311122100221356643000102111

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.028  Score=29.53  Aligned_cols=27  Identities=15%  Similarity=0.391  Sum_probs=24.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             795999984999986889999852377
Q 000856         1037 AGQSQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1037 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      ++..|+|-|+.||||||++++|...++
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             998899987888779999999999973

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=92.47  E-value=0.022  Score=30.35  Aligned_cols=24  Identities=29%  Similarity=0.368  Sum_probs=16.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             899998589981899999995146
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      -.++++|++++|||||++.|.+..
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             789998899998999999985898

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.46  E-value=0.045  Score=27.96  Aligned_cols=33  Identities=27%  Similarity=0.356  Sum_probs=25.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             89999858998189999999514679985898899
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN  428 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g  428 (1252)
                      ..+.+.||+||||||+++.+.+.+..  +-+.+++
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~   65 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN   65 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHC--CEEEEEC
T ss_conf             79998897998899999999998651--5489832

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.41  E-value=0.053  Score=27.41  Aligned_cols=29  Identities=21%  Similarity=0.188  Sum_probs=25.1

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             08989999858998189999999514679
Q 000856          391 PAGKTVAVVGGSGSGKSTVVSLIERFYDP  419 (1252)
Q Consensus       391 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~  419 (1252)
                      ++|.+++|-|+.||||||++++|...+..
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~   29 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCA   29 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             98059999899888999999999999987

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.38  E-value=0.069  Score=26.51  Aligned_cols=29  Identities=14%  Similarity=0.211  Sum_probs=24.9

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             86089899998589981899999995146
Q 000856          389 FFPAGKTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       389 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      -+++|+.+.|.||+||||||++.-++...
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             98599799999589999999999999999

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=92.38  E-value=0.046  Score=27.91  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858998189999999514
Q 000856          395 TVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      ++.++|++|+|||||++-+.+-
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             8999999998989999999659

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.038  Score=28.49  Aligned_cols=69  Identities=28%  Similarity=0.336  Sum_probs=37.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCEEECCCCCCCHHCHHHHHHCCCCCCCHHHHH
Q ss_conf             99998589981899999995146799858988993166778898832014773678776111999971599999999999
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMAEVE  474 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~~~~  474 (1252)
                      .+.|+||+||||||.++.|...|    |-..++.-+       -+|..+   .+....+...+.+.+.-+. ...++.+.
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~g~-------llR~~~---~~~~~~~~~~~~~~~~~~~-~v~d~~~~   67 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSAGE-------LLRDER---KNPDSQYGELIEKYIKEGK-IVPVEITI   67 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH----CCEEEEHHH-------HHHHHH---HCTTSTTHHHHHHHHHTTC-CCCHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH----CCCEECHHH-------HHHHHH---HHHHHHHHHHHHHHHHCCC-CCCCCHHH
T ss_conf             99997999999899999999986----992676889-------999988---7620468999999970697-21134036


Q ss_pred             HHHH
Q ss_conf             9999
Q 000856          475 AAAS  478 (1252)
Q Consensus       475 ~~~~  478 (1252)
                      ....
T Consensus        68 ~~~~   71 (194)
T d1teva_          68 SLLK   71 (194)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             7888

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.34  E-value=0.048  Score=27.75  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998499998688999985237
Q 000856         1040 SQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      +|+++|++|+||||+++.|+|--
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89998999986999999985898

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.34  E-value=0.043  Score=28.12  Aligned_cols=26  Identities=35%  Similarity=0.496  Sum_probs=22.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89899998589981899999995146
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      +.-.++|-|+.||||||+++.|...+
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             86199988999988899999999870

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.30  E-value=0.04  Score=28.37  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      .+.|+||+||||||+.+.|...|
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89998899999899999999987

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=92.30  E-value=0.029  Score=29.45  Aligned_cols=29  Identities=24%  Similarity=0.320  Sum_probs=24.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf             89899998589981899999995146799
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFYDPN  420 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~  420 (1252)
                      ..-.++|+|+.|+|||||+.-+.+.+...
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~   81 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLIRE   81 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             83289743899998999999999999756

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=92.27  E-value=0.042  Score=28.22  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      .+.|+|++||||||+.+.|...+
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
T ss_conf             39998999998899999999983

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=92.22  E-value=0.11  Score=24.83  Aligned_cols=33  Identities=24%  Similarity=0.216  Sum_probs=23.6

Q ss_pred             CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             3012038860898999985899818999999951
Q 000856          382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       382 ~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      .++.--+.+ .|.-+.+.|+||+||||++-.+..
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2           5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             178999999-999999981899998999999998

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=92.22  E-value=0.044  Score=28.05  Aligned_cols=30  Identities=27%  Similarity=0.451  Sum_probs=23.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             9999849999868899998523779975699899
Q 000856         1040 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1073 (1252)
                      .+.|+|++||||||+.++|...+    |--++|.
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d~   31 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL----DLVFLDS   31 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH----TCEEEEH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf             39998999998899999999983----9987836

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=92.21  E-value=0.078  Score=26.11  Aligned_cols=28  Identities=43%  Similarity=0.853  Sum_probs=21.9

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             0898999985899818999999951467
Q 000856          391 PAGKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       391 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      +++..++++||+|+||||.+--|...+.
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9977999989999988999999999999

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=92.18  E-value=0.027  Score=29.62  Aligned_cols=27  Identities=30%  Similarity=0.545  Sum_probs=22.7

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             898999985899818999999951467
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      +.-.+||.|+|||||||+.+.+...+.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             888999989997809999999999971

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=92.18  E-value=0.044  Score=28.04  Aligned_cols=31  Identities=29%  Similarity=0.425  Sum_probs=23.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             59999849999868899998523779975699899
Q 000856         1039 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073 (1252)
Q Consensus      1039 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1073 (1252)
                      +.|-++|++||||||+.++|..-+    |--++|+
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~L----g~~~id~   33 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARAL----GYEFVDT   33 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH----TCEEEEH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHH----CCCEEEH
T ss_conf             988998899998899999999994----9987865

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=92.11  E-value=0.043  Score=28.08  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      .+.|+||+||||||+++.|..-|
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89998899998799999999987

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=92.10  E-value=0.054  Score=27.32  Aligned_cols=22  Identities=18%  Similarity=0.454  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858998189999999514
Q 000856          395 TVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      .+||+|+..+|||||++.|.+.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCHHHHHHHHHHH
T ss_conf             9999907787099999999974

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.09  E-value=0.058  Score=27.12  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998499998688999985237
Q 000856         1040 SQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      +|+++|++|+|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89999999998999999996777

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.08  E-value=0.031  Score=29.19  Aligned_cols=23  Identities=39%  Similarity=0.580  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      .+.|.||+||||||+++.|..-|
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99998899999899999999987

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.07  E-value=0.079  Score=26.05  Aligned_cols=29  Identities=17%  Similarity=0.297  Sum_probs=24.7

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             98379599998499998688999985237
Q 000856         1034 RIRAGQSQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1034 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      -+++|+.+-|.|++||||||+..-+..-.
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             98599799999589999999999999999

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.05  E-value=0.052  Score=27.46  Aligned_cols=22  Identities=27%  Similarity=0.332  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999849999868899998523
Q 000856         1040 SQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      .|+|||++|+|||||++.|.+-
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             8999999998899999999689

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.03  E-value=0.053  Score=27.39  Aligned_cols=23  Identities=17%  Similarity=0.361  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      +++++|++|+|||||++-+.+-.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89999999999999999995899

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=91.88  E-value=0.23  Score=22.44  Aligned_cols=32  Identities=34%  Similarity=0.480  Sum_probs=24.4

Q ss_pred             CCCCEEE-EEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf             3012038-8608989999858998189999999
Q 000856          382 IFRDFSI-FFPAGKTVAVVGGSGSGKSTVVSLI  413 (1252)
Q Consensus       382 ~l~~~~l-~i~~g~~~~ivG~sGsGKSTl~~ll  413 (1252)
                      -|+++-- -+++|+.+.|.|++|+|||+++.-+
T Consensus        14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~   46 (242)
T d1tf7a1          14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF   46 (242)
T ss_dssp             THHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred             HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf             798855689969839999947999999999999

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.86  E-value=0.0026  Score=37.60  Aligned_cols=35  Identities=23%  Similarity=0.254  Sum_probs=28.3

Q ss_pred             CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             301203886089899998589981899999995146
Q 000856          382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       382 ~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      .+++.++++.+| .+.|+|+|||||||++..|.-.+
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             870279974998-08998899998799999999996

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.071  Score=26.44  Aligned_cols=30  Identities=23%  Similarity=0.226  Sum_probs=25.5

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf             379599998499998688999985237799
Q 000856         1036 RAGQSQALVGASGSGKSSVIALIERFYDPT 1065 (1252)
Q Consensus      1036 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1065 (1252)
                      ++|-.|+|.|+-||||||++++|...+...
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~~~   30 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALCAA   30 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             980599998998889999999999999877

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=91.81  E-value=0.072  Score=26.36  Aligned_cols=33  Identities=21%  Similarity=0.242  Sum_probs=25.4

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf             379599998499998688999985237799756
Q 000856         1036 RAGQSQALVGASGSGKSSVIALIERFYDPTAGK 1068 (1252)
Q Consensus      1036 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1068 (1252)
                      .++..+-+.||+||||||.+..+++..+....+
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~  188 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN  188 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred             HHHCEEEEECCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf             410548987678777447799986662578746

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.77  E-value=0.049  Score=27.64  Aligned_cols=42  Identities=21%  Similarity=0.381  Sum_probs=28.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCC
Q ss_conf             9999849999868899998523779975699899316899978873220
Q 000856         1040 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKI 1088 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i 1088 (1252)
                      .|.+||.+||||||+++.|.+.+...       |.+..-++.+.+|..+
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~~~-------~~~~~~~~~D~~r~~~   45 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLNFI-------GVPTREFNVGQYRRDM   45 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC-------CCCCEEECCCCEEHHH
T ss_conf             99998999999999999999999746-------9997397453011323

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.77  E-value=0.074  Score=26.30  Aligned_cols=28  Identities=25%  Similarity=0.456  Sum_probs=25.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             8989999858998189999999514679
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFYDP  419 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~  419 (1252)
                      +|..+++-|+.||||||++++|...+..
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             7689999899888699999999999971

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.12  Score=24.61  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=17.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHC
Q ss_conf             8999985899818999999951
Q 000856          394 KTVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      -+++++|++|+|||||++-+.+
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
T ss_conf             3899999899298999999971

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.75  E-value=0.063  Score=26.84  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999849999868899998523
Q 000856         1040 SQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      +|+|+|++|+|||||++.|.+-
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999999998899999999679

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=91.74  E-value=0.13  Score=24.38  Aligned_cols=21  Identities=33%  Similarity=0.455  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      ++.++|.+|+|||||++-+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899588999999972

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.73  E-value=0.073  Score=26.35  Aligned_cols=27  Identities=22%  Similarity=0.400  Sum_probs=24.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             898999985899818999999951467
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      +|..+++-|+.||||||++++|...+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             987899989988879999999999999

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=91.71  E-value=0.051  Score=27.56  Aligned_cols=24  Identities=25%  Similarity=0.469  Sum_probs=21.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899818999999951467
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      .++|.||+||||+|+.++|..-|.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             899779998898999999999969

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.67  E-value=0.069  Score=26.51  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998499998688999985237
Q 000856         1040 SQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      +|+++|++|+|||||++.|++-.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999999999999996888

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=91.66  E-value=0.06  Score=27.01  Aligned_cols=22  Identities=41%  Similarity=0.637  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999849999868899998523
Q 000856         1040 SQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      .+||+|.+||||||+++.|..+
T Consensus         5 IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999898877899999999987

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.66  E-value=0.061  Score=26.91  Aligned_cols=23  Identities=35%  Similarity=0.465  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      .+.++|++||||||+.++|...+
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
T ss_conf             48998899998899999999984

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.65  E-value=0.068  Score=26.56  Aligned_cols=116  Identities=16%  Similarity=0.174  Sum_probs=56.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf             99998499998688999985237799756998993168999788732208880466557555888852299999999999
Q 000856         1040 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVV 1119 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNL~~g~~~~sd~~i~ 1119 (1252)
                      +|.|.||.||||||.++.|..-|    |-..++--       +-+|..+   .+....+...+.+.+.-+ ...+|+.+.
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~g-------~llR~~~---~~~~~~~~~~~~~~~~~~-~~v~d~~~~   67 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSAG-------ELLRDER---KNPDSQYGELIEKYIKEG-KIVPVEITI   67 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH----CCEEEEHH-------HHHHHHH---HCTTSTTHHHHHHHHHTT-CCCCHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH----CCCEECHH-------HHHHHHH---HHHHHHHHHHHHHHHHCC-CCCCCCHHH
T ss_conf             99997999999899999999986----99267688-------9999988---762046899999997069-721134036


