Citrus Sinensis ID: 000860
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1250 | 2.2.26 [Sep-21-2011] | |||||||
| Q7PC88 | 1426 | ABC transporter G family | yes | no | 0.991 | 0.868 | 0.750 | 0.0 | |
| Q8S628 | 1441 | Pleiotropic drug resistan | yes | no | 0.998 | 0.866 | 0.689 | 0.0 | |
| Q94A18 | 1416 | ABC transporter G family | no | no | 0.991 | 0.875 | 0.563 | 0.0 | |
| Q5Z9S8 | 1500 | Pleiotropic drug resistan | yes | no | 0.999 | 0.832 | 0.554 | 0.0 | |
| Q7PC86 | 1442 | ABC transporter G family | no | no | 0.992 | 0.859 | 0.564 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | no | no | 0.989 | 0.869 | 0.560 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | yes | no | 0.996 | 0.859 | 0.551 | 0.0 | |
| Q9XIE2 | 1469 | ABC transporter G family | no | no | 0.997 | 0.848 | 0.558 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.996 | 0.854 | 0.556 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.996 | 0.854 | 0.556 | 0.0 |
| >sp|Q7PC88|AB31G_ARATH ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2009 bits (5204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 938/1250 (75%), Positives = 1090/1250 (87%), Gaps = 11/1250 (0%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPPGSGKSTLLLALAGKLD +L K+G+ITYNG L++F V+R SAYI QTDNHIA
Sbjct: 188 MTLLLGPPGSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIA 247
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
ELTVRETLDFAARCQGA++ FA Y+KDLTRLEKER IRP+ EIDAFMKA+SV G+KHSVS
Sbjct: 248 ELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVS 307
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDYVL VLGLD+CSDT+VG++M+RGVSGGQ+KRVTTGEM VGPRKTLFMDEISTGLDSST
Sbjct: 308 TDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSST 367
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQIVKC+RNFVH MDAT LMALLQP PETF+LFDDL+LLS+GY+VYQGPR +V+ FFES
Sbjct: 368 TFQIVKCIRNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFES 427
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
LGFRLPPRKGVADFLQEVTSKKDQA+YWAD SKPY F+PVS+IA AF++S++G + +S L
Sbjct: 428 LGFRLPPRKGVADFLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKL 487
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
A PFDK + PSAL TK+A+S WE + CF RE+LLI RH+F Y FRTCQV FVG +T
Sbjct: 488 AAPFDKKSADPSALCRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTA 547
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+FLKTR HPT E+ G YL+C FFG+VHMMFN FSELP++ISRLPVFYKQRDN FHPAW
Sbjct: 548 TVFLKTRLHPTSEQFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAW 607
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
+WSIASW+LRVP S++EAVVWS +VY+T+G AP AGRFFRYMLLLFS+HQMALGL+RMMA
Sbjct: 608 SWSIASWLLRVPYSVLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMA 667
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
S+ARDMVIANTFGSA++L + LLGGF+IPK IK WW+W +WVSPLSYGQ AI+VNEFTA
Sbjct: 668 SLARDMVIANTFGSAAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTA 727
Query: 541 TRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLR 600
TRWM SAI + T+G N+L S PT+DYWYW+G+ V++ YA LFNN++TLALAYLNPLR
Sbjct: 728 TRWMTPSAISDTTIGLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLR 787
Query: 601 KSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYYVD 660
K++ V+ D EE + L +++ +KKGMI+PF PLTMTFHN++YYVD
Sbjct: 788 KARAVVLDDPNEETA-----------LVADANQVISEKKGMILPFKPLTMTFHNVNYYVD 836
Query: 661 TPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 720
P+ MRS+G+ E +LQLLSNVSG+FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY EGD
Sbjct: 837 MPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYTEGD 896
Query: 721 IKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEV 780
I+ISG+PKEQ TFARISGYVEQ D+HSPQVT+EESLWFSA+LRLPKEI+K+Q+ EFVE+V
Sbjct: 897 IRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESLWFSASLRLPKEITKEQKKEFVEQV 956
Query: 781 MSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
M LVELD+LR+ALVG PG+ GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV
Sbjct: 957 MRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1016
Query: 841 MRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQG 900
MR VRNTVDTGRTVVCTIHQPSI+IFEAFDELLLMKRGG+VIYGGKLG HSQ+++DYFQG
Sbjct: 1017 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYGGKLGTHSQVLVDYFQG 1076
Query: 901 LDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPDDS 960
++G+P I SGYNPATW+LEVTT A+EEK ++FA++YK S+Q+REVE++IK LSVPP+ S
Sbjct: 1077 INGVPPISSGYNPATWMLEVTTPALEEKYNMEFADLYKKSDQFREVEANIKQLSVPPEGS 1136
Query: 961 EPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQR 1020
EP+ F S YSQN LSQF +CLWKQNLVYWRSP+YN VRL FTT+AA ILG+VFWD+GS+R
Sbjct: 1137 EPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWDIGSKR 1196
Query: 1021 DSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLV 1080
SSQ L VMGALY++CLFLGV+NA+SVQPIVSIERTVFYREKAAGMY+PIP+AAAQGLV
Sbjct: 1197 TSSQDLITVMGALYSACLFLGVSNASSVQPIVSIERTVFYREKAAGMYAPIPYAAAQGLV 1256
Query: 1081 EIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLA 1140
EIPY+ QT+L+GVITYF + FERT KF+LYLVF FLTF+YFTF+GMM VGLTPNQHLA
Sbjct: 1257 EIPYILTQTILYGVITYFTIGFERTFSKFVLYLVFMFLTFTYFTFYGMMAVGLTPNQHLA 1316
Query: 1141 AIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVEPT 1200
A+ISSAFYSL NLLSGFLV +P IP WWIWFYYI PVAWTL+G+I SQLGDVE+MI EP
Sbjct: 1317 AVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMINEPL 1376
Query: 1201 FRGTVKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQRR 1250
F GTVKE+++ GY P M+G SAA+LV F FF FA SVK+LNFQRR
Sbjct: 1377 FHGTVKEFIEYYFGYKPNMIGVSAAVLVGFCALFFSAFALSVKYLNFQRR 1426
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8S628|PDR13_ORYSJ Pleiotropic drug resistance protein 13 OS=Oryza sativa subsp. japonica GN=PDR13 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1822 bits (4719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1260 (68%), Positives = 1045/1260 (82%), Gaps = 12/1260 (0%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPP SGKSTLLLALA KLD L KSG + YNG LD+F VQR SAYI QTDNHI
Sbjct: 182 MTLLLGPPASGKSTLLLALADKLDSQLKKSGEVAYNGMALDQFCVQRTSAYISQTDNHIG 241
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
ELTVRETLDFAA+CQGA++++ +K+L LEKER IRP+PEIDAFMK +S +KH++
Sbjct: 242 ELTVRETLDFAAKCQGASENWQECLKELVNLEKERGIRPSPEIDAFMKTASFRREKHNLV 301
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
+DYVL VLGLD+C+DT VGS+M RGVSGGQKKRVTTGEMI+GPRKTL MDEISTGLDSST
Sbjct: 302 SDYVLRVLGLDICADTPVGSDMERGVSGGQKKRVTTGEMIIGPRKTLLMDEISTGLDSST 361
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQIV C+RNFVH+M+AT LM+LLQP PETFELFDDL+LLS+G ++YQGP V+++F+S
Sbjct: 362 TFQIVNCMRNFVHEMEATVLMSLLQPAPETFELFDDLILLSEGKIIYQGPIKHVVDYFKS 421
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
LGF LPPRKG+ADFLQEVTSKKDQA+YW+D SK ++F+ SE+A FK S++G LE++L
Sbjct: 422 LGFSLPPRKGIADFLQEVTSKKDQAQYWSDQSKQHIFVSASEMAAVFKESQYGTYLEANL 481
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
+ +K L +K+AV K+ L R CFARE++LISR+RF Y FRTCQVAFVG +T
Sbjct: 482 SSSCG-NKDSALVLPRSKFAVPKFSLVRACFARELILISRNRFLYTFRTCQVAFVGIITS 540
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+FL+TR HP DE+ G LYL C FFG+VHMMFN F+E+ + ISRLPVFYKQRDN+FHPAW
Sbjct: 541 TLFLRTRLHPVDEQNGNLYLACLFFGLVHMMFNGFTEMTMTISRLPVFYKQRDNFFHPAW 600
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
A+S+ +WILR+P S IEAVVWSC+VYYT+GFAP RFFR+MLLLFSIHQMALGL+RMM
Sbjct: 601 AFSLPNWILRIPYSFIEAVVWSCVVYYTVGFAPTVDRFFRFMLLLFSIHQMALGLFRMMG 660
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
+IARDM IA+TFGSA +LAI LLGGF++PK IK WW W YW+SPL Y Q A+SVNEF+A
Sbjct: 661 AIARDMTIASTFGSAVLLAIFLLGGFVVPKGFIKPWWDWAYWISPLMYAQRAVSVNEFSA 720
Query: 541 TRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLR 600
+RW K S GN TVG N+L SHSLPTDD+W+W+GVGV+L Y+ FN + TLALA+LNPLR
Sbjct: 721 SRWSKVSVSGNMTVGTNILISHSLPTDDHWFWIGVGVLLAYSIFFNIMFTLALAFLNPLR 780
Query: 601 KSQVVIQSDDREENSVKKGVASQGCELKTTSSREDG--------KKKGMIMPFHPLTMTF 652
K Q ++ SD + V S + DG KKGMI+PF PLTMTF
Sbjct: 781 KPQSMVPSDAGDGRDVHINTDSNKNTIGEIFENNDGFEGQTECKSKKGMILPFQPLTMTF 840
Query: 653 HNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRK 712
HN++YYV+ P+ M++KG+ EK+LQLLS VSGIF P VLTALVG+SG+GKTTLMDVLAGRK
Sbjct: 841 HNVNYYVNMPKEMQAKGVPEKRLQLLSEVSGIFRPRVLTALVGASGSGKTTLMDVLAGRK 900
Query: 713 TGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQ 772
TGGYIEGDI+ISG+ KEQ TFARI+GYVEQ D+HSPQVT+EESLWFS+ LRLP +IS++
Sbjct: 901 TGGYIEGDIRISGHKKEQRTFARIAGYVEQNDIHSPQVTVEESLWFSSTLRLPNDISRET 960
Query: 773 RHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 832
RH FVEEVM+LVELD +R+ALVG G GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 961 RHAFVEEVMALVELDQIRYALVGKQGLTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1020
Query: 833 DARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQ 892
DARAAAIVMR VRNTVDTGRTVVCTIHQPSI+IFEAFDELLLMKRGGRVIYGG LGV+S
Sbjct: 1021 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGSLGVNSV 1080
Query: 893 IMIDYFQGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKS 952
MI+YFQG+ + I GYNPATW+LEVTT A EE+LG+DFA VYKNS Q+R VE+ I
Sbjct: 1081 DMINYFQGIPRVVPITEGYNPATWMLEVTTQASEERLGIDFATVYKNSYQFRNVENLIVE 1140
Query: 953 LSVPPDDSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSV 1012
LS+P +EPLKF+S +SQN L+QF +CL KQ+LVYWRSP+YN VRL FT+VAA+I GS+
Sbjct: 1141 LSIPASGTEPLKFSSEFSQNRLTQFMVCLRKQSLVYWRSPEYNVVRLFFTSVAAIIFGSI 1200
Query: 1013 FWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIP 1072
FW+VG +R+S++ + ++MGALYA+CLFLGVNNA+SVQP+VS+ERTV+YRE+AA MYS P
Sbjct: 1201 FWNVGMKRESTEDILLLMGALYAACLFLGVNNASSVQPVVSVERTVYYRERAANMYSSFP 1260
Query: 1073 FAAAQ---GLVEIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMM 1129
+AAAQ GLVEIPY+ VQTL+FG+ITYFMVN+ER +RK +LYL++ FLTF+YFTF+GM+
Sbjct: 1261 YAAAQVYHGLVEIPYIAVQTLIFGLITYFMVNYERNIRKLVLYLIYMFLTFTYFTFYGMV 1320
Query: 1130 VVGLTPNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQL 1189
VGLTP QH+A+++SSAFYSL NLLSGFL+PQ IPGWWIWFYYI PVAWTLRG+I+SQL
Sbjct: 1321 AVGLTPTQHMASVVSSAFYSLWNLLSGFLIPQSRIPGWWIWFYYICPVAWTLRGVITSQL 1380
Query: 1190 GDVETMIVEPTFRGTVKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQR 1249
GDV+T IV P F GTV E+L+++LG+ GM GA+ A+LVAFSVFFF I+A S+K +NFQR
Sbjct: 1381 GDVDTRIVGPGFDGTVHEFLQQNLGFEQGMTGATVAVLVAFSVFFFSIYAISIKMINFQR 1440
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q94A18|AB29G_ARATH ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1471 bits (3809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 706/1253 (56%), Positives = 930/1253 (74%), Gaps = 14/1253 (1%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPP SGK+TLLLALAGKLD +L +G +TYNG L+EF Q+ SAYI Q D H+
Sbjct: 175 MTLLLGPPSSGKTTLLLALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVG 234
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
+TV+ETLDF+ARCQG + + +L R EK+ I P PE+D FMK+ + G K S+
Sbjct: 235 VMTVQETLDFSARCQGVGTRYD-LLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLI 293
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY L +LGLD+C DTVVG EM+RG+SGGQKKRVTTGEMIVGP KTLFMDEISTGLDSST
Sbjct: 294 TDYTLRILGLDICKDTVVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 353
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
T+QIVKC++ V DAT LM+LLQP PETFELFDD++LLS+G +VYQGPR VL FFE+
Sbjct: 354 TYQIVKCLQEIVRFTDATVLMSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFET 413
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
GF+ P RKG ADFLQEVTS+KDQ +YWAD+ KPY ++ VSE + F++ G +LE L
Sbjct: 414 CGFKCPDRKGTADFLQEVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDL 473
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
+VP+D+ KSHP++L K++V K +LF+ C+ RE+LL+ R+ FFY+ +T Q+ + +
Sbjct: 474 SVPYDRFKSHPASLVFKKHSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIAS 533
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T++L+T +E GA+Y+ F M+ MFN F+EL ++I RLPVFYKQRD FHP W
Sbjct: 534 TVYLRTEMGTKNESDGAVYIGALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPW 593
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
+S+ +++L +P+SI E+VVW I YY +GFAP RF +++L++F QMA G++R +A
Sbjct: 594 TFSLPTFLLGIPISIFESVVWVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIA 653
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
+ R M++ANT G+ +L + LLGGFI+P+ I WW W YWVSP++Y A++VNE A
Sbjct: 654 ATCRSMILANTGGALVILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLA 713
Query: 541 TRWMKKSAIGNNT-VGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPL 599
RW+ + + N+T +G VL + TD WYW+GVG +L + LFN ++TLAL +LNPL
Sbjct: 714 PRWINQPSSDNSTSLGLAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPL 773
Query: 600 RKSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYYV 659
K Q V+ ++ EEN + G S+ ++K +GM++PF PLTM+F N++YYV
Sbjct: 774 EKQQAVVSKENTEENRAENGSKSKSIDVK----------RGMVLPFTPLTMSFDNVNYYV 823
Query: 660 DTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEG 719
D P+ M+ +G+ + KLQLL V+G+F PGVLTAL+G SGAGKTTLMDVLAGRKTGGYIEG
Sbjct: 824 DMPKEMKEQGVSKDKLQLLKEVTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG 883
Query: 720 DIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEE 779
DI+ISG+PK Q TFARISGY EQ D+HSPQVT++ESL +SA LRLPKE++K ++ FV+E
Sbjct: 884 DIRISGFPKRQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFVDE 943
Query: 780 VMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 839
VM LVEL+SL+ A+VG PG GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI
Sbjct: 944 VMELVELESLKDAVVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1003
Query: 840 VMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQ 899
VMR VRNTVDTGRTVVCTIHQPSI+IFEAFDELLL+KRGG+VIY G LG +S +I+YFQ
Sbjct: 1004 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYAGPLGQNSHKIIEYFQ 1063
Query: 900 GLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPDD 959
+ G+P I YNPATW+LEV++ A E KL +DFA YK S Y++ ++ +K LS PP
Sbjct: 1064 AIHGVPKIKEKYNPATWMLEVSSMAAEAKLEIDFAEHYKTSSLYQQNKNLVKELSTPPQG 1123
Query: 960 SEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQ 1019
+ L F++ +SQ+ L QF CLWKQ + YWR+P YN R FT AA++LGS+FW VG++
Sbjct: 1124 ASDLYFSTRFSQSLLGQFKSCLWKQWITYWRTPDYNLARFFFTLAAAVMLGSIFWKVGTK 1183
Query: 1020 RDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGL 1079
R+++ L V+GA+YA+ LF+GVNN++SVQP++++ER+VFYRE+AA MYS +P+A AQ +
Sbjct: 1184 RENANDLTKVIGAMYAAVLFVGVNNSSSVQPLIAVERSVFYRERAAEMYSALPYALAQVV 1243
Query: 1080 VEIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHL 1139
EIPYV +QT + +I Y M+ FE T+ KF + +F++F YFT++GMM V LTPNQ +
Sbjct: 1244 CEIPYVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSFMSFLYFTYYGMMTVALTPNQQV 1303
Query: 1140 AAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVEP 1199
AA+ + AFY L NL SGF++P+P IP WWIW+Y+I PVAWT+ G+I SQ GDVE I P
Sbjct: 1304 AAVFAGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVP 1363
Query: 1200 TFRG--TVKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQRR 1250
T+K Y++ GY + A +LV F++FF +FAF ++ LNFQ+R
Sbjct: 1364 GMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5Z9S8|PDR12_ORYSJ Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1465 bits (3792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 717/1292 (55%), Positives = 933/1292 (72%), Gaps = 43/1292 (3%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPP SGK+TLLLALAGKLD +L + G +TYNG+EL+EF Q+ +AYI QTD H+
Sbjct: 210 MTLLLGPPSSGKTTLLLALAGKLDPSLRRGGEVTYNGFELEEFVAQKTAAYISQTDVHVG 269
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
E+TV+ETLDF+ARCQG + + +L R EKE IRP PE+D FMKA+S+ G + S+
Sbjct: 270 EMTVKETLDFSARCQGVGTKYD-LLTELARREKEAGIRPEPEVDLFMKATSMEGVESSLQ 328
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY L +LGLD+C+DT+VG +M RG+SGGQKKRVTTGEMIVGP K LFMDEISTGLDSST
Sbjct: 329 TDYTLRILGLDICADTIVGDQMQRGISGGQKKRVTTGEMIVGPTKVLFMDEISTGLDSST 388
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQIVKC++ VH +AT LM+LLQP PETFELFDD++LLS+G +VYQGPR VLEFFES
Sbjct: 389 TFQIVKCLQQIVHLGEATILMSLLQPAPETFELFDDIILLSEGQIVYQGPREYVLEFFES 448
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
GFR P RKG ADFLQEVTSKKDQ +YWAD +PY ++ VSE A FK G LE+ L
Sbjct: 449 CGFRCPERKGTADFLQEVTSKKDQEQYWADKHRPYRYISVSEFAQRFKRFHVGLQLENHL 508
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
+VPFDK++SH +AL +K +VS EL + FA+E LLI R+ F Y+F+T Q+ V +
Sbjct: 509 SVPFDKTRSHQAALVFSKQSVSTTELLKASFAKEWLLIKRNSFVYIFKTIQLIIVALVAS 568
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+FL+T+ H + G +Y+ F ++ MFN F+EL + I+RLPVF+K RD F+PAW
Sbjct: 569 TVFLRTQMHTRNLDDGFVYIGALLFSLIVNMFNGFAELSLTITRLPVFFKHRDLLFYPAW 628
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
+++ + ILR+P SIIE++VW + YYT+GFAP A RFF+ +LL+F I QMA GL+R A
Sbjct: 629 IFTLPNVILRIPFSIIESIVWVIVTYYTIGFAPEADRFFKQLLLVFLIQQMAGGLFRATA 688
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
+ R M+IA T G+ ++L +LGGF++PK I WWIW YWVSPL YG +A++VNEF +
Sbjct: 689 GLCRSMIIAQTGGALALLIFFVLGGFLLPKAFIPKWWIWGYWVSPLMYGYNALAVNEFYS 748
Query: 541 TRWMKKSAIGNNTV----GYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYL 596
RWM K + NN V G ++ ++ TD W+W+G +L + FN + TL+L YL
Sbjct: 749 PRWMNKFVLDNNGVPKRLGIALMEGANIFTDKNWFWIGAAGLLGFTMFFNVLFTLSLVYL 808
Query: 597 NPLRKSQVVIQSDDREE--------NSVKKGV-----------------------ASQGC 625
NPL K Q VI + +E ++V+ G +S G
Sbjct: 809 NPLGKPQAVISEETAKEAEGNGDARHTVRNGSTKSNGGNHKEMREMRLSARLSNSSSNGV 868
Query: 626 -ELKTTSSREDGKKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGI 684
L + S E G ++GM++PF PL+M+F +++YYVD P M+ +G+ + +LQLL +V+G
Sbjct: 869 SRLMSIGSNEAGPRRGMVLPFTPLSMSFDDVNYYVDMPAEMKQQGVVDDRLQLLRDVTGS 928
Query: 685 FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQED 744
F P VLTAL+G SGAGKTTLMDVLAGRKTGGYIEGD++ISGYPK Q TFARISGY EQ D
Sbjct: 929 FRPAVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDMRISGYPKNQETFARISGYCEQND 988
Query: 745 VHSPQVTIEESLWFSANLRLP-----KEISKDQRHEFVEEVMSLVELDSLRHALVGSPGS 799
+HSPQVT+ ESL +SA LRLP +EI+ D + +FV+EVM LVELD+L+ ALVG PG
Sbjct: 989 IHSPQVTVRESLIYSAFLRLPEKIGDQEITDDIKIQFVDEVMELVELDNLKDALVGLPGI 1048
Query: 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 859
GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIH
Sbjct: 1049 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1108
Query: 860 QPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVLE 919
QPSI+IFEAFDELLL+KRGG+VIY G+LG +SQ MI+YF+ + G+P I YNPATW+LE
Sbjct: 1109 QPSIDIFEAFDELLLLKRGGQVIYSGQLGRNSQKMIEYFEAIPGVPKIKDKYNPATWMLE 1168
Query: 920 VTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPDDSEPLKFASTYSQNWLSQFFI 979
V++ A E +L +DFA YK S+ Y++ + + LS P + L F + YSQ+ + QF
Sbjct: 1169 VSSVAAEVRLNMDFAEYYKTSDLYKQNKVLVNQLSQPEPGTSDLHFPTKYSQSTIGQFRA 1228
Query: 980 CLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQRDSSQSLFMVMGALYASCLF 1039
CLWKQ L YWRSP YN VR +FT AL+LG++FW +G++ ++ SL MV+GA+Y + +F
Sbjct: 1229 CLWKQWLTYWRSPDYNLVRFSFTLFTALLLGTIFWKIGTKMGNANSLRMVIGAMYTAVMF 1288
Query: 1040 LGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLVEIPYVFVQTLLFGVITYFM 1099
+G+NN A+VQPIVSIERTVFYRE+AAGMYS +P+A AQ ++EIPYVFVQT + +I Y M
Sbjct: 1289 IGINNCATVQPIVSIERTVFYRERAAGMYSAMPYAIAQVVMEIPYVFVQTAYYTLIVYAM 1348
Query: 1100 VNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLAAIISSAFYSLSNLLSGFLV 1159
++F+ T KF + ++ +F YFT++GMM V ++PN +AAI ++AFYSL NL SGF +
Sbjct: 1349 MSFQWTAAKFFWFFFVSYFSFLYFTYYGMMTVAISPNHEVAAIFAAAFYSLFNLFSGFFI 1408
Query: 1160 PQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVEP-TFRGTVKEYLKESLGYGPG 1218
P+P IP WWIW+Y++ P+AWT+ G+I +Q GD+E +I P T+ Y+ GY
Sbjct: 1409 PRPRIPKWWIWYYWLCPLAWTVYGLIVTQYGDLEQIISVPGQSNQTISYYVTHHFGYHRK 1468
Query: 1219 MVGASAAMLVAFSVFFFGIFAFSVKFLNFQRR 1250
+ A +LV F+VFF ++A +K LNFQ R
Sbjct: 1469 FMPVVAPVLVLFAVFFAFMYAICIKKLNFQHR 1500
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC86|AB35G_ARATH ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1453 bits (3761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 709/1256 (56%), Positives = 924/1256 (73%), Gaps = 16/1256 (1%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPP SGK+TLLLALAGKLD +L+ SG +TYNG+ L+EF + SAYI Q D H+
Sbjct: 197 MTLLLGPPSSGKTTLLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVG 256
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
+TV+ETLDF+ARCQG + + +L R EK+ I P ++D FMKAS+ G K S+
Sbjct: 257 IMTVKETLDFSARCQGVGTRYD-LLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLI 315
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY L +LGLD+C DT+VG +M+RG+SGGQKKRVTTGEMIVGP KTLFMDEISTGLDSST
Sbjct: 316 TDYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 375
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQIVKC++ VH +AT L++LLQP PETF+LFDD++LLS+G +VYQGPR +LEFFES
Sbjct: 376 TFQIVKCLQQIVHLTEATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFES 435
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
GF+ P RKG ADFLQEVTSKKDQ +YW D ++PY ++PVSE A++FK G L + L
Sbjct: 436 FGFKCPERKGTADFLQEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNEL 495
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
+VP+DKSKSH +AL KY++ K EL ++C+ +E +L+ R+ FFY+F+T Q+ + +T
Sbjct: 496 SVPYDKSKSHKAALMFDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITS 555
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T++L+T H +E +Y+ F M+ MFN +E+ + I RLPVFYKQRD FHP W
Sbjct: 556 TLYLRTEMHTRNEIDANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPW 615
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
+++ +++L +P+SI E+ W + YY++G+AP A RFF+ L++F I QMA G++R +A
Sbjct: 616 TYTLPTFLLGIPISIFESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIA 675
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
S R M IANT G +L + L GGF++P+ I WW W YW+SPLSY +AI+VNE A
Sbjct: 676 STCRTMTIANTGGVLVLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFA 735
Query: 541 TRWMKKSAIGNNT--VGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNP 598
RWM K + GN+T +G +VL+ + D WYW+GVG +L + +FN TLAL YL+P
Sbjct: 736 PRWMNKMS-GNSTTRLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDP 794
Query: 599 LRKSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYY 658
L K+Q ++ ++ EE K G +++ E+++ S+ KKGM++PF PL M+F ++ Y+
Sbjct: 795 LGKAQAILPKEEDEEAKGKAG-SNKETEMESVSA-----KKGMVLPFTPLAMSFDDVKYF 848
Query: 659 VDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE 718
VD P MR +G+ E +LQLL V+ F PGVLTAL+G SGAGKTTLMDVLAGRKTGGYIE
Sbjct: 849 VDMPAEMREQGVQETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE 908
Query: 719 GDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVE 778
GD+++SG+PK+Q TFARISGY EQ D+HSPQVT+ ESL FSA LRL KE+SK+ + FV+
Sbjct: 909 GDVRVSGFPKKQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVD 968
Query: 779 EVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838
+VM LVEL LR A+VG PG GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA
Sbjct: 969 QVMELVELVDLRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1028
Query: 839 IVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYF 898
IVMRAVRNTVDTGRTVVCTIHQPSI+IFEAFDELLLMKRGG VIY G LG +S +++YF
Sbjct: 1029 IVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYF 1088
Query: 899 QGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPD 958
+ G+P IP YNPATW+LE ++ A E KLGVDFA +YK S + ++ ++ LSVPP
Sbjct: 1089 ESFPGVPKIPEKYNPATWMLEASSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQ 1148
Query: 959 DSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGS 1018
+ L FA+ +SQN QF CLWKQ YWRSP YN VR FT +L++GSVFW +G
Sbjct: 1149 GATDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGG 1208
Query: 1019 QRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQG 1078
+R + Q L MV+GA+YA+ +F+G+NN ++VQP+V++ERTVFYREKAAGMYS IP+A +Q
Sbjct: 1209 KRSNVQDLTMVIGAIYAAVVFVGINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAISQV 1268
Query: 1079 LVEIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQH 1138
E+PYV +QT + +I Y MV FE KFL ++ + +F Y+T++GMM V LTPNQ
Sbjct: 1269 TCELPYVLIQTTYYSLIIYSMVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQ 1328
Query: 1139 LAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIV- 1197
+A+I +SAFY + NL SGF +P+P IP WW+W+Y+I PVAWT+ G+I+SQ GDVET I
Sbjct: 1329 VASIFASAFYGIFNLFSGFFIPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIAL 1388
Query: 1198 ---EPTFRGTVKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQRR 1250
P TVK+Y+K+ G+ +G A +LV F+VFF IFAF +K LNFQ R
Sbjct: 1389 LGGAPGL--TVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1452 bits (3760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 704/1255 (56%), Positives = 905/1255 (72%), Gaps = 18/1255 (1%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
M LLLGPP SGK+TLLLALAGKLD L ++G +TYNG ++EF QR +AYIGQ D HI
Sbjct: 182 MALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIG 241
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
E+TVRET +AAR QG + + +L R EKE +I+P+P+ID FMKA S G+K +V
Sbjct: 242 EMTVRETFAYAARFQGVGSRYDM-LTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVM 300
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY+L +LGL++C+DT+VG +MLRG+SGGQKKRVTTGEM+VGP + LFMDEISTGLDSST
Sbjct: 301 TDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSST 360
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
T+QIV +RN+VH + TAL++LLQP PETF LFDD++L+++G ++Y+GPR V+EFFE+
Sbjct: 361 TYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFET 420
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
+GF+ PPRKGVADFLQEVTSKKDQ +YWA +PY F+ V E A AF+S G+ + L
Sbjct: 421 MGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDEL 480
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
A+PFDK+KSHP+AL T KY V EL +T F+RE LL+ R+ F Y F+ Q+ + FLT
Sbjct: 481 ALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTM 540
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+F +T E G+LY FF ++ +MFN SEL + I++LPVFYKQRD F+PAW
Sbjct: 541 TLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAW 600
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
+S+ W+L++P+S +EA + + I YY +GF P GR F+ +LL ++QMA L++M+A
Sbjct: 601 VYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVA 660
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
++ R+M++ANTFG+ +ML LGG ++ ++ IK WWIW YW+SP+ YGQ+AI NEF
Sbjct: 661 ALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFG 720
Query: 541 TRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLR 600
W + + T+G L S YWYW+G G +L + LFN TLAL +LN L
Sbjct: 721 HSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLG 780
Query: 601 KSQVVIQ----SDDREENSVK-KGVASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNI 655
K Q VI SD+ E S + +GV G KK+GM++PF P ++TF N+
Sbjct: 781 KPQAVIAEEPASDETELQSARSEGVVEAGAN----------KKRGMVLPFEPHSITFDNV 830
Query: 656 SYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG 715
Y VD PQ M +G E +L LL V+G F PGVLTAL+G SGAGKTTLMDVLAGRKTGG
Sbjct: 831 VYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 890
Query: 716 YIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHE 775
YI+G+I ISGYPK Q TFARISGY EQ D+HSP VT+ ESL +SA LRLPKE+ K++R
Sbjct: 891 YIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKI 950
Query: 776 FVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 835
F+EEVM LVEL LR ALVG PG GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR
Sbjct: 951 FIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1010
Query: 836 AAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMI 895
AAAIVMR VRNTVDTGRTVVCTIHQPSI+IFEAFDEL L+KRGG IY G LG S +I
Sbjct: 1011 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLI 1070
Query: 896 DYFQGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSV 955
+YF+ + GI I GYNPATW+LEV+TT+ E LGVDFA VYKNSE Y+ + IK LS
Sbjct: 1071 NYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQ 1130
Query: 956 PPDDSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWD 1015
P S+ L F + YSQ++L+Q LWKQ+ YWR+P Y AVR FT AL+ G++FWD
Sbjct: 1131 PAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWD 1190
Query: 1016 VGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAA 1075
+G + + Q L MG++Y + LFLG+ NAASVQP+V++ERTVFYRE+AAGMYS +P+A
Sbjct: 1191 LGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAF 1250
Query: 1076 AQGLVEIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTP 1135
AQ +EIPYV VQ +++G+I Y M+ FE T KF YL F + +F FTF+GMM V +TP
Sbjct: 1251 AQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTP 1310
Query: 1136 NQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETM 1195
N H+A+++SSAFY + NL SGFL+P+PS+P WW W+Y++ PVAWTL G+I+SQ GD+
Sbjct: 1311 NHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEP 1370
Query: 1196 IVEPTFRGTVKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQRR 1250
+ + +VK++++E GY G +G AAM V F + F IFA +K NFQ+R
Sbjct: 1371 MADSNM--SVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1446 bits (3744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 700/1269 (55%), Positives = 924/1269 (72%), Gaps = 23/1269 (1%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPPGSGK+TLLLALAGKLD +L SG +TYNG + EF +R +AYI Q D HI
Sbjct: 186 MTLLLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIG 245
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
E+TVRETL F+ARCQG + + +L R EK +I+P+ +ID +MKAS++GG++ SV
Sbjct: 246 EMTVRETLAFSARCQGVGTRYEM-LTELARREKAANIKPDHDIDIYMKASAMGGQESSVV 304
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY+L +LGLD+C+DTVVG+EMLRG+SGGQ+KRVTTGEM+VGP + LFMDEISTGLDSST
Sbjct: 305 TDYILKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSST 364
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
T+QIV +R +H + TA+++LLQP PET+ LFDD++LLSDG +VYQGPR VLEFFE
Sbjct: 365 TYQIVNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEF 424
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
+GFR P RKGVADFLQEVTS+KDQ +YW +PY F+PV + A+AF+S G+S+++ L
Sbjct: 425 MGFRCPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNEL 484
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
+ PFD+++SHP+ALAT+KY VS+ EL + RE+LL+ R+ F Y+F+ + + +
Sbjct: 485 SEPFDRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVM 544
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T F +T D G +YL +F + +MFN F+EL + + +LPVF+KQRD F PAW
Sbjct: 545 TTFFRTSMR-HDRDYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAW 603
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
A++I SWIL++P++ +E V+ I YY +GF P RFF+ LLL +++QM+ L+R +A
Sbjct: 604 AYTIPSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIA 663
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
I RDMV+++TFG S+LA LGGFI+ + +K WWIW YW+SPLSY Q+AIS NEF
Sbjct: 664 GIGRDMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLG 723
Query: 541 TRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLR 600
W + N T+G +VL S + T+ WYW+G+G +L Y LFN + T+AL+ L+P
Sbjct: 724 HSWSQILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFT 783
Query: 601 KSQVVIQSDDREENSV---------KKGVASQGCELKTT----------SSREDGKKKGM 641
S + D +E +K S+ EL+ + S+ +KGM
Sbjct: 784 DSHASMSEDALKEKHANLTGEVVEGQKDTKSRKQELELSHIADQNSGINSADSSASRKGM 843
Query: 642 IMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGK 701
++PF PL+++F+++ Y VD P+AM+++GI E +L LL VSG F PGVLTAL+G SGAGK
Sbjct: 844 VLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGK 903
Query: 702 TTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSAN 761
TTLMDVLAGRKTGGYIEGDI+ISGYPK+Q TFARISGY EQ D+HSP VT+ ESL FSA
Sbjct: 904 TTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAW 963
Query: 762 LRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPS 821
LRLP E+ + R F+EEVM LVEL SLR ALVG PG GLSTEQRKRLTIAVELVANPS
Sbjct: 964 LRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPS 1023
Query: 822 IIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRV 881
IIFMDEPTSGLDARAAAIVMR VRNTV+TGRTVVCTIHQPSI+IFEAFDEL LMKRGG
Sbjct: 1024 IIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEE 1083
Query: 882 IYGGKLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSE 941
IY G +G +S +I+YF+G+DG+ I GYNPATW+LEVT++A EE LGVDF+ +Y+ SE
Sbjct: 1084 IYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQSE 1143
Query: 942 QYREVESSIKSLSVPPDDSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAF 1001
Y+ + I+ LS PP S L F + YS+++++Q CLWKQN YWR+P Y AVRL F
Sbjct: 1144 LYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLF 1203
Query: 1002 TTVAALILGSVFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYR 1061
T V AL+ G++FW++G++ Q LF MG++YA+ L++GV N+ SVQP+V +ERTVFYR
Sbjct: 1204 TIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYR 1263
Query: 1062 EKAAGMYSPIPFAAAQGLVEIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFS 1121
E+AAGMYS P+A Q +E+PY+ VQTL++GV+ Y M+ FE T+ KFL YL F + T
Sbjct: 1264 ERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLL 1323
Query: 1122 YFTFFGMMVVGLTPNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTL 1181
YFTF+GMM VGLTPN+ +AAIISSAFY++ NL SG+L+P+P IP WW W+ +I PVAWTL
Sbjct: 1324 YFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTL 1383
Query: 1182 RGIISSQLGDVETMIVEPTFRGTVKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFS 1241
G+++SQ GD++ ++ T TV +++ + G+ + A + V F+V F +F+F+
Sbjct: 1384 YGLVASQFGDIQHVLEGDT--RTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFA 1441
Query: 1242 VKFLNFQRR 1250
+ NFQRR
Sbjct: 1442 IMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9XIE2|AB36G_ARATH ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1444 bits (3739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 711/1274 (55%), Positives = 933/1274 (73%), Gaps = 27/1274 (2%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPP SGK+TLLLALAGKLD +L SG ITYNG++LDEF ++ SAYI Q D H+
Sbjct: 199 MTLLLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVG 258
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
+TV+ETLDF+ARCQG + + +L R EK+ I P ++D FMKAS+ G K+S+
Sbjct: 259 IMTVKETLDFSARCQGVGTRYD-LLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLV 317
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY L +LGLD+C DT+VG +M+RG+SGGQKKRVTTGEMIVGP KTLFMDEISTGLDSST
Sbjct: 318 TDYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 377
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQIVKC++ VH +AT LM+LLQP PETF+LFDD++L+S+G +VYQGPR +LEFFES
Sbjct: 378 TFQIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFES 437
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
GF+ P RKG ADFLQEVTSKKDQ +YW + ++PY ++PVSE A+ +KS G + + L
Sbjct: 438 FGFKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNEL 497
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
AVPFDKS+ H +AL KY+VSK EL ++C+ +E LL+ R+ FFY+F+T Q+ + +T
Sbjct: 498 AVPFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITS 557
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+FL+T + +E LY+ FGM+ MFN F+E+ +++SRLPVFYKQRD F+P+W
Sbjct: 558 TLFLRTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSW 617
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
+S+ +++L +P SI+E+ W + YY++GFAP A RFF+ LL+F I QMA L+R++A
Sbjct: 618 TFSLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIA 677
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
S+ R M+IANT G+ ++L + LLGGF++PK I WW W YWVSPL+Y + + VNE A
Sbjct: 678 SVCRTMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFA 737
Query: 541 TRWMKKSAIGNNTV--GYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNP 598
RWM K A N+T+ G VL++ + WYW+ VG +L + LFN + TLAL YLNP
Sbjct: 738 PRWMNKMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNP 797
Query: 599 LRKSQVVIQSDDREE---------------NSVKKGVASQGCELKTTSSREDG---KKKG 640
L K ++ ++ E+ + ++G + G + +++ G KKG
Sbjct: 798 LGKKAGLLPEEENEDADQGKDPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAGNKKG 857
Query: 641 MIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAG 700
M++PF PL M+F ++ Y+VD P MR +G+ E +LQLL V+G F PGVLTAL+G SGAG
Sbjct: 858 MVLPFTPLAMSFDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAG 917
Query: 701 KTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSA 760
KTTLMDVLAGRKTGGYIEGD++ISG+PK Q TFARISGY EQ D+HSPQVT+ ESL FSA
Sbjct: 918 KTTLMDVLAGRKTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSA 977
Query: 761 NLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANP 820
LRLPKE+ KD++ FV++VM LVELDSLR ++VG PG GLSTEQRKRLTIAVELVANP
Sbjct: 978 FLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANP 1037
Query: 821 SIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880
SIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSI+IFEAFDEL+LMKRGG+
Sbjct: 1038 SIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQ 1097
Query: 881 VIYGGKLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNS 940
VIY G LG +S +++YF+ G+ IP YNPATW+LE ++ A E KL VDFA +Y S
Sbjct: 1098 VIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQS 1157
Query: 941 EQYREVESSIKSLSVPPDDSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLA 1000
++ ++ +K LSVPP + L FA+ +SQN QF CLWKQ YWRSP YN VR
Sbjct: 1158 ALHQRNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFI 1217
Query: 1001 FTTVAALILGSVFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFY 1060
FT +L++G+VFW +G R ++ L MV+GALYA+ +F+G+NN ++VQP+V++ERTVFY
Sbjct: 1218 FTLATSLLIGTVFWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFY 1277
Query: 1061 REKAAGMYSPIPFAAAQGLVEIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTF 1120
RE+AAGMYS +P+A +Q E+PYV +QT+ + +I Y MV FE KF ++ ++ +F
Sbjct: 1278 RERAAGMYSAMPYAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSF 1337
Query: 1121 SYFTFFGMMVVGLTPNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWT 1180
Y+T++GMM V LTPNQ +A+I +SAFY + NL SGF +P+P IP WWIW+Y+I PVAWT
Sbjct: 1338 LYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWT 1397
Query: 1181 LRGIISSQLGDVETMIV----EPTFRGTVKEYLKESLGYGPGMVGASAAMLVAFSVFFFG 1236
+ G+I SQ GDVET I P TVK+Y+++ G+ +G AA+L+AF+VFF
Sbjct: 1398 VYGLIVSQYGDVETRIQVLGGAPDL--TVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAF 1455
Query: 1237 IFAFSVKFLNFQRR 1250
IFAF ++ LNFQ R
Sbjct: 1456 IFAFCIRTLNFQTR 1469
|
Key factor that controls the extent of cell death in the defense response. Neccessary for both callose deposition and glucosinolate activation in response to pathogens. Required for limiting invasion by nonadapted powdery mildews. Confers resistance to cadmium (Cd) and lead (Pb), probably as an efflux pump of Cd2+ or Cd conjugates, and possibly, of chemicals that mediate pathogen resistance. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1440 bits (3728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 707/1271 (55%), Positives = 915/1271 (71%), Gaps = 26/1271 (2%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPPGSGK+TLLLALAG+L +L SG +TYNG ++EF +R +AYI Q D HI
Sbjct: 192 MTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIG 251
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
E+TVRETL F+ARCQG F + +L+R EK +I+P+ +IDAFMKA+++GG++ +V+
Sbjct: 252 EMTVRETLAFSARCQGVGSRFDM-LTELSRREKAANIKPDADIDAFMKAAAMGGQEANVN 310
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY+L +LGL++C+DT+VG EMLRG+SGGQ+KRVTTGEM+VGP + LFMDEISTGLDSST
Sbjct: 311 TDYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSST 370
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQIV +R VH + TA+++LLQP PET+ LFDD++LLSDG +VYQGPR +VLEFFES
Sbjct: 371 TFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFES 430
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
+GF+ P RKGVADFLQEVTSKKDQ +YWA KPY F+ V E +AF+S G+++ + L
Sbjct: 431 MGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANEL 490
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
AVPFDKSKSHP+ALATT+Y EL + REILL+ R+ F YMFRT Q+ V +
Sbjct: 491 AVPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAM 550
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+F +T+ G +Y+ FFG++ +MFN FSEL + + +LPVF+KQRD F+PAW
Sbjct: 551 TLFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAW 610