Q ss_pred             HHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--CE-EEEECC
Q ss_conf             999980721258608986788568999988925999999999971399--98-998266
Q 000856         1120 EAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNP--AI-LLLDEA 1175 (1252)
Q Consensus      1120 ~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARALl~~p--~I-LiLDEp 1175 (1252)
                      ..+... +........ .-+..+.+ |  +.-.+.|...+.+.+-...  .+ +++|-+
T Consensus        68 ~~~~~~-~~~~~~~~~-~~~~~~~~-g--~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~  121 (194)
T d1teva_          68 SLLKRE-MDQTMAANA-QKNKFLID-G--FPRNQDNLQGWNKTMDGKADVSFVLFFDCN  121 (194)
T ss_dssp             HHHHHH-HHHHHHHCT-TCCEEEEE-S--CCCSHHHHHHHHHHHTTTCEEEEEEEEECC
T ss_pred             HHHHHH-HCCCCHHHH-CCCCEEEC-C--CHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             788876-412100011-24511101-1--030489999986442105543389962476

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=91.63  E-value=0.24  Score=22.25  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=22.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             79599998499998688999985237799756998
Q 000856         1037 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMI 1071 (1252)
Q Consensus      1037 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i 1071 (1252)
                      .-..+++|||+|+||||.+-=|...+.-...+|.+
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~l   45 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGL   45 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf             99899998999999899999999999977993699

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=91.57  E-value=0.068  Score=26.58  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999849999868899998523
Q 000856         1040 SQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      .|||+|..||||||+.+.|..+
T Consensus         4 iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9998888878899999999987

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.50  E-value=0.079  Score=26.07  Aligned_cols=27  Identities=15%  Similarity=0.321  Sum_probs=24.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             795999984999986889999852377
Q 000856         1037 AGQSQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1037 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      +|..|+|-|.-||||||++++|...++
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             987899989988879999999999999

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.49  E-value=0.048  Score=27.72  Aligned_cols=118  Identities=19%  Similarity=0.238  Sum_probs=66.5

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf             83795999984999986889999852377997569989931689997887322088804665575558888522999999
Q 000856         1035 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGAT 1114 (1252)
Q Consensus      1035 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNL~~g~~~~s 1114 (1252)
                      ++++..|.|.||.||||||+.+.|..-|    |-..++.-++       +|..+   ...+ .....+.+.+.-+ ...+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~g~l-------lr~~~---~~~~-~~~~~~~~~~~~~-~~~~   68 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLSTGDL-------LRAEV---SSGS-ARGKMLSEIMEKG-QLVP   68 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEHHHH-------HHHHH---HHTC-HHHHHHHHHHTTT-CCCC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHH----CCEEEECCHH-------HHHHH---HHHH-HHHHHHHHHHHHC-CCCC
T ss_conf             4678289998999998799999999986----9846833478-------99999---8767-6514567777631-3776


Q ss_pred             HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf             99999999980721258608986788568999988925999999999971399989982667
Q 000856         1115 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEAT 1176 (1252)
Q Consensus      1115 d~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARALl~~p~ILiLDEpT 1176 (1252)
                      ++-+...+...     +...+...+-.+-+   .+..-..|--.+.+.+.....+..+|.+.
T Consensus        69 ~~~~~~~~~~~-----l~~~~~~~~g~ild---g~pr~~~qa~~~~~~~~~~~~~~~~~~~~  122 (194)
T d3adka_          69 LETVLDMLRDA-----MVAKVDTSKGFLID---GYPREVKQGEEFERKIGQPTLLLYVDAGP  122 (194)
T ss_dssp             HHHHHHHHHHH-----HHTTTTTCSCEEEE---SCCSSHHHHHHHHHHTCCCSEEEEEECCH
T ss_pred             HHEEEEEHHHH-----HHHCCCCCCCCEEE---ECCCHHHHHHHHHHHHCCCCCHHCCCCCH
T ss_conf             22244102456-----64032235660243---11101578999999837752000033312

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.44  E-value=0.052  Score=27.45  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998499998688999985237
Q 000856         1040 SQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      ++.|.||.||||||+.+.|..-|
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99998899999899999999987

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.40  E-value=0.057  Score=27.14  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=22.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             5999984999986889999852377
Q 000856         1039 QSQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1039 e~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      -.|+|.|..||||||++++|.+...
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             1999889999888999999998707

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=91.40  E-value=0.068  Score=26.55  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=23.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             9999858998189999999514679985
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYDPNAG  422 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G  422 (1252)
                      .+.+.||+|+||||+++++...+....+
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~   64 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNIH   64 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             4898799997388999999850388853

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=91.36  E-value=0.099  Score=25.32  Aligned_cols=23  Identities=17%  Similarity=0.276  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      +++++|++|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHCCCC
T ss_conf             99999999989999999980899

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.34  E-value=0.071  Score=26.41  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899818999999951467
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      .+.++||+||||||..+.|...+.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             899987999998999999999869

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.32  E-value=0.075  Score=26.22  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998499998688999985237
Q 000856         1040 SQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      +|.|+|+.||||||+.+.|..-|
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89998899999899999999987

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=91.27  E-value=0.0037  Score=36.35  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=28.3

Q ss_pred             CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             200026998379599998499998688999985237
Q 000856         1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1027 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      .+++.++.+.+| .+.|+|+|||||||++.+|.-.+
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             870279974998-08998899998799999999996

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=91.26  E-value=0.043  Score=28.14  Aligned_cols=11  Identities=36%  Similarity=0.531  Sum_probs=5.4

Q ss_pred             EECCCEEEEEC
Q ss_conf             60898999985
Q 000856          390 FPAGKTVAVVG  400 (1252)
Q Consensus       390 i~~g~~~~ivG  400 (1252)
                      ...|..+|++-
T Consensus        79 ~~~g~~vavla   89 (327)
T d2p67a1          79 IREGLKVAVIA   89 (327)
T ss_dssp             HHTTCCEEEEE
T ss_pred             HHCCCCEEEEC
T ss_conf             75698332203

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.22  E-value=0.037  Score=28.58  Aligned_cols=48  Identities=15%  Similarity=0.175  Sum_probs=27.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCCCCCCCHHHHHHHC
Q ss_conf             999985899818999999951467--9985898899316677889883201
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYD--PNAGHVLLDNVDIKTLQLRWLRDQI  443 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~i  443 (1252)
                      .+||+|+.|||||||+..|+-...  ...|++. +|..+.++...+..+++
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E~~r~~   57 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQERERGI   57 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEE-CCCEEEECCHHHHHCCC
T ss_conf             999995898998999999999648534023365-18469856588875188

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.19  E-value=0.087  Score=25.76  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|++|+|||||++-+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999698999999970

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.19  E-value=0.09  Score=25.63  Aligned_cols=28  Identities=18%  Similarity=0.362  Sum_probs=25.1

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             7959999849999868899998523779
Q 000856         1037 AGQSQALVGASGSGKSSVIALIERFYDP 1064 (1252)
Q Consensus      1037 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1064 (1252)
                      +|..|+|-|.-||||||++++|......
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~   29 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP   29 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             7689999899888699999999999971

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.15  E-value=0.057  Score=27.18  Aligned_cols=23  Identities=30%  Similarity=0.271  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      .++|-|+.|||||||.+.|....
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99837998788999999999999

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=91.15  E-value=0.058  Score=27.09  Aligned_cols=35  Identities=14%  Similarity=0.427  Sum_probs=25.7

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             8989999858998189999999514679985898899
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN  428 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g  428 (1252)
                      ++..+.++||+|||||.|++.+.+.+..  --+.+++
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~   82 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEA   82 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCCC--CHHCCCC
T ss_conf             9866999899998888999998621322--1000344

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.14  E-value=0.048  Score=27.77  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999849999868899998523
Q 000856         1040 SQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      .|||+|++++|||||++.|.|-
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             6999899998799999999689

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=91.09  E-value=0.15  Score=23.81  Aligned_cols=29  Identities=28%  Similarity=0.292  Sum_probs=22.1

Q ss_pred             EEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             38860898999985899818999999951
Q 000856          387 SIFFPAGKTVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       387 ~l~i~~g~~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      ++---.|.-+.+.|+||+||||++-.+..
T Consensus         8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_           8 VLVDIYGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf             99999999999980899998999999998

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.05  E-value=0.057  Score=27.19  Aligned_cols=25  Identities=40%  Similarity=0.522  Sum_probs=21.4

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             8999985899818999999951467
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      +.+.|.|++||||||+++.|...+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             1999989899898999999999998

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.05  E-value=0.046  Score=27.87  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=19.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             89999858998189999999514
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      =.++++|+.++|||||+..|...
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCHHHHHHHHHHH
T ss_conf             19999947898499999999998

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=90.97  E-value=0.086  Score=25.79  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998499998688999985237
Q 000856         1040 SQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      +|.|+|+.||||||+.+.|..-|
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89998899998799999999987

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.92  E-value=0.089  Score=25.66  Aligned_cols=22  Identities=27%  Similarity=0.332  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999849999868899998523
Q 000856         1040 SQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      .|+|+|.+|+|||||++.|.|-
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999979999899999999589

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=90.91  E-value=0.085  Score=25.81  Aligned_cols=22  Identities=50%  Similarity=0.721  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858998189999999514
Q 000856          395 TVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      .+||+|..||||||+++.+...
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9997898868899999999987

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.90  E-value=0.085  Score=25.80  Aligned_cols=23  Identities=26%  Similarity=0.247  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             89999858998189999999514
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      ..++|+|++|+|||||++-+.+-
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
T ss_conf             98999999998989999999809

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.90  E-value=0.061  Score=26.95  Aligned_cols=24  Identities=33%  Similarity=0.481  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999984999986889999852377
Q 000856         1040 SQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      ++.++|++||||||+.++|..-+.
T Consensus         3 ~IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             489988999988999999999849

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=90.88  E-value=0.081  Score=25.97  Aligned_cols=26  Identities=38%  Similarity=0.593  Sum_probs=22.2

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             98999985899818999999951467
Q 000856          393 GKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       393 g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      .=.+.|+||.||||||+.+.|+.-|.
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~g   31 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHFE   31 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             21699988999987999999999979

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.87  E-value=0.1  Score=25.27  Aligned_cols=25  Identities=24%  Similarity=0.430  Sum_probs=21.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             8999985899818999999951467
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      ..+.+.||+|+||||+++++++.+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             4499987999988899999999987

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=90.84  E-value=0.077  Score=26.14  Aligned_cols=13  Identities=23%  Similarity=0.414  Sum_probs=8.0

Q ss_pred             CCCEEEEECCCCC
Q ss_conf             9988887177779
Q 000856          521 NPKILLLDEATSA  533 (1252)
Q Consensus       521 ~~~ililDe~ts~  533 (1252)
                      .|.|+++||.=+.
T Consensus       115 ~~~IIf~DEIdki  127 (309)
T d1ofha_         115 QNGIVFIDEIDKI  127 (309)
T ss_dssp             HHCEEEEECGGGG
T ss_pred             CCCEEEEHHHHHH
T ss_conf             7856884246454

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.82  E-value=0.07  Score=26.45  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      .+.|.||+||||||+.+.|..-|
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89998899999799999999998

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.70  E-value=0.2  Score=23.02  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      ++.++|++|+|||+|++-+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899789999999973

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=90.68  E-value=0.061  Score=26.95  Aligned_cols=25  Identities=32%  Similarity=0.527  Sum_probs=21.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             9999849999868899998523779
Q 000856         1040 SQALVGASGSGKSSVIALIERFYDP 1064 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~p 1064 (1252)
                      .+.|.|++||||||+++.|...+.-
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             9999898998989999999999987

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=90.65  E-value=0.093  Score=25.50  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999849999868899998523
Q 000856         1040 SQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      +++|||++|+|||||++.+.+-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999999998999999999679

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=90.65  E-value=0.12  Score=24.67  Aligned_cols=44  Identities=34%  Similarity=0.522  Sum_probs=29.4

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCC
Q ss_conf             37959999849999868899998523779975699899316899
Q 000856         1036 RAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRL 1079 (1252)
Q Consensus      1036 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~ 1079 (1252)
                      +++..+++|||+|+||||.+-=|...+.-..-+|.+=..|..+.
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~   47 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRA   47 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSST
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf             99779999899999889999999999997799079998136665

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=90.51  E-value=0.098  Score=25.35  Aligned_cols=22  Identities=18%  Similarity=0.326  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999849999868899998523
Q 000856         1040 SQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      +|.++|++|+|||||++-+.+-
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             8999999998989999999659

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=90.49  E-value=0.1  Score=25.17  Aligned_cols=25  Identities=20%  Similarity=0.291  Sum_probs=22.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             9999849999868899998523779
Q 000856         1040 SQALVGASGSGKSSVIALIERFYDP 1064 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~p 1064 (1252)
                      .|+|-||.||||||+.+.|..-|.-
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl   29 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQW   29 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             8997799988989999999999699

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.40  E-value=0.13  Score=24.40  Aligned_cols=27  Identities=19%  Similarity=0.244  Sum_probs=23.4

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             860898999985899818999999951
Q 000856          389 FFPAGKTVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       389 ~i~~g~~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      =+++|+.+.|.|++||||||++.-++-
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             986996999983899988999999999

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.39  E-value=0.2  Score=22.96  Aligned_cols=30  Identities=37%  Similarity=0.583  Sum_probs=21.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHC-----CCCCCCCEE
Q ss_conf             999985899818999999951-----467998589
Q 000856          395 TVAVVGGSGSGKSTVVSLIER-----FYDPNAGHV  424 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~-----~~~~~~G~i  424 (1252)
                      +++++|.+|+|||||++-+.+     .+.|+.|..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~   41 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS   41 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             89999999979999999997399885457664520

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.38  E-value=0.098  Score=25.34  Aligned_cols=68  Identities=24%  Similarity=0.260  Sum_probs=37.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf             99998499998688999985237799756998993168999788732208880466557555888852299999999999
Q 000856         1040 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEVV 1119 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNL~~g~~~~sd~~i~ 1119 (1252)
                      ++.|+|+.||||||..+.|..-|.    -..++.-+       -+|....    ...-....+++-+.-+.. ..++.+.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~----~~~i~~~~-------llr~~~~----~~~~~~~~i~~~~~~g~~-~~d~~v~   65 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG----IPQISTGD-------MLRAAVK----SGSELGKQAKDIMDAGKL-VTDELVI   65 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC----CCEEEHHH-------HHHHHHH----HTCTTTGGGHHHHHHTCC-CCHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC----CCEECHHH-------HHHHHHC----CCCHHHHHHHHHHHCCCC-CCCHHHH
T ss_conf             899987999998999999999869----95551014-------7677550----398589999999976998-7116399


Q ss_pred             HHHH
Q ss_conf             9999
Q 000856         1120 EAAR 1123 (1252)
Q Consensus      1120 ~al~ 1123 (1252)
                      ..+.
T Consensus        66 ~~~~   69 (179)
T d1e4va1          66 ALVK   69 (179)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9999

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=90.36  E-value=0.074  Score=26.30  Aligned_cols=27  Identities=11%  Similarity=0.332  Sum_probs=22.4

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             379599998499998688999985237
Q 000856         1036 RAGQSQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1036 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      ++.-++++||++|+|||||++.|.+-.
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             777789999999989899999996788

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=90.33  E-value=0.1  Score=25.24  Aligned_cols=34  Identities=18%  Similarity=0.231  Sum_probs=29.1

Q ss_pred             CEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             2038860898999985899818999999951467
Q 000856          385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       385 ~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      |.=+.+.+|++.+|+|++|+|||||+.-+.+-..
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             4125645787556867999887899999999775

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.30  E-value=0.022  Score=30.32  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858998189999999514
Q 000856          395 TVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      +++++|++|+|||||++.|.|.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             8999999999999999999589

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=90.28  E-value=0.1  Score=25.16  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=20.8

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             08989999858998189999999514
Q 000856          391 PAGKTVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       391 ~~g~~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      ++.=+++++|.+|||||||++-+.+-
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf             98579999999998989999999668

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.28  E-value=0.21  Score=22.82  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|..|+|||||++-+..
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999198999999972

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=90.23  E-value=0.15  Score=23.92  Aligned_cols=23  Identities=13%  Similarity=0.283  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998499998688999985237
Q 000856         1040 SQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      +++++|+.|+|||||++.|.+-.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHCCCC
T ss_conf             99999999989999999980899

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.17  E-value=0.063  Score=26.81  Aligned_cols=21  Identities=43%  Similarity=0.596  Sum_probs=19.5

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999849999868899998523
Q 000856         1041 QALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1041 vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      |||+|++|+|||||++.|.|-
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
T ss_conf             999899999899999999689

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.07  E-value=0.14  Score=24.08  Aligned_cols=26  Identities=23%  Similarity=0.387  Sum_probs=23.3

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             98379599998499998688999985
Q 000856         1034 RIRAGQSQALVGASGSGKSSVIALIE 1059 (1252)
Q Consensus      1034 ~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1059 (1252)
                      -+++|+.+-|.|++||||||+..-+.
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             98699699998389998899999999

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.97  E-value=0.11  Score=24.94  Aligned_cols=21  Identities=19%  Similarity=0.406  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|++|+|||||++-+.+
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999198999999973

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.84  E-value=0.3  Score=21.59  Aligned_cols=109  Identities=13%  Similarity=0.212  Sum_probs=64.7

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCEEECCCCCCCHHCHHHHHHCCCCCCCHH
Q ss_conf             89899998589981899999995146799858988993166778898832014773678776111999971599999999
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPEATMA  471 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~Ni~~~~~~~~~~  471 (1252)
                      .+..+.+.||+|+||+|+++.+.....-..-.                +..+-++.-+              + ....-+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~----------------h~D~~~i~~~--------------~-~~I~Id   62 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPPK----------------ASDVLEIDPE--------------G-ENIGID   62 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCC----------------TTTEEEECCS--------------S-SCBCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC----------------CCCEEEEECC--------------C-CCCCHH
T ss_conf             98559988989988899999999998434567----------------9988998077--------------6-789989


Q ss_pred             HHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             99999999537998850999754412599998896899999999986009988887177779996749999999998618
Q 000856          472 EVEAAASAANAHSFITLLPNGYSTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMV  551 (1252)
Q Consensus       472 ~~~~~~~~~~~~~~i~~lp~g~~t~v~~~g~~LSgGqkqrialARal~~~~~ililDe~ts~lD~~~~~~i~~~l~~~~~  551 (1252)
                      ++.+..      +++..-|.                           ..+.+|+++||+-. +...+...+.+.+.+--.
T Consensus        63 ~IR~i~------~~~~~~~~---------------------------~~~~KviIId~ad~-l~~~aqNaLLK~LEEPp~  108 (198)
T d2gnoa2          63 DIRTIK------DFLNYSPE---------------------------LYTRKYVIVHDCER-MTQQAANAFLKALEEPPE  108 (198)
T ss_dssp             HHHHHH------HHHTSCCS---------------------------SSSSEEEEETTGGG-BCHHHHHHTHHHHHSCCT
T ss_pred             HHHHHH------HHHHHCCC---------------------------CCCCEEEEEECCCC-CCHHHHHHHHHHHHCCCC
T ss_conf             999999------99961754---------------------------58987999947310-366666478887737898


Q ss_pred             CCEEEEECCCCCCH
Q ss_conf             97299981594201
Q 000856          552 GRTTVVVAHRLSTI  565 (1252)
Q Consensus       552 ~~t~i~ith~~~~~  565 (1252)
                      +...|++|++.+.+
T Consensus       109 ~t~fiLit~~~~~l  122 (198)
T d2gnoa2         109 YAVIVLNTRRWHYL  122 (198)
T ss_dssp             TEEEEEEESCGGGS
T ss_pred             CCEEEECCCCHHHC
T ss_conf             85222206995668

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.83  E-value=0.25  Score=22.13  Aligned_cols=29  Identities=38%  Similarity=0.532  Sum_probs=22.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf             999984999986889999852-----37799756
Q 000856         1040 SQALVGASGSGKSSVIALIER-----FYDPTAGK 1068 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G~ 1068 (1252)
                      +++++|.+|+|||||++-+.+     -|.|+-|.
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~   37 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED   37 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf             8999998997989999999709998763761331

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=89.77  E-value=0.13  Score=24.50  Aligned_cols=22  Identities=41%  Similarity=0.524  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999849999868899998523
Q 000856         1040 SQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      .|||+|..||||||..+.|..+
T Consensus         5 iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9997898868899999999987

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=89.74  E-value=0.19  Score=23.05  Aligned_cols=29  Identities=28%  Similarity=0.302  Sum_probs=19.5

Q ss_pred             EEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             38860898999985899818999999951
Q 000856          387 SIFFPAGKTVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       387 ~l~i~~g~~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      ++-.-.|.-+.+.|+||+||||++-.+..
T Consensus         9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2           9 VLVDVYGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf             99999999999980899999999999998

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.72  E-value=0.099  Score=25.30  Aligned_cols=29  Identities=21%  Similarity=0.400  Sum_probs=22.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             999985899818999999951467998589889
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD  427 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~  427 (1252)
                      .+.++||.||||||+.+.|...|    |-..++
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~   32 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLA   32 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH----CCCEEE
T ss_conf             99998999999899999999996----994583

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.68  E-value=0.22  Score=22.66  Aligned_cols=24  Identities=33%  Similarity=0.591  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899818999999951467
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      ++.++|.+|+|||||++.+.+...
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~~   28 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVHD   28 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             999999899299999999972867

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.63  E-value=0.13  Score=24.45  Aligned_cols=23  Identities=13%  Similarity=0.388  Sum_probs=20.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             59999849999868899998523
Q 000856         1039 QSQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1039 e~vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      .|++++|++|+|||||++.|.+-
T Consensus         1 ~KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           1 GKLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
T ss_conf             98999999999999999999589

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.55  E-value=0.14  Score=24.23  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998499998688999985237
Q 000856         1040 SQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      ++.|.|+.||||||+.+.|..-|
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89998899999799999999998

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.55  E-value=0.2  Score=22.97  Aligned_cols=31  Identities=16%  Similarity=0.350  Sum_probs=25.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             8989999858998189999999514679985
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFYDPNAG  422 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G  422 (1252)
                      +...+.|.||+|+||||+++.+...+....+
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~~~~~   72 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYKDKTT   72 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             8881688898999899999999999754468

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.51  E-value=0.27  Score=21.94  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=17.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|++|+|||||++-+.+
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999799999999984

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.47  E-value=0.13  Score=24.37  Aligned_cols=21  Identities=29%  Similarity=0.561  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|.+|+|||||++-+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999198999999971

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.41  E-value=0.11  Score=24.80  Aligned_cols=25  Identities=24%  Similarity=0.387  Sum_probs=22.5

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             6089899998589981899999995
Q 000856          390 FPAGKTVAVVGGSGSGKSTVVSLIE  414 (1252)
Q Consensus       390 i~~g~~~~ivG~sGsGKSTl~~ll~  414 (1252)
                      +++|+.+.|.|++||||||+.--++
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             5588799998589898899999999

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.39  E-value=0.14  Score=24.08  Aligned_cols=22  Identities=32%  Similarity=0.250  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999849999868899998523
Q 000856         1040 SQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      .|||.|+.||||||+...|...
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
T ss_conf             9983799878899999999999

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.34  E-value=0.17  Score=23.50  Aligned_cols=35  Identities=29%  Similarity=0.349  Sum_probs=26.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf             9999849999868899998523779975699899316
Q 000856         1040 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI 1076 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1076 (1252)
                      -+-++||.||||||+++.|.+.+.  .+-+.+++-++
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~d~~   68 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDNDTF   68 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH--CCEEEEECHHH
T ss_conf             999889799889999999999865--15489832899

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=89.34  E-value=0.13  Score=24.26  Aligned_cols=23  Identities=13%  Similarity=0.330  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998499998688999985237
Q 000856         1040 SQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      .|||+|+.++|||||++.|.+..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHC
T ss_conf             99999077870999999999743

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.19  E-value=0.15  Score=23.82  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|++|+|||||++-+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999198999999961

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.14  E-value=0.15  Score=23.83  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             59999849999868899998523
Q 000856         1039 QSQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1039 e~vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      ..|+|+|+.|+|||||++.|.+-
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
T ss_conf             98999999998989999999809

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=89.11  E-value=0.13  Score=24.43  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899818999999951467
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      .+.+.||+|+||||+++++.+.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             389889799878889999999849

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=89.07  E-value=0.13  Score=24.40  Aligned_cols=21  Identities=19%  Similarity=0.445  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|++|+|||||++-+.+
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999899999999964

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=89.06  E-value=0.14  Score=24.09  Aligned_cols=46  Identities=17%  Similarity=0.483  Sum_probs=34.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCEEECCCC
Q ss_conf             899998589981899999995146799858988993166778898832014773678
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDNVDIKTLQLRWLRDQIGLVNQEP  450 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~  450 (1252)
                      +-+.++||+|||||-|++.|.++.+..  =+..|...+.         ..|||..+.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DV   95 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEV   95 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCEEE---------ECCEEECCH
T ss_conf             647998999988999999999873898--8986255114---------111110444

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.03  E-value=0.32  Score=21.39  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|.+|+|||||++-+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             899999899499999999973

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.01  E-value=0.14  Score=24.04  Aligned_cols=24  Identities=29%  Similarity=0.376  Sum_probs=20.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             899998589981899999995146
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      -.+||+|+..+|||||++.|.+..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHC
T ss_conf             879999699854999999998236

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=88.91  E-value=0.16  Score=23.70  Aligned_cols=27  Identities=19%  Similarity=0.183  Sum_probs=22.5

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             089899998589981899999995146
Q 000856          391 PAGKTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       391 ~~g~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      ..+..+.|.||+|+|||||++-+....
T Consensus        27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          27 LRAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             TCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             059879998699982999999999977

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.91  E-value=0.18  Score=23.25  Aligned_cols=21  Identities=29%  Similarity=0.461  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      +++++|++|+|||||++-+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999698999999970