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
+++I SWIL++P++ IE + + YY +GF G FF+ LL+ +I+QMA L+R +
Sbjct: 611 SYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIG 670
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
AR+M++AN F S +L ++LGGFI+ +E +K WWIW YW+SP+ Y Q+AISVNE
Sbjct: 671 GAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMG 730
Query: 541 TRWMK--KSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNP 598
W K S+ N T+G VL S + + WYW+G G M+ + LFN + TLAL YL P
Sbjct: 731 HSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRP 790
Query: 599 LRKS-QVVIQSDDREENSVKKGVASQGCELKTTSSRE-----------------DGKKKG 640
S Q V + + +E+ + G L + S+R + ++G
Sbjct: 791 YGNSRQSVSEEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRG 850
Query: 641 MIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAG 700
M++PF PL+++F N+ Y VD PQ M+++G+ + +L+LL VSG F PGVLTAL+G SGAG
Sbjct: 851 MVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAG 910
Query: 701 KTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSA 760
KTTLMDVLAGRKTGGYIEG I ISGYPK+Q TFAR+SGY EQ D+HSPQVT+ ESL FSA
Sbjct: 911 KTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSA 970
Query: 761 NLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANP 820
LRLP+++ + R F+EEVM LVEL SLR ALVG PG GLSTEQRKRLTIAVELVANP
Sbjct: 971 WLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANP 1030
Query: 821 SIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880
SIIFMDEPTSGLDARAAAIVMR VRNTV+TGRTVVCTIHQPSI+IFEAFDEL LMKRGG
Sbjct: 1031 SIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGE 1090
Query: 881 VIYGGKLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNS 940
IY G LG HS +I YF+ + G+ I GYNPATW+LEVTT E+ LGVDF+++YK S
Sbjct: 1091 EIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKS 1150
Query: 941 EQYREVESSIKSLSVPPDDSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLA 1000
E Y+ ++ IK LS P DS L F + YSQ+ L+Q CLWKQNL YWR+P YNAVR
Sbjct: 1151 ELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFF 1210
Query: 1001 FTTVAALILGSVFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFY 1060
FTTV AL+ G++FWD+G + SQ LF MG++YA+ LF+GV N SVQP+V++ERTVFY
Sbjct: 1211 FTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFY 1270
Query: 1061 REKAAGMYSPIPFAAAQGLVEIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTF 1120
RE+AAGMYS P+A Q ++EIPY VQ ++G+I Y M+ FE T KF YL F T
Sbjct: 1271 RERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTL 1330
Query: 1121 SYFTFFGMMVVGLTPNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWT 1180
YFTF+GMM VGLTPN H+A+I+SSAFY++ NL SGF++P+P +P WW W+ + PVAWT
Sbjct: 1331 LYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWT 1390
Query: 1181 LRGIISSQLGDVETMIVEPTFRGT-VKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFA 1239
L G++ SQ GD+ET P GT VK +++ G+ +G A ++ AF+ F +F
Sbjct: 1391 LYGLVVSQFGDIET----PMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFG 1446
Query: 1240 FSVKFLNFQRR 1250
F++ NFQ+R
Sbjct: 1447 FAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1439 bits (3725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 707/1271 (55%), Positives = 914/1271 (71%), Gaps = 26/1271 (2%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPPGSGK+TLLLALAG+L +L SG +TYNG ++EF +R +AYI Q D HI
Sbjct: 192 MTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIG 251
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
E+TVRETL F+ARCQG F + +L+R EK +I+P+ +IDAFMKA+++GG++ +V+
Sbjct: 252 EMTVRETLAFSARCQGVGSRFDM-LTELSRREKAANIKPDADIDAFMKAAAMGGQEANVN 310
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY+L +LGL++C+DT+VG EMLRG+SGGQ+KRVTTGEM+VGP + LFMDEISTGLDSST
Sbjct: 311 TDYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSST 370
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQIV +R VH + TA+++LLQP PET+ LFDD++LLSDG +VYQGPR +VLEFFES
Sbjct: 371 TFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFES 430
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
GF+ P RKGVADFLQEVTSKKDQ +YWA KPY F+ V E +AF+S G+++ + L
Sbjct: 431 TGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANEL 490
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
AVPFDKSKSHP+ALATT+Y EL + REILL+ R+ F YMFRT Q+ V +
Sbjct: 491 AVPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAM 550
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+F +T+ G +Y+ FFG++ +MFN FSEL + + +LPVF+KQRD F+PAW
Sbjct: 551 TLFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAW 610
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
+++I SWIL++P++ IE + + YY +GF G FF+ LL+ +I+QMA L+R +
Sbjct: 611 SYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIG 670
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
AR+M++AN F S +L ++LGGFI+ +E +K WWIW YW+SP+ Y Q+AISVNE
Sbjct: 671 GAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMG 730
Query: 541 TRWMK--KSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNP 598
W K S+ N T+G VL S + + WYW+G G M+ + LFN + TLAL YL P
Sbjct: 731 HSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRP 790
Query: 599 LRKS-QVVIQSDDREENSVKKGVASQGCELKTTSSRE-----------------DGKKKG 640
S Q V + + +E+ + G L + S+R + ++G
Sbjct: 791 YGNSRQSVSEEELKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRG 850
Query: 641 MIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAG 700
M++PF PL+++F N+ Y VD PQ M+++G+ + +L+LL VSG F PGVLTAL+G SGAG
Sbjct: 851 MVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAG 910
Query: 701 KTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSA 760
KTTLMDVLAGRKTGGYIEG I ISGYPK+Q TFAR+SGY EQ D+HSPQVT+ ESL FSA
Sbjct: 911 KTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSA 970
Query: 761 NLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANP 820
LRLP+++ + R F+EEVM LVEL SLR ALVG PG GLSTEQRKRLTIAVELVANP
Sbjct: 971 WLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANP 1030
Query: 821 SIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880
SIIFMDEPTSGLDARAAAIVMR VRNTV+TGRTVVCTIHQPSI+IFEAFDEL LMKRGG
Sbjct: 1031 SIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGE 1090
Query: 881 VIYGGKLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNS 940
IY G LG HS +I YF+ + G+ I GYNPATW+LEVTT E+ LGVDF+++YK S
Sbjct: 1091 EIYAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKS 1150
Query: 941 EQYREVESSIKSLSVPPDDSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLA 1000
E Y+ ++ IK LS P DS L F + YSQ+ L+Q CLWKQNL YWR+P YNAVR
Sbjct: 1151 ELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFF 1210
Query: 1001 FTTVAALILGSVFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFY 1060
FTTV AL+ G++FWD+G + SQ LF MG++YA+ LF+GV N SVQP+V++ERTVFY
Sbjct: 1211 FTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFY 1270
Query: 1061 REKAAGMYSPIPFAAAQGLVEIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTF 1120
RE+AAGMYS P+A Q ++EIPY VQ ++G+I Y M+ FE T KF YL F T
Sbjct: 1271 RERAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTL 1330
Query: 1121 SYFTFFGMMVVGLTPNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWT 1180
YFTF+GMM VGLTPN H+A+I+SSAFY++ NL SGF++P+P +P WW W+ + PVAWT
Sbjct: 1331 LYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWT 1390
Query: 1181 LRGIISSQLGDVETMIVEPTFRGT-VKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFA 1239
L G++ SQ GD+ET P GT VK +++ G+ +G A ++ AF+ F +F
Sbjct: 1391 LYGLVVSQFGDIET----PMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFG 1446
Query: 1240 FSVKFLNFQRR 1250
F++ NFQ+R
Sbjct: 1447 FAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1250 | ||||||
| 297822715 | 1428 | ATPDR3/PDR3 [Arabidopsis lyrata subsp. l | 0.992 | 0.869 | 0.753 | 0.0 | |
| 3420057 | 1443 | putative ABC transporter [Arabidopsis th | 0.991 | 0.858 | 0.750 | 0.0 | |
| 42569461 | 1426 | ABC transporter G family member 31 [Arab | 0.991 | 0.868 | 0.750 | 0.0 | |
| 224059296 | 1432 | predicted protein [Populus trichocarpa] | 0.988 | 0.862 | 0.770 | 0.0 | |
| 356551861 | 1440 | PREDICTED: ABC transporter G family memb | 0.998 | 0.866 | 0.750 | 0.0 | |
| 255569339 | 1433 | ATP-binding cassette transporter, putati | 0.999 | 0.871 | 0.756 | 0.0 | |
| 357490693 | 1487 | Pleiotropic drug resistance ABC transpor | 0.998 | 0.839 | 0.727 | 0.0 | |
| 449450812 | 1486 | PREDICTED: LOW QUALITY PROTEIN: ABC tran | 0.994 | 0.836 | 0.723 | 0.0 | |
| 225434598 | 1415 | PREDICTED: ABC transporter G family memb | 0.988 | 0.873 | 0.749 | 0.0 | |
| 356566112 | 1421 | PREDICTED: ABC transporter G family memb | 0.992 | 0.873 | 0.709 | 0.0 |
| >gi|297822715|ref|XP_002879240.1| ATPDR3/PDR3 [Arabidopsis lyrata subsp. lyrata] gi|297325079|gb|EFH55499.1| ATPDR3/PDR3 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2023 bits (5242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 942/1250 (75%), Positives = 1093/1250 (87%), Gaps = 9/1250 (0%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPPGSGKSTLLLAL+GKLD +L K+G+ITYNG LD+F V+R SAYI QTDNHIA
Sbjct: 188 MTLLLGPPGSGKSTLLLALSGKLDKSLKKTGNITYNGENLDKFHVKRTSAYISQTDNHIA 247
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
ELTVRETLDFAARCQGA++ FA Y+KDLTRLEKER IRP+ EIDAFMKA+SV G+KHSVS
Sbjct: 248 ELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVSGEKHSVS 307
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDYVL VLGLD+CSDT+VG++M+RGVSGGQ+KRVTTGEM VGPRKTLFMDEISTGLDSST
Sbjct: 308 TDYVLRVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSST 367
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQIVKC+RNFVH MDAT LMALLQP PETF+LFDDL+LLS+GY+VYQGPR +V+ FFES
Sbjct: 368 TFQIVKCIRNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFES 427
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
LGFR+PPRKGVADFLQEVTSKKDQA+YW D SKPY F+PVS+IA AF++S++G + +S L
Sbjct: 428 LGFRIPPRKGVADFLQEVTSKKDQAQYWVDPSKPYQFIPVSDIAAAFRNSKYGHAADSKL 487
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
A PFDKS PSAL TK+A+S WE + CF REILLI+RHRF Y FRTCQVAFVG +T
Sbjct: 488 ATPFDKSSVDPSALCRTKFAISGWENLKVCFVREILLINRHRFLYTFRTCQVAFVGLVTA 547
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+FL+TR HPT E+ G YL+C FFG+VHMMFN FSELP++ISRLPVFYKQRDN FHPAW
Sbjct: 548 TVFLRTRLHPTSEQFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAW 607
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
+WSIASW+LRVP SI+EAVVWSC+VYY++G AP AGRFFRYMLLLFS+HQMALGL+RMMA
Sbjct: 608 SWSIASWLLRVPYSILEAVVWSCVVYYSVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMA 667
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
S+ARDMVIANTFGSA++L + LLGGF+IPK IK WW+W +WVSPLSYGQ AI+VNEFTA
Sbjct: 668 SLARDMVIANTFGSAAILVVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTA 727
Query: 541 TRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLR 600
TRWM SAI + ++G+N+L S PT+D WYW+G+ V++ YA LFNN++TLALAYLNPLR
Sbjct: 728 TRWMSPSAISDTSIGFNLLKLRSFPTNDNWYWIGIAVLIGYAILFNNVVTLALAYLNPLR 787
Query: 601 KSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYYVD 660
K++ V+ D +EE L +++E +KKGMI+PF PLTMTFHN++YYVD
Sbjct: 788 KARAVVLDDPKEETQTS---------LVADANQEKSQKKGMILPFKPLTMTFHNVNYYVD 838
Query: 661 TPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 720
P+ MRS+G+ E +LQLLSNVSG+FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY EGD
Sbjct: 839 MPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYTEGD 898
Query: 721 IKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEV 780
I+ISG+PKEQ TFARISGYVEQ D+HSPQVT+EESLWFSA+LRLPKEISK+Q+ EFVEEV
Sbjct: 899 IRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESLWFSASLRLPKEISKEQKKEFVEEV 958
Query: 781 MSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
M LVELD+LR+ALVG PG+ GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV
Sbjct: 959 MRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1018
Query: 841 MRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQG 900
MR VRNTVDTGRTVVCTIHQPSI+IFEAFDELLLMKRGG+VIYGGKLG HSQ+++DYFQG
Sbjct: 1019 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYGGKLGTHSQVLVDYFQG 1078
Query: 901 LDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPDDS 960
++G+P I SGYNPATW+LEVTT A+EEK ++FA++YK S+Q+REVE +IK LSVPP+ S
Sbjct: 1079 INGVPAISSGYNPATWMLEVTTPALEEKYNMEFADLYKKSDQFREVEENIKQLSVPPEGS 1138
Query: 961 EPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQR 1020
EP+ F S YSQN LSQF +CLWKQNLVYWRSP+YN VRL FTT+AA ILG+VFWD+GS+R
Sbjct: 1139 EPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWDIGSRR 1198
Query: 1021 DSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLV 1080
SSQ L VMGALY++CLFLGV+NA+SVQPIVSIERTVFYREKAAGMY+PIP+AAAQGLV
Sbjct: 1199 TSSQDLITVMGALYSACLFLGVSNASSVQPIVSIERTVFYREKAAGMYAPIPYAAAQGLV 1258
Query: 1081 EIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLA 1140
EIPY+ QT+L+GVITYF + FERT+ KF+LYLVF FLTF+YFTF+GMM VGLTPNQHLA
Sbjct: 1259 EIPYILTQTILYGVITYFTIGFERTLSKFVLYLVFMFLTFTYFTFYGMMAVGLTPNQHLA 1318
Query: 1141 AIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVEPT 1200
A+ISSAFYSL NLLSGFLV +P IP WWIWFYYI PVAWTL+G+I SQLGDVE+MI EP
Sbjct: 1319 AVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMINEPM 1378
Query: 1201 FRGTVKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQRR 1250
F GTVKE+++ GY P M+G SAA+LV F FF FA SVK+LNFQRR
Sbjct: 1379 FHGTVKEFIELYFGYKPNMIGVSAAVLVGFCALFFSAFALSVKYLNFQRR 1428
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3420057|gb|AAC31858.1| putative ABC transporter [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2009 bits (5206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 938/1250 (75%), Positives = 1090/1250 (87%), Gaps = 11/1250 (0%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPPGSGKSTLLLALAGKLD +L K+G+ITYNG L++F V+R SAYI QTDNHIA
Sbjct: 205 MTLLLGPPGSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIA 264
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
ELTVRETLDFAARCQGA++ FA Y+KDLTRLEKER IRP+ EIDAFMKA+SV G+KHSVS
Sbjct: 265 ELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVS 324
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDYVL VLGLD+CSDT+VG++M+RGVSGGQ+KRVTTGEM VGPRKTLFMDEISTGLDSST
Sbjct: 325 TDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSST 384
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQIVKC+RNFVH MDAT LMALLQP PETF+LFDDL+LLS+GY+VYQGPR +V+ FFES
Sbjct: 385 TFQIVKCIRNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFES 444
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
LGFRLPPRKGVADFLQEVTSKKDQA+YWAD SKPY F+PVS+IA AF++S++G + +S L
Sbjct: 445 LGFRLPPRKGVADFLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKL 504
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
A PFDK + PSAL TK+A+S WE + CF RE+LLI RH+F Y FRTCQV FVG +T
Sbjct: 505 AAPFDKKSADPSALCRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTA 564
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+FLKTR HPT E+ G YL+C FFG+VHMMFN FSELP++ISRLPVFYKQRDN FHPAW
Sbjct: 565 TVFLKTRLHPTSEQFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAW 624
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
+WSIASW+LRVP S++EAVVWS +VY+T+G AP AGRFFRYMLLLFS+HQMALGL+RMMA
Sbjct: 625 SWSIASWLLRVPYSVLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMA 684
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
S+ARDMVIANTFGSA++L + LLGGF+IPK IK WW+W +WVSPLSYGQ AI+VNEFTA
Sbjct: 685 SLARDMVIANTFGSAAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTA 744
Query: 541 TRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLR 600
TRWM SAI + T+G N+L S PT+DYWYW+G+ V++ YA LFNN++TLALAYLNPLR
Sbjct: 745 TRWMTPSAISDTTIGLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLR 804
Query: 601 KSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYYVD 660
K++ V+ D EE + L +++ +KKGMI+PF PLTMTFHN++YYVD
Sbjct: 805 KARAVVLDDPNEETA-----------LVADANQVISEKKGMILPFKPLTMTFHNVNYYVD 853
Query: 661 TPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 720
P+ MRS+G+ E +LQLLSNVSG+FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY EGD
Sbjct: 854 MPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYTEGD 913
Query: 721 IKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEV 780
I+ISG+PKEQ TFARISGYVEQ D+HSPQVT+EESLWFSA+LRLPKEI+K+Q+ EFVE+V
Sbjct: 914 IRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESLWFSASLRLPKEITKEQKKEFVEQV 973
Query: 781 MSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
M LVELD+LR+ALVG PG+ GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV
Sbjct: 974 MRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1033
Query: 841 MRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQG 900
MR VRNTVDTGRTVVCTIHQPSI+IFEAFDELLLMKRGG+VIYGGKLG HSQ+++DYFQG
Sbjct: 1034 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYGGKLGTHSQVLVDYFQG 1093
Query: 901 LDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPDDS 960
++G+P I SGYNPATW+LEVTT A+EEK ++FA++YK S+Q+REVE++IK LSVPP+ S
Sbjct: 1094 INGVPPISSGYNPATWMLEVTTPALEEKYNMEFADLYKKSDQFREVEANIKQLSVPPEGS 1153
Query: 961 EPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQR 1020
EP+ F S YSQN LSQF +CLWKQNLVYWRSP+YN VRL FTT+AA ILG+VFWD+GS+R
Sbjct: 1154 EPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWDIGSKR 1213
Query: 1021 DSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLV 1080
SSQ L VMGALY++CLFLGV+NA+SVQPIVSIERTVFYREKAAGMY+PIP+AAAQGLV
Sbjct: 1214 TSSQDLITVMGALYSACLFLGVSNASSVQPIVSIERTVFYREKAAGMYAPIPYAAAQGLV 1273
Query: 1081 EIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLA 1140
EIPY+ QT+L+GVITYF + FERT KF+LYLVF FLTF+YFTF+GMM VGLTPNQHLA
Sbjct: 1274 EIPYILTQTILYGVITYFTIGFERTFSKFVLYLVFMFLTFTYFTFYGMMAVGLTPNQHLA 1333
Query: 1141 AIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVEPT 1200
A+ISSAFYSL NLLSGFLV +P IP WWIWFYYI PVAWTL+G+I SQLGDVE+MI EP
Sbjct: 1334 AVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMINEPL 1393
Query: 1201 FRGTVKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQRR 1250
F GTVKE+++ GY P M+G SAA+LV F FF FA SVK+LNFQRR
Sbjct: 1394 FHGTVKEFIEYYFGYKPNMIGVSAAVLVGFCALFFSAFALSVKYLNFQRR 1443
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42569461|ref|NP_180555.2| ABC transporter G family member 31 [Arabidopsis thaliana] gi|75326886|sp|Q7PC88.1|AB31G_ARATH RecName: Full=ABC transporter G family member 31; Short=ABC transporter ABCG.31; Short=AtABCG31; AltName: Full=Probable pleiotropic drug resistance protein 3 gi|28144325|tpg|DAA00871.1| TPA_exp: PDR3 ABC transporter [Arabidopsis thaliana] gi|330253231|gb|AEC08325.1| ABC transporter G family member 31 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2009 bits (5204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 938/1250 (75%), Positives = 1090/1250 (87%), Gaps = 11/1250 (0%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPPGSGKSTLLLALAGKLD +L K+G+ITYNG L++F V+R SAYI QTDNHIA
Sbjct: 188 MTLLLGPPGSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIA 247
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
ELTVRETLDFAARCQGA++ FA Y+KDLTRLEKER IRP+ EIDAFMKA+SV G+KHSVS
Sbjct: 248 ELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVS 307
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDYVL VLGLD+CSDT+VG++M+RGVSGGQ+KRVTTGEM VGPRKTLFMDEISTGLDSST
Sbjct: 308 TDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSST 367
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQIVKC+RNFVH MDAT LMALLQP PETF+LFDDL+LLS+GY+VYQGPR +V+ FFES
Sbjct: 368 TFQIVKCIRNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFES 427
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
LGFRLPPRKGVADFLQEVTSKKDQA+YWAD SKPY F+PVS+IA AF++S++G + +S L
Sbjct: 428 LGFRLPPRKGVADFLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKL 487
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
A PFDK + PSAL TK+A+S WE + CF RE+LLI RH+F Y FRTCQV FVG +T
Sbjct: 488 AAPFDKKSADPSALCRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTA 547
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+FLKTR HPT E+ G YL+C FFG+VHMMFN FSELP++ISRLPVFYKQRDN FHPAW
Sbjct: 548 TVFLKTRLHPTSEQFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAW 607
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
+WSIASW+LRVP S++EAVVWS +VY+T+G AP AGRFFRYMLLLFS+HQMALGL+RMMA
Sbjct: 608 SWSIASWLLRVPYSVLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMA 667
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
S+ARDMVIANTFGSA++L + LLGGF+IPK IK WW+W +WVSPLSYGQ AI+VNEFTA
Sbjct: 668 SLARDMVIANTFGSAAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTA 727
Query: 541 TRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLR 600
TRWM SAI + T+G N+L S PT+DYWYW+G+ V++ YA LFNN++TLALAYLNPLR
Sbjct: 728 TRWMTPSAISDTTIGLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLR 787
Query: 601 KSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYYVD 660
K++ V+ D EE + L +++ +KKGMI+PF PLTMTFHN++YYVD
Sbjct: 788 KARAVVLDDPNEETA-----------LVADANQVISEKKGMILPFKPLTMTFHNVNYYVD 836
Query: 661 TPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 720
P+ MRS+G+ E +LQLLSNVSG+FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY EGD
Sbjct: 837 MPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYTEGD 896
Query: 721 IKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEV 780
I+ISG+PKEQ TFARISGYVEQ D+HSPQVT+EESLWFSA+LRLPKEI+K+Q+ EFVE+V
Sbjct: 897 IRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESLWFSASLRLPKEITKEQKKEFVEQV 956
Query: 781 MSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
M LVELD+LR+ALVG PG+ GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV
Sbjct: 957 MRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1016
Query: 841 MRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQG 900
MR VRNTVDTGRTVVCTIHQPSI+IFEAFDELLLMKRGG+VIYGGKLG HSQ+++DYFQG
Sbjct: 1017 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYGGKLGTHSQVLVDYFQG 1076
Query: 901 LDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPDDS 960
++G+P I SGYNPATW+LEVTT A+EEK ++FA++YK S+Q+REVE++IK LSVPP+ S
Sbjct: 1077 INGVPPISSGYNPATWMLEVTTPALEEKYNMEFADLYKKSDQFREVEANIKQLSVPPEGS 1136
Query: 961 EPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQR 1020
EP+ F S YSQN LSQF +CLWKQNLVYWRSP+YN VRL FTT+AA ILG+VFWD+GS+R
Sbjct: 1137 EPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWDIGSKR 1196
Query: 1021 DSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLV 1080
SSQ L VMGALY++CLFLGV+NA+SVQPIVSIERTVFYREKAAGMY+PIP+AAAQGLV
Sbjct: 1197 TSSQDLITVMGALYSACLFLGVSNASSVQPIVSIERTVFYREKAAGMYAPIPYAAAQGLV 1256
Query: 1081 EIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLA 1140
EIPY+ QT+L+GVITYF + FERT KF+LYLVF FLTF+YFTF+GMM VGLTPNQHLA
Sbjct: 1257 EIPYILTQTILYGVITYFTIGFERTFSKFVLYLVFMFLTFTYFTFYGMMAVGLTPNQHLA 1316
Query: 1141 AIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVEPT 1200
A+ISSAFYSL NLLSGFLV +P IP WWIWFYYI PVAWTL+G+I SQLGDVE+MI EP
Sbjct: 1317 AVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMINEPL 1376
Query: 1201 FRGTVKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQRR 1250
F GTVKE+++ GY P M+G SAA+LV F FF FA SVK+LNFQRR
Sbjct: 1377 FHGTVKEFIEYYFGYKPNMIGVSAAVLVGFCALFFSAFALSVKYLNFQRR 1426
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059296|ref|XP_002299812.1| predicted protein [Populus trichocarpa] gi|222847070|gb|EEE84617.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1985 bits (5143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 973/1262 (77%), Positives = 1105/1262 (87%), Gaps = 27/1262 (2%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPPGSGKSTLLLALAGKL NL KSG+ITYNG + D+F VQR SAYI QTDNHIA
Sbjct: 186 MTLLLGPPGSGKSTLLLALAGKLAKNLKKSGNITYNGQKFDDFYVQRTSAYISQTDNHIA 245
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
ELTVRETLDFAA QGA++ F Y++DL RLEKER++RPNPE+DAFMKASSVGGKKHS+S
Sbjct: 246 ELTVRETLDFAACWQGASEGFGGYMEDLVRLEKERNVRPNPEVDAFMKASSVGGKKHSIS 305
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDYVL VLGLD+CS+TVVG++MLRGVSGGQ+KRVTTGEMIVGPRKTLFMDEISTGLDSST
Sbjct: 306 TDYVLKVLGLDVCSETVVGNDMLRGVSGGQRKRVTTGEMIVGPRKTLFMDEISTGLDSST 365
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
T+QIVKC+ NFVH M+AT LMALLQP PETF+LFDDLVLLS+GY+VYQGPRAEVLEFFES
Sbjct: 366 TYQIVKCIGNFVHLMEATVLMALLQPAPETFDLFDDLVLLSEGYVVYQGPRAEVLEFFES 425
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
LGF+LPPRKGVADFLQEVTSKKDQA+YWAD SKPY+FLP SEIA AFK+S++GK ++S L
Sbjct: 426 LGFKLPPRKGVADFLQEVTSKKDQAQYWADQSKPYLFLPTSEIAKAFKNSKYGKYVDSEL 485
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
+VPFDKSKSH SAL+ TKYAVS+WELF+TCF+RE+LLISRHRF Y+FRTCQVAFVGF+TC
Sbjct: 486 SVPFDKSKSHVSALSKTKYAVSRWELFKTCFSREVLLISRHRFLYIFRTCQVAFVGFVTC 545
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+FL+TR HPTDE G LYL+C FFG+VHMMFN FSEL +LI RLPVFYKQRDN FHPAW
Sbjct: 546 TLFLRTRLHPTDEMNGNLYLSCLFFGLVHMMFNGFSELSLLIFRLPVFYKQRDNLFHPAW 605
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
WS+AS+ILR+P SI+EAVVWSC+VYYT+GFAPGAGRFFR+MLLLFSIHQMALGL+R M
Sbjct: 606 VWSVASFILRLPYSIVEAVVWSCVVYYTVGFAPGAGRFFRFMLLLFSIHQMALGLFRTMG 665
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
SIARD+V+ANTFGSA++LAI LLGGFIIPK IK WWIW YW+SPL+YGQ AISVNEF A
Sbjct: 666 SIARDLVVANTFGSAALLAIFLLGGFIIPKAMIKPWWIWGYWLSPLTYGQRAISVNEFGA 725
Query: 541 TRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLN--- 597
RW+KKS+ GNNTVG N+L+ HSLP+ DYWYW+GVGV+LLYA LFN I+T AL YLN
Sbjct: 726 ERWIKKSSFGNNTVGNNILYQHSLPSSDYWYWIGVGVLLLYALLFNIIVTWALTYLNLIN 785
Query: 598 -------PLRKSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKGMIMPFHPLTM 650
L K++ V +D +ENS + K KGMI+PF PLTM
Sbjct: 786 TMCWLITALTKARTVAPADVTQENS---------------DGNDGSKNKGMILPFQPLTM 830
Query: 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG 710
TFHN++Y+VD P+ M +GI EKKLQLLS VSG+FSPGVLTALVGSSGAGKTTLMDVLAG
Sbjct: 831 TFHNVNYFVDMPKEMSKQGITEKKLQLLSYVSGVFSPGVLTALVGSSGAGKTTLMDVLAG 890
Query: 711 RKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISK 770
RKTGGYIEGDIKISGYPKEQ TFARISGYVEQ D+HSPQ+TIEESL FS++LRLPKE+SK
Sbjct: 891 RKTGGYIEGDIKISGYPKEQRTFARISGYVEQNDIHSPQLTIEESLLFSSSLRLPKEVSK 950
Query: 771 DQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTS 830
+QR EFVEEVM LVELD+LR ALVG PGS GLSTEQRKRLTIAVELVANPSIIFMDEPTS
Sbjct: 951 EQRVEFVEEVMRLVELDTLRQALVGLPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1010
Query: 831 GLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVH 890
GLDARAAAIVMR VRNTVDTGRTVVCTIHQPSI+IFEAFDELLLMKRGGRVIYGGKLGVH
Sbjct: 1011 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVH 1070
Query: 891 SQIMIDYFQGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSI 950
S+IMIDYFQG+ G+P P GYNPATW+LEVTT VEE++G DFA +Y+ S QYREVE+SI
Sbjct: 1071 SKIMIDYFQGIKGVPPCPDGYNPATWMLEVTTPTVEERVGEDFAELYRKSSQYREVEASI 1130
Query: 951 KSLSVPPDDSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILG 1010
LS PP SEPLKF STY+++ LSQF+ICLWKQNLVYWRSPQYN VRL FT +AALI+G
Sbjct: 1131 LHLSSPPAGSEPLKFESTYARDALSQFYICLWKQNLVYWRSPQYNGVRLCFTVIAALIIG 1190
Query: 1011 SVFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSP 1070
SVFW++GS+RDS+Q+L +VMGALY+SC+FLGVNNA+SVQP+VSIERTVFYREKAAGMYSP
Sbjct: 1191 SVFWNIGSKRDSTQALSVVMGALYSSCMFLGVNNASSVQPVVSIERTVFYREKAAGMYSP 1250
Query: 1071 IPFAAAQ--GLVEIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGM 1128
+ +A AQ GLVEIPY+ VQT+L+G+ITYFMV+FERT KF L+LVF FLTF+YFTF+GM
Sbjct: 1251 LSYAVAQVTGLVEIPYILVQTILYGIITYFMVDFERTAGKFFLFLVFMFLTFTYFTFYGM 1310
Query: 1129 MVVGLTPNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQ 1188
M VGLTP+QHLAA+ISSAFYSL NLLSGFLVPQPSIPGWWIWFYYI P+AWTLRG+I SQ
Sbjct: 1311 MAVGLTPSQHLAAVISSAFYSLWNLLSGFLVPQPSIPGWWIWFYYICPIAWTLRGVICSQ 1370
Query: 1189 LGDVETMIVEPTFRGTVKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQ 1248
LGDVET+IV P F GTVK+YL+ + GYGP M+GAS A LV F + FF +FA SVKFLNFQ
Sbjct: 1371 LGDVETIIVGPGFEGTVKKYLEVTFGYGPNMIGASIAALVGFCLLFFTVFALSVKFLNFQ 1430
Query: 1249 RR 1250
+R
Sbjct: 1431 KR 1432
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356551861|ref|XP_003544291.1| PREDICTED: ABC transporter G family member 31-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1977 bits (5121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 944/1257 (75%), Positives = 1101/1257 (87%), Gaps = 9/1257 (0%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPPG+GK++LLLALAGKLD NL +GSITYNG ELDEF V+R SAYI QTD+HIA
Sbjct: 186 MTLLLGPPGAGKTSLLLALAGKLDSNLKTTGSITYNGHELDEFYVRRTSAYISQTDDHIA 245
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
ELTVRETLDF ARCQGA FAAY +L R E ER+IRP+PE+DAFMKASSVGGKKHSV+
Sbjct: 246 ELTVRETLDFGARCQGAK-GFAAYTDELGRREIERNIRPSPEVDAFMKASSVGGKKHSVN 304
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY+L VLGLD+CSDT+VG++MLRGVSGGQ+KRVTTGEMIVGPRKTLFMDEISTGLDSST
Sbjct: 305 TDYILKVLGLDICSDTIVGNDMLRGVSGGQRKRVTTGEMIVGPRKTLFMDEISTGLDSST 364
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TF IVKC+RNFVHQM+AT LMALLQP PETFELFDDLVLL++G++VY+GPR +VLEFF+S
Sbjct: 365 TFLIVKCIRNFVHQMEATVLMALLQPAPETFELFDDLVLLAEGHVVYEGPREDVLEFFQS 424
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
LGF+LPPRKG+ADFLQEVTSKKDQA+YWAD SKPY F+ V+EIA AF++S+FG+ +ES
Sbjct: 425 LGFQLPPRKGIADFLQEVTSKKDQAQYWADPSKPYQFVSVAEIARAFRNSKFGRYMESLQ 484
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
P+DKS+ H ALA TKYAV+ WE+ + CF RE+LLI RH F Y+FRTCQVAFVGF+TC
Sbjct: 485 THPYDKSECHDLALARTKYAVATWEVVKACFQREVLLIKRHSFLYIFRTCQVAFVGFVTC 544
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+FL+TR HPT+E G LYL+ FFG+VHMMFN FSELP++I+RLPVFYKQRDN F+PAW
Sbjct: 545 TIFLRTRLHPTNEVYGRLYLSALFFGLVHMMFNGFSELPLMITRLPVFYKQRDNLFYPAW 604
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
AWS++SWILRVP SIIEA++W+ +VYY++GFAP AGRFFRYML+LF +HQMALGL+RMMA
Sbjct: 605 AWSLSSWILRVPYSIIEAIIWTVVVYYSVGFAPSAGRFFRYMLILFVMHQMALGLFRMMA 664
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
+IARDMV+ANT+GSAS+L + LLGGFI+PK IK WWIW YWVSPL+YGQ AI+VNEFTA
Sbjct: 665 AIARDMVLANTYGSASLLVVFLLGGFIVPKGMIKPWWIWGYWVSPLTYGQRAITVNEFTA 724
Query: 541 TRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLR 600
+RWMKKS GN+TVGYN+LHS+SLPT DYWYW+G+ V++ YA+ FNN++T+AL YLNP++
Sbjct: 725 SRWMKKSETGNSTVGYNILHSNSLPTGDYWYWIGIAVLIGYAFFFNNMVTVALTYLNPIQ 784
Query: 601 KSQVVIQSDDREENSVKKGVASQGCEL--KTTSSREDGKKKGMIMPFHPLTMTFHNISYY 658
K++ VI SDD ENS + ++Q EL +T S+RED KGMI+PF PLTMTFHN++Y+
Sbjct: 785 KARTVIPSDDDSENSSSRNASNQAYELSTRTRSARED-NNKGMILPFQPLTMTFHNVNYF 843
Query: 659 VDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE 718
VD P+ + +GI E +LQLLS+VSG+FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE
Sbjct: 844 VDMPKELSKQGIPETRLQLLSSVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE 903
Query: 719 GDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVE 778
G+IKISG+PKEQ TFARISGYVEQ D+HSPQVTIEESL FS++LRLPKE+ +RHEFVE
Sbjct: 904 GEIKISGHPKEQRTFARISGYVEQNDIHSPQVTIEESLLFSSSLRLPKEVGTSKRHEFVE 963
Query: 779 EVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838
+VM LVELD+LRHAL+G PGS GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA
Sbjct: 964 QVMKLVELDTLRHALIGMPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1023
Query: 839 IVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYF 898
IVMRAVRNTVDTGRTVVCTIHQPSI+IFEAFDELLLMKRGGRVIYGGKLGVHS+IMIDYF
Sbjct: 1024 IVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKLGVHSRIMIDYF 1083
Query: 899 QGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPD 958
QG+ GIP IPSGYNPATWVLEVTT A EE++G DFA++YKNS+QYR VE S+ PP
Sbjct: 1084 QGIRGIPPIPSGYNPATWVLEVTTPATEERIGEDFADIYKNSDQYRGVEYSVLQFGHPPA 1143
Query: 959 DSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGS 1018
SEPLKF + YSQN +QF CLWKQNLVYWRSP YNA+RL FTT++ALI G++FWD+GS
Sbjct: 1144 GSEPLKFDTIYSQNLFNQFLRCLWKQNLVYWRSPAYNAMRLYFTTISALIFGTIFWDIGS 1203
Query: 1019 QRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQG 1078
+R+S+Q LF+VMGALY++C+FLGVNNA+SVQPIVSIERTVFYREKAAGMYSPI +AAAQG
Sbjct: 1204 KRESTQELFVVMGALYSACMFLGVNNASSVQPIVSIERTVFYREKAAGMYSPIAYAAAQG 1263
Query: 1079 LVEIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQH 1138
L+EIPY+ VQT+LFGVITYFM+NFERT KF LYLVF FLTF+YFTF+GMM VGLTP+QH
Sbjct: 1264 LIEIPYIAVQTVLFGVITYFMINFERTPGKFFLYLVFMFLTFTYFTFYGMMAVGLTPSQH 1323
Query: 1139 LAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVE 1198
LAA+ISSAFYSL NLLSGFL+P+ SIPGWWIWFYYI P+AWTLRGII+SQLGDVET I+
Sbjct: 1324 LAAVISSAFYSLWNLLSGFLIPKSSIPGWWIWFYYICPIAWTLRGIITSQLGDVETKIIG 1383
Query: 1199 PTFRGTVKEYLKESLGY-----GPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQRR 1250
P F GTVKEYL SLG+ G VG S +L+ F + FFG FA SVK LNFQ+R
Sbjct: 1384 PGFEGTVKEYLVVSLGFETKINGFSAVGLSVIVLLGFIILFFGSFAVSVKLLNFQKR 1440
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255569339|ref|XP_002525637.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223535073|gb|EEF36755.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1964 bits (5089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 946/1250 (75%), Positives = 1086/1250 (86%), Gaps = 1/1250 (0%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPPGSGKSTLLLALAGKLD NL ++GSITYNG +LD F V+R SAYI Q DNHIA
Sbjct: 185 MTLLLGPPGSGKSTLLLALAGKLDKNLKRTGSITYNGHKLDHFYVRRTSAYISQIDNHIA 244
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
ELTVRETLDFAA CQGA++ FAAY+KDL RLEKE+ IRP+PEIDAFMKASSV GKKHSVS
Sbjct: 245 ELTVRETLDFAASCQGASEGFAAYMKDLIRLEKEQDIRPSPEIDAFMKASSVAGKKHSVS 304
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDYVL VLGLD+C++TVVGS+MLRGVSGGQ+KRVTTGEMIVGPRKTL MDEISTGLDSST
Sbjct: 305 TDYVLKVLGLDVCAETVVGSDMLRGVSGGQRKRVTTGEMIVGPRKTLLMDEISTGLDSST 364
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
T+QIVKC+ NFVHQMD T LMALLQPPPETF+LFDDLVLLS+GY+VYQGPRAEVLEFFES
Sbjct: 365 TYQIVKCIGNFVHQMDGTVLMALLQPPPETFDLFDDLVLLSEGYMVYQGPRAEVLEFFES 424
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
LGFRLPPRKGVADFLQEVTSKKDQA+YW D KPY ++PV EIA AFKSSR+G+S+ES +
Sbjct: 425 LGFRLPPRKGVADFLQEVTSKKDQAQYWDDHLKPYAYIPVPEIAKAFKSSRWGRSVESMV 484
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
+VPFDK+K PSALA T++AV +WEL + CFARE+LLI RH F Y+FRT QV FVG +T
Sbjct: 485 SVPFDKTKDSPSALAKTEFAVPRWELLKACFAREVLLIRRHWFLYIFRTLQVFFVGCITS 544
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+FL+TR HPTDE G LYL+C FFG+VHMMFN FSEL +LI RLPVF+KQRDN FHP W
Sbjct: 545 TIFLRTRLHPTDEINGNLYLSCLFFGLVHMMFNGFSELSLLIFRLPVFFKQRDNLFHPGW 604
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
AWSI S+ILR+P S +EA VWSC+VYY++ F P RFFR+M LLF++HQMALGL+R MA
Sbjct: 605 AWSIVSFILRIPYSAVEAFVWSCVVYYSVDFTPEISRFFRFMFLLFTVHQMALGLFRTMA 664
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
SIARDMVIANTFGSA++L + LLGGFIIPKESIK WWIW YWVSPL+YGQ A+SVNEF A
Sbjct: 665 SIARDMVIANTFGSAALLVVFLLGGFIIPKESIKPWWIWAYWVSPLTYGQRALSVNEFGA 724
Query: 541 TRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLR 600
RW K S IGNNT+GYNVLH HSLPT D WYW+GVG++ LYA +FN I+TLAL YLNPL+
Sbjct: 725 ERWRKISTIGNNTIGYNVLHGHSLPTSDNWYWIGVGMLWLYALVFNIIVTLALTYLNPLQ 784
Query: 601 KSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYYVD 660
K++ V D EN V G + +G EL SS E ++KGMI+PF PLTMTFHN++Y+VD
Sbjct: 785 KAKTVADPVDSTEN-VSAGNSDEGLELNQISSLESNRRKGMILPFQPLTMTFHNVNYFVD 843
Query: 661 TPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 720
P+ M +G+ EKKLQLLSNVSG+FSPGVLTALVG+SGAGKTTLMDVLAGRKTGGYIEGD
Sbjct: 844 MPKEMSKQGVPEKKLQLLSNVSGVFSPGVLTALVGASGAGKTTLMDVLAGRKTGGYIEGD 903
Query: 721 IKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEV 780
IKISGYPKEQ TF+RISGYVEQ D+HSPQVT+EESLWFS++LRLPK+++K+QRHEFVEEV
Sbjct: 904 IKISGYPKEQGTFSRISGYVEQNDIHSPQVTVEESLWFSSSLRLPKDVTKEQRHEFVEEV 963
Query: 781 MSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
M LVELD+LR ALVG PGS GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV
Sbjct: 964 MRLVELDTLRQALVGFPGSSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1023
Query: 841 MRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQG 900
MR VRNTVDTGRT+VCTIHQPSI+IFEAFDELLLMKRGG+VIYGGKLG HSQIMIDYFQ
Sbjct: 1024 MRTVRNTVDTGRTLVCTIHQPSIDIFEAFDELLLMKRGGQVIYGGKLGGHSQIMIDYFQR 1083
Query: 901 LDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPDDS 960
+ G+P I GYNPATW+LEVTT +EEK+G DFA +Y SEQYREVE+SI S PP S
Sbjct: 1084 IKGVPPISEGYNPATWMLEVTTAFIEEKIGDDFAEIYSKSEQYREVEASIMHFSTPPVGS 1143
Query: 961 EPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQR 1020
EPLKF+STY+Q+ LSQF ICL K+NLVYWRSP+YNAVR+ FT +AA ILGSVFW +GS+R
Sbjct: 1144 EPLKFSSTYAQDLLSQFQICLKKENLVYWRSPRYNAVRIFFTVLAAFILGSVFWKIGSKR 1203
Query: 1021 DSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLV 1080
D++Q LF+VMGALY++C+FLGVNNA+SVQPIVSIERTVFYREKAAGMYSP+ +AAAQGLV
Sbjct: 1204 DTTQDLFVVMGALYSACMFLGVNNASSVQPIVSIERTVFYREKAAGMYSPLAYAAAQGLV 1263
Query: 1081 EIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLA 1140
E+PY+ +QT+L+G+ITYFM+ FE+T KF LYL+F FLTF+YFTF+GMM VGLTP+QH+A
Sbjct: 1264 EVPYIILQTILYGLITYFMIGFEKTAGKFFLYLLFMFLTFTYFTFYGMMAVGLTPSQHMA 1323
Query: 1141 AIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVEPT 1200
A+ISSAFYSL NLLSGFL+P IPGWWIWFYYI P+AWTLRG+ISSQLGDVE +IV P
Sbjct: 1324 AVISSAFYSLWNLLSGFLIPMSKIPGWWIWFYYICPIAWTLRGVISSQLGDVEDIIVGPG 1383
Query: 1201 FRGTVKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQRR 1250
F+GTVKEYLK + G+ M+G S A+L AF FF +FAFS K LNFQRR
Sbjct: 1384 FKGTVKEYLKVNFGFESNMIGVSVAVLFAFCFLFFSVFAFSAKVLNFQRR 1433
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357490693|ref|XP_003615634.1| Pleiotropic drug resistance ABC transporter family protein [Medicago truncatula] gi|355516969|gb|AES98592.1| Pleiotropic drug resistance ABC transporter family protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1958 bits (5072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 951/1308 (72%), Positives = 1098/1308 (83%), Gaps = 60/1308 (4%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPPGSGKS+LL+ALAGKLD NL K+GSITYNG E+DEF V+R SAYI QTDNHI
Sbjct: 182 MTLLLGPPGSGKSSLLMALAGKLDKNLKKTGSITYNGHEIDEFYVRRTSAYISQTDNHIP 241
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
ELTVRETLDF ARCQGA + FA Y KDL LE ER+IRP+PEIDAFMKASSVGGKKHSV+
Sbjct: 242 ELTVRETLDFGARCQGAEEGFAEYTKDLGHLENERNIRPSPEIDAFMKASSVGGKKHSVN 301
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY+L VLGLD+CSDT+VG+EM RGVSGGQ+KRVTTGEMIVGPRKTLFMDEISTGLDSST
Sbjct: 302 TDYILKVLGLDVCSDTIVGNEMTRGVSGGQRKRVTTGEMIVGPRKTLFMDEISTGLDSST 361
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
T+QIVKC++NFVHQM+AT LMALLQP PETFELFDDLVLLS+G+++Y+GPR +VLEFFES
Sbjct: 362 TYQIVKCIKNFVHQMEATVLMALLQPAPETFELFDDLVLLSEGHVIYEGPREDVLEFFES 421
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
+GF+LPPRKG+ADFLQEVTSKKDQA+YWAD SKPY F+ V EIA AF+SSRFG+ ++S
Sbjct: 422 IGFQLPPRKGIADFLQEVTSKKDQAQYWADPSKPYEFISVREIAEAFRSSRFGRYMDSLQ 481
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
A P+DKSK HPSALA KYAVSK E+ + CF RE+LLI RH F Y+FRT QVAFVGF+TC
Sbjct: 482 AHPYDKSKCHPSALAQKKYAVSKLEVTKACFNREVLLIKRHSFLYIFRTFQVAFVGFVTC 541
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+FL+TR HPTDE G+LYL+ FFG+VHMMFN FSELP++ISRLPVFYKQRDN F+PAW
Sbjct: 542 TVFLRTRLHPTDESYGSLYLSALFFGLVHMMFNGFSELPLMISRLPVFYKQRDNLFYPAW 601
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAG------------------------ 456
AWS SWILRVP S+IEA++W+ +VYY++GFAP AG
Sbjct: 602 AWSFTSWILRVPYSVIEALIWAAVVYYSVGFAPAAGRYLYFIAFFCSKYSFIPSMSLLFV 661
Query: 457 ---RFFRYMLLLFSIHQMALGLYRMMASIARDMVIANTFGSASMLAILLLGGFIIPKESI 513
RFFRY+ +LF +HQMALGL+ MMASIARDMV+ANTFGSA++L I LLGGFI+PK I
Sbjct: 662 KCFRFFRYIFILFVVHQMALGLFGMMASIARDMVLANTFGSAALLIIFLLGGFIVPKGMI 721
Query: 514 KSWWIWMYWVSPLSYGQSAISVNEFTATRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWL 573
K WWIW YW+SPL+YGQ AI++NEFTA+RWMKKSAIGNNTVGYN+L S++LP DDYWYW
Sbjct: 722 KPWWIWGYWLSPLTYGQRAITINEFTASRWMKKSAIGNNTVGYNILVSNNLPVDDYWYWA 781
Query: 574 GVGVMLLYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKGVASQGCELKTT--S 631
G G+++LYA FN+++TLALAYLNPL+K++ +I DD + S K V++Q E+ T S
Sbjct: 782 GAGILILYAIFFNSMVTLALAYLNPLQKARTIIPLDD--DGSDKNSVSNQVSEMSTNSRS 839