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.90  E-value=0.28  Score=21.80  Aligned_cols=21  Identities=29%  Similarity=0.482  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|.+|+|||||++-+.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899789999999971

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.89  E-value=0.32  Score=21.35  Aligned_cols=21  Identities=33%  Similarity=0.495  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      ++.++|.+|+|||||++-+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899598999999970

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.88  E-value=0.14  Score=24.09  Aligned_cols=23  Identities=39%  Similarity=0.511  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      .++++|...||||||++.|+|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             69997689897999999996898

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.83  E-value=0.15  Score=23.88  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|++|+|||||++-+.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899598999999982

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.81  E-value=0.072  Score=26.39  Aligned_cols=24  Identities=25%  Similarity=0.520  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999984999986889999852377
Q 000856         1040 SQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      .|||.|.|||||||+.+.|...+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             999989997809999999999971

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.77  E-value=0.15  Score=23.84  Aligned_cols=21  Identities=43%  Similarity=0.710  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|++|+|||||++-+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999098999999982

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.76  E-value=0.17  Score=23.43  Aligned_cols=27  Identities=11%  Similarity=0.052  Sum_probs=24.1

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             860898999985899818999999951
Q 000856          389 FFPAGKTVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       389 ~i~~g~~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      =+++|+.+.|.|++|||||++..-++.
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             976897999988998878899999999

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.73  E-value=0.17  Score=23.43  Aligned_cols=24  Identities=29%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899818999999951467
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      +++++|.+|+|||||++-+.+...
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~~   26 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVED   26 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             999989899399999999818856

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.73  E-value=0.17  Score=23.50  Aligned_cols=27  Identities=15%  Similarity=0.118  Sum_probs=24.0

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             983795999984999986889999852
Q 000856         1034 RIRAGQSQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1034 ~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      -|++|+.+-|.|++|||||++..-+..
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             976897999988998878899999999

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=88.70  E-value=0.16  Score=23.59  Aligned_cols=26  Identities=38%  Similarity=0.439  Sum_probs=22.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC-CC
Q ss_conf             999985899818999999951467-99
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYD-PN  420 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~-~~  420 (1252)
                      .++++|...||||||++.|+|.-- |.
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~lP~   52 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDFLPR   52 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred             EEEEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf             599981898979999999968997887

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.70  E-value=0.41  Score=20.51  Aligned_cols=44  Identities=9%  Similarity=0.160  Sum_probs=28.2

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf             998888717777999674999999999861897299981594201
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI  565 (1252)
Q Consensus       521 ~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~  565 (1252)
                      +.+++++||+-. +...+...+.+.+.+-..+...|++|++.+.+
T Consensus       108 ~~kviIide~d~-l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~l  151 (207)
T d1a5ta2         108 GAKVVWVTDAAL-LTDAAANALLKTLEEPPAETWFFLATREPERL  151 (207)
T ss_dssp             SCEEEEESCGGG-BCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred             CCCEEEECHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH
T ss_conf             640477313442-00001499999998501111045530686551

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=88.67  E-value=0.16  Score=23.75  Aligned_cols=21  Identities=38%  Similarity=0.507  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|++|+|||||++-+.+
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999898999999971

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.65  E-value=0.15  Score=23.94  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|++|+|||||++-+.+
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999799899999999980

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.60  E-value=0.33  Score=21.28  Aligned_cols=21  Identities=14%  Similarity=0.374  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|..|+|||||++-+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             899999899098999999984

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=88.58  E-value=0.18  Score=23.26  Aligned_cols=26  Identities=23%  Similarity=0.244  Sum_probs=21.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             79599998499998688999985237
Q 000856         1037 AGQSQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1037 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      .+..+.|.|++|+|||||++-++.-.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             59879998699982999999999977

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.57  E-value=0.21  Score=22.82  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=22.7

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             98379599998499998688999985
Q 000856         1034 RIRAGQSQALVGASGSGKSSVIALIE 1059 (1252)
Q Consensus      1034 ~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1059 (1252)
                      -+++|+.+-|.|++||||||+..-++
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             95588799998589898899999999

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=88.56  E-value=0.16  Score=23.65  Aligned_cols=30  Identities=30%  Similarity=0.355  Sum_probs=22.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             8999985899818999999951467998589889
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLD  427 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~  427 (1252)
                      ..+||.|+.||||||+++.|...+    |-..++
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~   31 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ   31 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf             899997999988999999999868----985980

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=88.51  E-value=0.27  Score=21.88  Aligned_cols=30  Identities=20%  Similarity=0.388  Sum_probs=23.5

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             959999849999868899998523779975
Q 000856         1038 GQSQALVGASGSGKSSVIALIERFYDPTAG 1067 (1252)
Q Consensus      1038 Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1067 (1252)
                      ...+.|.||.|+||||+++.+...+....+
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~   72 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT   72 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             881688898999899999999999754468

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.47  E-value=0.34  Score=21.19  Aligned_cols=29  Identities=34%  Similarity=0.521  Sum_probs=22.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf             999984999986889999852-----37799756
Q 000856         1040 SQALVGASGSGKSSVIALIER-----FYDPTAGK 1068 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G~ 1068 (1252)
                      ++.++|.+|+|||||++-+..     -|.|+.|.
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~   40 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED   40 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             8999999997999999999739988545766452

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.43  E-value=0.18  Score=23.33  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899818999999951467
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      .++|-|..||||||+++.|...+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             899989987899999999999998

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=88.37  E-value=0.076  Score=26.19  Aligned_cols=25  Identities=32%  Similarity=0.420  Sum_probs=21.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9599998499998688999985237
Q 000856         1038 GQSQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1038 Ge~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      .-+|+|+|++++|||||++.|.+..
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             9789998899998999999985898

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=88.34  E-value=0.24  Score=22.33  Aligned_cols=161  Identities=18%  Similarity=0.146  Sum_probs=73.4

Q ss_pred             CEEEEEE-EEECCCEEEEECCCCCCHHHHHH-HHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHH
Q ss_conf             2000269-98379599998499998688999-985237799756998993168999788732208880466557555888
Q 000856         1027 VFKDFNL-RIRAGQSQALVGASGSGKSSVIA-LIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFD 1104 (1252)
Q Consensus      1027 vL~~isl-~I~~Ge~vaIVG~SGsGKSTL~~-lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIre 1104 (1252)
                      -|+++-- -+++|+.+-|.|++|+|||+++. ++..........+++...   +.+.+.++                  .
T Consensus        14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~---e~~~~~~~------------------~   72 (242)
T d1tf7a1          14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF---EETPQDII------------------K   72 (242)
T ss_dssp             THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES---SSCHHHHH------------------H
T ss_pred             HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCC---CCCHHHHH------------------H
T ss_conf             79885568996983999994799999999999999999856887420126---67999999------------------9


Q ss_pred             HHCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHCC--CCCEEEEECCCCCCCH
Q ss_conf             8522999999999999999807212586089867885689999889259-999999999713--9998998266789998
Q 000856         1105 NIAYGKEGATEAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQ-KQRIAIARAVLK--NPAILLLDEATSALDA 1181 (1252)
Q Consensus      1105 NL~~g~~~~sd~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQ-kQRlalARALl~--~p~ILiLDEpTSaLD~ 1181 (1252)
                      ...-.  ....++...   .-... .....+      ..+.-..++... ...+.-.+..++  +|+++++|--++-.+.
T Consensus        73 ~~~~~--~~~~~~~~~---~~~~~-~~~~~~------~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~  140 (242)
T d1tf7a1          73 NARSF--GWDLAKLVD---EGKLF-ILDASP------DPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ  140 (242)
T ss_dssp             HHGGG--TCCHHHHHH---TTSEE-EEECCC------CSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT
T ss_pred             HHHHC--CCCHHHHHH---HCCHH-HHHHCC------CHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             99984--998489887---14302-444210------3354444302458999999999988631222002078899876


Q ss_pred             ----HHHHHHHHHHHH-HC-CCCEEEEEECCCHH---------HH-CCCEEEEEE
Q ss_conf             ----979999999998-71-89759998149236---------53-069899994
Q 000856         1182 ----ESECVLQEALER-LM-RGRTTVLVAHRLST---------IR-GVDCIGVVQ 1220 (1252)
Q Consensus      1182 ----~te~~i~~~l~~-~~-~~~TvI~IsHrl~t---------i~-~~D~I~vl~ 1220 (1252)
                          .........+.. .. .++|+++++|....         .. .+|.++.++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~  195 (242)
T d1tf7a1         141 YDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR  195 (242)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf             0572678999999999998639716884210255422246762335362999988

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=88.34  E-value=0.24  Score=22.30  Aligned_cols=175  Identities=17%  Similarity=0.147  Sum_probs=90.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC--CCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCC-CCCCCHHHHH--CCCCCCCC
Q ss_conf             99998499998688999985237--7997569989931689997887322088804665-5755588885--22999999
Q 000856         1040 SQALVGASGSGKSSVIALIERFY--DPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPA-LFAASIFDNI--AYGKEGAT 1114 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~--~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~-LF~gTIreNL--~~g~~~~s 1114 (1252)
                      .+||+|+.|+|||||+..|+..-  ....|++. +|....+.......+++++-+.-.. .+.+ -+-|+  +||..+..
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~-~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETT-EEEEEEECCCSGGGH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCHHHCCCH-HCCCCCCCHHHHHHHCCEEEEECCCCCCCC-CCEEEECCCCHHHHH
T ss_conf             999994889809999999999709755306622-221135626988873876875102222343-210688068155433


Q ss_pred             HHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHH
Q ss_conf             9999999998072125860898678856899998892599999999997139998998---2667899989799999999
Q 000856         1115 EAEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLL---DEATSALDAESECVLQEAL 1191 (1252)
Q Consensus      1115 d~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARALl~~p~ILiL---DEpTSaLD~~te~~i~~~l 1191 (1252)
                       .++..++..+...=++-+-.           .....+-++.+-.|+.. +.|.++++   |.+  + |..  + ..+.+
T Consensus        82 -~e~~~al~~~D~avlvvda~-----------~Gv~~~t~~~~~~~~~~-~~p~~i~iNk~D~~--~-~~~--~-~l~~~  142 (267)
T d2dy1a2          82 -GEIRGALEAADAALVAVSAE-----------AGVQVGTERAWTVAERL-GLPRMVVVTKLDKG--G-DYY--A-LLEDL  142 (267)
T ss_dssp             -HHHHHHHHHCSEEEEEEETT-----------TCSCHHHHHHHHHHHHT-TCCEEEEEECGGGC--C-CHH--H-HHHHH
T ss_pred             -HHHHHHHCCCCCEEEEEECC-----------CCCCCHHHHHHHHHHHC-CCCCCCCCCCCCCC--C-CCH--H-HHHHH
T ss_conf             -55654312467338984235-----------77421157887765540-44310133320222--2-101--2-34468


Q ss_pred             HHHCCCCEEEEEECC----CHHHHC--CCEEEEEECCEEEEECCHHHHHC
Q ss_conf             987189759998149----236530--69899994977988149246620
Q 000856         1192 ERLMRGRTTVLVAHR----LSTIRG--VDCIGVVQDGRIVEQGSHSELVS 1235 (1252)
Q Consensus      1192 ~~~~~~~TvI~IsHr----l~ti~~--~D~I~vl~~G~ive~G~~~eLl~ 1235 (1252)
                      ++.+....-+.+-..    ..-+.+  ..+.+..++|.-.+.--|+++.+
T Consensus       143 ~~~lg~~vp~~~Pi~~~~~f~GvvDl~~~~a~~~~~~~~~~~~ip~~~~~  192 (267)
T d2dy1a2         143 RSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERE  192 (267)
T ss_dssp             HHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHH
T ss_pred             HHHHCCCCCEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEECCHHHHH
T ss_conf             88746586768600258832687624765489961898745407777899

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=88.34  E-value=0.17  Score=23.44  Aligned_cols=10  Identities=30%  Similarity=0.561  Sum_probs=4.4

Q ss_pred             CCCEEEEECC
Q ss_conf             9988887177
Q 000856          521 NPKILLLDEA  530 (1252)
Q Consensus       521 ~~~ililDe~  530 (1252)
                      +..+..+||-
T Consensus       249 ~~~~~~~dei  258 (443)
T d1g41a_         249 QNGIVFIDEI  258 (443)
T ss_dssp             HHCEEEEETG
T ss_pred             CCCCCCCCHH
T ss_conf             2675554223

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=88.21  E-value=0.17  Score=23.47  Aligned_cols=39  Identities=21%  Similarity=0.250  Sum_probs=30.1

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE-ECCCC
Q ss_conf             8608989999858998189999999514679985898-89931
Q 000856          389 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVL-LDNVD  430 (1252)
Q Consensus       389 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~-~~g~~  430 (1252)
                      .++++..+.+.||+|+|||++++.++++..   |.+. +++.+
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~  189 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPL  189 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCT
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEECCC
T ss_conf             899767699989999888999999999859---9789997742

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=88.19  E-value=0.23  Score=22.52  Aligned_cols=28  Identities=18%  Similarity=0.186  Sum_probs=24.4

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             6089899998589981899999995146
Q 000856          390 FPAGKTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       390 i~~g~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      +++|+.+.|.|++|+||||++.-++--.
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             6288599999179999899999999999

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.17  E-value=0.18  Score=23.22  Aligned_cols=25  Identities=24%  Similarity=0.278  Sum_probs=21.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             8999985899818999999951467
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      ..+.+.||+|+||||+++.+...+.
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             7699978999748799999999987

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=88.13  E-value=0.21  Score=22.76  Aligned_cols=28  Identities=18%  Similarity=0.253  Sum_probs=24.0

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9837959999849999868899998523
Q 000856         1034 RIRAGQSQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1034 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      -+++|+.+-|.|++|+||||+..-+.--
T Consensus        30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          30 GLESQSVTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf             8628859999917999989999999999

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=88.12  E-value=0.15  Score=23.82  Aligned_cols=28  Identities=29%  Similarity=0.495  Sum_probs=20.8

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             0898999985899818999999951467
Q 000856          391 PAGKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       391 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      ++-..+++|||+|+||||.+--|...+.
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9997999989999998999999999999

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=88.10  E-value=0.31  Score=21.50  Aligned_cols=33  Identities=27%  Similarity=0.294  Sum_probs=25.8

Q ss_pred             CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             2000269983795999984999986889999852
Q 000856         1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1027 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      .++.-.+.+ .|.-+.|.|+||+||||++..|..
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2           5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             178999999-999999981899998999999998

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=88.01  E-value=0.45  Score=20.20  Aligned_cols=27  Identities=30%  Similarity=0.453  Sum_probs=19.9

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             898999985899818999999951467
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      ....+.++||+|+||||.+--|...+.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             986899989999988999999999999

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.96  E-value=0.19  Score=23.11  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858998189999999514
Q 000856          395 TVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      +++++|.+|+|||||++-+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999998993999999999719

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.93  E-value=0.21  Score=22.74  Aligned_cols=33  Identities=21%  Similarity=0.448  Sum_probs=27.6

Q ss_pred             CEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             203886089899998589981899999995146
Q 000856          385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       385 ~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      |.=+.+-+|++.+|.|++|+|||||+.-+..-.
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEECCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             102563678877766799989899999999988

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.89  E-value=0.21  Score=22.80  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999984999986889999852377
Q 000856         1040 SQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      .|+|-|.-||||||+++.|...+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             899989987899999999999998

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.89  E-value=0.23  Score=22.51  Aligned_cols=26  Identities=15%  Similarity=0.330  Sum_probs=22.0

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             98999985899818999999951467
Q 000856          393 GKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       393 g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      ..-+.+.||+|||||++++.+.+...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf             86468766998883089999998748

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=87.83  E-value=0.4  Score=20.57  Aligned_cols=32  Identities=19%  Similarity=0.197  Sum_probs=25.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             99998589981899999995146799858988
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL  426 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~  426 (1252)
                      .+.|=|+-|+||||+++.|...+....+.+.+
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~   39 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF   39 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             99998886678999999999986569976998

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=87.83  E-value=0.19  Score=23.16  Aligned_cols=110  Identities=19%  Similarity=0.219  Sum_probs=53.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCCCCHHHH
Q ss_conf             59999849999868899998523779975699899316899978873220888046655755588885229999999999
Q 000856         1039 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATEAEV 1118 (1252)
Q Consensus      1039 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNL~~g~~~~sd~~i 1118 (1252)
                      =++.|+|+-||||||+.+.|..-|    |-..++--       +-+|..+    ++..-+...+.+.+..+. ...++.+
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~----g~~~is~g-------dllr~~~----~~~~~~~~~~~~~~~~~~-~v~~~~~   70 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHF----ELKHLSSG-------DLLRDNM----LRGTEIGVLAKTFIDQGK-LIPDDVM   70 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHB----CCEEEEHH-------HHHHHHH----HTTCHHHHHHHHHHHTTC-CCCHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH----CCEEECHH-------HHHHHHH----HHHHHHHHHHHHHHHHHH-HCCCHHH
T ss_conf             169998899998799999999997----98687189-------9999998----740156689998763664-1330344


Q ss_pred             HHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             999998072125860898678856899998892599999999997139998998266
Q 000856         1119 VEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEA 1175 (1252)
Q Consensus      1119 ~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARALl~~p~ILiLDEp 1175 (1252)
                      ....+.. +    ... .... .+-+ |  +..-..|.-.+.+ .+.-..++.||-+
T Consensus        71 ~~l~~~~-~----~~~-~~~~-~ild-G--fPr~~~q~~~l~~-~~~~~~vi~L~v~  116 (189)
T d2ak3a1          71 TRLVLHE-L----KNL-TQYN-WLLD-G--FPRTLPQAEALDR-AYQIDTVINLNVP  116 (189)
T ss_dssp             HHHHHHH-H----HHH-TTSC-EEEE-S--CCCSHHHHHHHHT-TCCCCEEEEEECC
T ss_pred             HHHHHHH-H----HHH-HHCC-CCCC-C--CCCHHHHHHHHHH-CCCCEEEEEEECC
T ss_conf             5445554-4----212-1058-4244-5--2100067887631-5753299997244

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=87.80  E-value=0.2  Score=22.96  Aligned_cols=26  Identities=15%  Similarity=0.303  Sum_probs=21.4

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             37959999849999868899998523
Q 000856         1036 RAGQSQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1036 ~~Ge~vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      ++.=++.+||..|||||||++-|.+-
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHCC
T ss_conf             98579999999998989999999668

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=87.79  E-value=0.21  Score=22.71  Aligned_cols=42  Identities=21%  Similarity=0.316  Sum_probs=32.9

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCC
Q ss_conf             8608989999858998189999999514679985-89889931
Q 000856          389 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-HVLLDNVD  430 (1252)
Q Consensus       389 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~~~g~~  430 (1252)
                      -+++|..+-+.||+||||||++--++....-..| -+++|...
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             9667358998057774789999999999870898799986544

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.78  E-value=0.19  Score=23.05  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858998189999999514
Q 000856          395 TVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      +++++|++|+|||||++-+.+-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999999993999999999629

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.74  E-value=0.18  Score=23.22  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858998189999999514
Q 000856          395 TVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      +++++|.+|+|||||++-+..-
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999999996789999999868

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=87.72  E-value=0.16  Score=23.73  Aligned_cols=38  Identities=26%  Similarity=0.471  Sum_probs=24.2

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf             59999849999868899998523779975699899316
Q 000856         1039 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDI 1076 (1252)
Q Consensus      1039 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 1076 (1252)
                      ..+++|||+|+||||.+-=|...+.-..-+|.+=..|.
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt   47 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT   47 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             79999899999989999999999997799479982321

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=87.70  E-value=0.21  Score=22.81  Aligned_cols=22  Identities=36%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858998189999999514
Q 000856          395 TVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      .+||||.+.+|||||++.|.|-
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             CEEEECCCCCCHHHHHHHHHCC
T ss_conf             1768899999899999999788

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=87.70  E-value=0.25  Score=22.15  Aligned_cols=30  Identities=20%  Similarity=0.148  Sum_probs=19.6

Q ss_pred             EECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             608989999858998189999999514679
Q 000856          390 FPAGKTVAVVGGSGSGKSTVVSLIERFYDP  419 (1252)
Q Consensus       390 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~  419 (1252)
                      .++|..+.+.|+-||||||+++.+.+-+..
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             799829999668776588999998764223

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.67  E-value=0.2  Score=22.97  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|.+|+|||||++-+..
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999799999999974

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.65  E-value=0.38  Score=20.79  Aligned_cols=21  Identities=29%  Similarity=0.618  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      ++.++|.+|+|||+|++-+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999598999999972

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.54  E-value=0.19  Score=23.07  Aligned_cols=21  Identities=24%  Similarity=0.602  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|.+|+|||||++-+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999198999999972

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.48  E-value=0.17  Score=23.42  Aligned_cols=26  Identities=27%  Similarity=0.445  Sum_probs=22.1

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89899998589981899999995146
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      ..-.++|.|+.|+|||||+.-+...+
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             81598611799888999999999987

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=87.44  E-value=0.27  Score=21.94  Aligned_cols=32  Identities=16%  Similarity=0.112  Sum_probs=27.5

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf             98379599998499998688999985237799
Q 000856         1034 RIRAGQSQALVGASGSGKSSVIALIERFYDPT 1065 (1252)
Q Consensus      1034 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1065 (1252)
                      ..++|..+.+.|+=||||||+++.+.+-+-..
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf             57998299996687765889999987642234

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.42  E-value=0.23  Score=22.47  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999984999986889999852377
Q 000856         1040 SQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      .+-+.||+|+||||+++++.+-+.
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             499987999988899999999987

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.35  E-value=0.2  Score=22.94  Aligned_cols=23  Identities=17%  Similarity=0.388  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      .+.+.||+|+||||+++.+++.+
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             59998999998499999999997

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=87.32  E-value=0.24  Score=22.33  Aligned_cols=43  Identities=16%  Similarity=0.238  Sum_probs=32.8

Q ss_pred             EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCCC
Q ss_conf             998379599998499998688999985237799756-9989931
Q 000856         1033 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK-VMIDGKD 1075 (1252)
Q Consensus      1033 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~-I~idG~d 1075 (1252)
                      =-+++|..+-|.|++||||||+...++....-..|. +++|.-.
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             99667358998057774789999999999870898799986544

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=87.24  E-value=0.22  Score=22.67  Aligned_cols=30  Identities=27%  Similarity=0.308  Sum_probs=22.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf             5999984999986889999852377997569989
Q 000856         1039 QSQALVGASGSGKSSVIALIERFYDPTAGKVMID 1072 (1252)
Q Consensus      1039 e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~id 1072 (1252)
                      ..|||+|.-||||||.++.|..-+    |-..+|
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~----g~~~i~   31 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY----SAVKYQ   31 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS----CEEECC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHC----CCEEEC
T ss_conf             899997999988999999999868----985980

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.09  E-value=0.48  Score=19.99  Aligned_cols=21  Identities=29%  Similarity=0.483  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      |+.+||.+|+|||||++-+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899789999999973

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.01  E-value=0.33  Score=21.25  Aligned_cols=28  Identities=32%  Similarity=0.536  Sum_probs=15.5

Q ss_pred             EEEEECCCCCCHHHHHHHHH--CCCCCCCC
Q ss_conf             99998589981899999995--14679985
Q 000856          395 TVAVVGGSGSGKSTVVSLIE--RFYDPNAG  422 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~--~~~~~~~G  422 (1252)
                      ++.++|.+|+|||||++-+.  ..+.|+-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf             999998999998999998846898887241

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.98  E-value=0.24  Score=22.32  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998499998688999985237
Q 000856         1040 SQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      .|||+|+..+|||||++.|++-.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHHHC
T ss_conf             79999699854999999998236

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.95  E-value=0.24  Score=22.30  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      |+.++|.+|+|||||++-+.+
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999198999999973

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=86.94  E-value=0.2  Score=22.97  Aligned_cols=24  Identities=25%  Similarity=0.272  Sum_probs=21.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             899998589981899999995146
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      ..+.+.||+|||||++++.+....
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCC
T ss_conf             079988969998899999986201

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.92  E-value=0.51  Score=19.76  Aligned_cols=21  Identities=33%  Similarity=0.463  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      ++.++|++|+|||||++-+.+
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999799999999984

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=86.86  E-value=0.22  Score=22.65  Aligned_cols=23  Identities=26%  Similarity=0.433  Sum_probs=9.7

Q ss_pred             EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             99984999986889999852377
Q 000856         1041 QALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1041 vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      +-+.||.|+||||+++++..-+.
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHCCC
T ss_conf             89879999738899999985038

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=86.82  E-value=0.15  Score=23.81  Aligned_cols=25  Identities=28%  Similarity=0.446  Sum_probs=18.3

Q ss_pred             CCCEEEEECCCCCCHHHHH-HHHHCC
Q ss_conf             7959999849999868899-998523
Q 000856         1037 AGQSQALVGASGSGKSSVI-ALIERF 1061 (1252)
Q Consensus      1037 ~Ge~vaIVG~SGsGKSTL~-~lL~rl 1061 (1252)
                      +-..+++|||+|+||||.+ |+-.++
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99899998999998899999999999

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=86.81  E-value=0.2  Score=22.86  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=27.0

Q ss_pred             EEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             0269983795999984999986889999852377
Q 000856         1030 DFNLRIRAGQSQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1030 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      |.=+.|-+|++.+|.|++|+|||||+..+.+-..
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             4125645787556867999887899999999775

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=86.81  E-value=0.2  Score=22.91  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=23.2