Query: 632 SREDGKKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLT 691
R +G KGMI+PF PLTMTFHN++YYVD P+ +R++GI E KLQLLS+VSG+FSPGVLT
Sbjct: 840 RRGNGNTKGMILPFQPLTMTFHNVNYYVDMPKEIRNQGIAETKLQLLSDVSGVFSPGVLT 899
Query: 692 ALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVT 751
ALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ TFARISGYVEQ D+HSPQVT
Sbjct: 900 ALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQQTFARISGYVEQNDIHSPQVT 959
Query: 752 IEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLT 811
IEESLWFSA+LRLPKEIS D+R EFVE+VM LVELDSLR+ALVG PGS GLSTEQRKRLT
Sbjct: 960 IEESLWFSASLRLPKEISIDKRREFVEQVMKLVELDSLRYALVGMPGSSGLSTEQRKRLT 1019
Query: 812 IAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDE 871
IAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSI+IFEAFDE
Sbjct: 1020 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1079
Query: 872 LLLMKRGGRVIYGGKLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGV 931
LLLMKRGGRVIYGGK+GVHSQ +IDYFQG+ G+P IPSGYNPATWVLEVTT AVEE++G
Sbjct: 1080 LLLMKRGGRVIYGGKIGVHSQTLIDYFQGITGVPPIPSGYNPATWVLEVTTPAVEERIGS 1139
Query: 932 DFANVYKNSEQYREVESSIKSLSVPPDDSEPLKFASTYSQNWLSQFFICLWKQNLVYWRS 991
DFA +YKNS Q+R VE+SI PP +PLKF + YSQN LSQF++CLWKQNLVYWRS
Sbjct: 1140 DFAEIYKNSAQFRGVEASILEFEHPPAGFQPLKFDTIYSQNPLSQFYLCLWKQNLVYWRS 1199
Query: 992 PQYNAVRLAFTTVAALILGSVFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPI 1051
P YNA+R+ FTT++ALI GSVFWD+GS+R S+Q LF++MGALY++CLFLGVNNA+SVQPI
Sbjct: 1200 PSYNAMRMYFTTISALIFGSVFWDIGSKRSSTQELFVLMGALYSACLFLGVNNASSVQPI 1259
Query: 1052 VSIERTVFYREKAAGMYSPIPFAAAQ----------------GLVEIPYVFVQTLLFGVI 1095
VSIERTVFYREKAAGMY+P+ + AAQ GLVEIPY+ VQT++FG+I
Sbjct: 1260 VSIERTVFYREKAAGMYTPLAYGAAQVGLTTVEIISPTYLYHGLVEIPYIAVQTIVFGLI 1319
Query: 1096 TYFMVNFERT--------MRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLAAIISSAF 1147
TYFMVNFE+T + KFLLYL+F FLTF+YFTF+GMM VGLTP+Q AA+ISSAF
Sbjct: 1320 TYFMVNFEKTAGNTSTSHIWKFLLYLLFMFLTFTYFTFYGMMAVGLTPSQQFAAVISSAF 1379
Query: 1148 YSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVEPTFRGTVKE 1207
YSL NLLSGFL+P+ IPGWWIWFYYI PV WTLRGII+SQLGDVET IV P F GTVKE
Sbjct: 1380 YSLWNLLSGFLIPKSHIPGWWIWFYYICPVQWTLRGIITSQLGDVETRIVGPGFEGTVKE 1439
Query: 1208 YLKESLGY-----GPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQRR 1250
YL +LGY G VG S +L+AF + FFG FA SVK LNFQ+R
Sbjct: 1440 YLSVTLGYDQKINGISSVGLSVIVLIAFILVFFGSFAASVKLLNFQKR 1487
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450812|ref|XP_004143156.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 31-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1956 bits (5068), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 945/1307 (72%), Positives = 1099/1307 (84%), Gaps = 64/1307 (4%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPPGSG+STLL ALAGKLD NL K+G+ITYNG L EF VQR SAYI Q+DNH+A
Sbjct: 187 MTLLLGPPGSGRSTLLQALAGKLDRNLKKTGNITYNGHHLKEFCVQRTSAYISQSDNHLA 246
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
ELTVRETLDFAARCQGA+++F+ YIK+LT +EKE+ IRP+P+IDAFMKASSVGGKKHSV
Sbjct: 247 ELTVRETLDFAARCQGASEAFSEYIKELTHVEKEKRIRPSPDIDAFMKASSVGGKKHSVL 306
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY+L VLGLD+CS+T+VGS+M+RGVSGGQ+KRVT+GEMIVGPRKTLFMDEISTGLDSST
Sbjct: 307 TDYILKVLGLDVCSETLVGSDMVRGVSGGQRKRVTSGEMIVGPRKTLFMDEISTGLDSST 366
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQIVKC+RNFVHQM+AT LMALLQP PETFELFDDLVLLSDGYLVYQGPR+EVL FFES
Sbjct: 367 TFQIVKCLRNFVHQMEATVLMALLQPAPETFELFDDLVLLSDGYLVYQGPRSEVLAFFES 426
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
LGF+LPPRKGVADFLQEVTSKKDQ +YWAD+++ Y ++ V EIA AFK S+ G+SLES L
Sbjct: 427 LGFKLPPRKGVADFLQEVTSKKDQEQYWADSTRAYKYISVPEIAEAFKQSQVGRSLESDL 486
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
P+DKS SHPSALA TK+A SK ELF+ CF RE+LLI RH F Y+FRTCQVAFVGF+TC
Sbjct: 487 NPPYDKSSSHPSALAKTKFAASKNELFKACFFRELLLIKRHSFLYIFRTCQVAFVGFVTC 546
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
TMFL+TR HPTDE G LYL+C FFG++HMMFN FSELP++ISRLPVFYKQRDN FHP+W
Sbjct: 547 TMFLRTRIHPTDEINGNLYLSCLFFGLIHMMFNGFSELPLMISRLPVFYKQRDNLFHPSW 606
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLF-------------- 466
+WSI+SWILRVP S++EAVVWSC+VYYT+GFAP AGR+ ++ L
Sbjct: 607 SWSISSWILRVPYSVLEAVVWSCVVYYTVGFAPSAGRYLIFICLFLHCFEMXLFSRASNI 666
Query: 467 ---------------SIHQMALGLYRMMASIARDMVIANTFGSASMLAILLLGGFIIPKE 511
S+HQMA+GL+R+MA+IARDMVIANTFGSA++L I LLGGFIIPKE
Sbjct: 667 FKMIFRFFRFMFLLFSVHQMAIGLFRLMAAIARDMVIANTFGSAALLIIFLLGGFIIPKE 726
Query: 512 SIKSWWIWMYWVSPLSYGQSAISVNEFTATRWMKKSAIGNNTVGYNVLHSHSLPTDDYWY 571
IK WW W +WVSPLSYGQ AISVNEFTATRWM+KS+IGN T+GYNVLHSH++P+ D WY
Sbjct: 727 MIKPWWSWAFWVSPLSYGQRAISVNEFTATRWMEKSSIGNGTIGYNVLHSHNMPSSDKWY 786
Query: 572 WLGVGVMLLYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKGVASQGCELKTTS 631
WLGVGV+L+YA LFN+++TLAL+ L+PLRK+Q VI +D +S + E S
Sbjct: 787 WLGVGVILIYAILFNSLVTLALSKLHPLRKAQTVIPTDANGTDS-----TTNNQEQVPNS 841
Query: 632 SREDGKKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLT 691
+ G KGMI+PF PLTMTFHN++Y+VDTP+ M+ +GI E +LQLLSNVSG+FSPGVLT
Sbjct: 842 NGRVG--KGMILPFQPLTMTFHNVNYFVDTPKEMKQQGIPENRLQLLSNVSGVFSPGVLT 899
Query: 692 ALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVT 751
ALVGSSGAGKTTLMDVLAGRKTGGYIEG+IKISG+PKEQ TFARISGYVEQ D+HSPQVT
Sbjct: 900 ALVGSSGAGKTTLMDVLAGRKTGGYIEGEIKISGFPKEQRTFARISGYVEQNDIHSPQVT 959
Query: 752 IEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLT 811
+EESL FS++LRLPKEIS+++R EFVEEVM+LVELD+LRHALVG PGS GLSTEQRKRLT
Sbjct: 960 VEESLQFSSSLRLPKEISEEKRREFVEEVMTLVELDTLRHALVGMPGSTGLSTEQRKRLT 1019
Query: 812 IAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDE 871
IAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSI+IFEAFDE
Sbjct: 1020 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1079
Query: 872 LLLMKRGGRVIYGGKLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGV 931
LLLMKRGGRVIYGGKLGVHSQIMIDYF+G++G+ IP YNPATW+LEVTT A E+++G
Sbjct: 1080 LLLMKRGGRVIYGGKLGVHSQIMIDYFEGINGVSPIPDAYNPATWMLEVTTPAAEQRIGR 1139
Query: 932 DFANVYKNSEQYREVESSIKSLSVPPDDSEPLKFASTYSQNWLSQFFICLWKQNLVYWRS 991
DFA++Y+NS Q+R+VE SIK SVPP E LKF STYSQ LSQF ICLWKQ LVYWRS
Sbjct: 1140 DFADIYRNSGQFRDVEESIKQYSVPPSGGEALKFDSTYSQGTLSQFIICLWKQRLVYWRS 1199
Query: 992 PQYNAVRLAFTTVAALILGSVFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPI 1051
PQYN +RL FT ++ALI GSVFWDVG +R+S+Q L +VMGALY++CLFLGVNNA+SVQPI
Sbjct: 1200 PQYNVMRLCFTFISALIFGSVFWDVGMRRNSTQELMVVMGALYSACLFLGVNNASSVQPI 1259
Query: 1052 VSIERTVFYREKAAGMYSPIPFAAA--------------------QGLVEIPYVFVQTLL 1091
VSIERTVFYREKAAGMYSPI +A A QGLVE+PY+ QT++
Sbjct: 1260 VSIERTVFYREKAAGMYSPIAYAFAQVRKLTVKYXSNFXFVVYSQQGLVEVPYIAAQTII 1319
Query: 1092 FGVITYFMVNFERT-------MRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLAAIIS 1144
FGVITY MVNFER + KF LY++F FLTF+YFTF+GMM VGLTP+QH+AA++S
Sbjct: 1320 FGVITYLMVNFERNVGNTSEHLGKFFLYILFMFLTFTYFTFYGMMTVGLTPSQHMAAVVS 1379
Query: 1145 SAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVEPTFRGT 1204
SAFYSL NLLSGFLVP+PSIPGWWIWFYYI P++WTLRGII+SQLGDVET+IV P F+G+
Sbjct: 1380 SAFYSLWNLLSGFLVPKPSIPGWWIWFYYICPISWTLRGIITSQLGDVETIIVGPGFKGS 1439
Query: 1205 VKEYLKESLGYGPG-MVGASAAMLVAFSVFFFGIFAFSVKFLNFQRR 1250
VK+YL+ SLGYG M+G S +LVAF + FF +FA SVK +NFQRR
Sbjct: 1440 VKQYLEVSLGYGGNDMIGVSVVVLVAFILLFFTVFAVSVKLINFQRR 1486
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434598|ref|XP_002279155.1| PREDICTED: ABC transporter G family member 31-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1949 bits (5048), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 937/1250 (74%), Positives = 1094/1250 (87%), Gaps = 14/1250 (1%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPPG+GKSTLLLAL+GKL GNL KSG ITYNG +EF +QR SAY QTDNHIA
Sbjct: 180 MTLLLGPPGAGKSTLLLALSGKLAGNLKKSGRITYNGHTFNEFCIQRTSAYTSQTDNHIA 239
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
ELTVRETLDFAARCQGAN+ FA Y+ DL RLEKER IRP+PEIDAFMKAS+ GG+ HS+S
Sbjct: 240 ELTVRETLDFAARCQGANEGFAGYMTDLARLEKERDIRPSPEIDAFMKASAFGGRTHSIS 299
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDYVL VLGLD+CS+T+VG++MLRGVSGGQK+RVTTGEMIVGPRKTLFMDEISTGLDSST
Sbjct: 300 TDYVLKVLGLDVCSETIVGNDMLRGVSGGQKRRVTTGEMIVGPRKTLFMDEISTGLDSST 359
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQIVKC+ NFVHQMD+T LMALLQP PETF+LFDDL+LLS+G++VYQGPRAEVLEFFES
Sbjct: 360 TFQIVKCIGNFVHQMDSTVLMALLQPAPETFDLFDDLLLLSEGHIVYQGPRAEVLEFFES 419
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
LGFRLPPRKGVADFLQEVTSKKDQ +YW+D S+PYV+LPV +IA AFK+SRFG S++S+L
Sbjct: 420 LGFRLPPRKGVADFLQEVTSKKDQEQYWSDPSRPYVYLPVPKIAEAFKASRFGSSMQSAL 479
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
+ PF+K SHP+AL+ T++A SK ELFR CFARE+LL+SRHRF Y+FRTCQVAFVG +TC
Sbjct: 480 STPFNKFDSHPAALSKTRFATSKSELFRACFARELLLLSRHRFLYIFRTCQVAFVGLITC 539
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
TM+L+TR HP +E G LYL+C FFG+VHMMFN FSELPI+I+RLP+FYKQRDNYFHPAW
Sbjct: 540 TMYLRTRIHPRNEADGELYLSCLFFGLVHMMFNGFSELPIMIARLPIFYKQRDNYFHPAW 599
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
AWS+ASWILR+P S+IE+V+WSC+VYY +GFAP AGRFFR++ +LFS HQMALGL+R+MA
Sbjct: 600 AWSVASWILRLPYSVIESVIWSCVVYYPVGFAPSAGRFFRFLFVLFSTHQMALGLFRVMA 659
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
+ ARDM++ANT S ++L +LLLGGF+IPK IK WW+W +W+SPLSYGQ ISVNEFTA
Sbjct: 660 ASARDMIVANTVCSFALLVVLLLGGFLIPKALIKKWWVWAFWLSPLSYGQRGISVNEFTA 719
Query: 541 TRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLR 600
TRWMK+S + N+T+G+NVL +H LPT DYWYWLGV V+L Y+ LFN ++TLALAYLNPL
Sbjct: 720 TRWMKRSVLSNDTIGHNVLQAHKLPTHDYWYWLGVCVLLAYSVLFNYLLTLALAYLNPLT 779
Query: 601 KSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYYVD 660
+Q V+++DD + K ++ E KKKGM +PF PLTMTFHN++Y+VD
Sbjct: 780 SAQAVLRTDDEDG--------------KPKAAEEGSKKKGMSLPFQPLTMTFHNVNYFVD 825
Query: 661 TPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 720
P+ M +KGI EK+LQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD
Sbjct: 826 MPKEMTAKGIPEKRLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 885
Query: 721 IKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEV 780
I ISGYPKEQ TFAR+SGYVEQ D+HSPQVT+EESLWFSA LRLPKE+SK+Q+ EFV++V
Sbjct: 886 IMISGYPKEQRTFARVSGYVEQNDIHSPQVTVEESLWFSAVLRLPKEVSKEQKLEFVDQV 945
Query: 781 MSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
M+L+ELD LRHALVG PGS GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV
Sbjct: 946 MNLIELDVLRHALVGMPGSTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1005
Query: 841 MRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQG 900
MR VRNTVDTGRTVVCTIHQPSI+IFEAFD LLLMKRGGRVIYGGKLG SQ +IDYFQG
Sbjct: 1006 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDALLLMKRGGRVIYGGKLGNQSQNLIDYFQG 1065
Query: 901 LDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPDDS 960
+ GIP IP GYNPATW+LE+TT A EE++G DFA++Y+NSE +REVE++IKS SVPP S
Sbjct: 1066 ISGIPPIPDGYNPATWMLEITTPAAEERIGEDFADLYRNSENFREVEAAIKSFSVPPPGS 1125
Query: 961 EPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQR 1020
EPL F + YSQ+ ++QF CLWKQNLVYWRSP+YNAV++ F+T++ALI GSVFWDVGS+R
Sbjct: 1126 EPLHFPTMYSQDAMTQFRTCLWKQNLVYWRSPEYNAVKILFSTISALIFGSVFWDVGSKR 1185
Query: 1021 DSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLV 1080
DS+QSL MVMGALYASCLF+GVNN+ASVQPIVS+ERTVFYRE+AAGMYSP P+AAAQGLV
Sbjct: 1186 DSTQSLVMVMGALYASCLFVGVNNSASVQPIVSVERTVFYRERAAGMYSPFPYAAAQGLV 1245
Query: 1081 EIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLA 1140
EIPY +QT++FGVIT+FM+NFERT RKF LYLVF FLTFSYFTF+GMM VGLTPNQ LA
Sbjct: 1246 EIPYTILQTIVFGVITFFMINFERTARKFFLYLVFMFLTFSYFTFYGMMAVGLTPNQQLA 1305
Query: 1141 AIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVEPT 1200
A++SSAFYSL NLLSGFL+P+P IPGWWIWFYYI PVAWTLRGIISSQLGDV + + P
Sbjct: 1306 AVVSSAFYSLWNLLSGFLIPKPRIPGWWIWFYYICPVAWTLRGIISSQLGDVTEITIGPG 1365
Query: 1201 FRGTVKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQRR 1250
F+G V +YL + LG+GPGM+G SA +L+ FSV FF +FA SVK LNFQ+R
Sbjct: 1366 FKGAVNKYLNDKLGFGPGMIGVSAVVLICFSVLFFSVFAISVKVLNFQKR 1415
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356566112|ref|XP_003551279.1| PREDICTED: ABC transporter G family member 31-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1870 bits (4845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 890/1255 (70%), Positives = 1063/1255 (84%), Gaps = 14/1255 (1%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPPGSGK+TLLLALAGKL+ NL KSGSITYNG E +EF +QRASAY QTDNHIA
Sbjct: 176 MTLLLGPPGSGKTTLLLALAGKLESNLKKSGSITYNGHEQNEFCIQRASAYTSQTDNHIA 235
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
ELTVR+T DFA RCQG++D +K+L RLEKE++I P+PEIDAFMKA+ VGGKKH+V
Sbjct: 236 ELTVRQTFDFANRCQGSSD--VEIVKNLERLEKEKNILPSPEIDAFMKATLVGGKKHNVM 293
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDYVL VLGLD+CSDTVVG++MLRGVSGGQK+RVTTGEMIVGPRK LFMDEISTGLDSST
Sbjct: 294 TDYVLKVLGLDVCSDTVVGNDMLRGVSGGQKRRVTTGEMIVGPRKALFMDEISTGLDSST 353
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQIVKC+RNFVHQMDAT LMALLQP PETFELFDDL+LLS+GY+VYQGP + LEFFES
Sbjct: 354 TFQIVKCIRNFVHQMDATVLMALLQPAPETFELFDDLLLLSEGYVVYQGPIKDALEFFES 413
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
LGF+LP RKGVADFLQEVTSKKDQA+YWAD+SKPY F+ V EIA AFK+SRFGKS+ES
Sbjct: 414 LGFKLPSRKGVADFLQEVTSKKDQAQYWADSSKPYKFISVPEIAEAFKNSRFGKSVESMC 473
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
PFDKSKSHPSAL TT++AV KWELF+ CF+RE+ L++ HRF Y+FRTCQV FVG +TC
Sbjct: 474 TAPFDKSKSHPSALPTTRFAVPKWELFKACFSRELTLLNGHRFLYIFRTCQVTFVGIVTC 533
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
TMF++T+ H DE+ G LY + FFG+VHMMFN +SEL ++I+RLPVF+KQR N F+P W
Sbjct: 534 TMFIQTKFHNKDEEYGNLYQSALFFGLVHMMFNGYSELTLMIARLPVFFKQRGNLFYPGW 593
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
AWS+A+WIL VP S++EAV+WSC+VYYT+GFAP GRFFRYMLLLF +HQMALGL+R MA
Sbjct: 594 AWSLATWILGVPYSLVEAVIWSCVVYYTVGFAPAPGRFFRYMLLLFMLHQMALGLFRFMA 653
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
++ARDMVIANTFG+A+++ I LLGGFIIPK IK WWIW YW+SPL+YGQ AISVNEFTA
Sbjct: 654 ALARDMVIANTFGTAALMIIFLLGGFIIPKGMIKPWWIWGYWLSPLTYGQRAISVNEFTA 713
Query: 541 TRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLR 600
TRWM+ SA G+NTVG N+L +P +DYWYW+G+GV+ LYA +FN ++TL L+YLNPL+
Sbjct: 714 TRWMQHSAFGSNTVGLNILKGFDIPAEDYWYWVGLGVLTLYALIFNCLVTLGLSYLNPLQ 773
Query: 601 KSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYYVD 660
K++ ++ D+ + + + SS +DGK KGM +PF P+TMTFH ++YYVD
Sbjct: 774 KARAILLGDEDDSKESSN-------KNGSKSSGDDGKAKGMSLPFEPMTMTFHGVNYYVD 826
Query: 661 TPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 720
P+ + ++GI E +L+LLSNVSG+F+PGVLTAL+GSSGAGKTTLMDVLAGRKTGGYIEG+
Sbjct: 827 MPKEIANQGIAETRLKLLSNVSGVFAPGVLTALMGSSGAGKTTLMDVLAGRKTGGYIEGE 886
Query: 721 IKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEV 780
IKISGYPK Q TFARISGYVEQ D+HSPQ+T+EESLWFSA+LRLPKE+S +++HEFVE+V
Sbjct: 887 IKISGYPKVQQTFARISGYVEQNDIHSPQLTVEESLWFSASLRLPKEVSMEKKHEFVEQV 946
Query: 781 MSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
M LVELDSLR LVG PG+ GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV
Sbjct: 947 MKLVELDSLRKGLVGMPGTSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1006
Query: 841 MRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQG 900
MRAVRNTVDTGRTVVCTIHQPSI+IFEAFDELLLMKRGGRVIYGGK+G S IMI YFQ
Sbjct: 1007 MRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGRVIYGGKIGRQSDIMIKYFQS 1066
Query: 901 LDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPDDS 960
+ G IPSGYNPATW+LEVTT AVEEKLGVDF+ +Y++SEQ+R V +SIK PP S
Sbjct: 1067 IKGTSSIPSGYNPATWMLEVTTPAVEEKLGVDFSEIYESSEQFRGVLASIKKHGQPPPGS 1126
Query: 961 EPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQR 1020
+PLKF + YSQN +QF CLWKQNLVYWRSP YNA+R+ FT + A I G++FWD+G++R
Sbjct: 1127 KPLKFDTIYSQNTWAQFLKCLWKQNLVYWRSPPYNAMRIFFTIICAFIFGTIFWDIGTKR 1186
Query: 1021 DSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLV 1080
++ ++++MGAL+++CLFLGVNNA+SVQP+VSIERTVFYREKAAGMYSPI +A AQGLV
Sbjct: 1187 QTTHQVYVIMGALFSACLFLGVNNASSVQPVVSIERTVFYREKAAGMYSPISYAIAQGLV 1246
Query: 1081 EIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLA 1140
EIPYV +QT++FGVITYFMVNFER + KF LYLVF FLTF YFTF+GMM VG+TP QH A
Sbjct: 1247 EIPYVALQTIVFGVITYFMVNFERDVGKFFLYLVFMFLTFMYFTFYGMMAVGITPTQHFA 1306
Query: 1141 AIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVEPT 1200
A+ISSAFYSL NL+SGFL+P+ IP WW+WF+Y+ PV+WTLRGII+SQLGDVE M+V P
Sbjct: 1307 AVISSAFYSLWNLVSGFLIPKSHIPVWWMWFHYLCPVSWTLRGIITSQLGDVEEMLVGPG 1366
Query: 1201 FRGTVKEYLKESLGYGPGMVGASAAM-----LVAFSVFFFGIFAFSVKFLNFQRR 1250
F+G VKE++ +L Y + G S+ + L+ F+V FFG FA S+K LNFQ+R
Sbjct: 1367 FKGNVKEFIAATLEYDTKINGMSSVLLSVIVLICFNVLFFGSFAVSIKVLNFQKR 1421
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1250 | ||||||
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.991 | 0.868 | 0.724 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.991 | 0.875 | 0.544 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.992 | 0.859 | 0.542 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.993 | 0.872 | 0.538 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.996 | 0.856 | 0.519 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.997 | 0.878 | 0.513 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.996 | 0.856 | 0.520 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.997 | 0.86 | 0.488 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.996 | 0.881 | 0.480 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.507 | 0.431 | 0.530 | 0.0 |
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4823 (1702.8 bits), Expect = 0., P = 0.
Identities = 905/1250 (72%), Positives = 1054/1250 (84%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPPGSGKSTLLLALAGKLD +L K+G+ITYNG L++F V+R SAYI QTDNHIA
Sbjct: 188 MTLLLGPPGSGKSTLLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIA 247
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
ELTVRETLDFAARCQGA++ FA Y+KDLTRLEKER IRP+ EIDAFMKA+SV G+KHSVS
Sbjct: 248 ELTVRETLDFAARCQGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVS 307
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDYVL VLGLD+CSDT+VG++M+RGVSGGQ+KRVTTGEM VGPRKTLFMDEISTGLDSST
Sbjct: 308 TDYVLKVLGLDVCSDTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSST 367
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQIVKC+RNFVH MDAT LMALLQP PETF+LFDDL+LLS+GY+VYQGPR +V+ FFES
Sbjct: 368 TFQIVKCIRNFVHLMDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFES 427
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
LGFRLPPRKGVADFLQEVTSKKDQA+YWAD SKPY F+PVS+IA AF++S++G + +S L
Sbjct: 428 LGFRLPPRKGVADFLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKL 487
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
A PFDK + PSAL TK+A+S WE + CF RE+LLI RH+F Y FRTCQV FVG +T
Sbjct: 488 AAPFDKKSADPSALCRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTA 547
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+FLKTR HPT E+ G YL+C FFG+VHMMFN FSELP++ISRLPVFYKQRDN FHPAW
Sbjct: 548 TVFLKTRLHPTSEQFGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAW 607
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
+WSIASW+LRVP S++EAVVWS +VY+T+G AP AGRFFRYMLLLFS+HQMALGL+RMMA
Sbjct: 608 SWSIASWLLRVPYSVLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMA 667
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
S+ARDMVIANTFGSA++L + LLGGF+IPK IK WW+W +WVSPLSYGQ AI+VNEFTA
Sbjct: 668 SLARDMVIANTFGSAAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTA 727
Query: 541 TRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLR 600
TRWM SAI + T+G N+L S PT+DYWYW+G+ V++ YA LFNN++TLALAYLNPLR
Sbjct: 728 TRWMTPSAISDTTIGLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLR 787
Query: 601 KSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYYVD 660
K++ V+ D EE ++ VA +++ +KKGMI+PF PLTMTFHN++YYVD
Sbjct: 788 KARAVVLDDPNEETAL---VAD--------ANQVISEKKGMILPFKPLTMTFHNVNYYVD 836
Query: 661 TPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 720
P+ MRS+G+ E +LQLLSNVSG+FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY EGD
Sbjct: 837 MPKEMRSQGVPETRLQLLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYTEGD 896
Query: 721 IKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEV 780
I+ISG+PKEQ TFARISGYVEQ D+HSPQVT+EESLWFSA+LRLPKEI+K+Q+ EFVE+V
Sbjct: 897 IRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESLWFSASLRLPKEITKEQKKEFVEQV 956
Query: 781 MSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXX 840
M LVELD+LR+ALVG PG+ GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD
Sbjct: 957 MRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1016
Query: 841 XXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQG 900
NTVDTGRTVVCTIHQPSI+IFEAFDELLLMKRGG+VIYGGKLG HSQ+++DYFQG
Sbjct: 1017 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYGGKLGTHSQVLVDYFQG 1076
Query: 901 LDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPDDS 960
++G+P I SGYNPATW+LEVTT A+EEK ++FA++YK S+Q+REVE++IK LSVPP+ S
Sbjct: 1077 INGVPPISSGYNPATWMLEVTTPALEEKYNMEFADLYKKSDQFREVEANIKQLSVPPEGS 1136
Query: 961 EPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQR 1020
EP+ F S YSQN LSQF +CLWKQNLVYWRSP+YN VRL FTT+AA ILG+VFWD+GS+R
Sbjct: 1137 EPISFTSRYSQNQLSQFLLCLWKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWDIGSKR 1196
Query: 1021 DSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLV 1080
SSQ L VMGALY++CLFLGV+NA+SVQPIVSIERTVFYREKAAGMY+PIP+AAAQGLV
Sbjct: 1197 TSSQDLITVMGALYSACLFLGVSNASSVQPIVSIERTVFYREKAAGMYAPIPYAAAQGLV 1256
Query: 1081 EIPYVFVQTLLFGVITYFMVNFERTMRKXXXXXXXXXXXXXXXXXXGMMVVGLTPNQHLA 1140
EIPY+ QT+L+GVITYF + FERT K GMM VGLTPNQHLA
Sbjct: 1257 EIPYILTQTILYGVITYFTIGFERTFSKFVLYLVFMFLTFTYFTFYGMMAVGLTPNQHLA 1316
Query: 1141 AIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVEPT 1200
A+ISSAFYSL NLLSGFLV +P IP WWIWFYYI PVAWTL+G+I SQLGDVE+MI EP
Sbjct: 1317 AVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMINEPL 1376
Query: 1201 FRGTVKEYLKESLGYGPGMVGASAAMLXXXXXXXXXXXXXXXXXLNFQRR 1250
F GTVKE+++ GY P M+G SAA+L LNFQRR
Sbjct: 1377 FHGTVKEFIEYYFGYKPNMIGVSAAVLVGFCALFFSAFALSVKYLNFQRR 1426
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3599 (1272.0 bits), Expect = 0., P = 0.
Identities = 682/1253 (54%), Positives = 895/1253 (71%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPP SGK+TLLLALAGKLD +L +G +TYNG L+EF Q+ SAYI Q D H+
Sbjct: 175 MTLLLGPPSSGKTTLLLALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVG 234
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
+TV+ETLDF+ARCQG + + +L R EK+ I P PE+D FMK+ + G K S+
Sbjct: 235 VMTVQETLDFSARCQGVGTRYDL-LSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLI 293
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY L +LGLD+C DTVVG EM+RG+SGGQKKRVTTGEMIVGP KTLFMDEISTGLDSST
Sbjct: 294 TDYTLRILGLDICKDTVVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 353
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
T+QIVKC++ V DAT LM+LLQP PETFELFDD++LLS+G +VYQGPR VL FFE+
Sbjct: 354 TYQIVKCLQEIVRFTDATVLMSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFET 413
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
GF+ P RKG ADFLQEVTS+KDQ +YWAD+ KPY ++ VSE + F++ G +LE L
Sbjct: 414 CGFKCPDRKGTADFLQEVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDL 473
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
+VP+D+ KSHP++L K++V K +LF+ C+ RE+LL+ R+ FFY+ +T Q+ + +
Sbjct: 474 SVPYDRFKSHPASLVFKKHSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIAS 533
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T++L+T +E GA+Y+ F M+ MFN F+EL ++I RLPVFYKQRD FHP W
Sbjct: 534 TVYLRTEMGTKNESDGAVYIGALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPW 593
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
+S+ +++L +P+SI E+VVW I YY +GFAP RF +++L++F QMA G++R +A
Sbjct: 594 TFSLPTFLLGIPISIFESVVWVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIA 653
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
+ R M++ANT G+ +L + LLGGFI+P+ I WW W YWVSP++Y A++VNE A
Sbjct: 654 ATCRSMILANTGGALVILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLA 713
Query: 541 TRWMKKSAIGNNT-VGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPL 599
RW+ + + N+T +G VL + TD WYW+GVG +L + LFN ++TLAL +LNPL
Sbjct: 714 PRWINQPSSDNSTSLGLAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPL 773
Query: 600 RKSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYYV 659
K Q V+ ++ EEN + G S+ ++K +GM++PF PLTM+F N++YYV
Sbjct: 774 EKQQAVVSKENTEENRAENGSKSKSIDVK----------RGMVLPFTPLTMSFDNVNYYV 823
Query: 660 DTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEG 719
D P+ M+ +G+ + KLQLL V+G+F PGVLTAL+G SGAGKTTLMDVLAGRKTGGYIEG
Sbjct: 824 DMPKEMKEQGVSKDKLQLLKEVTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG 883
Query: 720 DIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEE 779
DI+ISG+PK Q TFARISGY EQ D+HSPQVT++ESL +SA LRLPKE++K ++ FV+E
Sbjct: 884 DIRISGFPKRQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFVDE 943
Query: 780 VMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXX 839
VM LVEL+SL+ A+VG PG GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD
Sbjct: 944 VMELVELESLKDAVVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1003
Query: 840 XXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQ 899
NTVDTGRTVVCTIHQPSI+IFEAFDELLL+KRGG+VIY G LG +S +I+YFQ
Sbjct: 1004 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYAGPLGQNSHKIIEYFQ 1063
Query: 900 GLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPDD 959
+ G+P I YNPATW+LEV++ A E KL +DFA YK S Y++ ++ +K LS PP
Sbjct: 1064 AIHGVPKIKEKYNPATWMLEVSSMAAEAKLEIDFAEHYKTSSLYQQNKNLVKELSTPPQG 1123
Query: 960 SEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQ 1019
+ L F++ +SQ+ L QF CLWKQ + YWR+P YN R FT AA++LGS+FW VG++
Sbjct: 1124 ASDLYFSTRFSQSLLGQFKSCLWKQWITYWRTPDYNLARFFFTLAAAVMLGSIFWKVGTK 1183
Query: 1020 RDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGL 1079
R+++ L V+GA+YA+ LF+GVNN++SVQP++++ER+VFYRE+AA MYS +P+A AQ +
Sbjct: 1184 RENANDLTKVIGAMYAAVLFVGVNNSSSVQPLIAVERSVFYRERAAEMYSALPYALAQVV 1243
Query: 1080 VEIPYVFVQTLLFGVITYFMVNFERTMRKXXXXXXXXXXXXXXXXXXGMMVVGLTPNQHL 1139
EIPYV +QT + +I Y M+ FE T+ K GMM V LTPNQ +
Sbjct: 1244 CEIPYVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSFMSFLYFTYYGMMTVALTPNQQV 1303
Query: 1140 AAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVEP 1199
AA+ + AFY L NL SGF++P+P IP WWIW+Y+I PVAWT+ G+I SQ GDVE I P
Sbjct: 1304 AAVFAGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVP 1363
Query: 1200 TFRG--TVKEYLKESLGYGPGMVGASAAMLXXXXXXXXXXXXXXXXXLNFQRR 1250
T+K Y++ GY + A +L LNFQ+R
Sbjct: 1364 GMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3581 (1265.6 bits), Expect = 0., P = 0.
Identities = 682/1256 (54%), Positives = 888/1256 (70%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPP SGK+TLLLALAGKLD +L+ SG +TYNG+ L+EF + SAYI Q D H+
Sbjct: 197 MTLLLGPPSSGKTTLLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVG 256
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
+TV+ETLDF+ARCQG + + +L R EK+ I P ++D FMKAS+ G K S+
Sbjct: 257 IMTVKETLDFSARCQGVGTRYDL-LNELARREKDAGIFPEADVDLFMKASAAQGVKSSLI 315
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY L +LGLD+C DT+VG +M+RG+SGGQKKRVTTGEMIVGP KTLFMDEISTGLDSST
Sbjct: 316 TDYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 375
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQIVKC++ VH +AT L++LLQP PETF+LFDD++LLS+G +VYQGPR +LEFFES
Sbjct: 376 TFQIVKCLQQIVHLTEATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFES 435
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
GF+ P RKG ADFLQEVTSKKDQ +YW D ++PY ++PVSE A++FK G L + L
Sbjct: 436 FGFKCPERKGTADFLQEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNEL 495
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
+VP+DKSKSH +AL KY++ K EL ++C+ +E +L+ R+ FFY+F+T Q+ + +T
Sbjct: 496 SVPYDKSKSHKAALMFDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITS 555
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T++L+T H +E +Y+ F M+ MFN +E+ + I RLPVFYKQRD FHP W
Sbjct: 556 TLYLRTEMHTRNEIDANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPW 615
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
+++ +++L +P+SI E+ W + YY++G+AP A RFF+ L++F I QMA G++R +A
Sbjct: 616 TYTLPTFLLGIPISIFESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIA 675
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
S R M IANT G +L + L GGF++P+ I WW W YW+SPLSY +AI+VNE A
Sbjct: 676 STCRTMTIANTGGVLVLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFA 735
Query: 541 TRWMKKSAIGNNT--VGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNP 598
RWM K + GN+T +G +VL+ + D WYW+GVG +L + +FN TLAL YL+P
Sbjct: 736 PRWMNKMS-GNSTTRLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDP 794
Query: 599 LRKSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYY 658
L K+Q ++ ++ EE K G +++ E+++ S+ KKGM++PF PL M+F ++ Y+
Sbjct: 795 LGKAQAILPKEEDEEAKGKAG-SNKETEMESVSA-----KKGMVLPFTPLAMSFDDVKYF 848
Query: 659 VDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE 718
VD P MR +G+ E +LQLL V+ F PGVLTAL+G SGAGKTTLMDVLAGRKTGGYIE
Sbjct: 849 VDMPAEMREQGVQETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE 908
Query: 719 GDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVE 778
GD+++SG+PK+Q TFARISGY EQ D+HSPQVT+ ESL FSA LRL KE+SK+ + FV+
Sbjct: 909 GDVRVSGFPKKQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVD 968
Query: 779 EVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXX 838
+VM LVEL LR A+VG PG GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD
Sbjct: 969 QVMELVELVDLRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1028
Query: 839 XXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYF 898
NTVDTGRTVVCTIHQPSI+IFEAFDELLLMKRGG VIY G LG +S +++YF
Sbjct: 1029 IVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYF 1088
Query: 899 QGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPD 958
+ G+P IP YNPATW+LE ++ A E KLGVDFA +YK S + ++ ++ LSVPP
Sbjct: 1089 ESFPGVPKIPEKYNPATWMLEASSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQ 1148
Query: 959 DSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGS 1018
+ L FA+ +SQN QF CLWKQ YWRSP YN VR FT +L++GSVFW +G
Sbjct: 1149 GATDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGG 1208
Query: 1019 QRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQG 1078
+R + Q L MV+GA+YA+ +F+G+NN ++VQP+V++ERTVFYREKAAGMYS IP+A +Q
Sbjct: 1209 KRSNVQDLTMVIGAIYAAVVFVGINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAISQV 1268
Query: 1079 LVEIPYVFVQTLLFGVITYFMVNFERTMRKXXXXXXXXXXXXXXXXXXGMMVVGLTPNQH 1138
E+PYV +QT + +I Y MV FE K GMM V LTPNQ
Sbjct: 1269 TCELPYVLIQTTYYSLIIYSMVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQ 1328
Query: 1139 LAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIV- 1197
+A+I +SAFY + NL SGF +P+P IP WW+W+Y+I PVAWT+ G+I+SQ GDVET I
Sbjct: 1329 VASIFASAFYGIFNLFSGFFIPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIAL 1388
Query: 1198 ---EPTFRGTVKEYLKESLGYGPGMVGASAAMLXXXXXXXXXXXXXXXXXLNFQRR 1250
P TVK+Y+K+ G+ +G A +L LNFQ R
Sbjct: 1389 LGGAPGL--TVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3513 (1241.7 bits), Expect = 0., P = 0.
Identities = 673/1250 (53%), Positives = 875/1250 (70%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
M LLLGPP SGK+TLLLALAGKLD L ++G +TYNG ++EF QR +AYIGQ D HI
Sbjct: 182 MALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIG 241
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
E+TVRET +AAR QG + + +L R EKE +I+P+P+ID FMKA S G+K +V
Sbjct: 242 EMTVRETFAYAARFQGVGSRYDM-LTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVM 300
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY+L +LGL++C+DT+VG +MLRG+SGGQKKRVTTGEM+VGP + LFMDEISTGLDSST
Sbjct: 301 TDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSST 360
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
T+QIV +RN+VH + TAL++LLQP PETF LFDD++L+++G ++Y+GPR V+EFFE+
Sbjct: 361 TYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFET 420
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
+GF+ PPRKGVADFLQEVTSKKDQ +YWA +PY F+ V E A AF+S G+ + L
Sbjct: 421 MGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDEL 480
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
A+PFDK+KSHP+AL T KY V EL +T F+RE LL+ R+ F Y F+ Q+ + FLT
Sbjct: 481 ALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTM 540
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+F +T E G+LY FF ++ +MFN SEL + I++LPVFYKQRD F+PAW
Sbjct: 541 TLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAW 600
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
+S+ W+L++P+S +EA + + I YY +GF P GR F+ +LL ++QMA L++M+A
Sbjct: 601 VYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVA 660
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
++ R+M++ANTFG+ +ML LGG ++ ++ IK WWIW YW+SP+ YGQ+AI NEF
Sbjct: 661 ALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFG 720
Query: 541 TRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLR 600
W + + T+G L S YWYW+G G +L + LFN TLAL +LN L
Sbjct: 721 HSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLG 780
Query: 601 KSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYYVD 660
K Q VI + + + + S+G ++ ++ KK+GM++PF P ++TF N+ Y VD
Sbjct: 781 KPQAVIAEEPASDETELQSARSEGV-VEAGAN----KKRGMVLPFEPHSITFDNVVYSVD 835
Query: 661 TPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 720
PQ M +G E +L LL V+G F PGVLTAL+G SGAGKTTLMDVLAGRKTGGYI+G+
Sbjct: 836 MPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGN 895
Query: 721 IKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEV 780
I ISGYPK Q TFARISGY EQ D+HSP VT+ ESL +SA LRLPKE+ K++R F+EEV
Sbjct: 896 ITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEV 955
Query: 781 MSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXXXX 840
M LVEL LR ALVG PG GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD
Sbjct: 956 MELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1015
Query: 841 XXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQG 900
NTVDTGRTVVCTIHQPSI+IFEAFDEL L+KRGG IY G LG S +I+YF+
Sbjct: 1016 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFES 1075
Query: 901 LDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPDDS 960
+ GI I GYNPATW+LEV+TT+ E LGVDFA VYKNSE Y+ + IK LS P S
Sbjct: 1076 IQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGS 1135
Query: 961 EPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQR 1020
+ L F + YSQ++L+Q LWKQ+ YWR+P Y AVR FT AL+ G++FWD+G +
Sbjct: 1136 KDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKT 1195
Query: 1021 DSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLV 1080
+ Q L MG++Y + LFLG+ NAASVQP+V++ERTVFYRE+AAGMYS +P+A AQ +
Sbjct: 1196 KTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFI 1255
Query: 1081 EIPYVFVQTLLFGVITYFMVNFERTMRKXXXXXXXXXXXXXXXXXXGMMVVGLTPNQHLA 1140
EIPYV VQ +++G+I Y M+ FE T K GMM V +TPN H+A
Sbjct: 1256 EIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIA 1315
Query: 1141 AIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVEPT 1200
+++SSAFY + NL SGFL+P+PS+P WW W+Y++ PVAWTL G+I+SQ GD+ + +
Sbjct: 1316 SVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMADSN 1375
Query: 1201 FRGTVKEYLKESLGYGPGMVGASAAMLXXXXXXXXXXXXXXXXXLNFQRR 1250
+VK++++E GY G +G AAM NFQ+R
Sbjct: 1376 M--SVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3393 (1199.5 bits), Expect = 0., P = 0.
Identities = 653/1256 (51%), Positives = 862/1256 (68%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPP SGK+TLL ALAGKLD L SG ITY G E EF Q+ AYI Q D H
Sbjct: 203 MTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFG 262
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
E+TVRE LDF+ RC G + + +L+R EKE I+P+P+IDAFMK+ ++ G++ S+
Sbjct: 263 EMTVREILDFSGRCLGVGSRYQL-MSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLV 321
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDYVL +LGLD+C+D + G M RG+SGGQKKR+TTGEM+VGP + LFMDEISTGLDSST
Sbjct: 322 TDYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSST 381
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQI K +R VH D T +++LLQP PETFELFDD++LLS+G +VYQGPR VLEFFE
Sbjct: 382 TFQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEY 441
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
GF+ P RKGVADFLQEVTSKKDQ +YW +PY ++ VS+ ++ F + G+ L S
Sbjct: 442 FGFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEF 501
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
VP+DK+K+H +AL T KY +S WELF+ CF RE LL+ R+ F Y+F+T Q+ + +T
Sbjct: 502 RVPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITM 561
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T++L+T H + G + FF ++++MFN +EL + RLPVFYKQRD F+P W
Sbjct: 562 TVYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPW 621
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
A+++ +W+L++PLS+IE+ +W + YYT+GFAP A RFFR +L F ++QMAL L+R +
Sbjct: 622 AFALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLG 681
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
+I R VI+N+ G+ ++L + LGGFII K+ I+ W W Y++SP+ YGQ+AI +NEF
Sbjct: 682 AIGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLD 741
Query: 541 TRWMKKS---AIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLN 597
RW + I TVG +L S T+ YW+W+ + +L ++ LFN LAL YLN
Sbjct: 742 ERWSSPNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLN 801
Query: 598 PL--RKSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNI 655
PL K+ VV + D+++ +G EL ++S++ G K+GM++PF PL++ F+N+
Sbjct: 802 PLGNSKATVVEEGKDKQKGE-NRGTEGSVVELNSSSNK--GPKRGMVLPFQPLSLAFNNV 858
Query: 656 SYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG 715
+YYVD P M+++G+ +LQLL +V G F PG+LTALVG SGAGKTTLMDVLAGRKTGG
Sbjct: 859 NYYVDMPSEMKAQGVEGDRLQLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGG 918
Query: 716 YIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHE 775
YIEG I ISGYPK Q+TFAR+SGY EQ D+HSP VT+ ESL +SA LRL +I R
Sbjct: 919 YIEGSISISGYPKNQTTFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTREL 978
Query: 776 FVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXX 835
FVEEVM LVEL LR+++VG PG GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD
Sbjct: 979 FVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1038
Query: 836 XXXXXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMI 895
NTVDTGRTVVCTIHQPSI+IFE+FDELLLMKRGG+VIY G LG HSQ ++
Sbjct: 1039 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLV 1098
Query: 896 DYFQGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSV 955
+YF+ ++G+P I GYNPATW+L+VTT ++E ++ +DFA ++ NS YR + IK LS
Sbjct: 1099 EYFEAVEGVPKINDGYNPATWMLDVTTPSMESQMSLDFAQIFSNSSLYRRNQELIKDLST 1158
Query: 956 PPDDSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWD 1015
PP S+ + F + Y+Q++ +Q C WKQ YWR PQYNA+R T V ++ G +FW
Sbjct: 1159 PPPGSKDVYFKTKYAQSFSTQTKACFWKQYWSYWRHPQYNAIRFLMTVVIGVLFGLIFWQ 1218
Query: 1016 VGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAA 1075
+G++ ++ Q L GA+YA+ LFLG NAA+VQP ++IERTVFYREKAAGMYS IP+A
Sbjct: 1219 IGTKTENEQDLNNFFGAMYAAVLFLGALNAATVQPAIAIERTVFYREKAAGMYSAIPYAI 1278
Query: 1076 AQGLVEIPYVFVQTLLFGVITYFMVNFERTMRKXXXXXXXXXXXXXXXXXXGMMVVGLTP 1135
+Q VEI Y +QT ++ +I Y M+ TM K GMM++ LTP
Sbjct: 1279 SQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTP 1338
Query: 1136 NQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETM 1195
N +A I S F SL NL SGFL+P+P IP WW W+Y+ +PVAWTL G+I+SQ+GD ++M
Sbjct: 1339 NYQIAGICMSFFLSLWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKDSM 1398
Query: 1196 I-VEPTFRGTVKEYLKESLGYGPGMVGASAAMLXXXXXXXXXXXXXXXXXLNFQRR 1250
+ + +K LKE G+ + A + LNFQRR
Sbjct: 1399 VHISGIGDIDLKTLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGIKFLNFQRR 1454
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3355 (1186.1 bits), Expect = 0., P = 0.
Identities = 648/1261 (51%), Positives = 865/1261 (68%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
+TLLLGPP SGK+TLLLALAG+L NL SG ITYNG++L E R SAY+ Q D H+A
Sbjct: 163 LTLLLGPPSSGKTTLLLALAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVA 222
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
E+TVR+TL+FA RCQG + + +L R EK I P+ ++D FMK+ ++GG + S+
Sbjct: 223 EMTVRQTLEFAGRCQGVGFKYDMLL-ELARREKLAGIVPDEDLDIFMKSLALGGMETSLV 281
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
+YV+ +LGLD C+DT+VG EM++G+SGGQKKR+TTGE++VGP + LFMDEIS GLDSST
Sbjct: 282 VEYVMKILGLDTCADTLVGDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSST 341
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
T QI+ +R+ H ++ T +++LLQP PET+ELFDD++L+S+G ++YQGPR EVL+FF S
Sbjct: 342 THQIIMYMRHSTHALEGTTVISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSS 401
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
LGF P RK VADFLQEVTSKKDQ +YW+ +PY ++P + A AF+S GK L L
Sbjct: 402 LGFTCPDRKNVADFLQEVTSKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKL 461
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
VPFDK +H +AL+T++Y V K EL + FA + L+ ++ F Y+F+ Q+ V +T
Sbjct: 462 EVPFDKRFNHSAALSTSQYGVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITM 521
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+F +T H G +YL +F MV ++FN F+E+P+L+++LPV YK RD +F+P+W
Sbjct: 522 TVFCRTTMHHNTIDDGNIYLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSW 581
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
A+++ SW+L +P SIIE+ W + YYT+G+ P RF + LL FS+HQM+LGL+R+M
Sbjct: 582 AYTLPSWLLSIPTSIIESATWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMG 641
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
S+ R M++ANTFGS +ML ++ LGGFII ++SI SWWIW YW+SPL Y Q+A SVNEF
Sbjct: 642 SLGRHMIVANTFGSFAMLVVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLG 701
Query: 541 TRWMKKSAIGNNT---VGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLN 597
W K + GN+T +G +L SL + +YWYW+GV +L Y LFN + TL LA+LN
Sbjct: 702 HNWQKTA--GNHTSDSLGLALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLN 759
Query: 598 PLRKSQVVIQSDDREENSVKKGVASQGCELKTT---SSREDGK---KKGMIMPFHPLTMT 651
P K Q V+ ++ +E K+ EL+ S GK +GM++PF PL+++
Sbjct: 760 PWGKFQAVVSREELDEREKKRKGDEFVVELREYLQHSGSIHGKYFKNRGMVLPFQPLSLS 819
Query: 652 FHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGR 711
F NI+YYVD P ++ +GI E +LQLL N++G F PGVLTALVG SGAGKTTLMDVLAGR
Sbjct: 820 FSNINYYVDVPLGLKEQGILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGR 879
Query: 712 KTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKD 771
KTGG IEGD+ ISG+PK Q TFARISGY EQ DVHSP +T+ ESL FSA LRLP +I +
Sbjct: 880 KTGGTIEGDVYISGFPKRQETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSE 939
Query: 772 QRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 831
+ FV EVM LVEL SL ALVG PG GLSTEQRKRLTIAVELVANPSI+FMDEPTSG
Sbjct: 940 TQRAFVHEVMELVELTSLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 999
Query: 832 LDXXXXXXXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHS 891
LD N V+TGRT+VCTIHQPSI+IFE+FDELL MKRGG +IY G LG S
Sbjct: 1000 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKS 1059
Query: 892 QIMIDYFQGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIK 951
+I YF+ ++G+ I G+NPA W+L+VT + E +LGVDFA +Y+NS + + I+
Sbjct: 1060 CELIKYFESIEGVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIE 1119
Query: 952 SLSVPPDDSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGS 1011
LS P + ++ ++F + YSQ+ SQF CLWKQNL YWR+PQY AVR +T V +L+LG+
Sbjct: 1120 VLSKPSNIAKEIEFPTRYSQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGT 1179
Query: 1012 VFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPI 1071
+ W GS+RD+ Q LF MG++YA+ LF+G+ NA + QP+VSIER V YRE+AAGMYS +
Sbjct: 1180 ICWKFGSKRDTQQQLFNAMGSMYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSAL 1239
Query: 1072 PFAAAQGLVEIPYVFVQTLLFGVITYFMVNFERTMRKXXXXXXXXXXXXXXXXXXGMMVV 1131
PFA AQ +E PYV Q+ ++ I Y M FE + K GMM
Sbjct: 1240 PFAFAQVFIEFPYVLAQSTIYSTIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTT 1299
Query: 1132 GLTPNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGD 1191
+TPN ++A+II++ FY L NL SGF++P IP WW W+Y+ +PVAWTL G++ SQ GD
Sbjct: 1300 AITPNHNVASIIAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGD 1359
Query: 1192 VETMIV--EPTFRGTVKEYLKESLGYGPGMVGASAAMLXXXXXXXXXXXXXXXXXLNFQR 1249
E + + + VK+ L++ +GY +G SA M+ NFQR
Sbjct: 1360 DERSVKLSDGIHQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQR 1419
Query: 1250 R 1250
R
Sbjct: 1420 R 1420
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3344 (1182.2 bits), Expect = 0., P = 0.
Identities = 655/1258 (52%), Positives = 853/1258 (67%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPP SGK+TLL ALAGKLD L SG ITY G E EF Q+ AYI Q D H
Sbjct: 201 MTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFG 260
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
E+TVRE+LDF+ RC G + + +L+R E+E I+P+PEIDAFMK+ ++ G++ S+
Sbjct: 261 EMTVRESLDFSGRCLGVGTRYQL-LTELSRREREAGIKPDPEIDAFMKSIAISGQETSLV 319
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDYVL +LGLD+C+DT+VG M RG+SGGQ+KR+TTGEM+VGP LFMDEISTGLDSST
Sbjct: 320 TDYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSST 379
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQI K +R VH D T +++LLQP PETFELFDD++LLS+G +VYQG R VLEFFE
Sbjct: 380 TFQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEY 439
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
+GF+ P RKG+ADFLQEVTSKKDQ +YW PY ++ V + ++ F S G+ L S
Sbjct: 440 MGFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEF 499
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
VP+DK+K+HP+AL T KY +S +LF+ CF RE LL+ R+ F Y+F+T Q+ + +
Sbjct: 500 RVPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAM 559
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T++ +T H + G + FF ++++MFN +EL + RLPVF+KQRD F+P W
Sbjct: 560 TVYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPW 619
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
A+++ ++L++PLS+IE+V+W + YYT+GFAP A RFFR +L F ++QMAL L+R +
Sbjct: 620 AFALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLG 679
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
++ R VIAN+ G+ ++L + +LGGFII K+ I SW W Y+ SP+ YGQ+A+ +NEF
Sbjct: 680 ALGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLD 739
Query: 541 TRW---MKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLN 597
RW + I TVG +L S T+ YW+W+ +G +L + LFN +AL YLN
Sbjct: 740 ERWGSPNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLN 799
Query: 598 PLRKSQ---VVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHN 654
PL S+ VV + D+ + S G EL +TSS G KKGM++PF PL++ F+N
Sbjct: 800 PLGNSKATTVVEEGKDKHKGS-HSGTGGSVVELTSTSSH--GPKKGMVLPFQPLSLAFNN 856
Query: 655 ISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG 714
++YYVD P M+++G+ +LQLL +V G F PGVLTALVG SGAGKTTLMDVLAGRKTG
Sbjct: 857 VNYYVDMPAEMKAQGVEGDRLQLLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG 916
Query: 715 GYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRH 774
GY+EG I ISGYPK Q+TFAR+SGY EQ D+HSP VT+ ESL +SA LRL +I R
Sbjct: 917 GYVEGSINISGYPKNQATFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTRE 976
Query: 775 EFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDX 834
FVEEVM LVEL LR+++VG PG GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD
Sbjct: 977 MFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1036
Query: 835 XXXXXXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
NTVDTGRTVVCTIHQPSI+IFE+FDELLLMKRGG+VIY G LG HSQ +
Sbjct: 1037 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKL 1096
Query: 895 IDYFQGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLS 954
++YF+ ++G+P I GYNPATW+L+VTT ++E ++ VDFA ++ NS R + IK LS
Sbjct: 1097 VEYFEAIEGVPKIKDGYNPATWMLDVTTPSMESQMSVDFAQIFVNSSVNRRNQELIKELS 1156
Query: 955 VPPDDSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFW 1014
PP S L F + Y+Q + +Q C WK WR PQYNA+R T V ++ G +FW
Sbjct: 1157 TPPPGSNDLYFRTKYAQPFSTQTKACFWKMYWSNWRYPQYNAIRFLMTVVIGVLFGLLFW 1216
Query: 1015 DVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFA 1074
G++ + Q L GA+YA+ LFLG NAA+VQP V+IERTVFYREKAAGMYS IP+A
Sbjct: 1217 QTGTKIEKEQDLNNFFGAMYAAVLFLGATNAATVQPAVAIERTVFYREKAAGMYSAIPYA 1276
Query: 1075 AAQGLVEIPYVFVQTLLFGVITYFMVNFERTMRKXXXXXXXXXXXXXXXXXXGMMVVGLT 1134
+Q VEI Y +QT ++ +I Y M+ ++ T+ K GMM+V LT
Sbjct: 1277 ISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALT 1336
Query: 1135 PNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVET 1194
PN +A I S F S NL SGFL+P+P IP WW W+Y+ SPVAWTL GII+SQ+GD ++
Sbjct: 1337 PNYQIAGICLSFFLSFWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRDS 1396
Query: 1195 MIVEPTFRG--TVKEYLKESLGYGPGMVGASAAMLXXXXXXXXXXXXXXXXXLNFQRR 1250
IV T G ++K LK G+ + A + LNFQRR
Sbjct: 1397 -IVHITGVGDMSLKTLLKNGFGFDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3183 (1125.5 bits), Expect = 0., P = 0.
Identities = 611/1252 (48%), Positives = 831/1252 (66%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
+TLLLGPP GK+TLL AL+G L+ NL SG I+YNG LDEF Q+ SAYI Q D HIA
Sbjct: 202 LTLLLGPPSCGKTTLLKALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIA 261
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
E+TVRET+DF+ARCQG S + ++++ EKE+ I P+ E+DA+MKA SV G + S+
Sbjct: 262 EMTVRETVDFSARCQGVG-SRTDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQ 320
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY+L +LGLD+C++ ++G M RG+SGGQKKR+TT EMIVGP K LFMDEI+ GLDSST
Sbjct: 321 TDYILKILGLDICAEILIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSST 380
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
FQIVK ++ F H AT L++LLQP PE+++LFDD++L++ G +VY GPR EVL FFE
Sbjct: 381 AFQIVKSLQQFAHISSATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFED 440
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
GFR P RKGVADFLQEV SKKDQA+YW PY F+ V ++ FK GK +E +L
Sbjct: 441 CGFRCPERKGVADFLQEVISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTL 500
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
+ P+D+SKSH AL+ + Y++ WELF C +RE LL+ R+ F Y+F+T Q+ F+T
Sbjct: 501 SKPYDRSKSHKDALSFSVYSLPNWELFIACISREYLLMKRNYFVYIFKTAQLVMAAFITM 560
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+F++TR D G Y++ FF ++ ++ + F EL + RL VFYKQ+ F+PAW
Sbjct: 561 TVFIRTRMG-IDIIHGNSYMSALFFALIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAW 619
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
A++I + +L+VPLS E++VW+C+ YY +G+ P A RFF+ +LLF++H ++ ++R +A
Sbjct: 620 AYAIPATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISMFRCLA 679
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
+I + +V + T GS +L + GF+IP S+ +W W +W +PLSYG+ +SVNEF A
Sbjct: 680 AIFQTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLA 739
Query: 541 TRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLR 600
RW + N T+G +L + + + Y YW+ + +L + LFN I TLAL +L
Sbjct: 740 PRWNQMQP-NNFTLGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPT 798
Query: 601 KSQVVIQSDDREE-NSVKKGVASQGCELKTTSSREDGKKKG-MIMPFHPLTMTFHNISYY 658
S+ +I D E +K KTT S +++ M++PF PLT+TF +++Y+
Sbjct: 799 SSRAMISQDKLSELQGTEKSTEDSSVRKKTTDSPVKTEEEDKMVLPFKPLTVTFQDLNYF 858
Query: 659 VDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE 718
VD P MR +G +KKLQLLS+++G F PG+LTAL+G SGAGKTTL+DVLAGRKT GYIE
Sbjct: 859 VDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIE 918
Query: 719 GDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVE 778
GDI+ISG+PK Q TFAR+SGY EQ D+HSP +T+EES+ +SA LRL EI + +FV+
Sbjct: 919 GDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFVK 978
Query: 779 EVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXX 838
+V+ +ELD ++ +LVG G GLSTEQRKRLTIAVELVANPSIIFMDEPT+GLD
Sbjct: 979 QVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAA 1038
Query: 839 XXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYF 898
N DTGRT+VCTIHQPSI+IFEAFDEL+L+KRGGR+IY G LG HS+ +I+YF
Sbjct: 1039 IVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYF 1098
Query: 899 QGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPD 958
+ + IP I +NPATW+L+V++ +VE +LGVDFA +Y +S Y+ +K LS P
Sbjct: 1099 ESVPEIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKIYHDSALYKRNSELVKQLSQPDS 1158
Query: 959 DSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGS 1018
S ++F T++Q+W QF LWK NL YWRSP YN +R+ T V++LI G++FW G
Sbjct: 1159 GSSDIQFKRTFAQSWWGQFKSILWKMNLSYWRSPSYNLMRMMHTLVSSLIFGALFWKQGQ 1218
Query: 1019 QRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQG 1078
D+ QS+F V GA+Y LFLG+NN AS ER V YRE+ AGMYS +A Q
Sbjct: 1219 NLDTQQSMFTVFGAIYGLVLFLGINNCASALQYFETERNVMYRERFAGMYSATAYALGQV 1278
Query: 1079 LVEIPYVFVQTLLFGVITYFMVNFERTMRKXXXXXXXXXXXXXXXXXXGMMVVGLTPNQH 1138
+ EIPY+F+Q F ++TY M+ F + K M +V +TPN
Sbjct: 1279 VTEIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFM 1338
Query: 1139 LAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVE 1198
+AAI+ S FY NL SGFL+PQ +PGWWIW YY++P +WTL G ISSQ GD+ I
Sbjct: 1339 VAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEINV 1398
Query: 1199 PTFRGTVKEYLKESLGYGPGMVGASAAMLXXXXXXXXXXXXXXXXXLNFQRR 1250
TV +LK+ G+ ++ +A + LNFQRR
Sbjct: 1399 FGQSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAFFVGKLNFQRR 1450
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3132 (1107.6 bits), Expect = 0., P = 0.
Identities = 601/1252 (48%), Positives = 824/1252 (65%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
+TLLLGPPG GK+TLL AL+G L+ NL G I+YNG L+E Q+ SAYI Q D HIA
Sbjct: 167 LTLLLGPPGCGKTTLLKALSGNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIA 226
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
E+T RET+DF+ARCQG S + ++++ EK+ I P+PEIDA+MKA SV G K S+
Sbjct: 227 EMTTRETIDFSARCQGVG-SRTDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQ 285
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY+L +LGLD+C++T+VG+ M RG+SGGQKKR+TT EMIVGP K LFMDEI+ GLDSST
Sbjct: 286 TDYILKILGLDICAETLVGNAMKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSST 345
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
FQI+K ++ H +AT ++LLQP PE+++LFDD+VL+++G +VY GPR +VL+FFE
Sbjct: 346 AFQIIKSLQQVAHITNATVFVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEE 405
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
GF+ P RKGVADFLQEV SKKDQ +YW + P+ F+ V ++ FK G+ +E +L
Sbjct: 406 CGFQCPERKGVADFLQEVISKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEAL 465
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
+ P+D SK+H AL+ Y++ KWELFR C +RE LL+ R+ F Y+F+T Q+ +T
Sbjct: 466 SKPYDISKTHKDALSFNVYSLPKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITM 525
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+F++TR D G Y++C FF V ++ + EL + + RL VFYKQ+ F+PAW
Sbjct: 526 TVFIRTRMD-IDIIHGNSYMSCLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAW 584
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
A++I + +L++PLS E++VW+C+ YY +G+ P RFFR ++LF++H ++ ++R +A
Sbjct: 585 AYAIPATVLKIPLSFFESLVWTCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIA 644
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
+I + V A T GS ML + GF IP + W W +WV+P+SY + +SVNEF A
Sbjct: 645 AIFQTGVAAMTAGSFVMLITFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLA 704
Query: 541 TRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLR 600
RW K N T+G +L S L DDY YW+ + +L +FN I TLAL++L
Sbjct: 705 PRWQKMQPT-NVTLGRTILESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPT 763
Query: 601 KSQVVIQSDDREE-NSVKKGVASQGCELKTT-SSREDGKKKGMIMPFHPLTMTFHNISYY 658
S+ +I D E K + L ++ + ED K MI+PF PLT+TF +++YY
Sbjct: 764 SSRPMISQDKLSELQGTKDSSVKKNKPLDSSIKTNEDPGK--MILPFKPLTITFQDLNYY 821
Query: 659 VDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE 718
VD P M+ +G +EKKLQLLS ++G F PGVLTAL+G SGAGKTTL+DVLAGRKT GYIE
Sbjct: 822 VDVPVEMKGQGYNEKKLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIE 881
Query: 719 GDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVE 778
G+I+ISG+ K Q TFAR+SGY EQ D+HSP +T+EESL +SA LRL EI+ + FV+
Sbjct: 882 GEIRISGFLKVQETFARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVK 941
Query: 779 EVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDXXXXX 838
+V+ +EL+ ++ ALVG G GLSTEQRKRLT+AVELVANPSIIFMDEPT+GLD
Sbjct: 942 QVLETIELEEIKDALVGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAA 1001
Query: 839 XXXXXXXNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYF 898
N +TGRT+VCTIHQPSI IFEAFDEL+L+KRGGR+IY G LG HS +I+YF
Sbjct: 1002 IVMRAVKNVAETGRTIVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYF 1061
Query: 899 QGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPD 958
Q + G+ I YNPATW+LEVT+ +VE +L +DFA +Y S+ Y+ +K LS P
Sbjct: 1062 QNIPGVAKIRDKYNPATWMLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSKPDH 1121
Query: 959 DSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGS 1018
S L F T++QNW QF CLWK +L YWRSP YN +R+ T +++ I G +FW+ G
Sbjct: 1122 GSSDLHFKRTFAQNWWEQFKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGK 1181
Query: 1019 QRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQG 1078
+ D+ Q+LF V+GA+Y LF+G+NN S ER V YRE+ AGMYS +A AQ
Sbjct: 1182 KIDTQQNLFTVLGAIYGLVLFVGINNCTSALQYFETERNVMYRERFAGMYSAFAYALAQV 1241
Query: 1079 LVEIPYVFVQTLLFGVITYFMVNFERTMRKXXXXXXXXXXXXXXXXXXGMMVVGLTPNQH 1138
+ EIPY+F+Q+ F ++ Y M+ F + K M ++ +TPN
Sbjct: 1242 VTEIPYIFIQSAEFVIVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFM 1301
Query: 1139 LAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVE 1198
+AAI+ S F++ N+ +GFL+P+P IP WW+WFYYI+P +WTL SSQ GD+ I
Sbjct: 1302 VAAILQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINA 1361
Query: 1199 PTFRGTVKEYLKESLGYGPGMVGASAAMLXXXXXXXXXXXXXXXXXLNFQRR 1250
TV +L++ G+ + +A +L LNFQ+R
Sbjct: 1362 FGETKTVASFLEDYFGFHHDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1829 (648.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 342/645 (53%), Positives = 464/645 (71%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPP SGK+TLLLALAGKLD +L SG ITYNG++LDEF ++ SAYI Q D H+
Sbjct: 199 MTLLLGPPSSGKTTLLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVG 258
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
+TV+ETLDF+ARCQG + + +L R EK+ I P ++D FMKAS+ G K+S+
Sbjct: 259 IMTVKETLDFSARCQGVGTRYDL-LNELARREKDAGIFPEADVDLFMKASAAQGVKNSLV 317
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY L +LGLD+C DT+VG +M+RG+SGGQKKRVTTGEMIVGP KTLFMDEISTGLDSST
Sbjct: 318 TDYTLKILGLDICKDTIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 377
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
TFQIVKC++ VH +AT LM+LLQP PETF+LFDD++L+S+G +VYQGPR +LEFFES
Sbjct: 378 TFQIVKCLQQIVHLNEATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFES 437
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
GF+ P RKG ADFLQEVTSKKDQ +YW + ++PY ++PVSE A+ +KS G + + L
Sbjct: 438 FGFKCPERKGTADFLQEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNEL 497
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
AVPFDKS+ H +AL KY+VSK EL ++C+ +E LL+ R+ FFY+F+T Q+ + +T
Sbjct: 498 AVPFDKSRGHKAALVFDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITS 557
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+FL+T + +E LY+ FGM+ MFN F+E+ +++SRLPVFYKQRD F+P+W
Sbjct: 558 TLFLRTEMNTRNEGDANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSW 617
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
+S+ +++L +P SI+E+ W + YY++GFAP A RFF+ LL+F I QMA L+R++A
Sbjct: 618 TFSLPTFLLGIPSSILESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIA 677
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
S+ R M+IANT G+ ++L + LLGGF++PK I WW W YWVSPL+Y + + VNE A
Sbjct: 678 SVCRTMMIANTGGALTLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFA 737
Query: 541 TRWMKKSAIGNNTV--GYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNP 598
RWM K A N+T+ G VL++ + WYW+ VG +L + LFN + TLAL YLNP
Sbjct: 738 PRWMNKMASSNSTIKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNP 797
Query: 599 LRKSQVVIQSDDREENSVKKGVASQGCE-LKTTSSREDGKKKGMI 642
L K ++ ++ E+ A QG + ++ + S DG ++G +
Sbjct: 798 LGKKAGLLPEEENED-------ADQGKDPMRRSLSTADGNRRGEV 835
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7PC88 | AB31G_ARATH | No assigned EC number | 0.7504 | 0.9912 | 0.8688 | yes | no |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5193 | 0.9992 | 0.8548 | N/A | no |
| Q5Z9S8 | PDR12_ORYSJ | No assigned EC number | 0.5549 | 0.9992 | 0.8326 | yes | no |
| Q8S628 | PDR13_ORYSJ | No assigned EC number | 0.6896 | 0.9984 | 0.8660 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.5629 | 0.9944 | 0.8625 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.5527 | 0.9952 | 0.8675 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.556 | 0.9952 | 0.8662 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.5562 | 0.996 | 0.8544 | N/A | no |
| Q8GU89 | PDR4_ORYSJ | No assigned EC number | 0.5516 | 0.9968 | 0.8593 | yes | no |
| Q9NGP5 | ABCG2_DICDI | No assigned EC number | 0.3104 | 0.8976 | 0.8448 | yes | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5123 | 0.9944 | 0.8590 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | fgenesh2_kg.4__961__AT2G29940.1 | annotation not avaliable (1428 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1250 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-99 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 6e-98 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-79 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-61 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 7e-61 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-58 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-55 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-54 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-51 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-47 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-40 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-39 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-38 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-38 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-37 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-31 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-31 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-29 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-29 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-28 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-26 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 9e-26 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-25 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-24 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-23 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-23 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 5e-23 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-23 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 9e-23 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-22 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 6e-22 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-21 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-21 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-20 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-20 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-20 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-19 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-19 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-19 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 4e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-19 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 5e-19 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-18 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-18 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-18 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-18 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-18 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-18 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 7e-18 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-17 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-17 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-17 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-17 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-17 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-17 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-17 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 6e-17 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 6e-17 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 7e-17 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 7e-17 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 8e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-16 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-16 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-16 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-16 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-16 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-16 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 7e-16 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 7e-16 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-16 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 9e-16 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 9e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-15 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-15 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-15 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-15 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-15 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-15 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-15 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 8e-15 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 2e-14 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-14 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-14 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-14 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-14 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-14 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-14 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-14 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-14 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 4e-14 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 6e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-14 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 9e-14 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 9e-14 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 9e-14 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-13 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-13 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-13 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-13 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-13 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-13 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-13 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-13 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 5e-13 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 5e-13 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-13 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-13 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 8e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 8e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 9e-13 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 9e-13 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-12 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-12 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-12 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-12 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-12 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-12 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-12 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-12 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 5e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 5e-12 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-12 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-12 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 8e-12 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 8e-12 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 9e-12 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 9e-12 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 9e-12 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-11 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-11 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-11 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-11 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-11 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-11 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-11 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-11 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-11 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-11 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-11 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 5e-11 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 5e-11 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-11 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-11 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 6e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-10 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-10 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-10 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-10 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-10 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-10 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-10 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-10 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-10 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-10 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-10 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 5e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 6e-10 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 7e-10 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 7e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-09 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-09 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-09 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-09 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-09 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-09 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-09 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-09 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-09 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-09 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-09 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-09 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 3e-09 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-09 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-09 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-09 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-09 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-09 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-09 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 6e-09 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-09 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 7e-09 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 7e-09 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-09 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 8e-09 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 8e-09 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-09 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 8e-09 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 9e-09 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-08 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-08 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-08 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-08 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-08 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-08 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-08 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-08 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-08 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-08 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 4e-08 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-08 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 4e-08 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 5e-08 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-08 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 6e-08 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 6e-08 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 6e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 7e-08 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 7e-08 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 7e-08 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 8e-08 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 8e-08 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 8e-08 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 9e-08 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-07 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-07 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-07 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-07 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-07 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-07 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-07 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-07 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-07 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-07 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-07 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 4e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-07 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 5e-07 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 5e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 6e-07 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 6e-07 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 6e-07 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 7e-07 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 8e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 8e-07 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 9e-07 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 9e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 9e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 9e-07 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 9e-07 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-06 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-06 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-06 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-06 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-06 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-06 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-06 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-06 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-06 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-06 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-06 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-06 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-06 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-06 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-06 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-06 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-06 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-06 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 4e-06 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 4e-06 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 5e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-06 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 6e-06 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 6e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 6e-06 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 6e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 7e-06 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 8e-06 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-06 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-05 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-05 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 1e-05 | |
| pfam13476 | 204 | pfam13476, AAA_23, AAA domain | 1e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-05 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-05 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-05 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-05 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-05 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-05 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 5e-05 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 5e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 5e-05 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 6e-05 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 6e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-05 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 6e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 6e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 6e-05 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-05 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 7e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 8e-05 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 9e-05 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-05 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 9e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 9e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 9e-05 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-04 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-04 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-04 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-04 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-04 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-04 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 3e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-04 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 4e-04 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-04 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-04 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-04 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-04 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 6e-04 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 6e-04 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-04 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 7e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 7e-04 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 8e-04 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 8e-04 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 8e-04 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 9e-04 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 0.001 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 0.001 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 0.001 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 0.001 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 0.001 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 0.001 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 0.001 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 0.001 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.001 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.001 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 0.001 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 0.002 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 0.002 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 0.002 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 0.002 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 0.002 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 0.002 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 0.002 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 0.002 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 0.002 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 0.002 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.002 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 0.002 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.002 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 0.002 | |
| PRK01889 | 356 | PRK01889, PRK01889, GTPase RsgA; Reviewed | 0.002 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.002 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 0.003 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 0.003 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.003 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 0.003 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.003 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 0.004 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.004 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1729 bits (4480), Expect = 0.0
Identities = 740/1279 (57%), Positives = 944/1279 (73%), Gaps = 30/1279 (2%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
MTLLLGPP SGK+TLLLALAGKLD +L SG ITYNG+ L+EF ++ SAYI Q D H+
Sbjct: 193 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVG 252
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
+TV+ETLDF+ARCQG + + +L R EK+ I P E+D FMKA+++ G K S+
Sbjct: 253 VMTVKETLDFSARCQGVGTRYD-LLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLI 311
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
TDY L +LGLD+C DT+VG EM+RG+SGGQKKRVTTGEMIVGP KTLFMDEISTGLDSST
Sbjct: 312 TDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 371
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240
T+QIVKC++ VH +AT LM+LLQP PETF+LFDD++LLS+G +VYQGPR +LEFFES
Sbjct: 372 TYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFES 431
Query: 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSL 300
GF+ P RKG ADFLQEVTSKKDQ +YWAD +KPY ++ VSE A FKS G LE+ L
Sbjct: 432 CGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENEL 491
Query: 301 AVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTC 360
+VPFDKS+SH +AL +KY+V K EL + C+ +E LL+ R+ F Y+F+T Q+ V +
Sbjct: 492 SVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIAS 551
Query: 361 TMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAW 420
T+FL+T H +E+ GALY+ F M+ MFN F+EL ++I RLPVFYKQRD FHP W
Sbjct: 552 TVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPW 611
Query: 421 AWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480
+++ +++L +P+SIIE+VVW I YY++GFAP A RFF+ +LL+F I QMA G++R++A
Sbjct: 612 TFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIA 671
Query: 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTA 540
S+ R M+IANT G+ +L + LLGGFI+PK I +WW W YWVSPLSYG +A++VNE A
Sbjct: 672 SVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFA 731
Query: 541 TRWMKKSAIGNNT-VGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPL 599
RWM K A N+T +G VL+ + TD WYW+GVG +L + LFN + TLAL YLNPL
Sbjct: 732 PRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPL 791
Query: 600 RKSQVVIQSDDREEN-----------SVKKGVASQGCELKTTSSREDGK----------- 637
K Q +I + EE S G ++ ++ S+ E
Sbjct: 792 GKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAAN 851
Query: 638 ----KKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTAL 693
K+GM++PF PL M+F +++Y+VD P M+ +G+ E +LQLL V+G F PGVLTAL
Sbjct: 852 GVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTAL 911
Query: 694 VGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIE 753
+G SGAGKTTLMDVLAGRKTGGYIEGDI+ISG+PK+Q TFARISGY EQ D+HSPQVT+
Sbjct: 912 MGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971
Query: 754 ESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIA 813
ESL +SA LRLPKE+SK+++ FV+EVM LVELD+L+ A+VG PG GLSTEQRKRLTIA
Sbjct: 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIA 1031
Query: 814 VELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELL 873
VELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVDTGRTVVCTIHQPSI+IFEAFDELL
Sbjct: 1032 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1091
Query: 874 LMKRGGRVIYGGKLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDF 933
LMKRGG+VIY G LG +S +I+YF+ + G+P I YNPATW+LEV++ A E KLG+DF
Sbjct: 1092 LMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDF 1151
Query: 934 ANVYKNSEQYREVESSIKSLSVPPDDSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQ 993
A YK+S Y+ ++ +K LS PP + L FA+ YSQ+ QF CLWKQ YWRSP
Sbjct: 1152 AEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPD 1211
Query: 994 YNAVRLAFTTVAALILGSVFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVS 1053
YN VR FT AAL++G++FW VG++R ++ L MV+GA+YA+ LF+G+NN ++VQP+V+
Sbjct: 1212 YNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVA 1271
Query: 1054 IERTVFYREKAAGMYSPIPFAAAQGLVEIPYVFVQTLLFGVITYFMVNFERTMRKFLLYL 1113
+ERTVFYRE+AAGMYS +P+A AQ + EIPYV +QT + +I Y MV FE T KF +
Sbjct: 1272 VERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFY 1331
Query: 1114 VFTFLTFSYFTFFGMMVVGLTPNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYY 1173
+F +F YFT++GMM V LTPNQ +AAI ++AFY L NL SGF +P+P IP WW+W+Y+
Sbjct: 1332 FISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYW 1391
Query: 1174 ISPVAWTLRGIISSQLGDVETMIVEPTF--RGTVKEYLKESLGYGPGMVGASAAMLVAFS 1231
I PVAWT+ G+I SQ GDVE I P T+K Y+++ GY P +G AA+LV F+
Sbjct: 1392 ICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFT 1451
Query: 1232 VFFFGIFAFSVKFLNFQRR 1250
VFF IFAF ++ LNFQ R
Sbjct: 1452 VFFAFIFAFCIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1108 bits (2868), Expect = 0.0
Identities = 391/1289 (30%), Positives = 621/1289 (48%), Gaps = 118/1289 (9%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDG-NLNKSGSITYNGWELDEF--QVQRASAYIGQTDN 57
+T++LG PGSG STLL +A DG ++ G ITY+G +E + Y +TD
Sbjct: 89 LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDV 148
Query: 58 HIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKH 117
H LTV ETLDFAARC+ + ++R E +HI
Sbjct: 149 HFPHLTVGETLDFAARCKTPQNR----PDGVSREEYAKHIA------------------- 185
Query: 118 SVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
D + GL +T VG++ +RGVSGG++KRV+ E +G K D + GLD
Sbjct: 186 ----DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241
Query: 178 SSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEF 237
S+T + ++ ++ + +D T L+A+ Q + +ELFD +++L +GY +Y GP + ++
Sbjct: 242 SATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQY 301
Query: 238 FESLGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLE 297
FE +GF+ P R+ ADFL +TS + + K V E +++S L
Sbjct: 302 FEKMGFKCPDRQTTADFLTSLTSPA-ERQIKPGYEKK-VPRTPQEFETYWRNSPEYAQLM 359
Query: 298 SSLAVPFDKS--------------KSHPS-ALATTKYAVSKWELFRTCFAREILLISRHR 342
+ D+ ++ Y VS + C AR L + +
Sbjct: 360 KEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNP 419
Query: 343 FFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILI 402
F +F + + ++F P + FF ++ F+ E+ +
Sbjct: 420 SFTLFMVFGNIIMALILSSVFYNL---PKNTSDFYSRGGALFFAILFNAFSSLLEIASMY 476
Query: 403 SRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYM 462
P+ K R + A +IAS I +P IIE+VV++ I+Y+ + F AGRFF Y+
Sbjct: 477 EARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYL 536
Query: 463 LLLFSIHQMALGLYRMMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYW 522
L+LF L+R + ++ + + A T + +LA+ + GF IP+ S+ W W+Y+
Sbjct: 537 LILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYY 596
Query: 523 VSPLSYGQSAISVNEFTATRWMKKSAI------GNNTVGYNVLHS-HSLPTDDY------ 569
V+PL+Y ++ VNEF R+ + N V V + P DY
Sbjct: 597 VNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDY 656
Query: 570 ----------WYWLGVGVMLLYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKG 619
W G+++ + F + L + ++ ++ KK
Sbjct: 657 LKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGAKQKGEILVFRRGSLKRAKKA 716
Query: 620 VASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYYVDTPQAMRSK----------- 668
+T++S ++ + G ++ LT +++ D +
Sbjct: 717 G-------ETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEV 769
Query: 669 GIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728
I ++K +L+NV G PG LTAL+G+SGAGKTTL++VLA R T G I G ++
Sbjct: 770 KIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRP 829
Query: 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS 788
S+F R GYV+Q+D+H P T+ ESL FSA LR PK +SK ++ E+VEEV+ L+E++S
Sbjct: 830 LDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES 889
Query: 789 LRHALVGSPGSFGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRAVRNT 847
A+VG PG GL+ EQRKRLTI VELVA P ++F+DEPTSGLD++ A + + +R
Sbjct: 890 YADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL 948
Query: 848 VDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQGLDGIPLI 907
D G+ ++CTIHQPS +FE FD LLL+++GG+ +Y G LG +S +I+YF+ G P
Sbjct: 949 ADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKC 1007
Query: 908 PSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPDDSEPLKFA- 966
P NPA W+LEV A D+ V++NS +Y+ V++ + L +E
Sbjct: 1008 PEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPD 1067
Query: 967 --STYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQRDSSQ 1024
S Y+ + QF + LW+ YWR+P Y + T AAL +G F+ VG+ S Q
Sbjct: 1068 ALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQ 1124
Query: 1025 SLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLVEIPY 1084
L M A++ + + + P V+ RE+ + +S + F AAQ VEIPY
Sbjct: 1125 GLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPY 1184
Query: 1085 VFVQTLLFGVITYFMVNFERTM-------RKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQ 1137
V +F I Y+ V F + +L+ + + + F YF+ G MV+ PN
Sbjct: 1185 NLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNA 1244
Query: 1138 HLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIV 1197
AA+++S +++ G L P +PG+WI+ Y SP + ++ ++S+ L DV
Sbjct: 1245 DNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCK 1304
Query: 1198 EPTFRG-----------TVKEYLKESLGY 1215
+K YL+ + GY
Sbjct: 1305 VKELLTFNPPSGQTCGEYMKPYLENAGGY 1333
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 328 bits (844), Expect = 4e-99
Identities = 176/568 (30%), Positives = 283/568 (49%), Gaps = 34/568 (5%)
Query: 648 LTMTFHNISYYVDTPQAMRSKGIHE----------KKLQLLSNVSGIFSPGVLTALVGSS 697
LT ++ N + Q K + + LL NVSG+ PG L A++GSS
Sbjct: 1 LTYSWRNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSS 60
Query: 698 GAGKTTLMDVLAGRKTGGY-IEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESL 756
GAGKTTLM+ LA R G G + ++G P + IS YV+Q+D+ P +T+ E L
Sbjct: 61 GAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHL 120
Query: 757 WFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSF-GLSTEQRKRLTIAVE 815
F A+LR+P+ ++K ++ E V+EV+ + L + +G PG GLS +RKRL A E