Q ss_pred             CCEEEEECCCCCCHHHHHHH-HHCCCCCCCCEEEEC
Q ss_conf             98999985899818999999-951467998589889
Q 000856          393 GKTVAVVGGSGSGKSTVVSL-IERFYDPNAGHVLLD  427 (1252)
Q Consensus       393 g~~~~ivG~sGsGKSTl~~l-l~~~~~~~~G~i~~~  427 (1252)
                      ..++.|+|++|||||++++. +........+-|.+|
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD   85 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD   85 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             265899907999689999999999984799889996

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.80  E-value=0.24  Score=22.27  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|.+|+|||||++-+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999298999999973

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=86.80  E-value=0.18  Score=23.32  Aligned_cols=23  Identities=26%  Similarity=0.364  Sum_probs=20.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             89999858998189999999514
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      =+++|||-..+|||||++.|.+-
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
T ss_conf             34888899999889999999779

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=86.75  E-value=0.15  Score=23.82  Aligned_cols=24  Identities=21%  Similarity=0.423  Sum_probs=19.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             898999985899818999999951
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +.=+++++|++|+|||||++-+.+
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHC
T ss_conf             668999999999988999988733

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=86.74  E-value=0.52  Score=19.72  Aligned_cols=29  Identities=31%  Similarity=0.496  Sum_probs=22.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf             999984999986889999852-----37799756
Q 000856         1040 SQALVGASGSGKSSVIALIER-----FYDPTAGK 1068 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G~ 1068 (1252)
                      |+.++|.+|+|||||++-+..     -|.|+.|.
T Consensus         6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~   39 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD   39 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             9999998995889999999729998654775343

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.66  E-value=0.27  Score=21.96  Aligned_cols=30  Identities=17%  Similarity=0.367  Sum_probs=24.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             9999849999868899998523779975699899
Q 000856         1040 SQALVGASGSGKSSVIALIERFYDPTAGKVMIDG 1073 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~idG 1073 (1252)
                      ++.|.|+-||||||+.+.|..-|    |-..++.
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~   33 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLAT   33 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH----CCCEEEC
T ss_conf             99998999999899999999996----9945834

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.59  E-value=0.42  Score=20.42  Aligned_cols=24  Identities=29%  Similarity=0.522  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999984999986889999852377
Q 000856         1040 SQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      |+.++|.+|+|||||++.+.+...
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~~   28 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVHD   28 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             999999899299999999972867

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.59  E-value=0.23  Score=22.50  Aligned_cols=45  Identities=27%  Similarity=0.335  Sum_probs=29.8

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
Q ss_conf             9998998266789998979999999998718975999814923653
Q 000856         1166 NPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIR 1211 (1252)
Q Consensus      1166 ~p~ILiLDEpTSaLD~~te~~i~~~l~~~~~~~TvI~IsHrl~ti~ 1211 (1252)
                      +..++++||.- .+.......+...+......+..|+++++.+.+.
T Consensus       109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~  153 (231)
T d1iqpa2         109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKII  153 (231)
T ss_dssp             SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred             CCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHCH
T ss_conf             72288614344-3121478987641124776447886148766565

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.40  E-value=0.23  Score=22.48  Aligned_cols=33  Identities=24%  Similarity=0.251  Sum_probs=24.8

Q ss_pred             CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             301203886089899998589981899999995146
Q 000856          382 IFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       382 ~l~~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      +|+.++   .|=..++++||.++|||||++.|.|..
T Consensus        24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             HHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf             997079---987999988999997999999980998

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.40  E-value=0.24  Score=22.29  Aligned_cols=22  Identities=18%  Similarity=0.398  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999858998189999999514
Q 000856          395 TVAVVGGSGSGKSTVVSLIERF  416 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~  416 (1252)
                      ++.++|.+|+|||||++-+.+-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999998993889999999719

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.38  E-value=0.27  Score=21.96  Aligned_cols=21  Identities=29%  Similarity=0.479  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      +|+++|.+|+|||||++-+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999198999999971

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.32  E-value=0.29  Score=21.67  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      +++++|+.|+|||||++-+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999198999999961

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.31  E-value=0.38  Score=20.80  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      ||+++|++|+|||||++-+.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899598999999982

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.30  E-value=0.25  Score=22.14  Aligned_cols=21  Identities=38%  Similarity=0.616  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|.+|+|||||++-+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999799698999999973

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.28  E-value=0.25  Score=22.21  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|+.|+|||||++-+..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999098999999961

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.28  E-value=0.27  Score=21.97  Aligned_cols=21  Identities=24%  Similarity=0.332  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|.+|+|||||++-+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999398999999982

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.27  E-value=0.55  Score=19.50  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      ||.++|..|+|||||++-+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             899999899098999999984

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.19  E-value=0.27  Score=21.95  Aligned_cols=21  Identities=24%  Similarity=0.476  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|.+|+|||||++-+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999498999999972

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.18  E-value=0.28  Score=21.79  Aligned_cols=21  Identities=38%  Similarity=0.665  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      +++++|+.|+|||||++-+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999098999999982

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.14  E-value=0.35  Score=21.07  Aligned_cols=29  Identities=28%  Similarity=0.374  Sum_probs=22.0

Q ss_pred             CEEEEECCCCCCHHHHHHHH-HCCCCCCCC
Q ss_conf             89999858998189999999-514679985
Q 000856          394 KTVAVVGGSGSGKSTVVSLI-ERFYDPNAG  422 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll-~~~~~~~~G  422 (1252)
                      -++.++|.+|+|||||++-+ .+.+.|+-|
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf             779999899998899999895098278888

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.13  E-value=0.36  Score=20.92  Aligned_cols=21  Identities=33%  Similarity=0.514  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      +++++|++|+|||||++-+.+
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999799899999999980

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.12  E-value=0.24  Score=22.28  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.8

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998499998688999985237
Q 000856         1041 QALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1041 vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      +-+.||+|+||||+++++.+-+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9998999998499999999997

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.07  E-value=0.27  Score=21.88  Aligned_cols=21  Identities=29%  Similarity=0.559  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|..|+|||||++-+.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             899999899088999999971

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=86.07  E-value=0.44  Score=20.29  Aligned_cols=29  Identities=28%  Similarity=0.241  Sum_probs=22.5

Q ss_pred             EEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             69983795999984999986889999852
Q 000856         1032 NLRIRAGQSQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1032 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      ++---.|.-+.|+|+||+||||++..|..
T Consensus         8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_           8 VLVDIYGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             EEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf             99999999999980899998999999998

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=86.05  E-value=0.26  Score=22.07  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             899998589981899999995146
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      =.++|||.+.+|||||++.+.+--
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHST
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             379997899998999999997789

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=85.99  E-value=0.25  Score=22.12  Aligned_cols=21  Identities=19%  Similarity=0.444  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      +++++|+.|+|||||++-+.+
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999899999999964

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.86  E-value=0.45  Score=20.16  Aligned_cols=28  Identities=29%  Similarity=0.517  Sum_probs=15.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             9999858998189999999514679985
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYDPNAG  422 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G  422 (1252)
                      ++.++|..|+|||||++-+.....|+.|
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~   31 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTG   31 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             9999999998889999988408979724

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=85.72  E-value=0.3  Score=21.51  Aligned_cols=21  Identities=33%  Similarity=0.504  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      ++.++|++|+|||||++.+..
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999898999999971

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.71  E-value=0.38  Score=20.78  Aligned_cols=37  Identities=30%  Similarity=0.545  Sum_probs=26.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHC-----CCCCCCCE-----EEECCCC
Q ss_conf             5999984999986889999852-----37799756-----9989931
Q 000856         1039 QSQALVGASGSGKSSVIALIER-----FYDPTAGK-----VMIDGKD 1075 (1252)
Q Consensus      1039 e~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G~-----I~idG~d 1075 (1252)
                      -+|+++|.+|+|||||++-+..     .+.|+.|.     +.+||.+
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~   51 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE   51 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCEE
T ss_conf             38999998992989999999719888544754211310388317679

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.69  E-value=0.24  Score=22.39  Aligned_cols=10  Identities=50%  Similarity=0.717  Sum_probs=5.3

Q ss_pred             ECCCEEEEEC
Q ss_conf             0898999985
Q 000856          391 PAGKTVAVVG  400 (1252)
Q Consensus       391 ~~g~~~~ivG  400 (1252)
                      ..|..+|++-
T Consensus        77 ~~g~~vaVia   86 (323)
T d2qm8a1          77 AAGHKVAVLA   86 (323)
T ss_dssp             HTTCCEEEEE
T ss_pred             HCCCCEEEEE
T ss_conf             3687513443

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=85.68  E-value=0.36  Score=20.91  Aligned_cols=23  Identities=22%  Similarity=0.488  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998589981899999995146
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      .+|++|+..+|||||++.|.|..
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHH
T ss_conf             99999345884999999997034

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.67  E-value=0.59  Score=19.29  Aligned_cols=29  Identities=34%  Similarity=0.502  Sum_probs=22.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf             999984999986889999852-----37799756
Q 000856         1040 SQALVGASGSGKSSVIALIER-----FYDPTAGK 1068 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G~ 1068 (1252)
                      ++.++|.+|+|||||++-+..     .++|+.|.
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~   39 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIED   39 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf             9999998995989999999709888545763120

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.63  E-value=0.28  Score=21.81  Aligned_cols=21  Identities=29%  Similarity=0.536  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|..|+|||||++-+.+
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999099999999970

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.48  E-value=0.29  Score=21.71  Aligned_cols=25  Identities=32%  Similarity=0.583  Sum_probs=22.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             8999985899818999999951467
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      +.++|-|.-||||||++++|...+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             1999989988859999999999873

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.43  E-value=0.6  Score=19.21  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      ++++||.+|+|||||++-+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             899999899499999999973

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.35  E-value=0.33  Score=21.22  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      ++.++|.+|+|||||++-+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999498999999985

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=85.33  E-value=0.36  Score=20.99  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=25.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             99998589981899999995146799858988
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYDPNAGHVLL  426 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~  426 (1252)
                      .+.|=|+-|+||||+++.|...+......+.+
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~   38 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILL   38 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf             99998887788999999999987346885699

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.32  E-value=0.32  Score=21.32  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|.+|+|||||++-+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999899999999964

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.32  E-value=0.075  Score=26.25  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999849999868899998523
Q 000856         1040 SQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      +|+++|++|+|||||++.|.|-
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             8999999999999999999589

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.30  E-value=0.35  Score=21.07  Aligned_cols=24  Identities=33%  Similarity=0.498  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999984999986889999852377
Q 000856         1040 SQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      +++++|.+|+|||||++-+.+...
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~~   26 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVED   26 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             999989899399999999818856

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.27  E-value=0.3  Score=21.61  Aligned_cols=44  Identities=23%  Similarity=0.385  Sum_probs=28.6

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf             998888717777999674999999999861897299981594201
Q 000856          521 NPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTI  565 (1252)
Q Consensus       521 ~~~ililDe~ts~lD~~~~~~i~~~l~~~~~~~t~i~ith~~~~~  565 (1252)
                      +.+++++||.-. +.......+...+.........+++++..+.+
T Consensus       101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i  144 (224)
T d1sxjb2         101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI  144 (224)
T ss_dssp             CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred             CEEEEEEECCCC-CCHHHHHHHHHHCCCCCCCEEEEECCCCHHHH
T ss_conf             359999824432-32157787752011233333665314743021

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.10  E-value=0.32  Score=21.30  Aligned_cols=21  Identities=33%  Similarity=0.566  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|+.|+|||||++-+.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999299999999971

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.91  E-value=0.35  Score=21.03  Aligned_cols=21  Identities=24%  Similarity=0.499  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      |+.+||++|+|||||++-+.+
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999399999999962

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=84.81  E-value=0.29  Score=21.72  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=25.1

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             989999858998189999999514679985898899
Q 000856          393 GKTVAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN  428 (1252)
Q Consensus       393 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g  428 (1252)
                      ...+.++||+|+|||.|++.|...+..  --+.+|.
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d~   85 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDM   85 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEG
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHCCC--CEEEECC
T ss_conf             658999778750069999999863367--7067415

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.74  E-value=0.2  Score=22.96  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|.+|+|||||++-+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999499999999970

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.70  E-value=0.36  Score=20.99  Aligned_cols=56  Identities=14%  Similarity=0.113  Sum_probs=31.0

Q ss_pred             CCHHHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             89259999999999713999--8998266789998979999999998718975999814
Q 000856         1149 LSGGQKQRIAIARAVLKNPA--ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 1205 (1252)
Q Consensus      1149 LSgGQkQRlalARALl~~p~--ILiLDEpTSaLD~~te~~i~~~l~~~~~~~TvI~IsH 1205 (1252)
                      -...+.+-.++++..+.++.  ++.++.++..+.......+.+.+... ..+|++++++
T Consensus       144 ~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~-~~r~i~Vltk  201 (299)
T d2akab1         144 PPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ-GQRTIGVITK  201 (299)
T ss_dssp             CTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT-CSSEEEEEEC
T ss_pred             CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-CCCEEEEEEC
T ss_conf             314799999999998627560356640345421125999999973867-7813667702

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.64  E-value=0.41  Score=20.53  Aligned_cols=73  Identities=21%  Similarity=0.354  Sum_probs=45.3