Sbjct: 121 MFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASE 180
Query: 816 LVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLM 875
L+ +P ++F DEPTSGLD+ A V++ ++ G+T++CTIHQPS E+FE FD+++LM
Sbjct: 181 LLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILM 240
Query: 876 KRGGRVIYGGKLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVLEV------TTTAVEEKL 929
GRV Y G + + +F L G P P YNPA + ++V + E++
Sbjct: 241 A-EGRVAYLGS-PDQA---VPFFSDL-GHP-CPENYNPADFYVQVLAVIPGSENESRERI 293
Query: 930 GVDFANVYKNSEQYREVESSIKSLSVP----PDDSEPLKFASTYSQNWLSQFFICLWKQN 985
+ + S+ R++ + S DSE ++ Y+ +W +QF+ L +
Sbjct: 294 EKICDS-FAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEG-IGYNASWWTQFYALLKRSW 351
Query: 986 LVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNA 1045
L R P VRL T + A+++G ++ G + Q+ + GAL+ + N
Sbjct: 352 LSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQN---INGALFLFLTNMTFQNV 408
Query: 1046 ASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLVEIPYVFVQTLLFGVITYFMVNFERT 1105
V + + E VF RE +G+Y + A+ + E+P + LF ITY+M+
Sbjct: 409 FPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSG 468
Query: 1106 MRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLAAIISSAFYSLSNLLSGFLVPQPSIP 1165
FL +L L + T FG ++ + +A + F L GF + SIP
Sbjct: 469 ATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIP 528
Query: 1166 GWWIWFYYISPVAWTLRGIISSQLGDVE 1193
++ W Y+S + G++ +Q DV+
Sbjct: 529 VYFKWLSYLSWFRYGNEGLLINQWSDVD 556
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 309 bits (795), Expect = 6e-98
Identities = 114/239 (47%), Positives = 146/239 (61%), Gaps = 47/239 (19%)
Query: 647 PLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMD 706
+T+ N++Y V K QLL+N+SG PG LTAL+G SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 707 VLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPK 766
VLAGRKT G I G+I I+G P ++ F R +GYVEQ+DVHSP +T+ E+L FSA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLDK-NFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 767 EISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMD 826
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 827 EPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD LLL+KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 257 bits (660), Expect = 4e-79
Identities = 102/239 (42%), Positives = 145/239 (60%), Gaps = 45/239 (18%)
Query: 647 PLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMD 706
+T++F N++ V + QLL NVSG PG LTA++G SGAGK+TL++
Sbjct: 1 GVTLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLN 53
Query: 707 VLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPK 766
LAGR+TG + G++ I+G P ++ +F +I GYV Q+D+ P +T+ E+L F+A LR
Sbjct: 54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110
Query: 767 EISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMD 826
GLS +RKR++IA+ELV+NPS++F+D
Sbjct: 111 ----------------------------------GLSGGERKRVSIALELVSNPSLLFLD 136
Query: 827 EPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
EPTSGLD+ +A VM +R DTGRT++C+IHQPS EIFE FD+LLL+ + GRVIY G
Sbjct: 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 2e-61
Identities = 156/643 (24%), Positives = 284/643 (44%), Gaps = 83/643 (12%)
Query: 671 HEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY---IEGDIKISGYP 727
K +L + G+ PG LT ++G G+G +TL+ +A T G+ +EG I G
Sbjct: 70 DTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIAS-NTDGFHIGVEGVITYDGIT 128
Query: 728 KEQ--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLP----KEISKDQRHEFVEEV- 780
E+ + Y + DVH P +T+ E+L F+A + P +S+++ + + +V
Sbjct: 129 PEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVY 188
Query: 781 MSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
M+ L R+ VG+ G+S +RKR++IA + I D T GLD+ A
Sbjct: 189 MATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEF 248
Query: 841 MRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQ 899
+RA++ + + T + I+Q S + +E FD+++++ G IY G + YF+
Sbjct: 249 IRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGP----ADKAKQYFE 303
Query: 900 GLDGIPLIPSGYNPATWVLEVTTTAVEE----------KLGVDFANVYKNSEQYREVESS 949
+ G P A ++ +T+ A + + +F ++NS +Y ++
Sbjct: 304 KM-GF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLM-- 359
Query: 950 IKSLSVPPDD------------------SEPLKFASTYSQNWLSQFFICLWKQNLVYWRS 991
K + D S+ + +S Y+ ++ Q CL + L +
Sbjct: 360 -KEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418
Query: 992 PQYNAVRLAFTTVAALILGSVFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPI 1051
P + + + ALIL SVF+++ ++ + GAL+ + LF N +S+ I
Sbjct: 419 PSFTLFMVFGNIIMALILSSVFYNL---PKNTSDFYSRGGALFFAILF---NAFSSLLEI 472
Query: 1052 VSI--ERTVFYREKAAGMYSPIPFAAAQGLVEIPYVFVQTLLFGVITYFMVNFERTMRKF 1109
S+ R + + + +Y P A A + EIP+ +++++F +I YFMVNF RT +F
Sbjct: 473 ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRF 532
Query: 1110 LLYLVFTFLTFSYFTFFGMMVVGLTPNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWI 1169
YL+ F+ + + +T A ++ ++ +GF +P+PS+ GW
Sbjct: 533 FFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSK 592
Query: 1170 WFYYISPVAWTL----------RGIISSQL----GDVETMIVEP---TFRGTV------- 1205
W YY++P+A+ R SQ G + + V T G
Sbjct: 593 WIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVD 652
Query: 1206 -KEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNF 1247
+YLK S Y + +++ F+VFFF ++ +F
Sbjct: 653 GDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 7e-61
Identities = 149/588 (25%), Positives = 246/588 (41%), Gaps = 58/588 (9%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELT 63
++G G+GK+TL+ ALA + + SGS+ NG +D +++ SAY+ Q D I LT
Sbjct: 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115
Query: 64 VRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKAS-SVGGKKHSVSTD 122
VRE L F A H+R M + K+ V D
Sbjct: 116 VREHLMFQA-----------------------HLR--------MPRRVTKKEKRERV--D 142
Query: 123 YVLNVLGLDLCSDTVVGSE-MLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTT 181
VL LGL C++T +G ++G+SGG++KR+ ++ LF DE ++GLDS
Sbjct: 143 EVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMA 202
Query: 182 FQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESL 241
+ +V+ ++ Q T + + QP E FELFD ++L+++G + Y G + + FF L
Sbjct: 203 YSVVQVLKGLA-QKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDL 261
Query: 242 GFRLPPRKGVADFLQEV--TSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESS 299
G P ADF +V + + K VS+I + S
Sbjct: 262 GHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSG--- 318
Query: 300 LAVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLT 359
+ Y S W F R L + R R Q L
Sbjct: 319 ---KAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILI 375
Query: 360 CTMFLKTRQHPTDEKKGALYLNCHFFGMV-HMMF-NCFSELPILISRLPVFYKQRDNYFH 417
++L KG +N F + +M F N F + + + LPVF ++ + +
Sbjct: 376 GLIYLGQGLTQ----KGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLY 431
Query: 418 PAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYR 477
A+ +A I +PL II +++ I Y+ +G GA F ++ L+ + +A
Sbjct: 432 RVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGY 491
Query: 478 MMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNE 537
+++ +A T G ++ LL GGF I +SI ++ W+ ++S YG + +N+
Sbjct: 492 LISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQ 551
Query: 538 FTATRWMKKSAIGNNTVGY------NVLHSHSLPTDDYWYWLGVGVML 579
++ NT G +L + S D + L V+L
Sbjct: 552 WSDVD--NIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVIL 597
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 5e-58
Identities = 164/583 (28%), Positives = 293/583 (50%), Gaps = 57/583 (9%)
Query: 646 HPLTMTFHNISYYVDTPQAMRSKGIHEKKL-----------------QLLSNVSGIFSPG 688
+P+T+ F ++ Y V + M++KG + K++ +L+ V+G+ SPG
Sbjct: 36 YPITLKFMDVCYRVKF-ENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPG 94
Query: 689 VLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSP 748
+ A++G SG+GK+TL++ LAGR G G I + + R G+V Q+D+ P
Sbjct: 95 EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYP 153
Query: 749 QVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808
+T+ E+L F + LRLPK ++K ++ E V+S + L + ++G+ G+S +RK
Sbjct: 154 HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERK 213
Query: 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEA 868
R++IA E++ NPS++ +DEPTSGLDA AA ++ + + G+T+V ++HQPS +++
Sbjct: 214 RVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQM 273
Query: 869 FDELLLMKRGGRVIYGGKLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVLEVT-----TT 923
FD +L++ GR ++ GK S M YF+ + P P NPA ++L++ T
Sbjct: 274 FDSVLVLSE-GRCLFFGKG---SDAMA-YFESVGFSPSFP--MNPADFLLDLANGVCQTD 326
Query: 924 AVEEKLGVDFANVYK------NSEQYREVESSIKSLSVPPDDSEPLKFASTYSQ------ 971
V E+ + NV + N+ +V+++I+ P ++ + AST
Sbjct: 327 GVSER---EKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRI 383
Query: 972 ---NWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQRDSSQSLFM 1028
W +QF I L +++L + +N +R+ F +AA +L + W RD L
Sbjct: 384 SISTWFNQFSILL-QRSLKERKHESFNTLRV-FQVIAAALLAGLMWWHSDFRDVQDRL-- 439
Query: 1029 VMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLVEIPYVFVQ 1088
G L+ +F GV + + + ER +F +E+A+GMY+ + A+ + ++P +
Sbjct: 440 --GLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELIL 497
Query: 1089 TLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLAAIISSAFY 1148
+F +TY+M + + FLL L+ G+ + + A+ I +
Sbjct: 498 PTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTM 557
Query: 1149 SLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGD 1191
L GF V + +P W YIS ++ R +I+ Q G+
Sbjct: 558 LAFVLTGGFYVHK--LPSCMAWIKYISTTFYSYRLLINVQYGE 598
|
Length = 659 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 1e-55
Identities = 78/215 (36%), Positives = 129/215 (60%), Gaps = 8/215 (3%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKEQS 731
K ++L++VS G + A++GSSG+GKTTL+D ++GR GG G I +G P++
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77
Query: 732 TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVE-EVMSLVELDSLR 790
F + YV Q+D+ P +T+ E+L ++A LRLP++ S R + VE ++ + L +
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIG 137
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT 850
LV G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ +
Sbjct: 138 GNLVK-----GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR 192
Query: 851 GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
R V+ TIHQP ++F FD +LL+ G ++Y G
Sbjct: 193 NRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 2e-54
Identities = 71/231 (30%), Positives = 100/231 (43%), Gaps = 65/231 (28%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF--QVQRASAYIGQTDNH 58
M L+LG PGSG STLL ALA + +GN++ G I YNG EF + Y+ + D H
Sbjct: 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94
Query: 59 IAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
LTVRETLDFA RC+G + F++ S G +K
Sbjct: 95 FPTLTVRETLDFALRCKG---------------------------NEFVRGISGGERK-- 125
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDS 178
RV+ E +V L D + GLDS
Sbjct: 126 ----------------------------------RVSIAEALVSRASVLCWDNSTRGLDS 151
Query: 179 STTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229
ST +I+KC+R + T ++L Q E ++LFD +++L +G +Y G
Sbjct: 152 STALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 179 bits (457), Expect = 2e-51
Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 7/215 (3%)
Query: 976 QFFICLWKQNLVYWRSPQYN-AVRLAFTTVAALILGSVFWDVGSQRDSSQSLFMVMGALY 1034
Q L ++ L WR P RL + AL+ G+VF ++ D+S G L+
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLLF 57
Query: 1035 ASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLVEIPYVFVQTLLFGV 1094
S LF ++ + P+ ER V RE A+ +YSP + A+ LVE+P +Q ++F +
Sbjct: 58 FSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLL 117
Query: 1095 ITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLAAIISSAFYSLSNLL 1154
I YFMV + +F L+L+ LT + G+ + L P+ A+ I LL
Sbjct: 118 IVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLL 175
Query: 1155 SGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQL 1189
SGF +P S+PGW W YY++P+ + + + +++
Sbjct: 176 SGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 5e-47
Identities = 68/223 (30%), Positives = 108/223 (48%), Gaps = 14/223 (6%)
Query: 667 SKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 726
+K K L VS PG + L+G +GAGKTTL+ +LAG G+I + GY
Sbjct: 11 TKKYGGDK-TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGY 67
Query: 727 P--KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLV 784
KE + R GYV QE P++T+ E+L F A L + ++R +EE++ L
Sbjct: 68 DVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELF 124
Query: 785 ELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 844
L+ + V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +
Sbjct: 125 GLEDKANKKVR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELL 179
Query: 845 RNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887
R G + E E D ++++ G++I G
Sbjct: 180 RELAKEGGVTILLSTHILEEAEELCDRVIILND-GKIIAEGTP 221
|
Length = 293 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (405), Expect = 1e-40
Identities = 139/535 (25%), Positives = 251/535 (46%), Gaps = 57/535 (10%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELT 63
+LGP GSGKSTLL ALAG++ GN N +G+I N + + Q+ + + ++ Q D LT
Sbjct: 99 VLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLT 156
Query: 64 VRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDY 123
VRETL F S K LT+ EK +
Sbjct: 157 VRETLVFC--------SLLRLPKSLTKQEKIL------------------------VAES 184
Query: 124 VLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG-EMIVGPRKTLFMDEISTGLDSSTTF 182
V++ LGL C +T++G+ +RG+SGG++KRV+ EM++ P L +DE ++GLD++ +
Sbjct: 185 VISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP-SLLILDEPTSGLDATAAY 243
Query: 183 QIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESLG 242
++V + + + T + ++ QP +++FD +++LS+G ++ G ++ + +FES+G
Sbjct: 244 RLVLTLGSLAQK-GKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVG 302
Query: 243 FRLPPRKGVADFLQEVTSKKDQAKYWADTSKP---------YVFLPVSEIANAFKSSRFG 293
F ADFL ++ + Q ++ KP Y L ++ A + S F
Sbjct: 303 FSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFP 362
Query: 294 KSLESSLAVPFDKSKSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVA 353
++ V +K H S+ ++S W + + L +H F R QV
Sbjct: 363 QANARF--VGSASTKEHRSSDRI---SISTWFNQFSILLQRSLKERKHESFNTLRVFQVI 417
Query: 354 FVGFLTCTMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQRD 413
L M+ + ++ G L+ F+G +F F+ + + +F K+R
Sbjct: 418 AAALLAGLMWWHSDFRDVQDRLGLLFFISIFWG----VFPSFNSVFVFPQERAIFVKERA 473
Query: 414 NYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMAL 473
+ + ++ +A + +P+ +I ++ + Y+ G P G F +L+L ++
Sbjct: 474 SGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQ 533
Query: 474 GLYRMMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSY 528
GL + + D A+T + +MLA +L GGF + K + S W+ ++S Y
Sbjct: 534 GLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHK--LPSCMAWIKYISTTFY 586
|
Length = 659 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 1e-39
Identities = 72/242 (29%), Positives = 118/242 (48%), Gaps = 47/242 (19%)
Query: 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVL 708
T+++ NIS+ KG + + L + SG+ PG + ++G G+G +TL+ L
Sbjct: 3 TLSWRNISFTT-------GKGRSKIPI--LKDFSGVVKPGEMVLVLGRPGSGCSTLLKAL 53
Query: 709 AGRKTGGY--IEGDIKISGYP--KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRL 764
A R T G +EGDI +G P + + YV +EDVH P +T+ E+L F+
Sbjct: 54 ANR-TEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRC-- 110
Query: 765 PKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIF 824
+ +EFV G+S +RKR++IA LV+ S++
Sbjct: 111 -------KGNEFVR----------------------GISGGERKRVSIAEALVSRASVLC 141
Query: 825 MDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883
D T GLD+ A +++ +R D T +++Q S EI++ FD++L++ GR IY
Sbjct: 142 WDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIY 200
Query: 884 GG 885
G
Sbjct: 201 YG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 143 bits (363), Expect = 1e-38
Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 8/216 (3%)
Query: 325 ELFRTCFAREILLISRHRF-FYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCH 383
+ RE L R ++R Q + + T+F G
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 384 FFGMVHMMFNCFSEL-PILISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWS 442
FF ++ F+ + + P+ I V ++ + + A+ +A ++ +P+S+++A+++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 443 CIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMASIARDMVIANTFGSASMLAILL 502
IVY+ +G RFF ++L+L A GL +A++A A+ G +L +LL
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 503 LGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEF 538
L GF IP +S+ W W+Y+++PL+Y A+ NEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 4e-38
Identities = 66/230 (28%), Positives = 111/230 (48%), Gaps = 39/230 (16%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
+ +LG GSGK+TLL A++G+++G SG I +NG Q Q+ AY+ Q D +
Sbjct: 35 VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLP 94
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
LTVRETL + A + L R + +
Sbjct: 95 GLTVRETLTYTAILR------------LPRKSSDAIRKK--------------------- 121
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG-EMIVGPRKTLFMDEISTGLDSS 179
+ + L + T +G +++G+SGG+++RV+ +++ P K L +DE ++GLDS
Sbjct: 122 ---RVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP-KVLILDEPTSGLDSF 177
Query: 180 TTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229
T +V + + + ++ + QP + F LFD ++LLS G +VY G
Sbjct: 178 TALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 2e-37
Identities = 150/634 (23%), Positives = 281/634 (44%), Gaps = 82/634 (12%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYPKEQST 732
KL +L + SGI P +T L+G +GKTTL+ LAG+ + G+I +GY +
Sbjct: 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV 236
Query: 733 FARISGYVEQEDVHSPQVTIEESLWFSANLR-------LPKEISKDQRHE---------- 775
+ S Y+ Q DVH +T++E+L FSA + L E+++ ++
Sbjct: 237 PRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDL 296
Query: 776 --------------FVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPS 821
+ + ++ LD + +VG G+S Q+KR+T +V
Sbjct: 297 FMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTK 356
Query: 822 IIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880
+FMDE ++GLD+ +++ ++ V T TV+ ++ QP+ E F+ FD+++L+ G+
Sbjct: 357 TLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQ 415
Query: 881 VIYGGKLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVD------FA 934
++Y G ++++F+ G P A ++ EVT+ +E+ D +
Sbjct: 416 IVYQGP----RDHILEFFESC-GFK-CPERKGTADFLQEVTSKKDQEQYWADRNKPYRYI 469
Query: 935 NVYKNSEQYREVESSIK---SLSVPPDDSEPLKFA---STYSQNWLSQFFICLWKQNLVY 988
+V + +E+++ ++ LSVP D S+ K A S YS + C K+
Sbjct: 470 SVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKE---- 525
Query: 989 WRSPQYNAVRLAFTTV----AALILGSVFW--DVGSQRDSSQSLFMVMGALYASCLFLGV 1042
W + NA F TV A I +VF ++ ++ + +L+ +GAL S +
Sbjct: 526 WLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALY--IGALLFSMIINMF 583
Query: 1043 NNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLVEIPYVFVQTLLFGVITYFMVNF 1102
N A + ++ VFY+++ + P F L+ IP ++++++ VITY+ + F
Sbjct: 584 NGFAELALMIQ-RLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGF 642
Query: 1103 ERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLAAIISSAFYSLSNLLSGFLVPQP 1162
+F L+ FL ++ + +A + L LL GF++P+
Sbjct: 643 APEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKG 702
Query: 1163 SIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVEPTFRGTVKEYLKESLG-------- 1214
IP WW W Y++SP+++ + +++ P + + LG
Sbjct: 703 EIPNWWEWAYWVSPLSYGFNALAVNEM-------FAPRWMNKMASDNSTRLGTAVLNIFD 755
Query: 1215 --YGPGMVGASAAMLVAFSVFFFGIFAFSVKFLN 1246
L+ F++ F +F ++ +LN
Sbjct: 756 VFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789
|
Length = 1470 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 1e-31
Identities = 62/212 (29%), Positives = 103/212 (48%), Gaps = 25/212 (11%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQST--- 732
L ++S G +VG +G+GK+TL+ +L G G G++ + G + +
Sbjct: 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKE 72
Query: 733 FARISGYVEQ--EDVHSPQV---TIEESLWFSA-NLRLPKEISKDQRHEFVEEVMSLVEL 786
R G V Q +D Q T+EE + F NL LP+E + +R VEE + LV L
Sbjct: 73 LRRKVGLVFQNPDD----QFFGPTVEEEVAFGLENLGLPEEEIE-ER---VEEALELVGL 124
Query: 787 DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN 846
+ LR F LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 125 EGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK 179
Query: 847 TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
G+T++ H + E D +++++ G
Sbjct: 180 LKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 4e-31
Identities = 69/217 (31%), Positives = 107/217 (49%), Gaps = 20/217 (9%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKE 729
K + L VS PG+ L+G +GAGKTTLM +LA + G I + P++
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQK 69
Query: 730 QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL 789
R GY+ QE P T+ E L + A L K I + V+EV+ LV L
Sbjct: 70 ---LRRRIGYLPQEFGVYPNFTVREFLDYIAWL---KGIPSKEVKARVDEVLELVNLGDR 123
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 849
+GS LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 124 AKKKIGS-----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELG 177
Query: 850 TGRTVVCTIHQPSIEIFEAF-DELLLMKRGGRVIYGG 885
R V+ + H +E E+ +++ ++ G++++ G
Sbjct: 178 EDRIVILSTHI--VEDVESLCNQVAVLN-KGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-29
Identities = 64/217 (29%), Positives = 107/217 (49%), Gaps = 27/217 (12%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 735
L +VS PG A+VG +GAGK+TL+ + G + T G I++ G P E+ R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 736 ISGYVEQE---DVHSPQVTIEE----SLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS 788
I GYV Q D P +++ + L+ + L + +SK + + V+E + V L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLY--GHKGLFRRLSKADKAK-VDEALERVGLSE 124
Query: 789 LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV 848
L +G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 125 LADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR 179
Query: 849 DTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
G T++ H + + E FD +LL+ R V+ G
Sbjct: 180 REGMTILVVTHDLGL-VLEYFDRVLLLNR--TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 3e-29
Identities = 73/273 (26%), Positives = 124/273 (45%), Gaps = 48/273 (17%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF--QVQRASAYIGQTDNH 58
+ LLGP G+GK+TLL LAG L SG I G+++ + +V+R Y+ Q +
Sbjct: 33 IFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSL 89
Query: 59 IAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
ELTVRE L+F AR G + A +ER
Sbjct: 90 YPELTVRENLEFFARLYGLSKEEA----------EER----------------------- 116
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDS 178
+ +L + GL+ ++ V R +SGG K+R++ ++ + L +DE ++GLD
Sbjct: 117 --IEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDP 169
Query: 179 STTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFF 238
+ +I + +R + T L++ E EL D +++L+DG ++ +G E+ E F
Sbjct: 170 ESRREIWELLRELAKEGGVTILLS-THILEEAEELCDRVIILNDGKIIAEGTPEELKEKF 228
Query: 239 ESLGFRL--PPRKGVADFLQEVTSKKDQAKYWA 269
G P R +A+ L+ + K + +
Sbjct: 229 GGKGVIELEPERLELAELLEGLKLVKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-28
Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 20/197 (10%)
Query: 687 PGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFA--RISGYVEQ 742
G + L+G +GAGKTT + +L G R T G I+GY A + GY Q
Sbjct: 27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAARQSLGYCPQ 82
Query: 743 EDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGL 802
D ++T+ E L F A L K + K + E VE ++ ++ L + + L
Sbjct: 83 FDALFDELTVREHLRFYARL---KGLPKSEIKEEVELLLRVLGLTDKANKRART-----L 134
Query: 803 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPS 862
S +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+++ T H S
Sbjct: 135 SGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRSIILTTH--S 191
Query: 863 IEIFEAF-DELLLMKRG 878
++ EA D + +M G
Sbjct: 192 MDEAEALCDRIAIMSDG 208
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 6e-26
Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 23/219 (10%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KEQSTFA 734
+L ++S G +TAL+G +GAGK+TL+ + G G+IKI G P +++
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRL 75
Query: 735 RISGYVEQ---EDVHSPQVTIEE----SLWFSANLRLPKEISKDQRHEFVEEVMSLVELD 787
RI GYV Q D P +T+++ + + KD+ V+E + V ++
Sbjct: 76 RI-GYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGW-FRRLNKKDKEK--VDEALERVGME 130
Query: 788 SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNT 847
LR +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 131 DLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL 185
Query: 848 VDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
G+TV+ H + FD ++ + R +I G
Sbjct: 186 RQEGKTVLMVTHDLG-LVMAYFDRVICLNR--HLIASGP 221
|
Length = 254 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 9e-26
Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 28/219 (12%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPK 728
+K+Q L VS G A+VG SG+GK+TL+++L G R T G + IS +
Sbjct: 14 GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSE 73
Query: 729 EQSTFAR---ISGYVEQEDVHS--PQVTIEESLWFSANLRLPKEIS---KDQRHEFVEEV 780
++ R I G+V Q + P +T E N+ LP ++ K +R E EE+
Sbjct: 74 KELAAFRRRHI-GFVFQS--FNLLPDLTALE------NVELPLLLAGVPKKERRERAEEL 124
Query: 781 MSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
+ V L + LS Q++R+ IA L +P II DEPT LD+ V
Sbjct: 125 LERVGLGDRLNHYPSE-----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 841 MRAVRNTV-DTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
M +R + G T+V H P + E D ++ ++ G
Sbjct: 180 MELLRELNKEAGTTIVVVTHDPELA--EYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 61/216 (28%), Positives = 98/216 (45%), Gaps = 17/216 (7%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KEQST--F 733
+L ++S G +T ++G +G+GK+TL+ LAG G++ + G S
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKEL 74
Query: 734 ARISGYVEQEDVHSPQVTIEESLWFSAN---LRLPKEISKDQRHEFVEEVMSLVELDSLR 790
A+ YV Q +T+ E + + +D+ E VEE + L+ L+ L
Sbjct: 75 AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDE--EIVEEALELLGLEHLA 132
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN-TVD 849
V LS +R+R+ IA L I+ +DEPTS LD V+ +R+ +
Sbjct: 133 DRPVDE-----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187
Query: 850 TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
G TVV +H ++ A D L+L+K G V G
Sbjct: 188 KGLTVVMVLHDLNLAARYA-DHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 5e-24
Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 15/219 (6%)
Query: 671 HEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPK 728
+ + L +VS G L+G +G+GK+TL+ +L G + T G + D + K
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEK 72
Query: 729 EQSTFARISGYVEQE-DVHSPQVTIEESLWFSA-NLRLPKEISKDQRHEFVEEVMSLVEL 786
+ G V Q D T+E+ + F NL LP+E ++R V E + LV L
Sbjct: 73 SLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPRE-EIEER---VAEALELVGL 128
Query: 787 DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN 846
+ L F LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++
Sbjct: 129 EELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKK 183
Query: 847 TV-DTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+ G+T++ H + E D ++++ G + G
Sbjct: 184 LKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADG 221
|
Length = 235 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 2e-23
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 24/213 (11%)
Query: 671 HEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPK 728
++K ++L ++S G + AL G +GAGKTTL +LAG +++ G I ++G P
Sbjct: 9 YKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES----SGSILLNGKPI 64
Query: 729 EQSTFARISGYVEQE-DVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD 787
+ + GYV Q+ D ++ E L KE+ E E V+ ++L
Sbjct: 65 KAKERRKSIGYVMQDVDYQLFTDSVREELLLGL-----KELDAGN--EQAETVLKDLDLY 117
Query: 788 SL--RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVR 845
+L RH P LS Q++RL IA L++ ++ DEPTSGLD + V +R
Sbjct: 118 ALKERH-----P--LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR 170
Query: 846 NTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
G+ V+ H + + D +LL+ G
Sbjct: 171 ELAAQGKAVIVITHDYEF-LAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 2e-23
Identities = 50/213 (23%), Positives = 83/213 (38%), Gaps = 49/213 (23%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQST 732
+L ++S G + ++G +GAGK+TL+ LAG + + G I ++ ++
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKE-- 70
Query: 733 FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHA 792
AR YV Q + L+ L L
Sbjct: 71 LARKIAYVPQ-------------------------------------ALELLGLAHLADR 93
Query: 793 LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TG 851
LS +R+R+ +A L P I+ +DEPTS LD ++ +R G
Sbjct: 94 PFNE-----LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERG 148
Query: 852 RTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+TVV +H ++ D ++L+K G V G
Sbjct: 149 KTVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 4e-23
Identities = 61/207 (29%), Positives = 99/207 (47%), Gaps = 17/207 (8%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQST 732
+ L ++S PG AL+G SG GKTTL+ ++AG R G I ++G P E+
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER-- 71
Query: 733 FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHA 792
R G V Q+ P +T+ E++ F L+L + + K + V E++ LV L+ L +
Sbjct: 72 --RNIGMVFQDYALFPHLTVAENIAFG--LKL-RGVPKAEIRARVRELLELVGLEGLLNR 126
Query: 793 LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNT-VDTG 851
LS Q++R+ +A L PS++ +DEP S LDA+ + ++ + G
Sbjct: 127 YPHE-----LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELG 181
Query: 852 RTVVCTIHQPSIEIFEAFDELLLMKRG 878
T + H E D + +M G
Sbjct: 182 ITTIYVTHDQE-EALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 5e-23
Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 27/227 (11%)
Query: 666 RSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIK 722
+ G+ +K++ L +V+ G A+VG SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 723 ISGYP-KEQSTFARIS-GYVEQEDVHS--PQVTIEESLWFSANLRLP---KEISKDQRHE 775
++ KE + R G+V Q + P +T+ E N+ LP S +R
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLE------NVELPLLIAGKSAGRRKR 120
Query: 776 FVEEVMSLVEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 834
EE++ ++ L D L LS Q++R+ IA L+ NP II DEPT LD+
Sbjct: 121 AAEELLEVLGLEDRLLKKKPSE-----LSGGQQQRVAIARALINNPKIILADEPTGNLDS 175
Query: 835 RAAAIVMRAVRNTV-DTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880
+ A V+ +R + G+T++ H P E+ + D ++ +K G
Sbjct: 176 KTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 8e-23
Identities = 62/235 (26%), Positives = 104/235 (44%), Gaps = 32/235 (13%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKE 729
++K +L +++ PG A+VG +GAGKTTL+++L Y +G I I G
Sbjct: 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLL----MRFYDPQKGQILIDGIDIR 68
Query: 730 QSTFARIS---GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL 786
+ + G V Q+ TI E N+RL + + D E V E
Sbjct: 69 DISRKSLRSMIGVVLQDTFLFSG-TIME------NIRLGRPNATD---EEVIEAAKEAGA 118
Query: 787 DSLRHAL------VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
L V LS +R+ L IA ++ +P I+ +DE TS +D ++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 841 MRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMI 895
A+ + GRT + H+ S I A D++L++ G++I + G H +++
Sbjct: 179 QEALEKLMK-GRTSIIIAHRLST-IKNA-DKILVLDD-GKII---EEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 9e-23
Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 49/216 (22%)
Query: 667 SKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKI 723
SK +K +L++VS G + AL+G SG+GK+TL+ +AG G I +
Sbjct: 7 SKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDL 64
Query: 724 SGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSL 783
+ E R G V Q+ P +T+ E++
Sbjct: 65 TDLEDELPPLRRRIGMVFQDFALFPHLTVLENI--------------------------- 97
Query: 784 VELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 843
+ GLS Q++R+ +A L +P ++ +DEPTS LD V
Sbjct: 98 ---------------ALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRAL 142
Query: 844 VRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRG 878
+++ G TVV H E D +++++ G
Sbjct: 143 LKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 1e-22
Identities = 53/206 (25%), Positives = 76/206 (36%), Gaps = 65/206 (31%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFA- 734
L NVS G + ALVG +G+GK+TL+ +AG G+I I G +
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 735 --RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHA 792
R GYV Q +S QR V L
Sbjct: 71 LRRRIGYVPQ-------------------------LSGGQR--------QRVAL------ 91
Query: 793 LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGR 852
A L+ NP ++ +DEPTSGLD + ++ +R + GR
Sbjct: 92 --------------------ARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGR 131
Query: 853 TVVCTIHQPSIEIFEAFDELLLMKRG 878
TV+ H P A D ++++K G
Sbjct: 132 TVIIVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 94.4 bits (236), Expect = 4e-22
Identities = 51/210 (24%), Positives = 84/210 (40%), Gaps = 53/210 (25%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--K 728
K L ++S G + L+G +GAGKTTL+ ++ G + G+IK+ G K
Sbjct: 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKK 66
Query: 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS 788
E R GY+ +E +T+ E NL+L
Sbjct: 67 EPEEVKRRIGYLPEEPSLYENLTVRE------NLKL------------------------ 96
Query: 789 LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV 848
S G ++RL +A L+ +P ++ +DEPTSGLD + +R
Sbjct: 97 ----------SGG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142
Query: 849 DTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
G+T++ + H E D + ++ G
Sbjct: 143 KEGKTILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 6e-22
Identities = 33/64 (51%), Positives = 42/64 (65%)
Query: 543 WMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLRKS 602
W K + N T+G VL S L T+ YWYW+GVG +L + LFN + TLAL YLNPL KS
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 603 QVVI 606
Q ++
Sbjct: 61 QAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-21
Identities = 70/269 (26%), Positives = 116/269 (43%), Gaps = 53/269 (19%)
Query: 634 EDGKKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTAL 693
++G K + +P + F N+S+ +L ++S PG A+
Sbjct: 456 QEGDKTLIHLPKLQGEIEFENVSFRYGPDDPP-----------VLEDLSLEIPPGEKVAI 504
Query: 694 VGSSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKEQ---STFARISGYVEQEDVHSP 748
VG SG+GK+TL+ +L G Y +G I + G ++ R GYV Q+
Sbjct: 505 VGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF--- 557
Query: 749 QVTIEESLWFSA---NLRLPKEISKDQR----------HEFVEEVMSLVELDSLRHALVG 795
L+ + N+ L + D+ HEF+E L VG
Sbjct: 558 -------LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIEN------LPMGYDTPVG 604
Query: 796 SPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVV 855
G+ LS QR+RL +A L++ P I+ +DE TS LD AI+++ + + GRTV+
Sbjct: 605 EGGA-NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVI 662
Query: 856 CTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
H+ S + D ++++ +G V G
Sbjct: 663 IIAHRLS--TIRSADRIIVLDQGKIVEQG 689
|
Length = 709 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 3e-21
Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
+T ++GP G+GKSTLL ALAG+ G L SG + NG LD+ ++ Y+ Q D
Sbjct: 37 LTAIMGPSGAGKSTLLNALAGRRTG-LGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHP 95
Query: 61 ELTVRETLDFAARCQG 76
LTVRETL FAA+ +G
Sbjct: 96 TLTVRETLMFAAKLRG 111
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 6e-21
Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 22/208 (10%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFA 734
+ ++S G L+G SG GKTTL+ ++AG + + G I I+ P E+
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK---- 76
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
R G V Q P +T+EE++ F L++ K++ K + VEE + LV L+
Sbjct: 77 RPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFADRKP 134
Query: 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN-TVDTGRT 853
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++ + G T
Sbjct: 135 HQ-----LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT 189
Query: 854 VVCTIHQPSIEIFEAF---DELLLMKRG 878
V H EA D + +M G
Sbjct: 190 FVYVTHDQE----EALAMSDRIAVMNDG 213
|
Length = 352 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 7e-21
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 18/189 (9%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 735
L ++ G + AL+G++GAGK+TL+ L G R G + D + Y ++ R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 736 IS-GYVEQ---EDVHSPQVTIEESLWFSA-NLRLPKEISKDQRHEFVEEVMSLVELDSLR 790
G V Q + + + +++ + F NL L S+ + V E ++ V LR
Sbjct: 68 QRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGL----SEAEVERRVREALTAVGASGLR 121
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT 850
LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 122 ERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 851 GRTVVCTIH 859
G TVV + H
Sbjct: 177 GMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 1e-20
Identities = 38/88 (43%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Query: 143 LRGVSGGQKKRVTTG-EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALM 201
LRG+SGG++KRV+ E++ P LF+DE ++GLDSS+ Q++ +R T +
Sbjct: 109 LRGLSGGERKRVSIALELVSNPS-LLFLDEPTSGLDSSSALQVMSLLRRLA-DTGRTIIC 166
Query: 202 ALLQPPPETFELFDDLVLLSDGYLVYQG 229
++ QP E FELFD L+LLS G ++Y G
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 1e-20
Identities = 66/212 (31%), Positives = 99/212 (46%), Gaps = 34/212 (16%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP----KEQSTF 733
L VS PG ALVG SGAGK+TL+++L G EG I ++G P S
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADADADSWR 395
Query: 734 ARISGYVEQEDVHSPQV---TIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR 790
+I +V Q P + TI E N+RL + D + E + LD
Sbjct: 396 DQI-AWVPQ----HPFLFAGTIAE------NIRLAR---PDASDAEIREALERAGLDEFV 441
Query: 791 HAL-------VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 843
AL +G G+ GLS Q +RL +A + + ++ +DEPT+ LDA A V+ A
Sbjct: 442 AALPQGLDTPIGEGGA-GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEA 500
Query: 844 VRNTVDTGRTVVCTIHQPSIEIFEAFDELLLM 875
+R + GRTV+ H+ + D ++++
Sbjct: 501 LRA-LAQGRTVLLVTHRL--ALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 21/216 (9%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQ 730
K ++L ++S G + +G +GAGKTT M ++ G + G I Y K
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNI 68
Query: 731 STFARISGYVEQEDVHSPQVTIEESLWFSANL-RLPKEISKDQRHEFVEEVMSLVELDSL 789
RI +E + P +T E+L A L + K+ ++EV+ +V L
Sbjct: 69 EALRRIGALIEAPGFY-PNLTARENLRLLARLLGIRKKR--------IDEVLDVVGLKDS 119
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 849
V G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D
Sbjct: 120 AKKKVK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD 174
Query: 850 TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
G TV+ + H S EI + D + ++ G++I G
Sbjct: 175 QGITVLISSHLLS-EIQKVADRIGII-NKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 2e-20
Identities = 59/235 (25%), Positives = 111/235 (47%), Gaps = 29/235 (12%)
Query: 671 HEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE- 729
+ LS+++ G LTALVG+SGAGK+TL+++L G +G+I+++G
Sbjct: 330 YPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRD 387
Query: 730 --QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD 787
+ + +V Q + + TI E N+ L + + D+ + + L
Sbjct: 388 LSPEAWRKQISWVSQ-NPYLFAGTIRE------NILLARPDASDEE---IIAALDQAGLL 437
Query: 788 SL------RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 841
++G G+ GLS Q +RL +A L++ S++ +DEPT+ LDA I++
Sbjct: 438 EFVPKPDGLDTVIGEGGA-GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIIL 496
Query: 842 RAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMID 896
+A++ +TV+ H+ E D ++++ GR++ G H ++
Sbjct: 497 QALQELAK-QKTVLVITHRL--EDAADADRIVVLDN-GRLVEQGT---HEELSEK 544
|
Length = 559 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 89.0 bits (222), Expect = 3e-20
Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 67/233 (28%)
Query: 650 MTFHNISY-YVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVL 708
+ F N+S+ Y P+ +L +VS PG A+VG SG+GK+TL+ +L
Sbjct: 1 IEFKNVSFSYPGRPK------------PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLL 48
Query: 709 AG--RKTGGYIE-GDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLP 765
T G I + + E + + YV Q+ P + FS
Sbjct: 49 LRLYDPTSGEILIDGVDLRDLDLE--SLRKNIAYVPQD----PFL-------FS------ 89
Query: 766 KEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFM 825
++R + LS QR+R+ IA L+ +P I+ +
Sbjct: 90 ---------------------GTIRENI--------LSGGQRQRIAIARALLRDPPILIL 120
Query: 826 DEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
DE TS LD A+++ A+R + G+TV+ H+ S D ++++ G
Sbjct: 121 DEATSALDPETEALILEALRA-LAKGKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 2e-19
Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 12/190 (6%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRK--TGGYIE-GDIKISGYPKEQSTFA 734
L ++ S G LVG SGAGK+TL+ ++ + T G I +S +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 735 RIS-GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHAL 793
R G V Q+ P + E N+ E++ E + V + +EL L H
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYE------NVAFALEVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRT 853
P LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALPA--ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 854 VVCTIHQPSI 863
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 2e-19
Identities = 62/217 (28%), Positives = 105/217 (48%), Gaps = 18/217 (8%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQ 730
K +Q + VS PG +T L+G +GAGKTT + +LAG G+ + G+ +
Sbjct: 16 KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----VDGFDVVK 71
Query: 731 STFA--RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS 788
R G+V ++T E+L + A L + D+ +EE+ + ++
Sbjct: 72 EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEE 128
Query: 789 LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV 848
L VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R
Sbjct: 129 LLDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR 183
Query: 849 DTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
G+ ++ + H E+ D ++++ R GRV+Y G
Sbjct: 184 ALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 4e-19
Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 33/220 (15%)
Query: 667 SKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIK 722
SK +K +L +++ G + A++G SG+GK+TL++++ + G Y+ G
Sbjct: 5 SKKFGDK--VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQET 62
Query: 723 ISGYPKEQSTFARIS-GYVEQ-----EDVHSPQVTIEESLWFSANLRLP---KEISKDQR 773
K+ S F R GY+ Q E+ T+EE NL L K++SK ++
Sbjct: 63 PPLNSKKASKFRREKLGYLFQNFALIENE-----TVEE------NLDLGLKYKKLSKKEK 111
Query: 774 HEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
E +E + V L+ + + LS +++R+ +A ++ P +I DEPT LD
Sbjct: 112 REKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKPPPLILADEPTGSLD 166
Query: 834 ARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELL 873
+ V+ + D G+T++ H P E+ + D ++
Sbjct: 167 PKNRDEVLDLLLELNDEGKTIIIVTHDP--EVAKQADRVI 204
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 4e-19
Identities = 55/194 (28%), Positives = 84/194 (43%), Gaps = 19/194 (9%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFA 734
L S +S + G L G +G+GKTTL+ ++AG G IK+ G + A
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA----AGTIKLDGGDIDDPDVA 72
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
Y+ + P +T+ E+L F A + + V L L H
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFL-------GGEELDIAAALEAVGLAPLAHLPF 125
Query: 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTV 854
G LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G V
Sbjct: 126 GY-----LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIV 180
Query: 855 VCTIHQPSIEIFEA 868
+ H P + + A
Sbjct: 181 IAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 4e-19
Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 22/179 (12%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KEQSTFARISGYVEQE 743
G + +G +GAGKTT + +L R T G +++GY +E R G V Q
Sbjct: 19 GEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVREPRKVRRSIGIVPQ- 73
Query: 744 DVHSPQVTIEESLWFSANLRLPKE---ISKDQRHEFVEEVMSLVELDSLRHALVGSPGSF 800
+++E L NL + + KD+ E EE++ L EL VG
Sbjct: 74 -----YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG----- 123
Query: 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 859
S R+RL IA L+ P ++F+DEPT+GLD R + +R + G T++ T H
Sbjct: 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 87.1 bits (217), Expect = 5e-19
Identities = 68/243 (27%), Positives = 110/243 (45%), Gaps = 40/243 (16%)
Query: 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLA 709
+ N+S + L ++S G ALVG SG GK+TL+ ++A
Sbjct: 1 LEVRNVSKTYGGGGG---------AVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIA 51
Query: 710 G--RKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKE 767
G R T G++ + G P R GYV Q+D P +T+ + N+ L E
Sbjct: 52 GLERPT----SGEVLVDGEPVTGPGPDR--GYVFQQDALLPWLTVLD------NVALGLE 99
Query: 768 I---SKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIF 824
+ K + E EE++ LV L +A P LS R+R+ +A L +P ++
Sbjct: 100 LQGVPKAEARERAEELLELVGLSGFENAY---PHQ--LSGGMRQRVALARALAVDPDVLL 154
Query: 825 MDEPTSGLDARAAAIVMRAVRNTV-DTGRTVVCTIHQPSIEIFEAF---DELLLM-KRGG 879
+DEP S LDA + + + +TG+TV+ H I+ EA D ++++ R G
Sbjct: 155 LDEPFSALDALTREQLQEELLDIWRETGKTVLLVTH--DID--EAVFLADRVVVLSARPG 210
Query: 880 RVI 882
R++
Sbjct: 211 RIV 213
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 7e-19
Identities = 63/214 (29%), Positives = 108/214 (50%), Gaps = 22/214 (10%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKEQS---T 732
L +VS PG AL+G +GAGK+TL +L T Y+ EG I ++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 733 FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHA 792
AR+ G V Q+ +++ ++L + A L +S+ + + E+++ + L
Sbjct: 73 LARL-GVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARARIAELLARLGLAERADD 128
Query: 793 LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN-TVDTG 851
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVRE-----LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 852 RTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
+V+ H ++ EA D L+++ R GRV+ G
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHR-GRVLADG 214
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 2e-18
Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 32/196 (16%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKEQS-- 731
L +VS PG + L+G +GAGKTTL ++++G R T G +G+ I+G P +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE-DITGLPPHEIAR 74
Query: 732 -----TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEIS----KDQRHEFVEEVMS 782
TF + P++T+ E++ +A R + + + E E
Sbjct: 75 LGIGRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARERAEE 126
Query: 783 L---VELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 839
L V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 127 LLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEE 181
Query: 840 VMRAVRNTVDTGRTVV 855
+ +R + G TV+
Sbjct: 182 LAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 31/226 (13%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY------PKEQS 731
L +VS +PG AL+G SGAGK+TL+ L G G + I G K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT--SGSVLIDGTDINKLKGKALR 74
Query: 732 TFARISGYVEQEDVHSPQVTIEE----------SLWFSANLRLPKEISKDQRHEFVEEVM 781
R G + Q+ ++++ E S W S PKE +++ +
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE---EKQRAL--AAL 129
Query: 782 SLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 841
V L + LS Q++R+ IA L+ P +I DEP + LD ++ VM
Sbjct: 130 ERVGLLDKAYQRADQ-----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVM 184
Query: 842 RAVRN-TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
++ + G TV+ ++HQ + E D ++ +K GR+++ G
Sbjct: 185 DLLKRINREEGITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 3e-18
Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 24/211 (11%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 735
L +++ G A++G SG GK+TL+ ++AG + T G + D + P
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD----- 73
Query: 736 ISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVG 795
GYV QED P +T+ +++ LR SK + E +E++ LV L
Sbjct: 74 -IGYVFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDKY-- 127
Query: 796 SPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV-DTGRTV 854
P LS R+R+ IA L P ++ +DEP LDA + + +T +TV
Sbjct: 128 -PHQ--LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTV 184
Query: 855 VCTIHQPSIEIFEAF---DELLLMKRGGRVI 882
+ H ++ EA D ++++ I
Sbjct: 185 LLVTH--DVD--EAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 3e-18
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 18/222 (8%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 735
L ++S G L AL+G SGAGK+TL+ ++AG G I + ++ + R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 736 ISGYVEQEDVHSPQVTIEESLWFSANLRL--PKEISKDQRHEFVEEVMSLVELDSL--RH 791
G+V Q P +T+ +++ F +R P E R VEE++ LV+L+ L R+
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR---VEELLRLVQLEGLADRY 134
Query: 792 ALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-T 850
LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 135 PA-------QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRL 187
Query: 851 GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQ 892
G T V H E E D ++++ +G G V+
Sbjct: 188 GVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYDH 228
|
Length = 345 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 3e-18
Identities = 67/275 (24%), Positives = 116/275 (42%), Gaps = 34/275 (12%)
Query: 671 HEKKLQLLSNVSGIFS--PGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIK---- 722
++ + +VS F PG + +VG SG+GK+TL L G + G G++
Sbjct: 18 DGGRVPAVRDVS--FEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 723 -ISGYPKEQST--FARISGYVEQEDVHS--PQVTIEESLWFSANLRLPKEISKDQRHEFV 777
+ G + + + + Q+ + S P +TI + + LRL + S+ + +
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQI--REALRLHGKGSRAEARKRA 133
Query: 778 EEVMSLVEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 836
E++ V L D R P LS R+R+ IA+ L P ++ DEPT+ LD
Sbjct: 134 VELLEQVGLPDPERRDRY--P--HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT 189
Query: 837 AAIVMRAVRN-TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMI 895
A ++ +++ + G V+ H + + E D +++M +G V G + S
Sbjct: 190 QAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKGEIVETGPTEEILSNPQH 248
Query: 896 DYFQGL----------DGIPLIPSGYNPATWVLEV 920
Y +GL I L G A +L V
Sbjct: 249 PYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSV 283
|
Length = 539 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 4e-18
Identities = 61/211 (28%), Positives = 97/211 (45%), Gaps = 19/211 (9%)
Query: 680 NVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KEQSTFAR 735
VS G + L+G +GAGKTT + +L + T G ++G+ +E R
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREVRR 73
Query: 736 ISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVG 795
G V Q+ ++T E+L+ A L + +R E ++E++ V L LV
Sbjct: 74 RIGIVFQDLSVDDELTGWENLYIHARL---YGVPGAERRERIDELLDFVGLLEAADRLVK 130
Query: 796 SPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTV 854
+ S R+RL IA LV P ++F+DEPT GLD + A V + + G T+
Sbjct: 131 T-----YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTI 185
Query: 855 VCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
+ T H E + D + ++ GR+I G
Sbjct: 186 LLTTHYME-EAEQLCDRVAIIDH-GRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 5e-18
Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 31/220 (14%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKEQ---ST 732
L NVS G A++G G+GK+TL+ +LAG Y G + + G Q +
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL----YKPTSGSVLLDGTDIRQLDPAD 75
Query: 733 FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL--R 790
R GYV Q DV T+ + N+ L ++ D+R + L + +
Sbjct: 76 LRRNIGYVPQ-DVTLFYGTLRD------NITLGAPLADDER---ILRAAELAGVTDFVNK 125
Query: 791 HA-----LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVR 845
H +G G GLS QR+ + +A L+ +P I+ +DEPTS +D + + +R
Sbjct: 126 HPNGLDLQIGERG-RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184
Query: 846 NTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
+ +T++ H+PS + + D +++M GR++ G
Sbjct: 185 QLL-GDKTLIIITHRPS--LLDLVDRIIVM-DSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 7e-18
Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 28/210 (13%)
Query: 687 PGVLTALVGSSGAGKTTLMDVLAG--RKTGGYI--------EGDIKISGYPKEQSTFARI 736
+T + G+SGAGK+TL+ +AG + GG I + KI+ P++ R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ-----RK 76
Query: 737 SGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
G V Q+ P + + E+L F K + V+E++ L+ LD L +
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFGL-----KRKRNREDRISVDELLDLLGLDHLLNRYPA- 130
Query: 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV-DTGRTVV 855
LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+
Sbjct: 131 ----QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVI 186
Query: 856 CTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
H S E D +++M GR+ Y G
Sbjct: 187 FVTHDLS-EAEYLADRIVVM-EDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 1e-17
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 24/218 (11%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---- 727
+ ++L VS G + A+VGSSG+GK+TL+ +L G G++ +G
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKL 72
Query: 728 --KEQSTFARIS-GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLV 784
E++ G++ Q P T E N+ +P I K E E ++
Sbjct: 73 SSNERAKLRNKKLGFIYQFHHLLPDFTALE------NVAMPLLIGKKSVKEAKERAYEML 126
Query: 785 ELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---M 841
E L H + P LS +R+R+ IA LV PS++ DEPT LD A I+ M
Sbjct: 127 EKVGLEHRINHRPSE--LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLM 184
Query: 842 RAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879
+ ++T VV H E+ + D +L MK G
Sbjct: 185 LELNRELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 1e-17
Identities = 65/240 (27%), Positives = 103/240 (42%), Gaps = 51/240 (21%)
Query: 667 SKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIKI 723
SK KK + +V+ G L+G SG+GKTT + + IE G+I I
Sbjct: 8 SKRYGNKKA--VDDVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILI 60
Query: 724 SGYPKEQST----FARIS-GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVE 778
G ++ S R GYV Q+ P +T+ E++ L K++ + +
Sbjct: 61 DG--EDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKL---LGWDKERIKKRAD 115
Query: 779 EVMSLVELDSLRHALVGSPGSFG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 832
E++ LV LD P + LS Q++R+ +A L A+P I+ MDEP L
Sbjct: 116 ELLDLVGLD---------PSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGAL 166
Query: 833 DARAAAIVMRAVRNTV-----DTGRTVVCTIHQPSIEIFEAF---DELLLMKRGGRVIYG 884
D I + ++ + + G+T+V H +I EA D + +M G V Y
Sbjct: 167 D----PITRKQLQEEIKELQKELGKTIVFVTH----DIDEALKLADRIAVMDAGEIVQYD 218
|
Length = 309 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 1e-17
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 20/217 (9%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYP--K 728
K+Q + +VS G +T L+G +GAGKTTL+ ++A + G + I G +
Sbjct: 14 KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT-----LLIPDSGKVTIDGVDTVR 68
Query: 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS 788
+ S R G + E ++T E+L + A L +S+ + + E+ ++L
Sbjct: 69 DPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLE 125
Query: 789 LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV 848
VG ST ++++ IA LV +PSI+ +DEPTSGLD R ++
Sbjct: 126 YLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK 180
Query: 849 DTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
+ GR V+ + H ++ EA + +++ G V+ G
Sbjct: 181 NEGRAVIFSSH--IMQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 58/215 (26%), Positives = 106/215 (49%), Gaps = 24/215 (11%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI----EGDIKISGYPKEQS 731
L ++S G + L+G +GAGKTT + ++ G I G++ G P + +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIA 67
Query: 732 TFARISGYVEQEDVHSPQVTIEESLWFSANLR-LPKEISKDQRHEFVEEVMSLVELDSLR 790
RI GY+ +E P++ + + L + A L+ L KE + R ++E + +EL
Sbjct: 68 ARNRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKE---EARRR-IDEWLERLELSEYA 122
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT 850
+ V LS ++++ ++ +P ++ +DEP SGLD ++ +R
Sbjct: 123 NKRVEE-----LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA 177
Query: 851 GRTVVCTIHQPSIEIFEAF-DELLLMKRGGRVIYG 884
G+TV+ + HQ +E+ E D +LL+ +G V+YG
Sbjct: 178 GKTVILSTHQ--MELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 2e-17
Identities = 61/197 (30%), Positives = 88/197 (44%), Gaps = 30/197 (15%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKEQSTFA 734
L VS PG A++G SG+GK+TL+ LAG G + +S Q
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLD--QDEVR 408
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVE-------LD 787
R Q D H T+ E NLRL + + D EE+ + +E L
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRE------NLRLARPDATD------EELWAALERVGLADWLR 455
Query: 788 SLRHAL---VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 844
+L L +G G+ LS +R+RL +A L+A+ I+ +DEPT LDA A ++ +
Sbjct: 456 ALPDGLDTVLGEGGAR-LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL 514
Query: 845 RNTVDTGRTVVCTIHQP 861
+GRTVV H
Sbjct: 515 LA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 4e-17
Identities = 60/217 (27%), Positives = 94/217 (43%), Gaps = 27/217 (12%)
Query: 676 QLLSNVSGIFS--PGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKE 729
+ L +VS FS G LVG SG+GK+TL + G + T G +G + +
Sbjct: 19 KALDDVS--FSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRL 76
Query: 730 QSTFARISGYVEQEDVHS--PQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD 787
+ + V Q+ + S P++TI E + + K K+ R E V ++ V L
Sbjct: 77 RKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHG-KLSKKEARKEAVLLLLVGVGLP 135
Query: 788 SLR-----HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 842
H L G G QR+R+ IA L NP ++ DEPTS LD A ++
Sbjct: 136 EEVLNRYPHELSG-----G----QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILD 186
Query: 843 AVRN-TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
++ + G T++ H + A D + +M G
Sbjct: 187 LLKKLQEELGLTLLFITHDLGVVAKIA-DRVAVMYAG 222
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 17/221 (7%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP------KE 729
Q L N++ +PG A++G SGAGK+TL+ + G I + G K+
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKK 73
Query: 730 QSTFARISGYVEQE-DVHSPQVTIEESL--WFSANLRLPKEISKDQRHEFVEEVMSLVEL 786
R G + Q ++ +E L + + + + +L +
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV 133
Query: 787 DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN 846
A + LS Q++R+ IA L P +I DEP + LD + + VM ++
Sbjct: 134 GLADKAYQRADQ---LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190
Query: 847 -TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
+ G TV+ +HQ +++ + + + ++ + G +++ G
Sbjct: 191 INKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 5e-17
Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 33/235 (14%)
Query: 670 IHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGY 726
+ Q L +V+ + G + A++G SGAGK+TL+ L G T G I + I+
Sbjct: 12 TYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKL 71
Query: 727 PKEQSTFARIS-GYVEQEDVHSPQVTIEE----------SLWFSANLRLPKEISKDQRHE 775
++ R G + Q+ P++++ E S W S L + K Q +
Sbjct: 72 KGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSL-FGLFSKEDKAQALD 130
Query: 776 FVEEVMSLVELDSLRHAL--VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
+L + L A + LS Q++R+ IA LV P II DEP + LD
Sbjct: 131 ------ALERVGILDKAYQRAST-----LSGGQQQRVAIARALVQQPKIILADEPVASLD 179
Query: 834 ARAAAIVMRAVR--NTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
+A VM ++ N D G TV+ +HQ +++ + + + ++ + GR+++ G
Sbjct: 180 PESAKKVMDILKDINQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 6e-17
Identities = 64/220 (29%), Positives = 103/220 (46%), Gaps = 22/220 (10%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKE 729
K ++++ VS G + L+G +GAGKTT ++ G + G I I+ P
Sbjct: 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH 70
Query: 730 QSTFARIS-GYVEQEDVHSPQVTIEESLWFSANLRLPKEI---SKDQRHEFVEEVMSLVE 785
+ AR+ GY+ QE ++T+EE N+ EI SK +R E +EE++
Sbjct: 71 KR--ARLGIGYLPQEASIFRKLTVEE------NILAVLEIRGLSKKEREEKLEELLEEFH 122
Query: 786 LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVR 845
+ LR S S LS +R+R+ IA L NP + +DEP +G+D A + + ++
Sbjct: 123 ITHLRK----SKASS-LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIK 177
Query: 846 NTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
D G V+ T H E D ++ G+V+ G
Sbjct: 178 ILKDRGIGVLITDHNVR-ETLSITDRAYII-YEGKVLAEG 215
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 6e-17
Identities = 71/232 (30%), Positives = 106/232 (45%), Gaps = 53/232 (22%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYP-KEQST 732
++N++ + G L+G SG+GKTT M + IE G+I I G +EQ
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 733 FA--RISGYVEQEDVHSPQVTIEESLWFSANLRL-PK--EISKDQRHEFVEEVMSLVELD 787
R GYV Q+ P +T+EE N+ L PK + K++ E +E+++LV LD
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEE------NIALVPKLLKWPKEKIRERADELLALVGLD 124
Query: 788 SLRHALVGSPGSFG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 841
P F LS Q++R+ +A L A+P ++ MDEP LD +
Sbjct: 125 ---------PAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----IT 170
Query: 842 RA------VRNTVDTGRTVVCTIHQPSIEIFEAF---DELLLMKRGGRVIYG 884
R R + G+T+V H +I EAF D + +MK G V G
Sbjct: 171 RDQLQEEFKRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNGEIVQVG 218
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 7e-17
Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 32/189 (16%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGG--YIEGDIKIS 724
L ++S G +TAL+G SG GK+TL+ D++ G G ++G I
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGK-DIY 70
Query: 725 GYPKEQSTFARISGYVEQEDVHSPQV---TIEESLWFSANLRLPKEISKDQRHEFVEEVM 781
+ R G V Q+ P +I +++ + LRL K++ E VEE +
Sbjct: 71 DLDVDVLELRRRVGMVFQK----PNPFPGSIYDNV--AYGLRLHGIKLKEELDERVEEAL 124
Query: 782 SLVEL-----DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 836
L D L HAL GLS Q++RL +A L P ++ +DEPTS LD +
Sbjct: 125 RKAALWDEVKDRL-HAL-------GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPIS 176
Query: 837 AAIVMRAVR 845
A + +
Sbjct: 177 TAKIEELIA 185
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 7e-17
Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 19/210 (9%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
L +VS + G L ++G SG GKTTL++++AG T G I+++G E R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 737 SGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
G V Q + P + + +++ F LR I K QR E ++++LV L+ H +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-- 130
Query: 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA----RAAAIVMRAVRNTVDTGR 852
+ LS R+R+ IA L P ++ +DEP LDA + +++ + +TG+
Sbjct: 131 ---WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQ---ETGK 184
Query: 853 TVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882
V+ H +F A ++L GRV+
Sbjct: 185 QVLLITHDIEEALFLATRLVVLSPGPGRVV 214
|
Length = 259 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 8e-17
Identities = 79/256 (30%), Positives = 123/256 (48%), Gaps = 32/256 (12%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STF 733
LL +S F G +T L+G +G+GK+TL+ +L GR EG+I + P E F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAF 83
Query: 734 ARISGYVEQEDVHSPQVTIEESL------WFSANLRLPKEISKDQRHEFVEEVMSLVELD 787
AR Y+ Q+ + +T+ E + W A R E VEE +SLV L
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAA-----DREKVEEAISLVGLK 138
Query: 788 SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV-RN 846
L H LV S LS +R+R IA+ + + + +DEPTS LD V+ V R
Sbjct: 139 PLAHRLVDS-----LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193
Query: 847 TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM-IDYFQGLDGIP 905
+ + G TV+ +H I + + + L+ RGG +I G +++M + + + GIP
Sbjct: 194 SQERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT---PAELMRGETLEQIYGIP 248
Query: 906 L----IPSGYNPATWV 917
+ P+G P ++V
Sbjct: 249 MGILPHPAGAAPVSFV 264
|
Length = 265 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 1e-16
Identities = 58/196 (29%), Positives = 87/196 (44%), Gaps = 17/196 (8%)
Query: 654 NISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--R 711
N+S + + + + E K + +VS G LVG SG+GK+TL +LAG
Sbjct: 285 NLSKRYGSRKGLFVRERGEVKA--VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP 342
Query: 712 KTGGYIE---GDIKISGYPKEQSTFARISGYVEQEDVHS--PQVTIEESLWFSANLRLPK 766
+ G I D+ ++G E R V Q+ S P++T+ + L LR+
Sbjct: 343 PSSGSIIFDGQDLDLTG--GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHG 398
Query: 767 EISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMD 826
S +R V E++ LV L L P S QR+R+ IA L P ++ +D
Sbjct: 399 GGSGAERRARVAELLELVGLP--PEFLDRYPHEL--SGGQRQRVAIARALALEPKLLILD 454
Query: 827 EPTSGLDARAAAIVMR 842
EP S LD A V+
Sbjct: 455 EPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-16
Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 19/216 (8%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTF 733
++ V PG LT L+G +G+GK+TL+ +LAG R G ++ + + G +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR-- 73
Query: 734 ARISGYVEQEDVHSPQVTIEESLWFSANLRLPKE----ISKDQRHEFVEEVMSLVELDSL 789
AR VEQ+ + +T+ + + R+P V+ ++ EL L
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALG---RIPHRSLWAGDSPHDAAVVDRALARTELSHL 130
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 849
+ + LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 131 ADRDMST-----LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA 185
Query: 850 TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
TG TVV +H ++ ++ + +++ GGRV+ G
Sbjct: 186 TGVTVVAALHDLNLAA--SYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 80.2 bits (199), Expect = 1e-16
Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 19/217 (8%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEG-DIKISGYPKEQ 730
+L V G + A++G SG+GK+TL+ ++ G R G I+G DI E
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDI-SGLSEAEL 72
Query: 731 STFARISGYVEQEDVHSPQVTIEE--SLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS 788
R G + Q +T+ E + + RL +E ++ V E + V L
Sbjct: 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI----VLEKLEAVGLRG 128
Query: 789 LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV 848
P LS +KR+ +A L +P ++ DEPT+GLD A+ ++ +R+
Sbjct: 129 AEDLY---PAE--LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLK 183
Query: 849 DT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
G T + H F D + ++ G V G
Sbjct: 184 KELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEG 219
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 1e-16
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFA 734
L S++S + G + G +GAGKTTL+ +LAG R G + + + ++
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVRESYH 74
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
+ Y+ + ++T E NL + + E ++ V L L V
Sbjct: 75 QALLYLGHQPGIKTELTALE------NLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPV 128
Query: 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTV 854
G LS Q++R+ +A ++ + +DEP + LD A++ + G V
Sbjct: 129 GQ-----LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIV 183
Query: 855 VCTIHQP 861
+ T HQP
Sbjct: 184 LLTTHQP 190
|
Length = 209 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 2e-16
Identities = 59/214 (27%), Positives = 96/214 (44%), Gaps = 23/214 (10%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQST--- 732
L VS PG + AL+G +GAGK+TLM +L+G G+I I G P S+
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKPVAFSSPRD 79
Query: 733 -FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKE----ISKDQRHEFVEEVMSLVELD 787
A V QE P +++ E+++ R P I + E+++ + LD
Sbjct: 80 ALAAGIATVHQELSLVPNLSVAENIFLG---REPTRRFGLIDRKAMRRRARELLARLGLD 136
Query: 788 SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNT 847
LVG LS QR+ + IA L + ++ +DEPT+ L + + +R
Sbjct: 137 IDPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRL 191
Query: 848 VDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRV 881
G ++ H+ E+FE D + +++ G V
Sbjct: 192 KAQGVAIIYISHRLD-EVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 2e-16
Identities = 54/204 (26%), Positives = 80/204 (39%), Gaps = 51/204 (25%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFA 734
+L NVS PG A++G SG+GK+TL ++ G R T G +
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV----------------- 59
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
R+ G D+ W L + V + EL
Sbjct: 60 RLDG----ADISQ---------WDPNELG-----------DHVGYLPQDDEL------FS 89
Query: 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTV 854
GS LS QR+RL +A L NP I+ +DEP S LD + +A+ G T
Sbjct: 90 GSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATR 149
Query: 855 VCTIHQPSIEIFEAFDELLLMKRG 878
+ H+P E + D +L+++ G
Sbjct: 150 IVIAHRP--ETLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 3e-16
Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 19/206 (9%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFA 734
L +V+ G L+G SG GK+TL+ ++AG T G I ++ P E+
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
R V Q P +T+ E++ F L+L + K + + V+EV L+ L+ L +
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFG--LKLRG-VPKAEIDKRVKEVAKLLGLEHLLNRKP 131
Query: 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD--TGR 852
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ + G
Sbjct: 132 L-----QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLGT 185
Query: 853 TVVCTIHQPSIEIFEAFDELLLMKRG 878
T + H +E D +++M G
Sbjct: 186 TTIYVTHDQ-VEAMTLADRIVVMNDG 210
|
Length = 338 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 4e-16
Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 26/225 (11%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGR---KTGGYIEGD-IKISGYPKEQSTF 733
L ++S G ALVG SG+GK+TL++++ R G I D + Y ++
Sbjct: 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIP-RFYDVDSGRILIDGHDVRDY--TLASL 74
Query: 734 ARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQR----HEFVEEVMSLVELDSL 789
R G V Q DV T+ E++ + +E+ + R HEF+ E L
Sbjct: 75 RRQIGLVSQ-DVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIME------LPEG 127
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 849
++G G LS QR+R+ IA L+ +P I+ +DE TS LD + +V A+ +
Sbjct: 128 YDTVIGERGV-KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK 186
Query: 850 TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
RT H+ S I A D +++++ G V + G H +++
Sbjct: 187 -NRTTFVIAHRLST-IENA-DRIVVLEDGKIV----ERGTHEELL 224
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 78.2 bits (194), Expect = 5e-16
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 23/190 (12%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQ 730
K Q+L VS G + AL+G +GAGKTTL+ + G G I I+G P
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP--- 68
Query: 731 STFARIS---GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEF-VEEVMSLV-E 785
R GYV + P++T+EE NL L + + + +E V L
Sbjct: 69 -PHERARAGIGYVPEGRRIFPELTVEE------NLLLGAYARRRAKRKARLERVYELFPR 121
Query: 786 LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVR 845
L R L G+ LS +++ L IA L++ P ++ +DEP+ GL + + A+R
Sbjct: 122 LKERRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIR 176
Query: 846 NTVDTGRTVV 855
D G T++
Sbjct: 177 ELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 7e-16
Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 26/221 (11%)
Query: 669 GIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKI----- 723
G + Q+L +++ +PG + L G SG+GKTTL+ ++ G ++ EG +K+
Sbjct: 12 GHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQEL 69
Query: 724 SGYPKEQSTFARIS-GYVEQEDVHSPQVTIEESLWFSANLRLPKE----ISKDQRHEFVE 778
G +++ R + GY+ Q H+ + L N+++ E +S + E
Sbjct: 70 YGASEKELVQLRRNIGYIFQA--HN----LLGFLTARQNVQMALELQPNLSYQEARERAR 123
Query: 779 EVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838
++ V L P LS Q++R+ IA LV P ++ DEPT+ LD+++
Sbjct: 124 AMLEAVGLGDHLDYY---PH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGR 178
Query: 839 IVMRAVRNTV-DTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
V+ ++ + G T++ H I + D ++ M+ G
Sbjct: 179 DVVELMQKLAREQGCTILIVTHDN--RILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 7e-16
Identities = 66/229 (28%), Positives = 101/229 (44%), Gaps = 36/229 (15%)
Query: 671 HEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYP 727
+ K +L ++S PG A+VG SG+GK+TL+ +L + G+I I G
Sbjct: 338 YPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR-----LYDPTSGEILIDGID 392
Query: 728 ----KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPK-EISKDQRHEFVEEVMS 782
S RI G V Q D TI E N+ L + + + ++ +EE +
Sbjct: 393 IRDISLDSLRKRI-GIVSQ-DPLLFSGTIRE------NIALGRPDATDEE----IEEALK 440
Query: 783 LVELDSLRHAL-------VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 835
L L VG LS QR+RL IA L+ NP I+ +DE TS LD
Sbjct: 441 LANAHEFIANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTE 499
Query: 836 AAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
A++ A++ + GRT + H+ S + D ++++ G V G
Sbjct: 500 TEALIQDALKKLLK-GRTTLIIAHRLSTI--KNADRIIVLDNGRIVERG 545
|
Length = 567 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 8e-16
Identities = 58/190 (30%), Positives = 98/190 (51%), Gaps = 11/190 (5%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKE 729
K +++ +VS + G + L+G +GAGKTT ++ G R G I D IS P
Sbjct: 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLH 73
Query: 730 QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL 789
I GY+ QE ++++ ++L A L++ ++S +QR + E+M ++ L
Sbjct: 74 ARARRGI-GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHL 130
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 849
R ++ S LS +R+R+ IA L ANP I +DEP +G+D + + R + + D
Sbjct: 131 RDSMGQS-----LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD 185
Query: 850 TGRTVVCTIH 859
+G V+ T H
Sbjct: 186 SGLGVLITDH 195
|
Length = 241 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 9e-16
Identities = 57/236 (24%), Positives = 109/236 (46%), Gaps = 25/236 (10%)
Query: 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVL 708
+ ++ +A+ N+S PG + L+G +GAGKTT ++
Sbjct: 2 ALEIEGVTKSFGDKKAVD-------------NISFEVPPGEIFGLLGPNGAGKTTTFRMI 48
Query: 709 AGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEI 768
G EG+I +G P Q RI GY+ +E P++T+E+ L + A L K +
Sbjct: 49 LGLLE--PTEGEITWNGGPLSQEIKNRI-GYLPEERGLYPKMTVEDQLKYLAEL---KGM 102
Query: 769 SKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEP 828
K + + ++ + +E+ + + LS ++++ ++ P ++ +DEP
Sbjct: 103 PKAEIQKKLQAWLERLEIVGKKTKKIKE-----LSKGNQQKIQFISAVIHEPELLILDEP 157
Query: 829 TSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
SGLD ++ A+ + G T++ + H+ + E D LL++K+G V+YG
Sbjct: 158 FSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYG 212
|
Length = 300 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 9e-16
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 16/187 (8%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFA 734
L +S + G + G +G GKTTL+ +LAG R G + + +++
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQRDEPH 72
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
R Y+ P+++ E NL I + +E+ ++ V L
Sbjct: 73 RNILYLGHLPGLKPELSALE------NLHFWAAIHGGAQRT-IEDALAAVGLTGFEDLPA 125
Query: 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTV 854
LS Q++RL +A ++ + +DEPT+ LD A++ +R + G V
Sbjct: 126 AQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV 180
Query: 855 VCTIHQP 861
+ T HQ
Sbjct: 181 LLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 1e-15
Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 21/221 (9%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---ST 732
+LL VS PG + A++G +GAGK+TL+ L+G + G++ ++G P
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEE 72
Query: 733 FARISGYVEQEDVHSPQVTIEESLWFSA-NLRLPKEISKDQRHEFVEEVMSLVELDSLRH 791
AR + Q + T++E + R +E +D+R + ++ +L L
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDER--IAAQALAATDLSGLAG 130
Query: 792 ALVGSPGSFGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRAVR 845
+ LS +++R+ +A L V + +F+DEPTS LD +R R
Sbjct: 131 RDYRT-----LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR 185
Query: 846 NTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
G V+ +H ++ A D ++L+ + GRVI G
Sbjct: 186 QLAREGGAVLAVLHDLNLAAQYA-DRIVLLHQ-GRVIASGS 224
|
Length = 259 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 31/222 (13%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KEQS 731
+L N+S PG + +VG SG+GK+TL ++ Y+ G + + G+ + +
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLALADPA 72
Query: 732 TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLV------- 784
R G V QE+V + + N+ L +R V E L
Sbjct: 73 WLRRQVGVVLQENVLFNRSIRD-------NIALADPGMSMER---VIEAAKLAGAHDFIS 122
Query: 785 ELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 844
EL +VG G+ GLS QR+R+ IA L+ NP I+ DE TS LD + +MR +
Sbjct: 123 ELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNM 181
Query: 845 RNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
+ GRTV+ H+ S + A D +++M+ GR++ G
Sbjct: 182 HDICA-GRTVIIIAHRLST-VKNA-DRIIVME-KGRIVEQGS 219
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 2e-15
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 24/203 (11%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ- 730
E +L +L V + G A+VG SG+GK+TL+ VLAG G++++ G P +
Sbjct: 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQPLHKL 77
Query: 731 ------STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLV 784
+ AR G+V Q P +T E N+ LP E+ + + +L+
Sbjct: 78 DEDARAALRARHVGFVFQSFHLIPNLTALE------NVALPLELRGESSADSRAGAKALL 131
Query: 785 ELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIV 840
E L L P LS +++R+ +A P ++F DEPT LD + A ++
Sbjct: 132 EAVGLGKRLTHYPAQ--LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 841 MRAVRNTVDTGRTVVCTIHQPSI 863
R + G T+V H P +
Sbjct: 190 FALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 16/213 (7%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKEQSTFA 734
L NVS G ++G +G+GK+ L++ +AG + G I + K I+ P E+
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI- 73
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
YV Q P +T+ +++ + R + + +V+ + E+ + H L
Sbjct: 74 ---SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIE------RKVLEIAEMLGIDHLLN 124
Query: 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTV 854
P + LS +++R+ IA LV NP I+ +DEP S LD R + ++
Sbjct: 125 RKPET--LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT 182
Query: 855 VCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887
V + E + D++ +M G++I GK
Sbjct: 183 VLHVTHDFEEAWALADKVAIM-LNGKLIQVGKP 214
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 4e-15
Identities = 54/192 (28%), Positives = 84/192 (43%), Gaps = 16/192 (8%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP------KEQS 731
L +VS G L G SGAGKTTL+ +L G T G ++I+G ++
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 732 TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRH 791
R G V Q+ P T+ E N+ LP E+ + E V + + L H
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYE------NVALPLEVRGKKEREIQRRVGAALRQVGLEH 129
Query: 792 ALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTG 851
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G
Sbjct: 130 KADAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 852 RTVVCTIHQPSI 863
TV+ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 4e-15
Identities = 69/237 (29%), Positives = 104/237 (43%), Gaps = 55/237 (23%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKT--GGYIEGDIKISGY 726
+L +S PG ALVGSSG GK+T++ D +G G I D+ +
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIR-DLNLRWL 75
Query: 727 PKEQSTFARISGYVEQEDVHSPQV---TIEESLWFSANLRLPKEISKDQR----HEFVEE 779
G V QE P + TI E++ + +E+ + + H+F+
Sbjct: 76 -------RSQIGLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFI-- 122
Query: 780 VMSLVE-LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838
MSL + D+L VG GS LS Q++R+ IA L+ NP I+ +DE TS LDA +
Sbjct: 123 -MSLPDGYDTL----VGERGS-QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEK 176
Query: 839 IVMRAVRNTVDTGRTVVCTIHQPS-------IEIFEA--------FDELLLMKRGGR 880
+V A+ + GRT + H+ S I + + DE LM + G
Sbjct: 177 LVQEAL-DRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDE--LMAQKGV 230
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 4e-15
Identities = 62/203 (30%), Positives = 96/203 (47%), Gaps = 16/203 (7%)
Query: 687 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KEQSTFARIS-GYVEQED 744
G L+G +GAGKTT + +L G G I + G P ++ AR G V Q D
Sbjct: 32 RGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHARQRVGVVPQFD 89
Query: 745 VHSPQVTIEESLW-FSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803
P T+ E+L F L S V ++ +L++ A VG LS
Sbjct: 90 NLDPDFTVRENLLVFGRYFGL----SAAAARALVPPLLEFAKLENKADAKVGE-----LS 140
Query: 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSI 863
++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ + G+T++ T H +
Sbjct: 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH--FM 198
Query: 864 EIFEAFDELLLMKRGGRVIYGGK 886
E E + L + GR I G
Sbjct: 199 EEAERLCDRLCVIEEGRKIAEGA 221
|
Length = 306 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 4e-15
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 25/224 (11%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP----KEQST 732
+L ++S +PG A+VG +GAGKTTL+ +L G GD+ + G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGRRFGKGETIFE 103
Query: 733 FARISGYVE---QEDVHSPQVTIEE---SLWFSANLRLPKEISKDQRHEFVEEVMSLVEL 786
+ G V E + T+ + S +F++ ++++ + + ++ L+
Sbjct: 104 LRKRIGLVSSELHERFR-VRETVRDVVLSGFFASIGIYQEDLTAEDLAA-AQWLLELLGA 161
Query: 787 DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD--ARAAAI-VMRA 843
L GS LS +++R+ IA LV +P ++ +DEP GLD AR + +
Sbjct: 162 KHLADRPFGS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEE 216
Query: 844 VRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887
+ + + T H EI F LL+K G V+ GKL
Sbjct: 217 LAASPGAPALLFVT-HHAE-EIPPCFTHRLLLK-EGEVVAQGKL 257
|
Length = 257 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 8e-15
Identities = 56/233 (24%), Positives = 89/233 (38%), Gaps = 61/233 (26%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIG----QTD 56
L++GP GSGKSTLL L G L SG + +G +L + ++ +G D
Sbjct: 29 FVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPD 85
Query: 57 NHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKK 116
+ TV E + F G P EI+
Sbjct: 86 DQFFGPTVEEEVAFGLENLG---------------------LPEEEIEE----------- 113
Query: 117 HSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIV-GPRKTLFMDEISTG 175
+ L ++GL+ D L SGGQK+RV ++ P L +DE + G
Sbjct: 114 ---RVEEALELVGLEGLRDRSP--FTL---SGGQKQRVAIAGVLAMDP-DILLLDEPTAG 164
Query: 176 LDSSTTFQIVKCVRNFVHQMDATALMA-----LLQPPPETFELFDDLVLLSDG 223
LD + ++++ ++ T ++ LL EL D +++L DG
Sbjct: 165 LDPAGRRELLELLKKL-KAEGKTIIIVTHDLDLL------LELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 56/219 (25%), Positives = 109/219 (49%), Gaps = 26/219 (11%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTL---MDVLAGRKTGG-YIEGDIKISGYPKEQSTF 733
L +VS G +T+++G +GAGK+TL M L + +G I+G ++++ P +
Sbjct: 17 LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG-LELTSTPSK--EL 73
Query: 734 ARISGYVEQEDVHSPQVTIEESLWFSANLRLP----KEISKDQRHEFVEEVMSLVELDSL 789
A+ ++QE+ + ++T+ + + F R P + +D+R + E + + L+ L
Sbjct: 74 AKKLSILKQENHINSRLTVRDLVGFG---RFPYSQGRLTKEDRRI--INEAIEYLHLEDL 128
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 849
+ LS QR+R IA+ L + + +DEP + LD + + +M+ +R D
Sbjct: 129 SDRYLDE-----LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLAD 183
Query: 850 T-GRTVVCTIHQPSIEIFEAF-DELLLMKRGGRVIYGGK 886
G+T+V +H I + D ++ +K G+V+ G
Sbjct: 184 ELGKTIVVVLH--DINFASCYSDHIVALKN-GKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 15/206 (7%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFA 734
L +VS G L AL+G SG+GKTTL+ ++AG R G I G + P ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRLPKE-ISKDQRHEFVEEVMSLVELDSLRHAL 793
R G+V Q +T+ +++ F ++ E + + V E++ LV+LD L
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY 133
Query: 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGR 852
P LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 134 ---PAQ--LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188
Query: 853 TVVCTIHQPSIEIFEAFDELLLMKRG 878
T V H E E D +++M +G
Sbjct: 189 TTVFVTHDQE-EALEVADRVVVMNKG 213
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 2e-14
Identities = 52/204 (25%), Positives = 87/204 (42%), Gaps = 40/204 (19%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKEQ-- 730
LL +VS PG + A++G +GAGK+TL+ L+ G + G+++++G P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWS 70
Query: 731 -STFARISGYVEQEDVHSPQVTIEESLWFSANL-------RLPKEISKDQRHEFVEEVMS 782
+ AR + PQ + SL F + R P +S+ + V ++
Sbjct: 71 PAELARRRAVL-------PQHS---SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALA 120
Query: 783 LVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARA 836
V+L L LS +++R+ +A L P + +DEPTS LD
Sbjct: 121 QVDLAHLAGRDYPQ-----LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH 175
Query: 837 AAIVMRAVRN-TVDTGRTVVCTIH 859
V+R R + G V+ +H
Sbjct: 176 QHHVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 19/209 (9%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 737
L +++ G L ++G SG GKTTL++++AG Y G I + G P E R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 738 GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSP 797
G V Q + P +++++ F L + K QR E +++ V L+ +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI--- 126
Query: 798 GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA----RAAAIVMRAVRNTVDTGRT 853
+ LS QR+R+ IA L ANP ++ +DEP LDA + ++++ + +TG+
Sbjct: 127 --WQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ---ETGKQ 181
Query: 854 VVCTIHQPSIEIFEAFDELLLMKRGGRVI 882
V+ H +F A + +LL GRV+
Sbjct: 182 VLLITHDIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 35/227 (15%)
Query: 679 SNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGR--KTGGYIEGDIKISGY-------PKE 729
+VS PG + +VG SG+GKTTL+ ++GR G + ++ E
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 730 QSTFARIS-GYVEQE--DVHSPQVTIEESLWFSANL--RLPKEISKDQRH-----EFVEE 779
+ R G+V Q D QV+ N+ RL ++ RH ++
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVSA------GGNIGERL---MAIGARHYGNIRAEAQD 133
Query: 780 VMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 839
+ VE+D R + P +F S ++RL IA LV P ++FMDEPT GLD A
Sbjct: 134 WLEEVEIDLDR--IDDLPRTF--SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQAR 189
Query: 840 VMRAVRNTV-DTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
++ +R V + G VV H ++ A D L++MK+ G+V+ G
Sbjct: 190 LLDLLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQ-GQVVESG 234
|
Length = 258 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-14
Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 22/189 (11%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS--T 732
L S +S + G + G +G+GKTTL+ +LAG G + ++G P + +
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRVLLNGGPLDFQRDS 70
Query: 733 FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHA 792
AR Y+ +++ E+L F D E VEE ++ V L+
Sbjct: 71 IARGLLYLGHAPGIKTTLSVLENLRFWH---------ADHSDEQVEEALARVGLNGFEDR 121
Query: 793 LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGR 852
V LS Q++R+ +A L++ + +DEPT+ LD A A+ G
Sbjct: 122 PVAQ-----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGG 176
Query: 853 TVVCTIHQP 861
VV T HQ
Sbjct: 177 MVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 58/180 (32%), Positives = 81/180 (45%), Gaps = 33/180 (18%)
Query: 669 GIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGY 726
G + L+NVS G +VG SG+GK+TL +LAG + + G I + G
Sbjct: 14 GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGK 69
Query: 727 P----KEQSTFARISGYVEQEDVHS---PQVTIEESLWFSANLRLPKEISKDQRHEFVEE 779
P K F R V Q D +S P+ T+ L S LR P +SK Q+ + E
Sbjct: 70 PLAPKKRAKAFYRPVQMVFQ-DPYSSLNPRRTVGRIL--SEPLR-PHGLSKSQQR--IAE 123
Query: 780 VMSLVELDS-----LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 834
++ V L H L G QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 124 LLDQVGLPPSFLDRRPHELSGG---------QRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 3e-14
Identities = 61/219 (27%), Positives = 99/219 (45%), Gaps = 19/219 (8%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQ 730
K+Q L VS G + AL+G +GAGKTTL+ + G R G I I+G P +
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 731 STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRH--EFVEEVMSLV-ELD 787
I YV + P++T+EE NL L +D+ +EEV L L
Sbjct: 75 RARLGI-AYVPEGRRIFPRLTVEE------NLLLGAYARRDKEAQERDLEEVYELFPRLK 127
Query: 788 SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNT 847
R+ G+ LS +++ L IA L++ P ++ +DEP+ GL + + A++
Sbjct: 128 ERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKEL 182
Query: 848 VDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
G + + Q + E D +++ GR++ G
Sbjct: 183 RKEGGMTILLVEQNARFALEIADRGYVLEN-GRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 63/215 (29%), Positives = 101/215 (46%), Gaps = 22/215 (10%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGY-P-KEQSTF 733
L +S G + +G +GAGKTT + +L+G + T G+++++G P K + F
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT----SGEVRVAGLVPWKRRKKF 92
Query: 734 -ARISGYVEQEDVHSPQVTIEESLWFSANL-RLPKEISKDQRHEFVEEVMSLVELDSLRH 791
RI Q+ + + +S + A + LP K + E E L++L+ L
Sbjct: 93 LRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSE----LLDLEELLD 148
Query: 792 ALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV-DT 850
V LS QR R IA L+ P I+F+DEPT GLD A + ++ +
Sbjct: 149 TPVRQ-----LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRER 203
Query: 851 GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
G TV+ T H ++ EA +L+ GR++Y G
Sbjct: 204 GTTVLLTSH--YMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 4e-14
Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 41/205 (20%)
Query: 675 LQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQ- 730
L +++VS PG + L+G +GAGKTTL +++ G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 731 ------STF--ARISGYVEQEDVHSPQVTIEE--------SLWFSANLRLPKEISKDQRH 774
TF R+ P +T+ E L S L P+ K++R
Sbjct: 77 ARLGIARTFQITRLF----------PGLTVLENVAVGAHARLGLSGLLGRPRAR-KEER- 124
Query: 775 EFVEEVMSL---VELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 831
E E L V L L G+ LS Q++RL IA L P ++ +DEP +G
Sbjct: 125 EARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAG 179
Query: 832 LDARAAAIVMRAVRNTVDT-GRTVV 855
L+ + +R D G T++
Sbjct: 180 LNPEETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 4e-14
Identities = 59/180 (32%), Positives = 85/180 (47%), Gaps = 19/180 (10%)
Query: 667 SKGIHEKKLQ--LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKIS 724
K E +Q +L NVS G + A+VGSSG+GK+TL+ +L G T GD+ +
Sbjct: 12 CKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFN 69
Query: 725 GYPKEQ-STFARIS------GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFV 777
G P + S+ A+ G++ Q P T E N+ +P I K + E
Sbjct: 70 GQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALE------NVAMPLLIGKKKPAEIN 123
Query: 778 EEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 837
+ ++ L H P LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 124 SRALEMLAAVGLEHRANHRPSE--LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 4e-14
Identities = 60/215 (27%), Positives = 103/215 (47%), Gaps = 17/215 (7%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTF 733
+L ++ FS +T LVG++G GK+TL L+G R G + K Y K
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74
Query: 734 AR--ISGYVEQEDVHSPQVTIEESLWFS-ANLRLPK-EISKDQRHEFVEEVMSLVELDSL 789
R ++ + + I+ + FS NL +P+ EI++ V+E ++LV+
Sbjct: 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLVDAQHF 129
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 849
RH + LS Q+KR+ IA LV + +DEPT+GLD ++ +R V
Sbjct: 130 RHQPIQC-----LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA 184
Query: 850 TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
G V+ + H + I+E D + ++++G + +G
Sbjct: 185 QGNHVIISSHDIDL-IYEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 22/196 (11%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKE 729
KK +++++VS + G + L+G +GAGKTT ++ G R G I D I+ P
Sbjct: 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH 74
Query: 730 QSTFARIS-GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKD-----QRHEFVEEVMSL 783
+ AR+ GY+ QE ++T+E+ N+ EI + +R E ++ ++
Sbjct: 75 KR--ARLGIGYLPQEASIFRKLTVED------NIMAVLEIREKDLKKAERKEELDALLEE 126
Query: 784 VELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 843
+ LR + S LS +R+R+ IA L ANP I +DEP +G+D A + R
Sbjct: 127 FHITHLRDSKAYS-----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRI 181
Query: 844 VRNTVDTGRTVVCTIH 859
+++ D G V+ T H
Sbjct: 182 IKHLKDRGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 6e-14
Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 24/224 (10%)
Query: 671 HEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY---- 726
K+ L +VS G + ++G SGAGK+TL+ + G + G + + G
Sbjct: 14 TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTL 71
Query: 727 --PKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEI---SKDQRHEFVEEVM 781
KE R G + Q + S N+ LP EI K + E V E++
Sbjct: 72 LSGKELRKARRRIGMIFQ------HFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELL 125
Query: 782 SLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 841
LV L+ A P LS Q++R+ IA L NP ++ DE TS LD ++
Sbjct: 126 ELVGLEDKADAY---PAQ--LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSIL 180
Query: 842 RAVRNT-VDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+R+ + G T+V H+ + + D + +M++G V G
Sbjct: 181 ALLRDINRELGLTIVLITHEMEV-VKRICDRVAVMEKGEVVEEG 223
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 7e-14
Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 13/205 (6%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-STFA 734
Q L +V+ G L AL+G SG+GK+TL+ ++AG + G I+++G +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARD 71
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
R G+V Q +T+ +++ F +R + R VEE++ LV+L+ L
Sbjct: 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR---VEELLELVQLEGL----- 123
Query: 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGR-T 853
G LS QR+R+ +A L P ++ +DEP LDA+ + +R D T
Sbjct: 124 GDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVT 183
Query: 854 VVCTIHQPSIEIFEAFDELLLMKRG 878
V H E E D +++M G
Sbjct: 184 TVFVTHDQE-EAMEVADRIVVMSNG 207
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 9e-14
Identities = 63/258 (24%), Positives = 112/258 (43%), Gaps = 37/258 (14%)
Query: 646 HPLTMTFHNISYYVDTPQAMRSKGIH----EKKLQLLSNVSGIFSPGVLTALVGSSGAGK 701
+TF + T QA+ + + ++ + L N + + G A++G SG+GK
Sbjct: 319 QKPEVTFPD-EQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGK 377
Query: 702 TTLMDVLAGRKTGGYIEGDIKISGYP----KEQSTFARISGYVEQEDVHSPQVTIEESLW 757
+TL+ +LAG +G I ++G EQ+ IS V + VH T+ +
Sbjct: 378 STLLQLLAGAWD--PQQGSITLNGVEIASLDEQALRETIS--VLTQRVHLFSGTLRD--- 430
Query: 758 FSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSP---------GSFGLSTEQRK 808
NLRL + D EE+ + ++ L L +P G LS +R+
Sbjct: 431 ---NLRLANPDASD------EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481
Query: 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEA 868
RL +A L+ + + +DEPT GLD V+ + + G+T++ H+ + E
Sbjct: 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHR--LRGLER 538
Query: 869 FDELLLMKRGGRVIYGGK 886
D ++++ G + G
Sbjct: 539 MDRIIVLDNGKIIEEGTH 556
|
Length = 573 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 9e-14
Identities = 60/236 (25%), Positives = 104/236 (44%), Gaps = 36/236 (15%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG-YPKEQ 730
E +L L+N+S F + ++G+SG+GK+TL+ G Y G I++ Y ++
Sbjct: 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDK 93
Query: 731 STFARISGYVEQEDVHS--------------PQV-----TIEESLWFS-ANLRLPKEISK 770
+ + + + P+ TIE+ + F L + K +K
Sbjct: 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK 153
Query: 771 DQRHEFVEEVMSLVE--LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEP 828
+ +F M L + L+ SP FGLS Q++R+ IA L P I+ DEP
Sbjct: 154 -KLAKFYLNKMGLDDSYLER-------SP--FGLSGGQKRRVAIAGILAIQPEILIFDEP 203
Query: 829 TSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
T+GLD + +M+ + + +TV H + E DE+++M +G + G
Sbjct: 204 TAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 9e-14
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQ-EDVH 746
G + ALVG +G+GK+TL L G G I I G P Q+ + YV Q E+V
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 747 -SPQVTIEESLWFS-----ANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSF 800
S V +E+ + LR K+ + + V ++ V++ RH +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKK----RDRQIVTAALARVDMVEFRHRQIGE---- 142
Query: 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 859
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 143 -LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 17/216 (7%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR 735
+ L +S G TAL+G +GAGK+TL+ L G G +K+ G
Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKW 76
Query: 736 ISGYV----EQEDVHSPQVTIEESLWFSA-NLRLPKEISKDQRHEFVEEVMSLVELDSLR 790
+ V + D T+ + + F N+ L KD+ VEE + V + R
Sbjct: 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGL----DKDEVERRVEEALKAVRMWDFR 132
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT 850
P + LS Q+KR+ IA L +P +I +DEP + LD R +M + +
Sbjct: 133 DK---PP--YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ 187
Query: 851 GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
G+TV+ H + E D+++++K G + G K
Sbjct: 188 GKTVIVATHDVDLAA-EWADQVIVLKEGRVLAEGDK 222
|
Length = 274 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-13
Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 37/218 (16%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP---KEQ 730
L ++ G ALVG SGAGKT+L++ L G++ +G +KI+G +
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALL-----GFLPYQGSLKINGIELRELDP 418
Query: 731 STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVE----- 785
++ + +V Q P T+ + N+ L + D E++ +E
Sbjct: 419 ESWRKHLSWVGQNP-QLPHGTLRD------NVLLGNPDASD------EQLQQALENAWVS 465
Query: 786 --LDSLRHAL---VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
L L L +G + GLS Q +RL +A L+ ++ +DEPT+ LDA + +V
Sbjct: 466 EFLPLLPQGLDTPIGD-QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLV 524
Query: 841 MRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
M+A+ N +T + HQ +E +D++ +M+ G
Sbjct: 525 MQAL-NAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 2e-13
Identities = 69/245 (28%), Positives = 116/245 (47%), Gaps = 37/245 (15%)
Query: 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDV 707
+T+ F N+SY KG + Q + +V+ F G A+VG +G+GK+TL+
Sbjct: 1 MTIRFDNVSY-------TYQKGTPYEH-QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQN 52
Query: 708 LAG--RKTGGYIE-GDIKISGYPKEQ--STFARISGYVEQ-------EDVHSPQVTIEES 755
+ + T G + DI I+ K++ + G V Q ED T+E
Sbjct: 53 INALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFED------TVERE 106
Query: 756 LWFS-ANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAV 814
+ F N ++ + K+ H L++L R + SP F +S Q +++ I
Sbjct: 107 IIFGPKNFKMNLDEVKNYAHRL------LMDLGFSRDVMSQSP--FQMSGGQMRKIAIVS 158
Query: 815 ELVANPSIIFMDEPTSGLDARAAAIVMRAVRN-TVDTGRTVVCTIHQPSIEIFEAFDELL 873
L NP II +DEPT+GLD ++ VMR +++ D +T++ H + E+ DE++
Sbjct: 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVI 217
Query: 874 LMKRG 878
+MK G
Sbjct: 218 VMKEG 222
|
Length = 286 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-13
Identities = 68/237 (28%), Positives = 110/237 (46%), Gaps = 50/237 (21%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFA 734
L+ N S PG ALVG SG+GK+T+ ++AG + G +I G P+E+
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 735 RISG---YVEQEDVHSPQVTIEE--SLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL 789
++ V+Q D+ + T+ + +LW +P + + D+
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNLTLWDPT---IP------------DADLVRACKDAA 593
Query: 790 RHALVGS-PGSF---------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 839
H ++ S PG + LS QR+RL IA LV NPSI+ +DE TS LD I
Sbjct: 594 IHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKI 653
Query: 840 VMRAVRNTVDTGRTVVCTI--HQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
+ +R R C I H+ S I + DE+++++R G+V+ + G H ++
Sbjct: 654 IDDNLRR-----RGCTCIIVAHRLST-IRDC-DEIIVLER-GKVV---QRGTHEELW 699
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 67/230 (29%), Positives = 103/230 (44%), Gaps = 39/230 (16%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 737
+VS PG + +VG SG+GKTTL++ L+ R G++ + +S
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD--AGEVHYRMRDGQLRDLYALS 79
Query: 738 ------------GYVEQ--EDVHSPQVTIEESLWFSANL--RLPKEISKDQRH-----EF 776
G+V Q D QV+ N+ RL ++ RH
Sbjct: 80 EAERRRLLRTEWGFVHQHPRDGLRMQVSA------GGNIGERL---MAVGARHYGDIRAT 130
Query: 777 VEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 836
+ + VE+D+ R + P +F S ++RL IA LV +P ++FMDEPT GLD
Sbjct: 131 AGDWLERVEIDAAR--IDDLPTTF--SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSV 186
Query: 837 AAIVMRAVRNTV-DTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
A ++ +R V + G VV H ++ A LL+MK+ GRV+ G
Sbjct: 187 QARLLDLLRGLVRELGLAVVIVTHDLAVARLLA-HRLLVMKQ-GRVVESG 234
|
Length = 258 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 62/209 (29%), Positives = 105/209 (50%), Gaps = 26/209 (12%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFARIS-GYVEQED 744
G +TA++G +GAGK+TL L G + + G I D K Y ++ R S G V Q+
Sbjct: 32 GEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDP 91
Query: 745 VHSP-QVTIEESLWFSA-NLRLPKEISKDQRHEFVEEVMSLVELDSLR----HALVGSPG 798
+ ++ + + F A NL+LP+ D+ + V+ + ++ L+ H L
Sbjct: 92 DNQLFSASVYQDVSFGAVNLKLPE----DEVRKRVDNALKRTGIEHLKDKPTHCL----- 142
Query: 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV-DTGRTVVCT 857
SFG Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G T++
Sbjct: 143 SFG----QKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA 198
Query: 858 IHQPSIEIFEAF-DELLLMKRGGRVIYGG 885
H I+I + D + +MK G ++ G
Sbjct: 199 TH--DIDIVPLYCDNVFVMKEGRVILQGN 225
|
Length = 283 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 63/215 (29%), Positives = 98/215 (45%), Gaps = 34/215 (15%)
Query: 654 NISY-YVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG-- 710
++ Y Y D +A++ +K G + AL+G +GAGK+TL G
Sbjct: 6 DLKYSYPDGTEALKGINFKAEK-------------GEMVALLGPNGAGKSTLFLHFNGIL 52