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCCCCCCCCHHHHHHHCEEECCCCCCCHHCHHHHHHCCCCC
Q ss_conf             86089899998589981899999995146799858-98899316677889883201477367877611199997159999
Q 000856          389 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAGH-VLLDNVDIKTLQLRWLRDQIGLVNQEPALFATTILENILYGKPE  467 (1252)
Q Consensus       389 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~Ni~~~~~~  467 (1252)
                      -++.|..+-+.||+||||||++-.++....-..|. +++|...  .+++++.+ +++.-           -+|+.+..+ 
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~-~~GvD-----------~d~il~~~~-  120 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAK-KLGVD-----------TDSLLVSQP-  120 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHH-HHTCC-----------GGGCEEECC-
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHH-HHCCC-----------HHHEEEECC-
T ss_conf             8666336999648874889999999998754898899998976--67999999-80998-----------899589669-


Q ss_pred             CCHHHHHHH
Q ss_conf             999999999
Q 000856          468 ATMAEVEAA  476 (1252)
Q Consensus       468 ~~~~~~~~~  476 (1252)
                      .+.|++.+.
T Consensus       121 ~~~E~~~~~  129 (269)
T d1mo6a1         121 DTGEQALEI  129 (269)
T ss_dssp             SSHHHHHHH
T ss_pred             CCHHHHHHH
T ss_conf             989999999

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.62  E-value=0.22  Score=22.61  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|++|+|||||++-+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999088999999984

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=84.60  E-value=0.36  Score=20.91  Aligned_cols=53  Identities=17%  Similarity=0.187  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHCCCCC--EEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC
Q ss_conf             59999999999713999--8998266789998979999999998718975999814
Q 000856         1152 GQKQRIAIARAVLKNPA--ILLLDEATSALDAESECVLQEALERLMRGRTTVLVAH 1205 (1252)
Q Consensus      1152 GQkQRlalARALl~~p~--ILiLDEpTSaLD~~te~~i~~~l~~~~~~~TvI~IsH 1205 (1252)
                      .+.+...+++..++++.  |+.+..++..........+.+.+.. ...+|++++++
T Consensus       153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~-~~~r~i~Vitk  207 (306)
T d1jwyb_         153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-EGKRTIGVITK  207 (306)
T ss_dssp             SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-SCSSEEEEEEC
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCC-CCCEEEEEEEC
T ss_conf             89999999999982777516876325631003499999997386-78858999820

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.59  E-value=0.37  Score=20.89  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      ++.+||.+|+|||||++-+.+
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899399999999971

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.54  E-value=0.3  Score=21.52  Aligned_cols=25  Identities=24%  Similarity=0.485  Sum_probs=22.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             5999984999986889999852377
Q 000856         1039 QSQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1039 e~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      ..|+|-|.-||||||++++|...+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             1999989988859999999999873

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.52  E-value=0.66  Score=18.91  Aligned_cols=29  Identities=28%  Similarity=0.470  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHC-----CCCCCCCE
Q ss_conf             999984999986889999852-----37799756
Q 000856         1040 SQALVGASGSGKSSVIALIER-----FYDPTAGK 1068 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r-----l~~p~~G~ 1068 (1252)
                      |+.++|.+|+|||||++-+..     -|.|+-|.
T Consensus         4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~   37 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf             9999999995989999999729999865872010

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.31  E-value=0.49  Score=19.92  Aligned_cols=21  Identities=24%  Similarity=0.545  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      |+.++|.+|+|||||++-+..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999198999999972

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=84.17  E-value=0.39  Score=20.70  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=14.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999849999868899998523
Q 000856         1040 SQALVGASGSGKSSVIALIERF 1061 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl 1061 (1252)
                      +|||||.-.+|||||+++|.+-
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             CEEEECCCCCCHHHHHHHHHCC
T ss_conf             1768899999899999999788

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.10  E-value=0.51  Score=19.79  Aligned_cols=38  Identities=26%  Similarity=0.326  Sum_probs=26.6

Q ss_pred             CCEEEEECCCCCCHHHHHHHH-HCCCCCCCCE----EEECCCC
Q ss_conf             959999849999868899998-5237799756----9989931
Q 000856         1038 GQSQALVGASGSGKSSVIALI-ERFYDPTAGK----VMIDGKD 1075 (1252)
Q Consensus      1038 Ge~vaIVG~SGsGKSTL~~lL-~rl~~p~~G~----I~idG~d 1075 (1252)
                      --++.++|.+|+|||||++-+ .+-+.|+-|-    +.++++.
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~~pTiG~~~~~~~~~~~~   48 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVN   48 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHCCCCCSCEEEEEEETTEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCEE
T ss_conf             4779999899998899999895098278888678999977699

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.08  E-value=0.48  Score=19.95  Aligned_cols=21  Identities=33%  Similarity=0.514  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      |+.++|.+|+|||||++-+..
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999678999999986

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.87  E-value=0.5  Score=19.87  Aligned_cols=44  Identities=23%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             EEEEEEECCCEEEEECCCCCCHHHHHHHHHCC-CCCCCCEEEECC
Q ss_conf             02699837959999849999868899998523-779975699899
Q 000856         1030 DFNLRIRAGQSQALVGASGSGKSSVIALIERF-YDPTAGKVMIDG 1073 (1252)
Q Consensus      1030 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl-~~p~~G~I~idG 1073 (1252)
                      |.=+.+-+||+++|.|.+|+|||||+.-+.+- -..+.+-+.+-+
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~~  104 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG  104 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEEE
T ss_pred             EEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             102563678877766799989899999999988761799699999

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.70  E-value=0.43  Score=20.38  Aligned_cols=21  Identities=19%  Similarity=0.340  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      |+.++|.+|+|||||++-+..
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999799999999974

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=83.69  E-value=0.61  Score=19.19  Aligned_cols=29  Identities=28%  Similarity=0.242  Sum_probs=22.9

Q ss_pred             EEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             69983795999984999986889999852
Q 000856         1032 NLRIRAGQSQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1032 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      ++-.-.|.-+.|+|+||+||||+...|..
T Consensus         9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2           9 VLVDVYGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf             99999999999980899999999999998

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.62  E-value=0.41  Score=20.50  Aligned_cols=21  Identities=29%  Similarity=0.518  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|.+|+|||+|++-+..
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999899899999999970

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.54  E-value=0.64  Score=18.99  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      +++++|+.|+|||||++-+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999299999999971

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=83.53  E-value=0.43  Score=20.34  Aligned_cols=54  Identities=20%  Similarity=0.357  Sum_probs=37.3

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCCCCCCCHHHHHHHCEE
Q ss_conf             8608989999858998189999999514679985-89889931667788988320147
Q 000856          389 FFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNAG-HVLLDNVDIKTLQLRWLRDQIGL  445 (1252)
Q Consensus       389 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~  445 (1252)
                      -++.|..+-+.||+||||||++..++....-..| .+++|...  .+++.+ .+.++.
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~~-a~~~Gv  107 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPVY-ARALGV  107 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHH-HHHTTC
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHHH-HHHHCC
T ss_conf             8667547898058765227999999999970799899998876--589999-998289

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.42  E-value=0.65  Score=18.98  Aligned_cols=28  Identities=39%  Similarity=0.507  Sum_probs=22.9

Q ss_pred             EEEEECCCCCCHHHHHHHH--HCCCCCCCC
Q ss_conf             9999849999868899998--523779975
Q 000856         1040 SQALVGASGSGKSSVIALI--ERFYDPTAG 1067 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL--~rl~~p~~G 1067 (1252)
                      |+.++|.+|+|||||++-+  ..-+.|+-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf             999998999998999998846898887241

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=83.41  E-value=0.39  Score=20.71  Aligned_cols=31  Identities=26%  Similarity=0.342  Sum_probs=14.3

Q ss_pred             HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             99860099888871777799967499999999
Q 000856          515 ARAMLKNPKILLLDEATSALDAGSESIVQEAL  546 (1252)
Q Consensus       515 ARal~~~~~ililDe~ts~lD~~~~~~i~~~l  546 (1252)
                      .+-...+..++++||.-. +....+..+...+
T Consensus        81 ~~~~~~~~~i~~iDe~~~-~~~~~~~~l~~~~  111 (239)
T d1ixsb2          81 LANSLEEGDILFIDEIHR-LSRQAEEHLYPAM  111 (239)
T ss_dssp             HHTTCCTTCEEEEETGGG-CCHHHHHHHHHHH
T ss_pred             HHHHCCCCCEEEEECCCC-CCHHHHHHHHHHH
T ss_conf             885103887344311001-1044787500124

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.33  E-value=0.41  Score=20.55  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999985899818999999951
Q 000856          395 TVAVVGGSGSGKSTVVSLIER  415 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~  415 (1252)
                      +++++|.+|+|||||++-+..
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999699999999971

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.31  E-value=0.42  Score=20.41  Aligned_cols=75  Identities=20%  Similarity=0.301  Sum_probs=48.1

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCE-EEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHHCCCCCC
Q ss_conf             98379599998499998688999985237799756-99899316899978873220888046655755588885229999
Q 000856         1034 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGK-VMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEG 1112 (1252)
Q Consensus      1034 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~-I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNL~~g~~~ 1112 (1252)
                      -++.|..+-|.|++|+||||+...+........|. |+||.-.  .++.+.+++ +++=+           +|+.+..+ 
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~~-~GvD~-----------d~il~~~~-  120 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAKK-LGVDT-----------DSLLVSQP-  120 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHHH-HTCCG-----------GGCEEECC-
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC--CCCHHHHHH-HCCCH-----------HHEEEECC-
T ss_conf             8666336999648874889999999998754898899998976--679999998-09988-----------99589669-


Q ss_pred             CCHHHHHHHHH
Q ss_conf             99999999999
Q 000856         1113 ATEAEVVEAAR 1123 (1252)
Q Consensus      1113 ~sd~~i~~al~ 1123 (1252)
                      .+.|++.+.++
T Consensus       121 ~~~E~~~~~~~  131 (269)
T d1mo6a1         121 DTGEQALEIAD  131 (269)
T ss_dssp             SSHHHHHHHHH
T ss_pred             CCHHHHHHHHH
T ss_conf             98999999999

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=83.30  E-value=0.37  Score=20.83  Aligned_cols=21  Identities=38%  Similarity=0.442  Sum_probs=11.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      .+-+.||.|+|||++++.+..
T Consensus        42 ~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             799889699988999999862

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=83.29  E-value=0.31  Score=21.43  Aligned_cols=10  Identities=0%  Similarity=-0.157  Sum_probs=3.9

Q ss_pred             HHHHHHHCCC
Q ss_conf             9999998072
Q 000856         1118 VVEAARAANV 1127 (1252)
Q Consensus      1118 i~~al~~a~l 1127 (1252)
                      ...+.+..|-
T Consensus       350 ae~~s~~~G~  359 (433)
T d1e9ra_         350 NEDMSLSLGE  359 (433)
T ss_dssp             HHHHHHHHCE
T ss_pred             HHHHHHHHCC
T ss_conf             9999997298

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=83.26  E-value=0.49  Score=19.93  Aligned_cols=24  Identities=17%  Similarity=0.400  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999984999986889999852377
Q 000856         1040 SQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      .|||+|.-.+|||||++.|.+...
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~~~   30 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGVWT   30 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             999993458849999999970344

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.16  E-value=0.58  Score=19.34  Aligned_cols=21  Identities=33%  Similarity=0.520  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      +++++|+.|+|||||++-+..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999098999999961

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.13  E-value=0.41  Score=20.55  Aligned_cols=22  Identities=23%  Similarity=0.451  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998589981899999995146
Q 000856          396 VAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       396 ~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      +.+.||+|+||||+++++++.+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9998899877558999999985

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=83.08  E-value=0.47  Score=20.08  Aligned_cols=55  Identities=20%  Similarity=0.280  Sum_probs=38.0

Q ss_pred             EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-EEEECCCCCCCCCHHHHHCCCEE
Q ss_conf             99837959999849999868899998523779975-69989931689997887322088
Q 000856         1033 LRIRAGQSQALVGASGSGKSSVIALIERFYDPTAG-KVMIDGKDIRRLNLKSLRLKIGL 1090 (1252)
Q Consensus      1033 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~~~~lR~~i~~ 1090 (1252)
                      =-++.|..+-|-|++||||||+...++.-..-..| -++||.-.  .++.+.+ +++++
T Consensus        52 GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~~a-~~~Gv  107 (268)
T d1xp8a1          52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPVYA-RALGV  107 (268)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHHH-HHTTC
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHHHH-HHHCC
T ss_conf             98667547898058765227999999999970799899998876--5899999-98289

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.04  E-value=0.46  Score=20.09  Aligned_cols=21  Identities=19%  Similarity=0.252  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      +|.++|.+|+|||||++-+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999298999999973

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.97  E-value=0.64  Score=18.99  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      |+.++|.+|+|||||++-+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999498999999972

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=82.97  E-value=0.42  Score=20.40  Aligned_cols=31  Identities=23%  Similarity=0.468  Sum_probs=23.6

Q ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf             999858998189999999514679985898899
Q 000856          396 VAVVGGSGSGKSTVVSLIERFYDPNAGHVLLDN  428 (1252)
Q Consensus       396 ~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g  428 (1252)
                      +.++||||+|||-+++.|..+++  ..-+.+|-
T Consensus        71 iLfiGPTGvGKTElAk~LA~~~~--~~~ir~D~  101 (364)
T d1um8a_          71 ILLIGPTGSGKTLMAQTLAKHLD--IPIAISDA  101 (364)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC--CCEEEHHH
T ss_conf             24418998637899999986443--53311122

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.81  E-value=0.48  Score=19.97  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      |+.++|.+|+|||||++-+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999398999999982

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.80  E-value=0.45  Score=20.21  Aligned_cols=22  Identities=18%  Similarity=0.466  Sum_probs=18.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHC
Q ss_conf             5999984999986889999852
Q 000856         1039 QSQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1039 e~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      -|+.++|.+|+|||||++-+..
T Consensus         3 ~KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           3 KKLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
T ss_conf             7999999899388999999971

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=82.67  E-value=0.33  Score=21.27  Aligned_cols=24  Identities=17%  Similarity=0.246  Sum_probs=19.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             899998589981899999995146
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      =++.++|++|+|||||++-+..-.
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             799999999987899999984488

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.62  E-value=0.45  Score=20.22  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=24.9

Q ss_pred             CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             200026998379599998499998688999985237
Q 000856         1027 VFKDFNLRIRAGQSQALVGASGSGKSSVIALIERFY 1062 (1252)
Q Consensus      1027 vL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1062 (1252)
                      +|++++   .|=-.|+|+|+.++|||||++.|++-.
T Consensus        24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             HHHCCC---CCEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf             997079---987999988999997999999980998

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.56  E-value=0.68  Score=18.78  Aligned_cols=28  Identities=32%  Similarity=0.477  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHH-CC----CCCCCC
Q ss_conf             99998499998688999985-23----779975
Q 000856         1040 SQALVGASGSGKSSVIALIE-RF----YDPTAG 1067 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~-rl----~~p~~G 1067 (1252)
                      +++++|..|+|||||++-+. +-    ++|+.|
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~   37 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG   37 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             999999999198999999972999865465301

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.48  E-value=0.51  Score=19.79  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      |+.++|..|+|||||++-+.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             899999899088999999971

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.45  E-value=0.7  Score=18.73  Aligned_cols=20  Identities=35%  Similarity=0.459  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHH
Q ss_conf             99998499998688999985
Q 000856         1040 SQALVGASGSGKSSVIALIE 1059 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~ 1059 (1252)
                      ++.++|..|+|||||+.-+.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~   27 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFV   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
T ss_conf             99999999949899999998

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=82.41  E-value=0.46  Score=20.14  Aligned_cols=34  Identities=29%  Similarity=0.466  Sum_probs=26.7

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEEC
Q ss_conf             599998499998688999985237------------7997569989
Q 000856         1039 QSQALVGASGSGKSSVIALIERFY------------DPTAGKVMID 1072 (1252)
Q Consensus      1039 e~vaIVG~SGsGKSTL~~lL~rl~------------~p~~G~I~id 1072 (1252)
                      =++||||.-.+|||||+++|.+--            +|.-|.+.+.
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~   56 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP   56 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf             3799978999989999999977898774789966703876899606

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.38  E-value=0.47  Score=20.05  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      +|.++|..|+|||||++-+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999799698999999973

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=82.29  E-value=0.43  Score=20.35  Aligned_cols=29  Identities=34%  Similarity=0.564  Sum_probs=12.8

Q ss_pred             HHCCCC-CEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             860099-888871777799967499999999
Q 000856          517 AMLKNP-KILLLDEATSALDAGSESIVQEAL  546 (1252)
Q Consensus       517 al~~~~-~ililDe~ts~lD~~~~~~i~~~l  546 (1252)
                      .+.++| .+++|||.=-+ ++.....+.+.+
T Consensus       116 ~~~~~~~~vvl~DeieKa-~~~V~~~lLqil  145 (315)
T d1r6bx3         116 AVIKHPHAVLLLDEIEKA-HPDVFNILLQVM  145 (315)
T ss_dssp             HHHHCSSEEEEEETGGGS-CHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHCCCCCC-CCHHHHHHHHHH
T ss_conf             777385430221222301-633766567762

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.98  E-value=0.58  Score=19.36  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=13.1

Q ss_pred             HHHHHHCCCCCEEEEECCCCCCC
Q ss_conf             99998600998888717777999
Q 000856          513 AIARAMLKNPKILLLDEATSALD  535 (1252)
Q Consensus       513 alARal~~~~~ililDe~ts~lD  535 (1252)
                      .+..|-...|.|+++||.=+-..
T Consensus        89 ~f~~A~~~~p~il~iDeid~l~~  111 (258)
T d1e32a2          89 AFEEAEKNAPAIIFIDELDAIAP  111 (258)
T ss_dssp             HHHHHHHTCSEEEEESSGGGTCC
T ss_pred             HHHHHHHCCCEEEEEHHHHHHCC
T ss_conf             99999864994998521113225

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=81.94  E-value=0.77  Score=18.37  Aligned_cols=34  Identities=15%  Similarity=0.289  Sum_probs=24.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEEC
Q ss_conf             8999985899818999999951467-998589889
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFYD-PNAGHVLLD  427 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~~-~~~G~i~~~  427 (1252)
                      ....++||+|+|||.+++.|...+- ....-+.+|
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~   88 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID   88 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             69999788862489999999998358875348873

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=81.85  E-value=0.46  Score=20.15  Aligned_cols=32  Identities=25%  Similarity=0.337  Sum_probs=23.4

Q ss_pred             EEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             038860898999985899818999999951467
Q 000856          386 FSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       386 ~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      +-...++| .+.++||+|||||.+++.+.+...
T Consensus       117 ~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         117 GGHRYASG-MVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             TTEEEESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             HHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             61436886-388877998508899999999863

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.79  E-value=0.51  Score=19.74  Aligned_cols=21  Identities=24%  Similarity=0.472  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999984999986889999852
Q 000856         1040 SQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      |++++|..|+|||||++-+.+
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999099999999970

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.75  E-value=0.48  Score=19.97  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999985899818999999951467
Q 000856          395 TVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       395 ~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      .+.+.||+|+||||+++++.+...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             499988999870546999999972

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=81.55  E-value=0.33  Score=21.19  Aligned_cols=23  Identities=17%  Similarity=0.420  Sum_probs=19.1

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHC
Q ss_conf             95999984999986889999852
Q 000856         1038 GQSQALVGASGSGKSSVIALIER 1060 (1252)
Q Consensus      1038 Ge~vaIVG~SGsGKSTL~~lL~r 1060 (1252)
                      -=++.++|++|+|||||++-+.+
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHC
T ss_conf             68999999999988999988733

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=81.50  E-value=0.21  Score=22.73  Aligned_cols=28  Identities=32%  Similarity=0.402  Sum_probs=24.7

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             8989999858998189999999514679
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFYDP  419 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~  419 (1252)
                      .|..+.++|+.|+||||+++.+.+..++
T Consensus        27 ~~h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          27 GIGGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             GGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             9970899889985299999999873798

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=81.44  E-value=0.85  Score=18.06  Aligned_cols=26  Identities=35%  Similarity=0.523  Sum_probs=19.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             95999984999986889999852377
Q 000856         1038 GQSQALVGASGSGKSSVIALIERFYD 1063 (1252)
Q Consensus      1038 Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1063 (1252)
                      ...+.+|||+|+||||.+.=|...+.
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             86899989999988999999999999

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=81.38  E-value=0.49  Score=19.88  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=21.4

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             8999985899818999999951467
Q 000856          394 KTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       394 ~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      -.++|=|+-|+||||+++.|...+.
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             2999989867789999999999817

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=81.10  E-value=0.18  Score=23.37  Aligned_cols=37  Identities=19%  Similarity=0.177  Sum_probs=28.5

Q ss_pred             CEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf             2038860898999985899818999999951467998
Q 000856          385 DFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNA  421 (1252)
Q Consensus       385 ~~~l~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~  421 (1252)
                      |.=+.+-+|++.+|+|++|+|||+|+..+..-..-+.
T Consensus        59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~   95 (276)
T d1fx0a3          59 DAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQN   95 (276)
T ss_dssp             TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTT
T ss_pred             ECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             5014546776676006778885799999776540467

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=81.04  E-value=0.14  Score=24.14  Aligned_cols=28  Identities=21%  Similarity=0.238  Sum_probs=22.7

Q ss_pred             ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             0898999985899818999999951467
Q 000856          391 PAGKTVAVVGGSGSGKSTVVSLIERFYD  418 (1252)
Q Consensus       391 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~  418 (1252)
                      +....+.+||++|+|||+++.-+.....
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf             7668967988898867799999999998

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.78  E-value=0.62  Score=19.11  Aligned_cols=26  Identities=27%  Similarity=0.209  Sum_probs=21.6

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             89899998589981899999995146
Q 000856          392 AGKTVAVVGGSGSGKSTVVSLIERFY  417 (1252)
Q Consensus       392 ~g~~~~ivG~sGsGKSTl~~ll~~~~  417 (1252)
                      ....++|+|..|.|||||++-+....
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             84089997799788899999999855

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=80.71  E-value=0.5  Score=19.86  Aligned_cols=41  Identities=22%  Similarity=0.223  Sum_probs=31.7

Q ss_pred             EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EECCCCCC
Q ss_conf             983795999984999986889999852377997569-98993168
Q 000856         1034 RIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKV-MIDGKDIR 1077 (1252)
Q Consensus      1034 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I-~idG~di~ 1077 (1252)
                      .++++..+.++||.|+|||++++.|.++..   |.+ .+++.+.+
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~r  191 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLDR  191 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTTT
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHCC---CCEEEEECCCHH
T ss_conf             899767699989999888999999999859---978999774201

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.69  E-value=0.62  Score=19.11  Aligned_cols=138  Identities=17%  Similarity=0.140  Sum_probs=69.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCHHHHH--CCCCCCCCH
Q ss_conf             999984999986889999852377--9975699899316899978873220888046655755588885--229999999
Q 000856         1040 SQALVGASGSGKSSVIALIERFYD--PTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNI--AYGKEGATE 1115 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~idG~di~~~~~~~lR~~i~~V~Q~~~LF~gTIreNL--~~g~~~~sd 1115 (1252)
                      .+||+|+.|||||||+..|+-.-.  ...|++. +|..+.........+.+++-+.-..+--..-+-|+  +||..+.. 
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~-   85 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT-   85 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS-
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEE-CCCEEEECCHHHHHCCCCCCCCEEEECCCCEEEEEECCCCHHHHH-
T ss_conf             999995898998999999999648534023365-184698565888751886001123431598389995278602269-


Q ss_pred             HHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHHH
Q ss_conf             999999998072125860898678856899998892599999999997139998998---26678999897999999999
Q 000856         1116 AEVVEAARAANVHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLL---DEATSALDAESECVLQEALE 1192 (1252)
Q Consensus      1116 ~~i~~al~~a~l~~~i~~lp~Gldt~vge~G~~LSgGQkQRlalARALl~~p~ILiL---DEpTSaLD~~te~~i~~~l~ 1192 (1252)
                      .++..++..+...=++-+-.+           ..-.+-++.+-.|+. .+-|.|++.   |-+-+..     ..+.+.++
T Consensus        86 ~e~~~~l~~~D~avlVvda~~-----------Gv~~~T~~~w~~a~~-~~lP~i~fINKmDr~~ad~-----~~~l~ei~  148 (276)
T d2bv3a2          86 IEVERSMRVLDGAIVVFDSSQ-----------GVEPQSETVWRQAEK-YKVPRIAFANKMDKTGADL-----WLVIRTMQ  148 (276)
T ss_dssp             TTHHHHHHHCCEEEEEEETTT-----------SSCHHHHHHHHHHHT-TTCCEEEEEECTTSTTCCH-----HHHHHHHH
T ss_pred             HHHHHHHHHHHHEEEECCCCC-----------CCCHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCC-----CHHHHHHH
T ss_conf             999999996300577322567-----------744669999999998-5999799986445654312-----12689999


Q ss_pred             HHCC
Q ss_conf             8718
Q 000856         1193 RLMR 1196 (1252)
Q Consensus      1193 ~~~~ 1196 (1252)
                      +.++
T Consensus       149 ~~l~  152 (276)
T d2bv3a2         149 ERLG  152 (276)
T ss_dssp             HTTC
T ss_pred             HHHC
T ss_conf             9859

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.56  E-value=0.9  Score=17.84  Aligned_cols=30  Identities=30%  Similarity=0.469  Sum_probs=25.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf             999984999986889999852377997569
Q 000856         1040 SQALVGASGSGKSSVIALIERFYDPTAGKV 1069 (1252)
Q Consensus      1040 ~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I 1069 (1252)
                      ++.++|..|+|||||++-+....-|+.|-.
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~   33 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf             999999999888999998840897972479