Query: 711 RKTGGYIEGDIKISGYPKEQSTFARIS-GYVEQ---EDVHSPQVTIEESLWFSA-NLRLP 765
+ T G + + Y K+ R + G V Q + + +P T+EE + F NL L
Sbjct: 53 KPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLS 110
Query: 766 KEISKDQRHEFVEEV-MSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIF 824
KE + + E ++ V M E H LS Q+KR+ IA L P II
Sbjct: 111 KEEVEKRVKEALKAVGMEGFENKPPHH----------LSGGQKKRVAIAGILAMKPEIIV 160
Query: 825 MDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 859
+DEPTSGLD A+ +M+ + + G T++ + H
Sbjct: 161 LDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTH 195
|
Length = 275 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 25/169 (14%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKEQSTF 733
L+++S PG L L+G +GAGKTTLMDV+ G R G +GD ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 734 ARIS-GYVEQEDVHSPQVTIEESL---------WFSANLRLPKEISKDQRHEFVEEVMSL 783
AR G Q+ +T+ E+L F A+L + +R ++E+++
Sbjct: 79 ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVF-ASLFARLRAEERRR---IDELLAT 134
Query: 784 VELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 832
+ L R L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 135 IGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 3e-13
Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 40/217 (18%)
Query: 687 PGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGY-P-KEQSTFARISGYVEQ 742
G + +G++GAGK+T + +L G T G + +++G P + + + R G V
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV----RVNGKDPFRRREEYLRSIGLV-- 102
Query: 743 EDVHSPQVTIEESLWFSAN-------LRLPKEISKDQRHEFVEEVMSLVELDS-LR---H 791
+ + LW+ L+L EI D+ E ++ + +++L+ L+
Sbjct: 103 -------MGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVR 155
Query: 792 ALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN-TVDT 850
L S G QR R +A L+ P ++F+DEPT GLD A A + ++ +
Sbjct: 156 KL-----SLG----QRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206
Query: 851 GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887
TV+ T H +I D +LL+ + G++++ G L
Sbjct: 207 QATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 61/216 (28%), Positives = 92/216 (42%), Gaps = 14/216 (6%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFA 734
L +VS G L G SGAGK+TL+ ++ G R T G I +S + F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 735 RIS-GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHAL 793
R G V Q+ P T+ E N+ LP + E V +++L L+H
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYE------NVALPLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRT 853
P LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALPSQ--LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 854 VVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGV 889
V+ H +E+ +L GR++ GV
Sbjct: 190 VLMATH--DLELVNRMRHRVLALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 4e-13
Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 22/226 (9%)
Query: 672 EKKLQLLSNVSGIFS--PGVLTALVGSSGAGKTTLMDVLAG---RKTGGYIEGDIKISG- 725
++ + VS F G + +VG SG+GK+ L + G + + G+I G
Sbjct: 15 AGVVKAVDGVS--FELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72
Query: 726 --YPKEQSTFARISG----YVEQEDVHS--PQVTIEESLWFSANLRLPKEISKDQRHEFV 777
+ +I G + Q+ + S P +TI + + L K +SK + E
Sbjct: 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG-KGLSKKEAKERA 131
Query: 778 EEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 837
E++ LV + L P LS R+R+ IA+ L NP ++ DEPT+ LD
Sbjct: 132 IELLELVGIPDPERRLKSYP--HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ 189
Query: 838 AIVMRAVRNTV-DTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882
A ++ ++ + G ++ H + + E D + +M GR++
Sbjct: 190 AQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY-AGRIV 233
|
Length = 316 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 5e-13
Identities = 49/209 (23%), Positives = 81/209 (38%), Gaps = 67/209 (32%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 735
L VS G + AL+G +GAGK+TLM +L+G + G+I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDG---------- 61
Query: 736 ISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRH--AL 793
++ SP+ D+ R A+
Sbjct: 62 -----KEVSFASPR-------------------------------------DARRAGIAM 79
Query: 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRT 853
V + LS +R+ + IA L N ++ +DEPT+ L + + +R G
Sbjct: 80 V-----YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVA 134
Query: 854 VVCTIHQPSIEIFEAFDELLLMKRGGRVI 882
V+ H+ E+FE D + ++ R GRV+
Sbjct: 135 VIFISHRLD-EVFEIADRVTVL-RDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 5e-13
Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 31/225 (13%)
Query: 679 SNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGR-----KTGGYIE---GDIKISGYPK-E 729
+VS PG + +VG SG+GK+TL+ LAGR T YI ++++ + E
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 730 QSTFARIS-GYVEQEDVHSPQVTIEESLWFSANL--RLPKEISKDQRH-----EFVEEVM 781
+ R G+V Q +P+ + + AN+ RL ++ RH ++ +
Sbjct: 80 RRRLMRTEWGFVHQ----NPRDGLRMRVSAGANIGERL---MAIGARHYGNIRATAQDWL 132
Query: 782 SLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 841
VE+D R + P +F S ++RL IA LV P ++FMDEPT GLD A ++
Sbjct: 133 EEVEIDPTR--IDDLPRAF--SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 188
Query: 842 RAVRNTV-DTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
+R V D G V+ H + A LL+M++ GRV+ G
Sbjct: 189 DLLRGLVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQ-GRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 69/212 (32%), Positives = 105/212 (49%), Gaps = 19/212 (8%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKEQST 732
+L +VS PG +TALVG SG+GK+T++ +L + GG + D K IS Y E
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQY--EHKY 85
Query: 733 FARISGYVEQEDV---HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL 789
V QE V S Q I L + + + K H F+ E+ S + +
Sbjct: 86 LHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTE-- 143
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 849
VG GS LS Q++R+ IA L+ NP ++ +DE TS LDA + V +A+ +
Sbjct: 144 ----VGEKGSQ-LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDW-P 197
Query: 850 TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRV 881
RTV+ H+ + E D++L++ GGR+
Sbjct: 198 ERRTVLVIAHR--LSTVERADQILVLD-GGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 38/233 (16%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPK 728
+L +VS G A+VG SG+GK+T++ DV +G I+G I
Sbjct: 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI---LIDG-QDIREV-- 68
Query: 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS 788
+ R G V Q D V +++ + N+R + + D E V E ++
Sbjct: 69 TLDSLRRAIGVVPQ-DT----VLFNDTIGY--NIRYGRPDATD---EEVIEAAKAAQIHD 118
Query: 789 LRHAL-------VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 841
VG G LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 119 KIMRFPDGYDTIVGERG-LKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 842 RAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
A+R V GRT + H+ S I A D+++++K GR++ G H +++
Sbjct: 178 AALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLK-DGRIVERGT---HEELL 223
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 6e-13
Identities = 62/252 (24%), Positives = 100/252 (39%), Gaps = 61/252 (24%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG----WELDEFQVQRASAYIGQT- 55
LL+GP GSGKSTLL L G L SG + +G E ++++ + Q
Sbjct: 32 RVLLIGPNGSGKSTLLKLLNGLL---KPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNP 88
Query: 56 DNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGK 115
D+ + TV + + F LE R EI+
Sbjct: 89 DDQLFGPTVEDEVAFG-------------------LENLGLPR--EEIEER--------- 118
Query: 116 KHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVT-TGEMIVGPRKTLFMDEIST 174
L ++GL+ D + SGGQK+RV G + +GP + L +DE +
Sbjct: 119 -----VAEALELVGLEELLDRPPFNL-----SGGQKQRVAIAGVLAMGP-EILLLDEPTA 167
Query: 175 GLDSSTTFQIVKCVRNFVHQMDATALMA-----LLQPPPETFELFDDLVLLSDGYLVYQG 229
GLD ++++ ++ + T ++ L+ E D +V+L DG ++ G
Sbjct: 168 GLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELV------LEYADRVVVLDDGKILADG 221
Query: 230 PRAEVLEFFESL 241
AE+ E L
Sbjct: 222 DPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 7e-13
Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 11/159 (6%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-STFARI 736
L VS G L+G SG GKTTL+ ++AG +T G+I + G R
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLPPHKRP 73
Query: 737 SGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
V Q P +T+ E++ F LRL K++ K + E V E + LV+L+ +
Sbjct: 74 VNTVFQNYALFPHLTVFENIAFG--LRL-KKLPKAEIKERVAEALDLVQLEGYANRKPSQ 130
Query: 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 835
LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 131 -----LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 8e-13
Identities = 64/213 (30%), Positives = 95/213 (44%), Gaps = 22/213 (10%)
Query: 678 LSNVSGIFS--PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE-QSTFA 734
L ++S F G + AL+G +GAGK+TL+ +L+G G I I G ST A
Sbjct: 20 LDDIS--FDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTA 75
Query: 735 RISGYVE---QEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVE---LDS 788
++ V QE P++T+ E+L+ +LP + R E +E +D
Sbjct: 76 ALAAGVAIIYQELHLVPEMTVAENLYLG---QLPHKGGIVNRRLLNYEAREQLEHLGVDI 132
Query: 789 LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV 848
+ LS QR+ + IA L N +I DEPTS L AR + R +R
Sbjct: 133 DPDTPLKY-----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELR 187
Query: 849 DTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRV 881
GR ++ H+ EIF D + + K G V
Sbjct: 188 AEGRVILYVSHRME-EIFALCDAITVFKDGRYV 219
|
Length = 501 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 8e-13
Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 25/222 (11%)
Query: 671 HEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGY 726
+ L +VS G + ++G SGAGK+TL+ ++ R T G +++G ++
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQ-DLTAL 73
Query: 727 P-KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEI---SKDQRHEFVEEVMS 782
E + G + Q T+ E N+ P E+ K + + V E++
Sbjct: 74 SEAELRQLRQKIGMIFQHFNLLSSRTVFE------NVAFPLELAGVPKAEIKQRVAELLE 127
Query: 783 LVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVM 841
LV L P LS Q++R+ IA L NP I+ DE TS LD +I+
Sbjct: 128 LVGLSDKADR---YPAQ--LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182
Query: 842 RAVRNTVDTGRTVVCTIHQPSIEIFEAF-DELLLMKRGGRVI 882
+ G T+V H+ +E+ + D + ++ + GR++
Sbjct: 183 LLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQ-GRLV 221
|
Length = 339 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 9e-13
Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 40/225 (17%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KEQSTF 733
+++ +S + G L+G +GAGK+T+ ++ G + G I + G P + +
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLAR 113
Query: 734 ARISGYVEQEDVHSPQVTIEESL-----WFSANLRLPKEISKDQRHEFVEEVM-SLVE-- 785
ARI G V Q D + T+ E+L +F + R +E V+ SL+E
Sbjct: 114 ARI-GVVPQFDNLDLEFTVRENLLVFGRYFGMSTRE------------IEAVIPSLLEFA 160
Query: 786 -LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 844
L+S A V LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +
Sbjct: 161 RLESKADARVSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERL 215
Query: 845 RNTVDTGRTVVCTIHQPSIEIFEAFDEL---LLMKRGGRVIYGGK 886
R+ + G+T++ T H E + L L + GR I G+
Sbjct: 216 RSLLARGKTILLTTH-----FMEEAERLCDRLCVLEAGRKIAEGR 255
|
Length = 340 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 9e-13
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 18/133 (13%)
Query: 702 TTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS----GYVEQEDVHSPQVTIEESLW 757
+TL+ ++ G G I + G + ++ G V Q+ P++T+ E+L+
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 758 FSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELV 817
F + EE + V L LS Q++R+ IA L+
Sbjct: 59 FGLR--------DKEADARAEEALERVGLPDFLDREPVG----TLSGGQKQRVAIARALL 106
Query: 818 ANPSIIFMDEPTS 830
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 1e-12
Identities = 63/238 (26%), Positives = 95/238 (39%), Gaps = 68/238 (28%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIG---QTDNHIA 60
LLG G+GK+T L L G+L SG+ NG+ + + A +G Q D
Sbjct: 33 LLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRT-DRKAARQSLGYCPQFDALFD 88
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
ELTVRE L F AR +G P EI
Sbjct: 89 ELTVREHLRFYARLKG---------------------LPKSEIKE--------------E 113
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
+ +L VLGL ++ + +SGG K++++ ++G L +DE ++GLD ++
Sbjct: 114 VELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPAS 168
Query: 181 TFQI------VKCVRNFV---HQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229
I V+ R+ + H MD E L D + ++SDG L G
Sbjct: 169 RRAIWDLILEVRKGRSIILTTHSMD------------EAEALCDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 1e-12
Identities = 70/247 (28%), Positives = 109/247 (44%), Gaps = 53/247 (21%)
Query: 650 MTFHNIS--YYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDV 707
+TF NI Y D+P+ +LSN++ PG +VG SG+GK+TL +
Sbjct: 456 ITFENIRFRYAPDSPE-------------VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKL 502
Query: 708 LAGRKTGGYIEGDIKISGYPKEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRL 764
L T + G + + G + R G V QE+V + + N+ L
Sbjct: 503 LQRLYTPQH--GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRD-------NIAL 553
Query: 765 PKEISKDQR----------HEFVEEVMSLVELDSLRHAL---VGSPGSFGLSTEQRKRLT 811
+ + H+F+ E L VG G+ LS QR+R+
Sbjct: 554 CNPGAPFEHVIHAAKLAGAHDFISE---------LPQGYNTEVGEKGA-NLSGGQRQRIA 603
Query: 812 IAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDE 871
IA LV NP I+ DE TS LD + A++MR +R + GRTV+ H+ S A D
Sbjct: 604 IARALVGNPRILIFDEATSALDYESEALIMRNMR-EICRGRTVIIIAHRLS--TVRACDR 660
Query: 872 LLLMKRG 878
++++++G
Sbjct: 661 IIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 31/215 (14%)
Query: 687 PGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGYPKEQSTFARISGYVE 741
G + A++G SG+GK+TL+ ++ G R G I DI + R+ G +
Sbjct: 33 RGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM-GVLF 91
Query: 742 QEDVHSPQVTIEESLWFS--ANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGS 799
Q+ +T+ E++ F + +LP+ + ++ + L++L LVG G+
Sbjct: 92 QQGALFSSLTVFENVAFPLREHTKLPESLIRE---------LVLMKL-----ELVGLRGA 137
Query: 800 FG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GR 852
LS RKR+ +A + +P ++F+DEPTSGLD +A ++ +R D G
Sbjct: 138 AADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGL 197
Query: 853 TVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887
TV+ H + D + ++ G+VI G
Sbjct: 198 TVIMVTHD-LDSLLTIADRVAVLAD-GKVIAEGTP 230
|
Length = 263 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-12
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
+T L+G G+GK+TLL LAG+ + +G I NG LD+ QR++ Y+ Q D H
Sbjct: 35 LTALMGESGAGKTTLLDVLAGRKTAGV-ITGEILINGRPLDK-NFQRSTGYVEQQDVHSP 92
Query: 61 ELTVRETLDFAARCQG 76
LTVRE L F+A +G
Sbjct: 93 NLTVREALRFSALLRG 108
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-12
Identities = 56/202 (27%), Positives = 86/202 (42%), Gaps = 19/202 (9%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY--IEGDIKISGY--- 726
E K ++L V+ G + A++G +G+GK+TL + G Y EG+I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 727 ---PKEQSTFARISGYVE-QEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMS 782
P E+ AR ++ Q V P VT + L + N R + + ++E
Sbjct: 72 ELSPDER---ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAE 128
Query: 783 LVELD-SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 841
L+ LD V G S ++KR I L+ P + +DEP SGLD A IV
Sbjct: 129 LLGLDEEFLERYVNE----GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVA 184
Query: 842 RAVRNTVDTGRTVVCTIHQPSI 863
+ + GR V+ H +
Sbjct: 185 EGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 70.0 bits (171), Expect = 2e-12
Identities = 57/211 (27%), Positives = 90/211 (42%), Gaps = 12/211 (5%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQST-FAR 735
+L ++S G L AL+G SG GKTTL+ +AG + G I I+ + R
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 736 ISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVG 795
+ Q P + +E+++ F LR K D E V + + LV L L
Sbjct: 80 GLALLFQNYALFPHLKVEDNVAFG--LRAQKMPKADI-AERVADALKLVGLGDAAAHL-- 134
Query: 796 SPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT--GRT 853
P LS ++R+ IA + P ++ +DEP S LDA A + + + T
Sbjct: 135 -PAQ--LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT 191
Query: 854 VVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
++C H + D+ +MK G +G
Sbjct: 192 ILCVTHDQD-DALTLADKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-12
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 19/164 (11%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY-IEGDIKISG-----YPKEQ 730
LL+NV+ + G + L+G SG GK+TL+ + G G + G++ ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 731 STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR 790
R G + Q+ + P +++ ++L F+ LP + + R + LD
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 834
H P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQ---DPAT--LSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 3e-12
Identities = 63/220 (28%), Positives = 97/220 (44%), Gaps = 44/220 (20%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEG-DIKISGYPKE 729
L+ +S G A+VG SGAGK+T++ DV +G T I+G DI+ +
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT---IDGQDIRD---VTQ 332
Query: 730 QSTFARISGYVEQEDV-----------HSPQVTIEESLWFSANLRLPKEISKDQRHEFVE 778
QS I G V Q+ V + E + +A Q H+F++
Sbjct: 333 QSLRRAI-GIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAE--------AAQIHDFIQ 383
Query: 779 EVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838
SL E G LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 384 ---SLPEGYDTGVGERG----LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQ 436
Query: 839 IVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
+ A+R V GRT + H+ S I +A DE++++ G
Sbjct: 437 AIQAALRE-VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 4e-12
Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 22/216 (10%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK-EQSTFAR 735
+++++S + G L+G +GAGK+T+ +L G + G I + G P ++ AR
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLAR 76
Query: 736 IS-GYVEQEDVHSPQVTIEESLW-FSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHAL 793
++ G V Q D P+ T+ E+L F + S + + ++ L+S
Sbjct: 77 VAIGVVPQFDNLDPEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARLESKADVR 132
Query: 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRT 853
V LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T
Sbjct: 133 VAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT 187
Query: 854 VVCTIHQPSIEIFEAFDEL---LLMKRGGRVIYGGK 886
++ T H E + L L + GR I G+
Sbjct: 188 ILLTTH-----FMEEAERLCDRLCVLESGRKIAEGR 218
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 5e-12
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 15/163 (9%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYI-EGDIKISGYPKEQST 732
L ++S G L+G SG GKTTL+ ++AG R+T G I +G I+ P ++
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD 77
Query: 733 FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHA 792
+ G V Q P +T+ +++ + + + + + E V E++ LV L
Sbjct: 78 Y----GIVFQSYALFPNLTVADNIAYGLK---NRGMGRAEVAERVAELLDLVGLPGSERK 130
Query: 793 LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 835
PG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 131 Y---PGQ--LSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 5e-12
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI---EGDIKISGYPKEQSTFA 734
L VS G + +G +GAGK+T M ++ G Y+ G +++ G Q+
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 735 --RISGYVEQEDVHSP---QVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL 789
R GY+ + H+P + + E L F A + K QR VEE++ LV L
Sbjct: 73 VQRNIGYLPE---HNPLYLDMYVREYLQFIAGIYGMKGQLLKQR---VEEMIELVGLRPE 126
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 849
+H +G LS R+R+ +A L+ +P ++ +DEPT+GLD + +R V +
Sbjct: 127 QHKKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPN-QLVEIRNVIKNIG 180
Query: 850 TGRTVVCTIH 859
+T++ + H
Sbjct: 181 KDKTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-12
Identities = 61/224 (27%), Positives = 106/224 (47%), Gaps = 29/224 (12%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQ 730
K ++N+S + L+G +GAGK+TL+ ++ G R T G+I G+P +
Sbjct: 11 GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTR 66
Query: 731 STFARISGYVEQEDVHSPQVTIEESLWFSA-NLRLPKEISKDQRHEFVEEVMSLVELDSL 789
+I +E ++ +T E+L L LP D R ++EV+++V+L +
Sbjct: 67 KDLHKIGSLIESPPLYE-NLTARENLKVHTTLLGLP-----DSR---IDEVLNIVDLTNT 117
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 849
F L +QR L IA+ L+ +P ++ +DEPT+GLD + +R+ +
Sbjct: 118 GKKKAKQ---FSLGMKQR--LGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE 172
Query: 850 TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQI 893
G TV+ + H S E+ + D + +I G LG +I
Sbjct: 173 QGITVILSSHILS-EVQQLADHI-------GIISEGVLGYQGKI 208
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 5e-12
Identities = 63/210 (30%), Positives = 98/210 (46%), Gaps = 24/210 (11%)
Query: 685 FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQST-FARISGYVEQE 743
G + A++G SGAGK+TL++++AG +T G+I I+G S R + QE
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQE 79
Query: 744 DVHSPQVTIEES--LWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFG 801
+ +T+ ++ L S L+L E QR E VE + V L L PG
Sbjct: 80 NNLFAHLTVAQNIGLGLSPGLKLNAE----QR-EKVEAAAAQVGLAGFLKRL---PGE-- 129
Query: 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRAVRNTV--DTGRTVVCT 857
LS QR+R+ +A LV I+ +DEP S LD RA M A+ + + + T++
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTLLMV 186
Query: 858 IHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887
H P + D ++ + GR+ G
Sbjct: 187 THHPE-DAARIADRVVFLDN-GRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 8e-12
Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 30/219 (13%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 737
L+N++ I A++G +GAGK+TL G G + I G P + +
Sbjct: 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVR 77
Query: 738 GYV------EQEDVHSPQVTIEESLWFS-ANLRLPKEISKDQRHEFVEEVMSLVELDSLR 790
+V + + SP T+E+ + F NL L +E + V + ++ L+ LR
Sbjct: 78 KFVGLVFQNPDDQIFSP--TVEQDIAFGPINLGLDEETVAHR----VSSALHMLGLEELR 131
Query: 791 ----HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN 846
H L G ++KR+ IA + P ++ +DEPT+GLD + ++ + +
Sbjct: 132 DRVPHHLSGG---------EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLND 182
Query: 847 TVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+T G TV+ + HQ + + E D + +M +G V YG
Sbjct: 183 LPETYGMTVIFSTHQLDL-VPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 8e-12
Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 19/215 (8%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKEQST 732
+L VS G +T ++G +G GKTTL+ L G K+G I+ P +
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73
Query: 733 FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVE-LDSLRH 791
A I YV Q P++T+EE NL + + +E+ L L +
Sbjct: 74 RAGI-AYVPQGREIFPRLTVEE------NLLTGLAALPRRSRKIPDEIYELFPVLKEMLG 126
Query: 792 ALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTG 851
G LS Q+++L IA LV P ++ +DEPT G+ + R +R G
Sbjct: 127 RRGGD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEG 181
Query: 852 RTVVCTIHQPSIEI-FEAFDELLLMKRGGRVIYGG 885
+ + Q ++ E D +M+R GRV+ G
Sbjct: 182 GMAILLVEQ-YLDFARELADRYYVMER-GRVVASG 214
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 9e-12
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 12/96 (12%)
Query: 140 SEMLRGVSGGQKKRVTTG-EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDAT 198
S +LRG+S Q+KR+T G E+ P LF+DE ++GLDS + IV+ ++ A
Sbjct: 103 SALLRGLSVEQRKRLTIGVELAAKP-SILFLDEPTSGLDSQAAYNIVRFLKKL-----AD 156
Query: 199 ALMALL----QPPPETFELFDDLVLL-SDGYLVYQG 229
+ A+L QP FE FD L+LL G VY G
Sbjct: 157 SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 9e-12
Identities = 61/235 (25%), Positives = 96/235 (40%), Gaps = 43/235 (18%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG---WELDEFQVQRASAYIGQTDNHIA 60
+LGP GSGKSTLL LAG L KSG + +G L ++ + AY+ Q+ +
Sbjct: 33 ILGPNGSGKSTLLKCLAGLL---KPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
LTV E + P + K+
Sbjct: 90 GLTVYELV-------------------------LLGRYP------HLGLFGRPSKEDEEI 118
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
+ L +LGL+ +D V +SGG+++RV + L +DE ++ LD +
Sbjct: 119 VEEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
++++ +R+ + T +M L D L+LL DG +V QG EVL
Sbjct: 174 QIEVLELLRDLNREKGLTVVMV-LHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 9e-12
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 13/172 (7%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIK-ISGYP 727
Q + NV+ G + AL+G SG GKTT + D+ G + G I D + I G
Sbjct: 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77
Query: 728 KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL- 786
+ R G V Q+ P +++ +++ A L+L +D E E + L
Sbjct: 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNV--VAGLKLAGIRDRDHLMEVAERSLRGAALW 135
Query: 787 DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838
D ++ L +P + GLS Q++RL IA L P I+ MDEPTS LD + A
Sbjct: 136 DEVKDRL-KTPAT-GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185
|
Length = 252 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 17/162 (10%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKEQSTF 733
L +++ + G L+G SG GKTT + ++AG T G YI G PK+
Sbjct: 16 LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD---- 71
Query: 734 ARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHAL 793
R V Q P +T+ +++ F LR + D+R V EV L++++ L
Sbjct: 72 -RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRK 127
Query: 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 835
LS QR+R+ + +V P + MDEP S LDA+
Sbjct: 128 PKQ-----LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 1e-11
Identities = 61/252 (24%), Positives = 103/252 (40%), Gaps = 29/252 (11%)
Query: 686 SPGV-LTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKEQ-STFARISGY 739
PG +TA+ G SG+GKTTL+ ++AG R G + G R GY
Sbjct: 20 LPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79
Query: 740 VEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGS 799
V QE P +++ +L + K +R E V+ L+ + H L PG
Sbjct: 80 VFQEARLFPHLSVRGNLRYGM-----KRARPSERRISFERVIELLGIG---HLLGRLPGR 131
Query: 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRAVRNTVDTGRTVVCTI 858
LS +++R+ I L+++P ++ MDEP + LD R I+ R + G ++
Sbjct: 132 --LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVS 189
Query: 859 HQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVL 918
H E+ D +++++ GRV G I +P + ++
Sbjct: 190 HSLQ-EVLRLADRVVVLED-GRVAAAGP--------IAEVWASPDLPWLA--REDQGSLI 237
Query: 919 EVTTTAVEEKLG 930
E ++ G
Sbjct: 238 EGVVAEHDQHYG 249
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 1e-11
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 25/172 (14%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG--- 725
L +++ +TAL+G SG GK+TL+ D++ G + +EG++ + G
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNI 76
Query: 726 YPKEQSTFA---RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMS 782
Y + R+ G V Q+ P +I +++ + LRL I + E VE +
Sbjct: 77 YDPKVDVVELRRRV-GMVFQKPNPFPM-SIYDNV--AYGLRL-HGIKDKELDEIVESSLK 131
Query: 783 LVEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
L D ++ L S GLS Q++RL IA L P ++ MDEPTS LD
Sbjct: 132 KAALWDEVKDRLHKSA--LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 1e-11
Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 26/235 (11%)
Query: 667 SKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI-EGDIKISG 725
+K ++ Q L V G + AL+G SG+GK+TL+ L+G TG I++ G
Sbjct: 11 AKTFNQH--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLG 68
Query: 726 YP-KEQSTFAR-------ISGYVEQEDVHSPQVTIEESLWFSANLRLP------KEISKD 771
+ + AR +GY+ Q+ ++++ E++ A P +++
Sbjct: 69 RTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTRE 128
Query: 772 QRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 831
Q+ ++ ++ V + H V + LS Q++R+ IA L+ +I DEP +
Sbjct: 129 QKQRALQ-ALTRVGMVHFAHQRVST-----LSGGQQQRVAIARALMQQAKVILADEPIAS 182
Query: 832 LDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
LD +A IVM +R+ G TVV T+HQ ++ + E ++ R G V Y G
Sbjct: 183 LDPESARIVMDTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 56/238 (23%), Positives = 88/238 (36%), Gaps = 53/238 (22%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDE---FQVQRASAYIGQTDNHIA 60
LLG G+GK+TLL +A L + SG +T +G + F ++ G+ + A
Sbjct: 33 LLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLY-A 88
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
LT RE L + AR + L+R E + I K
Sbjct: 89 RLTARENLKYFAR-----------LNGLSRKEIKA------RIAELSKR----------- 120
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
L L D VG S G K++V +V L +DE ++GLD T
Sbjct: 121 -------LQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT 168
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPP--PETFELFDDLVLLSDGYLVYQGPRAEVLE 236
+ +F+ Q+ + E L D +++L G +V +G +
Sbjct: 169 R----RKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-11
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 47/179 (26%)
Query: 667 SKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 726
SKG + LL ++S G A+VG +GAGK+TL+ +LAG + G + G +K+ G
Sbjct: 328 SKGY-DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG-ELGP-LSGTVKV-GE 383
Query: 727 PKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL 786
+ GY +Q H ++ ++++ E + E +
Sbjct: 384 TVK-------IGYFDQ---HRDELDPDKTVL-----------------EELSEGFPDGDE 416
Query: 787 DSLRHALVGSPGSFGLSTE------------QRKRLTIAVELVANPSIIFMDEPTSGLD 833
+R L G FG + E ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 417 QEVRAYL----GRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 51/201 (25%), Positives = 96/201 (47%), Gaps = 20/201 (9%)
Query: 694 VGSSGAGKTTLMDVLAGR--KTGGYIE-GDIKISGYPKEQ--STFARISGYVEQEDVHSP 748
+GS+GAGK+TL++ +AG T G I + ++ + + AR+ + + +P
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARV--FQDPLAGTAP 95
Query: 749 QVTIEE--SLWFSANLR--LPKEISKDQRHEFVEEVMSLVE-LDSLRHALVGSPGSFGLS 803
++TIEE +L S + L +++ +R F E + L L++ +G LS
Sbjct: 96 ELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL-----LS 150
Query: 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV-DTGRTVVCTIHQPS 862
QR+ L++ + + P I+ +DE T+ LD + A VM V + T + H +
Sbjct: 151 GGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTH--N 208
Query: 863 IEIFEAFDELLLMKRGGRVIY 883
+E + L+M G+++
Sbjct: 209 MEDALDYGNRLIMLHSGKIVL 229
|
Length = 263 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 17/175 (9%)
Query: 666 RSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG 725
+S G E +L +L+ V + G AL+G SG+GK+TL+ +LAG G G++ + G
Sbjct: 14 KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVG 71
Query: 726 YP-----KEQSTF--ARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVE 778
P +E A+ G+V Q + P + E N+ LP + + +
Sbjct: 72 QPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALE------NVELPALLRGESSRQSRN 125
Query: 779 EVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
+L+E L L P LS +++R+ +A P ++F DEPT LD
Sbjct: 126 GAKALLEQLGLGKRLDHLPAQ--LSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 3e-11
Identities = 70/226 (30%), Positives = 102/226 (45%), Gaps = 26/226 (11%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKIS 724
EKK + NV+ +TA++G SG GKTTL+ D + G + +EG I
Sbjct: 15 EKKA--VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFK 68
Query: 725 GY----PKEQSTFARIS-GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEE 779
G P+ T R G V Q+ P ++I +++ F R+ SK + VEE
Sbjct: 69 GQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEE 125
Query: 780 VMSLVEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838
+ L D ++ L PG+ LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 126 SLKKAALWDEVKSEL-NKPGT-RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQ 183
Query: 839 IVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
+ + + T+V H I A D + M RG + YG
Sbjct: 184 RI-EKLLEELSENYTIVIVTHNIGQAIRIA-DYIAFMYRGELIEYG 227
|
Length = 250 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-11
Identities = 70/260 (26%), Positives = 109/260 (41%), Gaps = 63/260 (24%)
Query: 651 TFHNISY-YVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLA 709
F ++S+ Y ++ Q + +VS PG A+VG +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDNSRQG-------------VEDVSFEAKPGQTVAIVGPTGAGKSTLINLL- 381
Query: 710 GRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWF----SANLRLP 765
++ G I I G I + V +++ F N+R+
Sbjct: 382 -QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVG 432
Query: 766 KEISKD----------QRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVE 815
+ + D Q H+F+E D +VG G LS +R+RL IA
Sbjct: 433 RPDATDEEMRAAAERAQAHDFIER--KPDGYD----TVVGERGR-QLSGGERQRLAIARA 485
Query: 816 LVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPS-------IEIFEA 868
L+ +P I+ +DE TS LD A V A+ + + GRT H+ S I +F+
Sbjct: 486 LLKDPPILILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLSTVRNADRILVFDN 544
Query: 869 --------FDELLLMKRGGR 880
FDEL+ RGGR
Sbjct: 545 GRVVESGSFDELV--ARGGR 562
|
Length = 588 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 61/235 (25%), Positives = 103/235 (43%), Gaps = 37/235 (15%)
Query: 670 IHEKKLQL-------LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGR----KTGGYIE 718
+ + L + L+++S G +TAL+G +G GK+TL+ A R ++G
Sbjct: 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFL 61
Query: 719 GDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEE------SLWFSANLRLPKEISKDQ 772
GD IS Q AR + Q + +T+ E S W S RL ++D
Sbjct: 62 GDKPISMLSSRQ--LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLS---AEDN 116
Query: 773 RHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 832
V + M ++ L + LS QR+R +A+ L + ++ +DEPT+ L
Sbjct: 117 AR--VNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYL 169
Query: 833 DARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEA---FDELLLMKRGGRVIYG 884
D +MR +R G+TVV +H ++ +A D L+++ G + G
Sbjct: 170 DINHQVELMRLMRELNTQGKTVVTVLH----DLNQASRYCDHLVVLANGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 4e-11
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 17/211 (8%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKE-QSTFA 734
+VS G + AL+G +GAGK+TLM +L G + G+I++ G +S
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEIRVDGKEVRIKSPRD 75
Query: 735 RIS---GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRH 791
I G V Q + P +T+ E++ I + Q ++E+ L
Sbjct: 76 AIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD 135
Query: 792 ALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTG 851
A V LS +++R+ I L ++ +DEPT+ L + A + +R G
Sbjct: 136 AKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEG 190
Query: 852 RTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882
+T++ H+ E+ D + ++ R G+V+
Sbjct: 191 KTIIFITHKLK-EVMAIADRVTVL-RRGKVV 219
|
Length = 501 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 4e-11
Identities = 49/173 (28%), Positives = 83/173 (47%), Gaps = 13/173 (7%)
Query: 670 IHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVL--------AGRKTGGYIEGDI 721
+H K + +VS F +TA++G SG GK+T++ + + R TG + D
Sbjct: 12 VHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDT 71
Query: 722 KISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVM 781
I + + R G V Q+ P ++I +++ A +L +++ + E VE +
Sbjct: 72 DIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNV--IAGYKLNGRVNRSEADEIVESSL 129
Query: 782 SLVEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
V L D ++ L + + LS Q++RL IA + P +I MDEP S LD
Sbjct: 130 KRVALWDEVKDRLKSN--AMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 5e-11
Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 19/222 (8%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 737
L ++S + PG ALVG SG+GK+TL++++ + G I + G+ T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 738 GYVEQ--EDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEE--VMSLVE-LDSLRHA 792
V +DV TI ++ + ++ + + + V+ L
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGR----TEQADRAEIERALAAAYAQDFVDKLPLGLDT 461
Query: 793 LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGR 852
+G G LS QR+RL IA L+ + I+ +DE TS LD + +V A+ + GR
Sbjct: 462 PIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL-ERLMQGR 519
Query: 853 TVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
T + H+ S E D +++M GR++ + G H++++
Sbjct: 520 TTLVIAHRLS--TIEKADRIVVMDD-GRIV---ERGTHNELL 555
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 5e-11
Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 29/177 (16%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRK----TGGYIEGDIKISG---Y 726
+ +V+ P +TA +G SG GK+T++ L R G +EG++ + G Y
Sbjct: 16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLY 74
Query: 727 PK--EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLV 784
+ R G V Q P ++I +++ A L+L +K E VE+
Sbjct: 75 GPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNV--VAGLKLNGVRNKKDLDELVEK----- 127
Query: 785 ELDSLRHA--------LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
SLR A + PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 128 ---SLRGANLWNEVKDRLDKPGG-GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 5e-11
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 25/175 (14%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG--- 725
Q L +++ +TAL+G SG GK+TL+ D++ G K I G + + G
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDI 72
Query: 726 YPKEQSTFARIS-GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRH--EFVEEVMS 782
Y RI G V Q+ P ++I E++ + L + KD++ E VE +
Sbjct: 73 YGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYG----LRAQGIKDKKVLDEVVERSLR 127
Query: 783 LVEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 836
L D ++ L S FGLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 128 GAALWDEVKDRL-KSHA-FGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (157), Expect = 5e-11
Identities = 69/260 (26%), Positives = 120/260 (46%), Gaps = 29/260 (11%)
Query: 654 NISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--R 711
N +Y ++P A R+ L ++ G TAL+G +G+GK+TL+ L G +
Sbjct: 8 NYTYQPNSPFASRA----------LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ 57
Query: 712 KTGGYIE-GDIKISGYPKEQST--FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKE- 767
T G + GDI +S K++ + G V Q P+ + E P+
Sbjct: 58 PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQ----FPESQLFEETVLKDVAFGPQNF 113
Query: 768 -ISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMD 826
I K++ + E + +V L SP F LS Q +R+ IA L P ++ +D
Sbjct: 114 GIPKEKAEKIAAEKLEMVGLA--DEFWEKSP--FELSGGQMRRVAIAGILAMEPEVLVLD 169
Query: 827 EPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
EPT+GLD +A +M+ + +G+TVV H ++ + D + L+++G + G
Sbjct: 170 EPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISCGTP 228
Query: 887 LGVHSQIMIDYFQGLD-GIP 905
V + +D+ + + G+P
Sbjct: 229 SDVFQE--VDFLKAHELGVP 246
|
Length = 288 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 5e-11
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 17/190 (8%)
Query: 693 LVGSSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQ 749
L+G SG GKTTL+ +LAG + G + ++ P R V Q P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 750 VTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKR 809
+T+EE++ F L++ K + + V E + LV+L+ LS Q++R
Sbjct: 57 MTVEENVAFG--LKMRKV-PRAEIKPRVLEALRLVQLEEF-----ADRKPHQLSGGQQQR 108
Query: 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEA 868
+ +A LV P I+ +DEP S LD + + ++ + G T V H E
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE-EAMTM 167
Query: 869 FDELLLMKRG 878
D + +M++G
Sbjct: 168 SDRIAIMRKG 177
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 6e-11
Identities = 64/213 (30%), Positives = 108/213 (50%), Gaps = 31/213 (14%)
Query: 692 ALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQ-- 749
ALVG +G+GK+TL +L G EG+I++ G P + +S V ++ V Q
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRP-----LSSLSHSVLRQGVAMVQQD 423
Query: 750 -VTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR-------HALVGSPGSFG 801
V + ++ F AN+ L ++IS++Q V + + V+L L + +G G+
Sbjct: 424 PVVLADT--FLANVTLGRDISEEQ----VWQALETVQLAELARSLPDGLYTPLGEQGN-N 476
Query: 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQP 861
LS Q++ L +A LV P I+ +DE T+ +D+ + +A+ V T+V H+
Sbjct: 477 LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRL 535
Query: 862 SIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
S I EA D +L++ RG V + G H Q++
Sbjct: 536 ST-IVEA-DTILVLHRGQAV----EQGTHQQLL 562
|
Length = 592 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 6e-11
Identities = 61/215 (28%), Positives = 91/215 (42%), Gaps = 28/215 (13%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L V G L LVG +GAGKTTL+ + G T G + ++G E +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 737 SGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKD-QRHEF----------VEEVMSLVE 785
S V PQ + SL F ++R E+ + R F VE M
Sbjct: 76 SRRVAS----VPQ---DTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTG 128
Query: 786 LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVR 845
+ V S LS +R+R+ +A L ++ +DEPT+ LD + VR
Sbjct: 129 VAQFADRPVTS-----LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVR 183
Query: 846 NTVDTGRTVVCTIHQPSIEIFEAF-DELLLMKRGG 879
VD G+T V IH +++ + DEL+L+ G
Sbjct: 184 RLVDDGKTAVAAIH--DLDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAE 61
+L GP GSGK+TLL +AG L +G+I +G ++D+ V A Y+G +
Sbjct: 31 LVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPA 87
Query: 62 LTVRETLDFAARCQGANDSFAA 83
LTV E L+F A G + A
Sbjct: 88 LTVAENLEFWAAFLGGEELDIA 109
|
Length = 207 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 1e-10
Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 22/207 (10%)
Query: 685 FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFA-RISGYVEQE 743
F+ G +TA+VG SG+GK+TL++++AG +T G + I+G + A R + QE
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQS--GRVLINGVDVTAAPPADRPVSMLFQE 78
Query: 744 DVHSPQVTIEES--LWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFG 801
+ +T+E++ L S L+L + + +E ++ V L L L G
Sbjct: 79 NNLFAHLTVEQNVGLGLSPGLKL-----TAEDRQAIEVALARVGLAGLEKRLPGE----- 128
Query: 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRAVRNTV--DTGRTVVCTI 858
LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T TV+
Sbjct: 129 LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKMTVLMVT 186
Query: 859 HQPSIEIFEAFDELLLMKRGGRVIYGG 885
HQP + ++ + GR+ G
Sbjct: 187 HQPE-DAKRLAQRVVFLDN-GRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 1e-10
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 17/193 (8%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 731
++L +S G + ++G SG+GK+TL+ L G G I D + G K+
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDIL 73
Query: 732 TFARISGYVEQEDVHSPQVTIEESLWFSANLRLP----KEISKDQRHEFVEEVMSLVELD 787
R G V Q+ P +T+ E N+ L K++SK + E E++ V L
Sbjct: 74 KLRRKVGMVFQQFNLFPHLTVLE------NVTLAPVKVKKLSKAEAREKALELLEKVGLA 127
Query: 788 SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNT 847
A P LS Q++R+ IA L +P ++ DEPTS LD V+ +++
Sbjct: 128 DKADAY---PAQ--LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182
Query: 848 VDTGRTVVCTIHQ 860
+ G T++ H+
Sbjct: 183 AEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-10
Identities = 60/220 (27%), Positives = 108/220 (49%), Gaps = 13/220 (5%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFA 734
L +S G A++G SG+GK+TL ++ G G +++ G +Q TF
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDRETFG 391
Query: 735 RISGYVEQEDVHSPQVTIEESLW-FSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHAL 793
+ GY+ Q DV T+ E++ F N P++I + + V E+ ++ L +
Sbjct: 392 KHIGYLPQ-DVELFPGTVAENIARFGENAD-PEKIIEAAKLAGVHEL--ILRLPDGYDTV 447
Query: 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRT 853
+G G+ LS QR+R+ +A L +P ++ +DEP S LD + A++ G T
Sbjct: 448 IGPGGA-TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGIT 506
Query: 854 VVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQI 893
VV H+PS + D++L+++ G +G + V +++
Sbjct: 507 VVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLAKL 544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 28/170 (16%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFA 734
L+++S PG L ++G +GAGKTT+MDV+ G R G + G ++G P+ Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRL----PKEI--------SKDQRHEFVEEVMS 782
I G Q P T+ E+L NL L K + S +++ +EEV+
Sbjct: 78 GI-GRKFQ----KP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-IEEVLE 129
Query: 783 LVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 832
+ L L G LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 130 TIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-10
Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 51/240 (21%)
Query: 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNH 58
T L+G G+GKSTLL L G L G I NG +L + ++ +++ Q + +
Sbjct: 350 TALVGASGAGKSTLLNLLLGFLAP---TQGEIRVNGIDLRDLSPEAWRKQISWVSQ-NPY 405
Query: 59 IAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
+ T+RE + A A+D EI A + + +
Sbjct: 406 LFAGTIRENILLARP--DASDE---------------------EIIAALDQAGL------ 436
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDS 178
++V GL DTV+G E G+SGGQ +R+ ++ P L +DE + LD+
Sbjct: 437 --LEFVPKPDGL----DTVIG-EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDA 489
Query: 179 STTFQIVKCVRNFVHQM--DATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
T QI+ + ++ T L+ + E D +V+L +G LV QG E+ E
Sbjct: 490 ETE-QIIL---QALQELAKQKTVLVITHR--LEDAADADRIVVLDNGRLVEQGTHEELSE 543
|
Length = 559 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-10
Identities = 53/237 (22%), Positives = 101/237 (42%), Gaps = 46/237 (19%)
Query: 652 FHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG- 710
+ S+ D+ + S L +++ G L A+VG G+GK++L+ L G
Sbjct: 3 VEDASFTWDSGEQETSF--------TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE 54
Query: 711 -RKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQV---TIEESLWFSANLRLPK 766
K G + + G I+ YV QE P + TI E++ F
Sbjct: 55 LEKL----SGSVSVPG---------SIA-YVSQE----PWIQNGTIRENILFGKPFD--- 93
Query: 767 EISKDQRHEFVEEVMSLVE-LDSLRHAL---VGSPGSFGLSTEQRKRLTIAVELVANPSI 822
++R+E V + +L L+ L +G G LS Q++R+++A + ++ I
Sbjct: 94 ----EERYEKVIKACALEPDLEILPDGDLTEIGEKGI-NLSGGQKQRISLARAVYSDADI 148
Query: 823 IFMDEPTSGLDAR-AAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
+D+P S +DA I + + +T + HQ +++ D+++++ G
Sbjct: 149 YLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 2e-10
Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 25/200 (12%)
Query: 687 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS------GYV 740
PG L+G +GAGKTT +L G T GD ++G +S IS GY
Sbjct: 1964 PGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGYC 2017
Query: 741 EQEDVHSPQVTIEESLWFSANLR-LPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGS 799
Q D +T E L+ A LR +P E +E+V + + SL +L +
Sbjct: 2018 PQFDAIDDLLTGREHLYLYARLRGVPAEE--------IEKVANW-SIQSLGLSLYADRLA 2068
Query: 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 859
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ + + + GR VV T H
Sbjct: 2069 GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
Query: 860 QPSIEIFEAF-DELLLMKRG 878
S+E EA L +M +G
Sbjct: 2129 --SMEECEALCTRLAIMVKG 2146
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 21/220 (9%)
Query: 668 KGIHEK--KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIK 722
K +H+ +L + G + ++G SG+GK+TL+ + G I +K
Sbjct: 4 KNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLK 63
Query: 723 ISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRL-PKEISKDQRHEFVEEVM 781
++ K + + G V Q+ P +T+ E N+ L P ++ + E E +
Sbjct: 64 LTDDKKNINELRQKVGMVFQQFNLFPHLTVLE------NITLAPIKVKGMSKAEAEERAL 117
Query: 782 SLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 841
L+E L P LS Q++R+ IA L NP ++ DEPTS LD V+
Sbjct: 118 ELLEKVGLADKADAYPAQ--LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVL 175
Query: 842 RAVRNTVDTGRTVVCTIHQPSIEI-F--EAFDELLLMKRG 878
+++ + G T+V H E+ F E D ++ M G
Sbjct: 176 DVMKDLAEEGMTMVVVTH----EMGFAREVADRVIFMDDG 211
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 56/230 (24%), Positives = 106/230 (46%), Gaps = 20/230 (8%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG---RKTGGYIEGDIKISG---YP 727
+ + L+N S F +T ++G++G+GK+T++ + G +TG I GD I
Sbjct: 23 EFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKI 82
Query: 728 KEQSTFARISGYVEQ-EDVHSPQVTIEESLWFSANLRLPKEISKDQRHEF--VEEVMSLV 784
KE + G V Q + Q TIE+ + F P + ++++ + V E++ LV
Sbjct: 83 KEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG-----PVNLGENKQEAYKKVPELLKLV 137
Query: 785 ELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA- 843
+L + SP F LS Q++R+ +A + + + + +DEPT GLD + +
Sbjct: 138 QLP--EDYVKRSP--FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLF 193
Query: 844 VRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQI 893
R + + ++ H ++ DE+++M G + G + S
Sbjct: 194 ERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVISIGSPFEIFSNQ 242
|
Length = 289 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 28/223 (12%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 731
+ L NVS + G A++G +G+GK+T+ +L G + G+IKI G +
Sbjct: 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ----SGEIKIDGITISKE 76
Query: 732 TFARIS---GYVEQE-DVHSPQVTIEESLWFS-ANLRLPKEISKDQRHEFVEEVMSLVEL 786
I G + Q D T+E+ + F N ++P + KD + ++V L
Sbjct: 77 NLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYL 136
Query: 787 DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRA 843
D L G Q++R+ IA L NP II DE TS LD + + M
Sbjct: 137 DKEPQNLSGG---------QKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVD 187
Query: 844 VRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
+R T +T++ H E A D++++ G++I GK
Sbjct: 188 LRKTRK--KTLISITHDMD-EAILA-DKVIVFS-EGKLIAQGK 225
|
Length = 271 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 2e-10
Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 25/230 (10%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 735
L N++ + G ++G +G+GK+TL L G R G + +G + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 736 ISGYVEQEDVHSPQV-----TIEESLWFSA-NLRLPK-EISKDQRHEFVEEVMSLVELDS 788
+ G V Q +P+ T+EE L F NL LP EI K V+ ++ + L+
Sbjct: 78 LVGIVFQ----NPETQFVGRTVEEDLAFGPENLCLPPIEIRK-----RVDRALAEIGLEK 128
Query: 789 LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV 848
RH SP + LS Q + + +A L P + DE TS LD + V+ ++
Sbjct: 129 YRHR---SPKT--LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLH 183
Query: 849 DTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYF 898
+ G+T+V H ++E D +++M RG V+ G V S + +
Sbjct: 184 EKGKTIVYITH--NLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTL 231
|
Length = 274 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 3e-10
Identities = 65/238 (27%), Positives = 101/238 (42%), Gaps = 50/238 (21%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWE---LDEFQVQRASAYIGQTDNHIA 60
+LG GSGKSTLL LAG D GSIT NG E LDE ++ + + Q H+
Sbjct: 369 ILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQ-RVHLF 424
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
T+R+ L A + S L ++ E+ + P+
Sbjct: 425 SGTLRDNLRLAN----PDASDEELWAALQQVGLEKLLESAPD------------------ 462
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
GL +T +G E R +SGG+++R+ ++ +DE + GLD T
Sbjct: 463 --------GL----NTWLG-EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPIT 509
Query: 181 TFQIVKCVRNFVHQMDATALMAL--LQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
Q++ F H T LM L+ E D +++L +G ++ +G AE+L
Sbjct: 510 ERQVLA--LLFEHAEGKTLLMVTHRLRG----LERMDRIIVLDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-10
Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 16/209 (7%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGD-IKISGYPKEQSTFA 734
L +S G ++G SG+GK+TL +L G T G + D + + +EQ
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQ--LG 409
Query: 735 RISGYVEQEDVHSPQVTIEESLW-FSANLRLPKEISKDQRHEFVEEVMSLVE-LDSLRHA 792
R GY+ Q DV TI E++ F K I + E ++ L + D+
Sbjct: 410 RHIGYLPQ-DVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTR--- 465
Query: 793 LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGR 852
+G G+ LS QR+R+ +A L +P ++ +DEP S LD+ A + A+ G
Sbjct: 466 -IGEGGA-TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGG 523
Query: 853 TVVCTIHQPSIEIFEAFDELLLMKRGGRV 881
TVV H+PS + D++L+++ GR+
Sbjct: 524 TVVVIAHRPS--ALASVDKILVLQ-DGRI 549
|
Length = 580 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 3e-10
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 21/206 (10%)
Query: 688 GVLTALVGSSGAGKTTLMDVL-------AGRKTGGYIEGDIKISGYPKEQSTFARIS-GY 739
G + ++G SG+GK+T + +L AG+ +I+G+ + P E R G
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVELREVRRKKIGM 75
Query: 740 VEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGS 799
V Q+ P +TI ++ L + +R E E++ LV L+ H P
Sbjct: 76 VFQQFALFPHMTILQNTSLGPEL---LGWPEQERKEKALELLKLVGLEEYEHRY---PDE 129
Query: 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTI 858
LS ++R+ +A L A P I+ MDE S LD + ++ T +T+V
Sbjct: 130 --LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFIT 187
Query: 859 HQPSIEIFEAFDELLLMKRGGRVIYG 884
H E D +++MK G V G
Sbjct: 188 HDLD-EAIRIGDRIVIMKAGEIVQVG 212
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 4e-10
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 41/195 (21%)
Query: 667 SKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 726
S ++ L L NVS +PG LVG +GAGK+TL+ +LAG G++
Sbjct: 10 SLAYGDRPL--LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG 65
Query: 727 PKEQSTFARISGYVEQEDVHSPQVTIEESLW--FSANLRLPKEISK---------DQRHE 775
+ GY+ QE P+ T+ + + F L E+ + D+
Sbjct: 66 LRV--------GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLA 117
Query: 776 FVEEVMSLVELDSLRH----ALVGSPGSFGLSTE----------QRKRLTIAVELVANPS 821
+E ++ ++ +L AL+G G E R+R+ +A L+ P
Sbjct: 118 ELEALLEELDGWTLEARAEEALLG----LGFPDEDRPVSSLSGGWRRRVALARALLEEPD 173
Query: 822 IIFMDEPTSGLDARA 836
++ +DEPT+ LD +
Sbjct: 174 LLLLDEPTNHLDLES 188
|
Length = 530 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-10
Identities = 52/174 (29%), Positives = 79/174 (45%), Gaps = 14/174 (8%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAG-RKTGGYIEGDIKISG 725
+ + L N++ +TAL+G SG GK+TL+ D++ G R G + I
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72
Query: 726 YPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVE 785
+ R G V Q+ P +I +++ + RL K + E VEE +
Sbjct: 73 KKIDVVELRRRVGMVFQKPNPFPM-SIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAA 129
Query: 786 L-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838
L D ++ L S GLS Q++RL IA L P ++ +DEPTS LD A
Sbjct: 130 LWDEVKDRLHDSA--LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (149), Expect = 5e-10
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVL--AGRKTGGY-IEGDIKISGYP----KE 729
+L VS F +T+L+G +G+GKTT + L K GY GD+ + G ++
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 730 QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL-DS 788
F R G + Q P ++ L A +R K + + + + ++ V L D+
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVL---AGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 789 LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV 848
++ L SP F LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 849 DTGRTVVCT 857
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 6e-10
Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 36/224 (16%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKEQ---ST 732
L NVS PG A++G G+GK+TL+ +L G Y EG + + G Q +
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL----YQPTEGSVLLDGVDIRQIDPAD 536
Query: 733 FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL--- 789
R GYV Q+ F LR I+ + EE++ EL +
Sbjct: 537 LRRNIGYVPQDPR-----------LFYGTLR--DNIALGAPYADDEEILRAAELAGVTEF 583
Query: 790 --RHA-----LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 842
RH +G G LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 584 VRRHPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD 642
Query: 843 AVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
++ + G+T+V H+ S + + D +++M G V G K
Sbjct: 643 RLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPK 683
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 7e-10
Identities = 53/188 (28%), Positives = 83/188 (44%), Gaps = 20/188 (10%)
Query: 686 SPGVLTALVGSSGAGKTTLMDV--LAGRKTGGYIE-GDIKISG---YPKEQSTFARIS-- 737
PG + A++G SG+GKTTL+ L + G I GDI I +++ ++
Sbjct: 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQH 86
Query: 738 -GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
G+V Q P T+ E++ + P + + + E L+ + L G
Sbjct: 87 VGFVFQNFNLFPHRTVLENI-----IEGPVIVKGEPKEEATARARELLA----KVGLAGK 137
Query: 797 PGSFG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTV 854
S+ LS Q++R+ IA L P +I DEPTS LD V+ +R RT+
Sbjct: 138 ETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTM 197
Query: 855 VCTIHQPS 862
V H+ S
Sbjct: 198 VIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 7e-10
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 19/192 (9%)
Query: 671 HEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYP 727
H K+Q L VS + G + L+G++GAGKTTL+ L G R T G I D K I+ +
Sbjct: 14 HYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQ 73
Query: 728 KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLV-EL 786
+ ++ E V S ++T+EE+L +DQ E ++ V L L
Sbjct: 74 TAKIMREAVAIVPEGRRVFS-RMTVEENLAMGGFF-----AERDQFQERIKWVYELFPRL 127
Query: 787 DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN 846
R G+ +S +++ L I L++ P ++ +DEP+ GL A I+++ + +
Sbjct: 128 HERRIQRAGT-----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFD 178
Query: 847 TVDTGRTVVCTI 858
T++ R TI
Sbjct: 179 TIEQLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 7e-10
Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 22/179 (12%)
Query: 675 LQLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG-- 725
L +S + A +G SG GK+T + D++ + +EG+I+I G
Sbjct: 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRN 71
Query: 726 -YPK--EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMS 782
Y K + + G V Q P+ +I E++ + LR+ + VEE +
Sbjct: 72 IYDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLK 128
Query: 783 LVEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
L D ++ L S +F LS Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 129 GAALWDEVKDKLKES--AFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
|
Length = 250 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 56/233 (24%), Positives = 94/233 (40%), Gaps = 52/233 (22%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIG---QTDN 57
M LLGP G+GK+TL+ LA SG+I +G ++ + Q Q+ IG Q
Sbjct: 27 MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLK-QPQKLRRRIGYLPQEFG 82
Query: 58 HIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKH 117
TVRE LD+ A +G + +
Sbjct: 83 VYPNFTVREFLDYIAWLKGIPSK------------EVKAR-------------------- 110
Query: 118 SVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
D VL ++ L + + +SGG ++RV + +VG L +DE + GLD
Sbjct: 111 ---VDEVLELVNL-----GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD 162
Query: 178 SSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELF-DDLVLLSDGYLVYQG 229
+ ++ RN + ++ ++ L E E + + +L+ G LV++G
Sbjct: 163 PE---ERIR-FRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-09
Identities = 55/240 (22%), Positives = 104/240 (43%), Gaps = 54/240 (22%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWE---LDEFQVQRASAYIGQTDNHIA 60
++G GSGKSTLL L G GS+ +G + +D ++R Y+ Q D +
Sbjct: 496 IIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQ-DPRLF 551
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
T+R+ + A A+D ++A+ + G
Sbjct: 552 YGTLRDNIALGAP--YADDE------------------------EILRAAELAG-----V 580
Query: 121 TDYV-LNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSS 179
T++V + GLD+ +G E R +SGGQ++ V ++ L +DE ++ +D+
Sbjct: 581 TEFVRRHPDGLDM----QIG-ERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNR 635
Query: 180 TTFQIVKCVRNFVHQMD---ATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
+ + ++ ++ T +LL +L D ++++ +G +V GP+ +VLE
Sbjct: 636 SEERFKDRLKRWLAGKTLVLVTHRTSLL-------DLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 20/169 (11%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKE 729
K +Q L+NVS G + ++G+SGAGK+TL+ ++L +G I ++
Sbjct: 16 KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNS 75
Query: 730 QSTFAR--ISGYVEQEDVHSPQVTIEESLWFSANLRLPKEI---SKDQRHEFVEEVMSLV 784
+ T AR I + ++ S + N+ LP E+ KD+ V E+++LV
Sbjct: 76 ELTKARRQIGMIFQHFNLLSSRTVFG-------NVALPLELDNTPKDEIKRKVTELLALV 128
Query: 785 ELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
L + P + LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 129 GLGDKHDSY---PSN--LSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-09
Identities = 52/170 (30%), Positives = 79/170 (46%), Gaps = 28/170 (16%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTT----LMDVLAGRKTGGYIEGDIKISGYPKEQSTF 733
+ N+S PG LVG SG+GK+T L+ ++ + G+I G P
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHNLNR 354
Query: 734 ARISGYVEQ-----EDVHS---PQVTIEESLWFSANLRL-PKEISKDQRHEFVEEVMSLV 784
++ + +D +S P++ + + + LR+ +S QR + V VM V
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQII--EEGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 785 ELD-SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
LD RH P F S QR+R+ IA L+ PS+I +DEPTS LD
Sbjct: 413 GLDPETRHRY---PAEF--SGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 23/239 (9%)
Query: 653 HNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRK 712
++++ T +K + +L+NVS G L+G SG GK+TL +L G +
Sbjct: 6 RDVTHTYRTGGLFGAKQ----RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61
Query: 713 TGGYIEGDIKISGYP------KEQSTFARISGYVEQEDVHS--PQVTIEESLWFSANLRL 764
+G + G K++ F R V Q+ + P++T+ + + LR
Sbjct: 62 KPA--QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRH 117
Query: 765 PKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIF 824
+ + ++ + E++ +V L S A LS Q +R+ IA L P +I
Sbjct: 118 LTSLDESEQKARIAELLDMVGLRS-EDADKLPR---QLSGGQLQRINIARALAVKPKLIV 173
Query: 825 MDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAF-DELLLMKRGGRVI 882
+DE S LD A+++ +R T I + + ++F + +M G+++
Sbjct: 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITH-DLRLVQSFCQRVAVMD-KGQIV 230
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 24/205 (11%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVL-------AGRKTGGYIEGDIKISG 725
+L +L NVS + G AL G SGAGK+TL+ L +GR + + ++
Sbjct: 19 VRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQ 78
Query: 726 YPKEQSTFARIS--GYVEQEDVHSPQVT----IEESLWFSANLRLPKEISKDQRHEFVEE 779
+ R GYV Q P+V+ + E L L + + ++ E
Sbjct: 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPL-------LERGVPREAARARARE 131
Query: 780 VMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 839
+++ + + L P +F S +++R+ IA +A+ I+ +DEPT+ LDA +
Sbjct: 132 LLARLNIPERLWHL--PPATF--SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQV 187
Query: 840 VMRAVRNTVDTGRTVVCTIHQPSIE 864
V+ + G ++ H +
Sbjct: 188 VVELIAEAKARGAALIGIFHDEEVR 212
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 39/221 (17%)
Query: 670 IHEKK----LQLLSNVSGIFSPGVLTALVGSSGAGKTTL---MDVLAGRKTGG--YIEGD 720
I KK L+ L NVS + G A++G +G+GKTT ++ L TG +I D
Sbjct: 11 IFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKD 70
Query: 721 IKISGYPKE-----------QSTFARIS---------GYVEQ-EDVHSPQVTIEESLWFS 759
K KE ++ F +I G V Q + + TIE+ + F
Sbjct: 71 EKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFG 130
Query: 760 A-NLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVA 818
++ + KE +K + +++E LV LD L SP F LS Q++R+ +A L
Sbjct: 131 PVSMGVSKEEAKKRAAKYIE----LVGLD--ESYLQRSP--FELSGGQKRRVALAGILAM 182
Query: 819 NPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 859
P + DEPT+GLD + ++ N G+T++ H
Sbjct: 183 EPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 51/230 (22%), Positives = 93/230 (40%), Gaps = 25/230 (10%)
Query: 670 IHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY--- 726
+ +K++ L V+ G + A++G +G+GK+TL +AG + G I G
Sbjct: 10 VEDKEI--LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67
Query: 727 ---PKEQSTFARISGYVE-QEDVHSPQVTIEESLWFSANLRLP----KEISKDQRHEFVE 778
P E+ AR ++ Q P V+ E L + N R + + + ++
Sbjct: 68 ELEPDER---ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLK 124
Query: 779 EVMSLVELD-SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 837
++L+ +D + V + G S ++KR I + P + +DE SGLD A
Sbjct: 125 AKLALLGMDEEFLNRSV----NEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDAL 180
Query: 838 AIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAF--DELLLMKRGGRVIYGG 885
IV + + R+ + H + D + ++ G V G
Sbjct: 181 KIVAEGINRLREPDRSFLIITHYQ--RLLNYIKPDYVHVLLDGRIVKSGD 228
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 1e-09
Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 20/214 (9%)
Query: 675 LQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQST 732
L LSN++ G LT +VG G GK++L+ + G + G + K P ++T
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEAT 73
Query: 733 FARISGYVEQEDVHSP---QVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLV-ELDS 788
+R V P T+EE++ F + QR++ V + SL ++D
Sbjct: 74 RSRNRYSVAYA-AQKPWLLNATVEENITFGSPF-------NKQRYKAVTDACSLQPDIDL 125
Query: 789 LRHALVGSPGSFG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA--V 844
L G G LS QR+R+ +A L N +I+F+D+P S LD + +M+ +
Sbjct: 126 LPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGIL 185
Query: 845 RNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
+ D RT+V H+ ++ D ++ MK G
Sbjct: 186 KFLQDDKRTLVLVTHK--LQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 55/212 (25%), Positives = 83/212 (39%), Gaps = 55/212 (25%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNK--SGSITYNGWELDEFQVQRASAY----IG- 53
++GP GSGKST LL L G LD K SG + NG +L + + + IG
Sbjct: 33 FVAIVGPSGSGKST-LLNLLGGLD----KPTSGEVLINGKDLTKLSEKELAKLRRKKIGF 87
Query: 54 --QTDNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASS 111
Q N + +LTV E ++ G + R
Sbjct: 88 VFQNFNLLPDLTVLENVELPLLIAG-------------KSAGRRKRA------------- 121
Query: 112 VGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDE 171
+ +L VLGL+ SE+ SGGQ++RV ++ K + DE
Sbjct: 122 ---------AEELLEVLGLEDRLLKKKPSEL----SGGQQQRVAIARALINNPKIILADE 168
Query: 172 ISTG-LDSSTTFQIVKCVRNFVHQMDATALMA 202
TG LDS T ++++ +R + T +M
Sbjct: 169 P-TGNLDSKTAKEVLELLRELNKERGKTIIMV 199
|
Length = 226 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 56/211 (26%), Positives = 90/211 (42%), Gaps = 27/211 (12%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFA 734
L +SG G + LVG +GAGK+TL+ +AG +G G I+ +G P E + A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELA 71
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
R Y+ Q+ + + W L P + R E + +V + LD
Sbjct: 72 RHRAYLSQQQTPPFAMPV----WHYLTLHQPDK----TRTELLNDVAGALALDDKLGRST 123
Query: 795 G--SPGSFGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDARAAAIVMRAVRNT 847
S G + QR RL + + ANP+ ++ +DEP + LD + + R +
Sbjct: 124 NQLSGGEW-----QRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178
Query: 848 VDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
G +V + H + + A L+KRG
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-09
Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 32/221 (14%)
Query: 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVL 708
+T N+S + TP LLS ++ PG + G SGAGKT+L+ L
Sbjct: 392 GITLENLS--LRTPDGQ----------TLLSELNFEVRPGERLLITGESGAGKTSLLRAL 439
Query: 709 AGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEI 768
AG + G I P + + ++ Q + PQ T+ E+L P
Sbjct: 440 AG--LWPWGSGRI---SMPADSALL-----FLPQR-PYLPQGTLREAL------CYP-NA 481
Query: 769 SKDQRHEFVEEVMSLVELDSLRHALVG-SPGSFGLSTEQRKRLTIAVELVANPSIIFMDE 827
+ D + V+ V L L L LS +++RL A L+ P +F+DE
Sbjct: 482 APDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDE 541
Query: 828 PTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEA 868
TS LD + + ++ + TV+ H+P++ F +
Sbjct: 542 ATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNFHS 581
|
Length = 604 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 68/214 (31%), Positives = 98/214 (45%), Gaps = 29/214 (13%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGYPKEQST 732
LS + PG + ALVG +GAGK+T+M VL G + G I ++ +G PK S
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG-PK-SSQ 77
Query: 733 FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISK-----DQRHEFVEEVMSLVELD 787
A I + QE PQ+TI E N+ L +E D + + E L L
Sbjct: 78 EAGIG-IIHQELNLIPQLTIAE------NIFLGREFVNRFGRIDWKKMYAEADKLLARL- 129
Query: 788 SLRHA---LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 844
+LR + LVG LS +++ + IA L +I MDEPT L + R +
Sbjct: 130 NLRFSSDKLVGE-----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVI 184
Query: 845 RNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
R GR +V H+ EIFE D++ + + G
Sbjct: 185 RELKSQGRGIVYISHRLK-EIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 20/179 (11%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTL------MDVLAGRKTGGYIEGDIKISGY- 726
K + L++VS F P +TAL+G SG+GK+TL M+ L T I G I +G+
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHN 73
Query: 727 ---PKEQSTFARIS-GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMS 782
P+ + R G V Q+ P ++I E++ + LRL K E VE+ +
Sbjct: 74 IYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRLKGIKDKQVLDEAVEKSLK 130
Query: 783 LVEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
+ D ++ L S + GLS Q++R+ IA L +P II +DEPTS LD +A +
Sbjct: 131 GASIWDEVKDRLHDS--ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEG-DIKISGYPKEQST 732
L V+ G +L+G SG GK+TL+++++G + T G +EG I G P
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-PDRMVV 59
Query: 733 FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHA 792
F S P +T+ E++ + + LP ++SK +R VEE ++LV L A
Sbjct: 60 FQNYSLL--------PWLTVRENIALAVDRVLP-DLSKSERRAIVEEHIALV---GLTEA 107
Query: 793 LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 834
PG LS ++R+ IA L P ++ +DEP LDA
Sbjct: 108 ADKRPGQ--LSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 55/172 (31%), Positives = 85/172 (49%), Gaps = 18/172 (10%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPK 728
EKK L NV+ G L+G +G+GK+TL+ L G +G I + I+
Sbjct: 19 EKKA--LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKV 76
Query: 729 EQSTFARISGYVEQEDVHSPQV---TIEESLWFS-ANLRLPKEISKDQRHEFVEEVMSLV 784
+ S + G V Q + Q+ TIE+ + F NL L S+++ V+ M++V
Sbjct: 77 KLSDIRKKVGLVFQYPEY--QLFEETIEKDIAFGPINLGL----SEEEIENRVKRAMNIV 130
Query: 785 ELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 836
LD + SP F LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 131 GLDYEDYK-DKSP--FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 58/235 (24%), Positives = 96/235 (40%), Gaps = 58/235 (24%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNK--SGSITYNGWELDEFQVQRASAY----IG- 53
++GP GSGKST LL + G LD + SG + +G ++ + + +A+ IG
Sbjct: 32 FVAIVGPSGSGKST-LLNILGGLD----RPTSGEVRVDGTDISKLSEKELAAFRRRHIGF 86
Query: 54 --QTDNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASS 111
Q+ N + +LT E ++ G +KER R
Sbjct: 87 VFQSFNLLPDLTALENVELPLLLAG-------------VPKKERRER------------- 120
Query: 112 VGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDE 171
+ +L +GL + SE+ SGGQ++RV + K + DE
Sbjct: 121 ---------AEELLERVGLGDRLNHYP-SEL----SGGQQQRVAIARALANDPKIILADE 166
Query: 172 ISTG-LDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYL 225
TG LDS T ++++ +R + T ++ PE E D ++ L DG +
Sbjct: 167 -PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD--PELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 3e-09
Identities = 65/265 (24%), Positives = 100/265 (37%), Gaps = 60/265 (22%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAY---IGQTDN 57
+ LLGP G+GKSTLL +AG + +G I NG L F V + +G
Sbjct: 30 LVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVL--FDVSNLAVRDRKVGFVFQ 84
Query: 58 HIA---ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGG 114
H A +TV + + F + + EI A + +
Sbjct: 85 HYALFPHMTVADNIAFGLKVRKER-------------------PSEAEIRA--RVEEL-- 121
Query: 115 KKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE-MIVGPRKTLFMDEIS 173
L L + +SGGQ++RV + V P K L +DE
Sbjct: 122 ---------------LRLVQLEGLADRYPAQLSGGQRQRVALARALAVEP-KVLLLDEPF 165
Query: 174 TGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233
LD+ ++ + +R ++ T + + E EL D +V+L+ G + GP E
Sbjct: 166 GALDAKVRKELRRWLRKLHDRLGVTTVF-VTHDQEEALELADRVVVLNQGRIEQVGPPDE 224
Query: 234 VLEFFESLGFRLPPRKGVADFLQEV 258
V + P + VA FL EV
Sbjct: 225 VYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 3e-09
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTL---MDVLAGRKTGGYIEGDIKISGYP--KEQ 730
L N++ +TA++G SG GK+T ++++ + G++ +G K +
Sbjct: 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85
Query: 731 STFARIS---GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL- 786
+ G V Q+ PQ + + R+ +K + E VE+ + V L
Sbjct: 86 VDLVELRKNIGMVFQKGNPFPQSIFDNVAY---GPRIHGTKNKKKLQEIVEKSLKDVALW 142
Query: 787 DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
D ++ L + LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 143 DEVKDRL--HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 3e-09
Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 30/241 (12%)
Query: 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDV 707
+++ F N+ Y M KG L N+S G ALVG +G+GK+TLM
Sbjct: 1 MSIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQH 52
Query: 708 LAGRKTGGYIEGDIKISGYP-------KEQSTFARISGYVEQ-EDVHSPQVTIEESLWFS 759
G I I+GY K + V Q + + T+ + + F
Sbjct: 53 FNALLKPS--SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG 110
Query: 760 A-NLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVG-SPGSFGLSTEQRKRLTIAVELV 817
N ++ +K++ +++++V L L+ SP F LS Q +R+ IA +
Sbjct: 111 PKNFGFSEDEAKEKALKWLKKV-------GLSEDLISKSP--FELSGGQMRRVAIAGVMA 161
Query: 818 ANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKR 877
P I+ +DEP +GLD +M+ ++ G TV+ H ++ E D++L+++
Sbjct: 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH 220
Query: 878 G 878
G
Sbjct: 221 G 221
|
Length = 287 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 14/172 (8%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAG-RKTGGYIEGDIKISGYP 727
L +++ +TAL+G SG GK+TL+ D++ G R TG + I
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79
Query: 728 KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL- 786
+ R G V Q P+ +I E++ + R+ E +K VE+ + L
Sbjct: 80 ADVVALRRKIGMVFQRPNPFPK-SIYENVAYGP--RIHGEKNKKTLDTIVEKSLKGAALW 136
Query: 787 DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838
D ++ L S + LS Q++RL IA L NP +I MDEP S LD A A
Sbjct: 137 DEVKDRLHDS--ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 53/184 (28%), Positives = 86/184 (46%), Gaps = 15/184 (8%)
Query: 689 VLTALVGSSGAGKTTLM---DVLAGRKTGGYIEGDIKISG---YPKEQSTFA--RISGYV 740
+ AL+G SG GK+TL+ + L +EG++++ G Y + R G V
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 741 EQEDVHSPQVTIEESLWFSANLRLPKEI-SKDQRHEFVEEVMSLVEL-DSLRHALVGSPG 798
Q P +TI +++ + ++L + SK + E VE + L D ++ L P
Sbjct: 91 FQYPNPFPHLTIYDNV--AIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPS 148
Query: 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTI 858
+ LS QR+RL IA L P I+ MDEPT+ +D A + + + T+V
Sbjct: 149 N--LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEYTIVLVT 205
Query: 859 HQPS 862
H P+
Sbjct: 206 HSPA 209
|
Length = 253 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 53/237 (22%), Positives = 86/237 (36%), Gaps = 57/237 (24%)
Query: 2 TLLLGPPGSGKSTLLLALAG--KLDGNLNKSGSITYNGWELDEFQV-------QRASAYI 52
T + G G+GKSTLL +AG K DG G+I NG L + + QR +
Sbjct: 26 TGIFGASGAGKSTLLRCIAGLEKPDG-----GTIVLNGTVLFDSRKKINLPPQQRKIGLV 80
Query: 53 GQTDNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSV 112
Q L VRE L F + + +E I + E+ + +
Sbjct: 81 FQQYALFPHLNVRENLAFGLK---------------RKRNREDRISVD-ELLDLLGLDHL 124
Query: 113 GGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEI 172
+ L SGG+K+RV + + L +DE
Sbjct: 125 LNRY----------PAQL----------------SGGEKQRVALARALAAQPELLLLDEP 158
Query: 173 STGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229
+ LD + Q++ ++ ++ + + E L D +V++ DG L Y G
Sbjct: 159 FSALDRALRLQLLPELKQIKKNLNIPVIF-VTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 4e-09
Identities = 56/206 (27%), Positives = 85/206 (41%), Gaps = 21/206 (10%)
Query: 686 SPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI---EGDIKISGYPKEQSTFARISGYVEQ 742
G L L+G +GAGKTTL+ R G I +G +K++G + R GYV Q
Sbjct: 4 DKGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQ 56
Query: 743 EDVHSPQVTIE-ESLWFSANLRLPKEISKDQRHEF--VEEVMSLVELDSLRHALVGSPGS 799
+ I S + + +F V + + V L L VG
Sbjct: 57 RHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE--- 113
Query: 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 859
LS QR+R+ +A L PS++ +DEP +GLD ++ G ++ T H
Sbjct: 114 --LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
Query: 860 QPSIEIFEAFDELLLMKRGGRVIYGG 885
+ D ++L+ GRVI G
Sbjct: 172 D-LAQAMATCDRVVLLN--GRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 47/185 (25%), Positives = 75/185 (40%), Gaps = 50/185 (27%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPK 728
Q L ++ +TAL+G SG GK+T + D++ K IEG++ + G
Sbjct: 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG--- 69
Query: 729 EQSTFARISGYVEQEDVHSPQVTIEE-----SLWFSANLRLPKEI--------------S 769
+D++ + + + + F P I
Sbjct: 70 --------------QDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKD 115
Query: 770 KDQRHEFVEEVMSLVEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEP 828
K + E VE+ + L D ++ L S + GLS Q++RL IA L P ++ MDEP
Sbjct: 116 KKKLDEIVEKSLKGAALWDEVKDRLKKS--ALGLSGGQQQRLCIARALAVEPEVLLMDEP 173
Query: 829 TSGLD 833
TS LD
Sbjct: 174 TSALD 178
|
Length = 250 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 4e-09
Identities = 54/153 (35%), Positives = 79/153 (51%), Gaps = 18/153 (11%)
Query: 694 VGSSGAGKTTLMDVLAGRK--TGG--YIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQ 749
VG SG GK+TL+ ++AG + T G +I G+ +++ P + R G V Q P
Sbjct: 35 VGPSGCGKSTLLRMIAGLEDITSGDLFI-GEKRMNDVPPAE----RGVGMVFQSYALYPH 89
Query: 750 VTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKR 809
+++ E++ F L K+ +QR V EV+ L H L P + LS QR+R
Sbjct: 90 LSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA------HLLDRKPKA--LSGGQRQR 141
Query: 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 842
+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 4e-09
Identities = 57/216 (26%), Positives = 95/216 (43%), Gaps = 35/216 (16%)
Query: 686 SPGV-LTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY-----------PKEQSTF 733
P +TAL G SG+GKT+L++++AG EG I+++G P E+
Sbjct: 21 LPARGITALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEK--- 75
Query: 734 ARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHAL 793
R GYV Q+ P T+ +L + + + Q LV L + H L
Sbjct: 76 -RRIGYVFQDARLFPHYTVRGNLRYGM-----WKSMRAQ-------FDQLVALLGIEHLL 122
Query: 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRAVRNTVDTGR 852
PG+ LS +++R+ I L+ P ++ MDEP + LD R I+ R +
Sbjct: 123 DRYPGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINI 180
Query: 853 TVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLG 888
++ H E+ D +++++ G+V G L
Sbjct: 181 PILYVSHSLD-EVLRLADRVVVLEN-GKVKASGPLE 214
|
Length = 352 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 4e-09
Identities = 61/221 (27%), Positives = 93/221 (42%), Gaps = 28/221 (12%)
Query: 675 LQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQST 732
+ L +V+ PG + AL+G +GAGK+TLM VL+G T G I I Y K
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI--TINNINYNKLDHK 75
Query: 733 FARISG--YVEQEDVHSPQVTIEESLWFSANLRLPKE-------ISKDQRHEFVEEVMSL 783
A G + QE ++T+ E+L+ R + I + ++
Sbjct: 76 LAAQLGIGIIYQELSVIDELTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLR 132
Query: 784 VELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA---IV 840
V L V + LS ++ L IA L+ + +I MDEPTS L + ++
Sbjct: 133 VGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187
Query: 841 MRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRV 881
M +R G +V H+ + EI D +MK G V
Sbjct: 188 MNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDGSSV 224
|
Length = 510 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 5e-09
Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 29/212 (13%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 737
L +VS G T++VG +G+GK+T+ ++ G + G+I + F ++
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLR 82
Query: 738 GYV-------EQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL---- 786
++ + + V S ++ + F + D+ H V E + V++
Sbjct: 83 KHIGIVFQNPDNQFVGS---IVKYDVAFGLENHA---VPYDEMHRRVSEALKQVDMLERA 136
Query: 787 DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN 846
D +AL G Q++R+ IA L NPS+I +DE TS LD A ++ VR
Sbjct: 137 DYEPNALSGG---------QKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRK 187
Query: 847 TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
+ +I E EA D +++M +G
Sbjct: 188 VKSEHNITIISITHDLSEAMEA-DHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 6e-09
Identities = 66/272 (24%), Positives = 111/272 (40%), Gaps = 59/272 (21%)
Query: 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDE-----FQVQRASAYIGQT- 55
T +LG G+GKSTL L G L + SG I ++G +D +++ + + Q
Sbjct: 35 TAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDP 91
Query: 56 DNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGK 115
DN + +V + + F A +L E E R +D +K + +
Sbjct: 92 DNQLFSASVYQDVSFGAV-------------NLKLPEDEVRKR----VDNALKRTGIEHL 134
Query: 116 KHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTG 175
K + +S GQKKRV ++V K L +DE + G
Sbjct: 135 KDKPT-----------------------HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAG 171
Query: 176 LDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELF-DDLVLLSDGYLVYQGPRAEV 234
LD +I+K + ++ T ++A + L+ D++ ++ +G ++ QG EV
Sbjct: 172 LDPMGVSEIMKLLVEMQKELGLTIIIATHD--IDIVPLYCDNVFVMKEGRVILQGNPKEV 229
Query: 235 L---EFFESLGFRLPPRKGVADFLQEVTSKKD 263
E + RL PR G L E+ +KD
Sbjct: 230 FAEKEMLRKVNLRL-PRIG---HLMEILKEKD 257
|
Length = 283 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 6e-09
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 23/207 (11%)
Query: 693 LVGSSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGY---PKEQSTFARISGYVEQED 744
+VG+SGAGKTTL ++AG T G + GD + P + R G + QE
Sbjct: 315 IVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY 374
Query: 745 VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804
P T+ ++L + L LP E+++ + M + + L P LS
Sbjct: 375 DLYPHRTVLDNLTEAIGLELPDELAR--MKAVITLKMVGFDEEKAEEILDKYPDE--LSE 430
Query: 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV-----DTGRTVVCTIH 859
+R R+ +A L+ P I+ +DEPT +D I V +++ + +T + H
Sbjct: 431 GERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSILKAREEMEQTFIIVSH 486
Query: 860 QPSIEIFEAFDELLLMKRGGRVIYGGK 886
+ + D LM R G+++ G
Sbjct: 487 DMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 6e-09
Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 44/223 (19%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGR---KTGGYIE-GDIKISGYPKEQ--S 731
L N+S PG +VG +G+GK++L+ L R + G I + IS S
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGLHDLRS 78
Query: 732 TFARISGYVEQEDVHSPQVTIEESLWFSANLRL---PKEISKDQRHEFVEEVMSLVELDS 788
+ I PQ + + FS +R P D EE+ +E
Sbjct: 79 RISII-----------PQ----DPVLFSGTIRSNLDPFGEYSD------EELWQALERVG 117
Query: 789 LRHALVGSPGSFG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 839
L+ + PG LS QR+ L +A L+ I+ +DE T+ +D A+
Sbjct: 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177
Query: 840 VMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882
+ + +R TV+ H+ ++ D +L++ + GRV+
Sbjct: 178 IQKTIR-EAFKDCTVLTIAHR--LDTIIDSDRILVLDK-GRVV 216
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 7e-09
Identities = 55/240 (22%), Positives = 91/240 (37%), Gaps = 48/240 (20%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
+T L+GP G+GKSTLL A+ G L SG I G + + + + Y+ Q +
Sbjct: 32 ITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDR 88
Query: 61 E--LTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
+TV++ + G RL K+ ++D ++ + +
Sbjct: 89 SFPITVKDVV--LLGRYG-------KKGWFRRLNKKDK----EKVDEALERVGMEDLRDR 135
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDS 178
+G +SGGQK+RV + L +DE TG+D
Sbjct: 136 ------------------QIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDV 172
Query: 179 STTFQIVKCVRNFVHQMDATALMAL--LQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
+ +I ++ + T LM L FD ++ L+ L+ GP EVL
Sbjct: 173 AGQKEIYDLLKELRQEG-KTVLMVTHDLGL---VMAYFDRVICLNRH-LIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 7e-09
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 16/179 (8%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQST-FARISGYVEQEDVH 746
G + A++G SGAGK+TL++++AG G IK++ + R + QE+
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSMLFQENNL 81
Query: 747 SPQVTIEESLWFSAN--LRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804
+T+ +++ + L+L E + E V + V + L P LS
Sbjct: 82 FAHLTVRQNIGLGLHPGLKLNAE-----QQEKVVDAAQQVGIADYLDRL---PEQ--LSG 131
Query: 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPS 862
QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H S
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 7e-09
Identities = 60/208 (28%), Positives = 89/208 (42%), Gaps = 21/208 (10%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 735
L +VS G A+VG +G+GK+TL +L G G I + G + T
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 736 IS---GYVEQE-DVHSPQVTIEESLWFS-ANLRLPKEISKDQRHEFVEEVMSLVELDSLR 790
+ G V Q D T+++ + F N+ +P R E VE V + +
Sbjct: 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVP-------REEMVERVDQALRQVGME 131
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT 850
L P LS Q++R+ IA L P II +DE TS LD R V+ VR +
Sbjct: 132 DFLNREPHR--LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ 189
Query: 851 GRTVVCTIHQPSIEIFEAFDELLLMKRG 878
V +I E +A D +++M +G
Sbjct: 190 KGITVLSITHDLDEAAQA-DRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 7e-09
Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 29/211 (13%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR 735
+L NVS G +VG +GAGK+TL +LA + EG I+I G
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEAEEGKIEIDG--------ID 71
Query: 736 ISGYVEQEDVHSPQVTI--EESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHAL 793
IS + ED+ S +TI ++ FS +R + D E+ +E + AL
Sbjct: 72 IST-IPLEDLRS-SLTIIPQDPTLFSGTIRS----NLDPFDEYSDE--------EIYGAL 117
Query: 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRT 853
S G LS QR+ L +A L+ P ++ +DE T+ +D A++ + +R T T
Sbjct: 118 RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNST 176
Query: 854 VVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
++ H+ I +D++L+M G Y
Sbjct: 177 ILTIAHRLRTII--DYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 7e-09
Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 16/193 (8%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKEQ 730
Q+L N+ G + ++G SG+GK+TL+ + L +G I +K++ ++
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDE 72
Query: 731 STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEI---SKDQRHEFVEEVMSLVELD 787
+ +G V Q+ P +T E++ F P + SK++ + E+++ V L
Sbjct: 73 RLIRQEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEAEKQARELLAKVGLA 127
Query: 788 SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNT 847
H P LS Q++R+ IA L P ++ DEPTS LD V++ +++
Sbjct: 128 ERAHHY---PSE--LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDL 182
Query: 848 VDTGRTVVCTIHQ 860
+ G T+V H+
Sbjct: 183 AEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 8e-09
Identities = 66/263 (25%), Positives = 101/263 (38%), Gaps = 61/263 (23%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNK--SGSITYNGWELDEFQVQRASAYIGQTDNH 58
+ LLGP GSGKSTLL +AG L + SG I NG + + IG H
Sbjct: 28 LVALLGPSGSGKSTLLRIIAG-----LEQPDSGRIRLNGQDATRVHARDRK--IGFVFQH 80
Query: 59 IA---ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGK 115
A LTVR+ + F LE +H P +I A
Sbjct: 81 YALFKHLTVRDNIAFG-------------------LEIRKH--PKAKIKA---------- 109
Query: 116 KHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTG 175
+ +L ++ L +G +SGGQ++RV + + L +DE
Sbjct: 110 ----RVEELLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGA 160
Query: 176 LDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
LD+ ++ +R ++ T + + E E+ D +V++S+G + G EV
Sbjct: 161 LDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV- 218
Query: 236 EFFESLGFRLPPRKGVADFLQEV 258
+ P V FL EV
Sbjct: 219 -------YDHPANPFVMSFLGEV 234
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 8e-09
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 18/177 (10%)
Query: 693 LVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG-------YPKEQSTFA--RISGYVEQE 743
L+G SGAGK++L+ VL + G + I+G P +++ R G V Q+
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90
Query: 744 DVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803
P +T++E+L + P + + + + L L LR LS
Sbjct: 91 YNLWPHLTVQENL-----IEAPCRVLGLSKDQALARAEKL--LKRLRLKPYADRYPLHLS 143
Query: 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQ 860
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 8e-09
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRK---TGGYIEGDIKISG---YPKE 729
Q L++++ +TAL+G SG GK+T + L + IEG++ + G Y K+
Sbjct: 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77
Query: 730 QSTFA--RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL- 786
+ G V Q+ P ++I +++ + + K+ K + + VE + L
Sbjct: 78 VDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKD--KKELDKIVEWALKKAALW 134
Query: 787 DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
D ++ L S + LS Q++RL IA + P +I MDEPTS LD
Sbjct: 135 DEVKDDLKKS--ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 8e-09
Identities = 72/250 (28%), Positives = 109/250 (43%), Gaps = 45/250 (18%)
Query: 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVL 708
+ F +I++ + + S+G+ +VS G A+VG +GAGKTTL+++L
Sbjct: 334 AVEFRHITF--EFANS--SQGVF--------DVSFEAKAGQTVAIVGPTGAGKTTLINLL 381
Query: 709 --AGRKTGGYIEGD-IKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLP 765
T G I D I I+ +E R S +D +I E N+RL
Sbjct: 382 QRVYDPTVGQILIDGIDINTVTRES---LRKSIATVFQDAGLFNRSIRE------NIRLG 432
Query: 766 KEISKDQRHEFVEEVMSLVE--------LDSLRH--ALVGSPGSFGLSTEQRKRLTIAVE 815
+E + D EEV + L LVG G+ LS +R+RL IA
Sbjct: 433 REGATD------EEVYEAAKAAAAHDFILKRSNGYDTLVGERGN-RLSGGERQRLAIARA 485
Query: 816 LVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLM 875
++ N I+ +DE TS LD A V A+ + + RT H+ S + A +L+L
Sbjct: 486 ILKNAPILVLDEATSALDVETEARVKNAI-DALRKNRTTFIIAHRLST-VRNA--DLVLF 541
Query: 876 KRGGRVIYGG 885
GR+I G
Sbjct: 542 LDQGRLIEKG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 9e-09
Identities = 57/213 (26%), Positives = 86/213 (40%), Gaps = 60/213 (28%)
Query: 659 VDTPQAMRSKG--IHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLA 709
+ +P M ++G Q L ++S F +TAL+G SG GK+T + D++
Sbjct: 1 MASPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIP 60
Query: 710 GRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEE-----SLWFSANLRL 764
G + +EG+I + G E+++ P V + E + F
Sbjct: 61 GAR----VEGEILLDG-----------------ENIYDPHVDVVELRRRVGMVFQKPNPF 99
Query: 765 PKEI------------SKDQRHEFVEEVMSLVELDSLRHALVG-------SPGSFGLSTE 805
PK I KD+ + VE SLRHA + + GLS
Sbjct: 100 PKSIFENVAYGLRVNGVKDK-----AYLAERVE-RSLRHAALWDEVKDRLHESALGLSGG 153
Query: 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838
Q++RL IA L P ++ MDEP S LD A
Sbjct: 154 QQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 60/241 (24%), Positives = 98/241 (40%), Gaps = 44/241 (18%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWEL------DEFQVQRASAYIGQ 54
L+GP G+GKSTLL L G ++ SGS+ +G ++ Q++R I Q
Sbjct: 29 FVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQ 85
Query: 55 TDNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVG- 113
N I L+V E + G ++ + + EK+R A VG
Sbjct: 86 QFNLIERLSVLENVLSGR--LGRRSTWRSLFGLFPKEEKQR---------ALAALERVGL 134
Query: 114 GKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEIS 173
K D +SGGQ++RV ++ K + DE
Sbjct: 135 LDKAYQRADQ----------------------LSGGQQQRVAIARALMQQPKLILADEPV 172
Query: 174 TGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233
LD +++ Q++ ++ + T +++L Q E D +V L DG +V+ GP AE
Sbjct: 173 ASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAR-EYADRIVGLKDGRIVFDGPPAE 231
Query: 234 V 234
+
Sbjct: 232 L 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 60/228 (26%), Positives = 93/228 (40%), Gaps = 46/228 (20%)
Query: 3 LLLGPPGSGKSTLLLALAGKL----DGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNH 58
+L GP GSGK+TLL L G L +G+L G Y E + Q++R YI Q N
Sbjct: 35 ILTGPSGSGKTTLL-TLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNL 93
Query: 59 IAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
+ LT R+ + A Q +L+ E A ++A VG H
Sbjct: 94 LGFLTARQNVQMALELQ----------PNLSYQE------ARERARAMLEA--VGLGDH- 134
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDS 178
L+ +L SGGQK+RV +V K + DE + LDS
Sbjct: 135 ------LDYYPHNL--------------SGGQKQRVAIARALVHRPKLVLADEPTAALDS 174
Query: 179 STTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLV 226
+ +V+ ++ + T L+ + ++ D +V + DG L+
Sbjct: 175 KSGRDVVELMQKLAREQGCTILI--VTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 58/245 (23%), Positives = 98/245 (40%), Gaps = 54/245 (22%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRAS--AYIGQTDN 57
+ +LGP G+GKSTLL AL+G+L SG +T NG L+ + + A A + Q ++
Sbjct: 29 VLAILGPNGAGKSTLLKALSGEL---SPDSGEVTLNGVPLNSWPPEELARHRAVLPQ-NS 84
Query: 58 HIA-ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKK 116
+A TV+E + + E E R + A+ +
Sbjct: 85 SLAFPFTVQEVVQMGRIPHRSGR------------EPEEDERI---AAQALAATDL---S 126
Query: 117 HSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM------IVGPRKTLFMD 170
DY R +SGG+++RV + V + LF+D
Sbjct: 127 GLAGRDY--------------------RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLD 166
Query: 171 EISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGP 230
E ++ LD + ++ R + A++A+L + D +VLL G ++ G
Sbjct: 167 EPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224
Query: 231 RAEVL 235
+VL
Sbjct: 225 PQDVL 229
|
Length = 259 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 1e-08
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIK-ISGYP 727
+L NV+ +TAL+G SG GK+T + D++ G + G+I D I
Sbjct: 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76
Query: 728 KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL- 786
+ + G V Q+ P+ + + LR+ E +D E VEE + L
Sbjct: 77 VDVVELRKKVGMVFQKPNPFPKSIFDNVAY---GLRIHGEDDEDFIEERVEESLKAAALW 133
Query: 787 DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
D ++ L S + GLS Q++RL IA + +P +I MDEP S LD
Sbjct: 134 DEVKDKLDKS--ALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 22/170 (12%)
Query: 675 LQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP----- 727
+L+NVS G AL+G SG GK+TL +L G + G++ G P
Sbjct: 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ----GNVSWRGEPLAKLN 80
Query: 728 -KEQSTFARISGYVEQEDVHS--PQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLV 784
++ F R V Q+ + + P+ T+ E + LR + K +R E++ V
Sbjct: 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAV 138
Query: 785 ELD-SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
+LD S+ P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 139 DLDDSVLDKR---PPQ--LSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 22/178 (12%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG--- 725
Q L ++S +TA +G SG GK+TL+ D++ + IEG+I++ G
Sbjct: 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNI 94
Query: 726 YPK--EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSL 783
Y K + + R G V Q P+ +I E++ + LRL ++ E VE +
Sbjct: 95 YDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYG--LRLQGINNRRVLDEAVERSLRG 151
Query: 784 VEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
L D ++ L + +FGLS Q++RL IA + P ++ +DEPTS LD + +
Sbjct: 152 AALWDEVKDRLHEN--AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI 207
|
Length = 272 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-08
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 22/158 (13%)
Query: 687 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKEQSTFARISGYVEQED 744
G LVG SG+GK+TL G I +G+I+ G + + + +
Sbjct: 312 RGQTLGLVGESGSGKSTL-----GLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQ 366
Query: 745 V--------HSPQVTIEESLWFSANLRL-PKEISKDQRHEFVEEVMSLVELDSLRHALVG 795
V SP++T+ + + LR+ ++S +R + V E + V LD
Sbjct: 367 VVFQDPYGSLSPRMTVGQII--EEGLRVHEPKLSAAERDQRVIEALEEVGLD--PATRNR 422
Query: 796 SPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
P F S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 423 YPHEF--SGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-08
Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 40/237 (16%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 731
+ +L ++ PG + ALVG SG+GK+T+ +L + TGG + + G P Q
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ- 547
Query: 732 TFARISGYVEQEDVHSPQVTI--EESLWFSANLRLPKEISKDQRHEFVEEVMSLV----- 784
+ +H QV + +E + FS ++R + I+ EE+M+
Sbjct: 548 --------YDHHYLHR-QVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANA 596
Query: 785 -----ELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 839
E + VG GS LS Q++R+ IA LV P ++ +DE TS LDA +
Sbjct: 597 HDFIMEFPNGYDTEVGEKGSQ-LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQL 655
Query: 840 VMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMID 896
+ + RTV+ H+ S E D++L++K+G V ++G H Q+M D
Sbjct: 656 LQESRSR---ASRTVLLIAHRLS--TVERADQILVLKKGSVV----EMGTHKQLMED 703
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-08
Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 42/187 (22%)
Query: 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG---WELDEFQVQRASAYIGQTDNH 58
+LGP GSGKSTLL LAG LD G +T +G LD+ +V+R + Q D H
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLD---PLQGEVTLDGVPVSSLDQDEVRRRVSVCAQ-DAH 419
Query: 59 IAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
+ + TVRE L A A D L R+ +R P+
Sbjct: 420 LFDTTVRENLRLA--RPDATD--EELWAALERVGLADWLRALPD---------------- 459
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDS 178
GL DTV+G E +SGG+++R+ ++ L +DE + LD+
Sbjct: 460 ----------GL----DTVLG-EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDA 504
Query: 179 STTFQIV 185
T +++
Sbjct: 505 ETADELL 511
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 59/218 (27%), Positives = 90/218 (41%), Gaps = 25/218 (11%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFA 734
L +S G + LVG +GAGK+TL+ +AG G G I+ +G P E + A
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELA 68
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
R Y+ Q+ + + + L P + + + EV + LD V
Sbjct: 69 RHRAYLSQQQTPPFAMPV----FQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSV 124
Query: 795 G--SPGSFGLSTEQRKRLTIAVELVANPSI------IFMDEPTSGLDARAAAIVMRAVRN 846
S G + QR RL AV L P I + +DEP + LD A + R +
Sbjct: 125 NQLSGGEW-----QRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE 178
Query: 847 TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
G VV + H + + A D + L+K+G + G
Sbjct: 179 LCQQGIAVVMSSHDLNHTLRHA-DRVWLLKQGKLLASG 215
|
Length = 248 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-08
Identities = 61/236 (25%), Positives = 108/236 (45%), Gaps = 48/236 (20%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 737
L ++ PG ALVG SGAGK+TL +L + G I + G Q
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQ------- 406
Query: 738 GYVEQEDVHS-----PQVTIEESLWFSA----NLRLPKEISKDQR----------HEFVE 778
++ ++ + PQ + + F+A N+R + + D+ HEF+
Sbjct: 407 --LDPAELRARMALVPQ----DPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFIS 460
Query: 779 EVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838
L +G G LS QR+R+ IA ++ + I+ +DE TS LDA +
Sbjct: 461 A------LPEGYDTYLGERG-VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQ 513
Query: 839 IVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
+V +A+ T+ GRT + H+ + + +A D +++M + GR++ G H++++
Sbjct: 514 LVQQAL-ETLMKGRTTLIIAHRLAT-VLKA-DRIVVMDQ-GRIV---AQGTHAELI 562
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-08
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 23/180 (12%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTF---- 733
L NVS G + +L G +GAGK+TLM VL+G G EG+I G + S
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 734 -ARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISK------DQRHEFVEEVMSLVEL 786
A I+ + QE ++++ E N+ L EI+ D + +++++ ++L
Sbjct: 81 RAGIA-IIHQELALVKELSVLE------NIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL 133
Query: 787 DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN 846
D V G+ GL +Q + IA L ++ +DEPT+ L A+++ +R+
Sbjct: 134 DINPATPV---GNLGLGQQQ--LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRD 188
|
Length = 506 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-08
Identities = 52/209 (24%), Positives = 97/209 (46%), Gaps = 25/209 (11%)
Query: 666 RSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE----GDI 721
RS E+++++L +S G + A+VG+SG+GK+TLM++L G ++ G
Sbjct: 12 RSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL------GCLDKPTSGTY 65
Query: 722 KISGY---PKEQSTFARIS----GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRH 774
+++G + A++ G++ Q +T + N+ +P + +R
Sbjct: 66 RVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQ------NVEVPAVYAGLERK 119
Query: 775 EFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 834
+ + L++ L + P LS Q++R++IA L+ +I DEPT LD+
Sbjct: 120 QRLLRAQELLQRLGLEDRVEYQPSQ--LSGGQQQRVSIARALMNGGQVILADEPTGALDS 177
Query: 835 RAAAIVMRAVRNTVDTGRTVVCTIHQPSI 863
+ VM + D G TV+ H P +
Sbjct: 178 HSGEEVMAILHQLRDRGHTVIIVTHDPQV 206
|
Length = 648 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 11/210 (5%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQS----TF 733
L + PG L G +GAGK+TLM +L+G G +G+I SG P + S T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 734 ARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEF-VEEVMSLVELDSLRHA 792
+ QE P++++ E+++ + LP + ++ ++LD+
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 793 LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGR 852
G +G +Q + IA L ++ +DEP+S L + I++ +R+
Sbjct: 137 R--PVGDYGGGQQQ--LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL--KAH 190
Query: 853 TVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882
V C + +A + + + R G+ +
Sbjct: 191 GVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 13/164 (7%)
Query: 676 QLLSNVS-GIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFA 734
Q+L+++S I S G + AL+G SG+GKTTL+ ++AG + G I+ G + S
Sbjct: 16 QVLNDISLDIPS-GQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHG--TDVSRLH 70
Query: 735 ---RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRH 791
R G+V Q +T+ +++ F + LP+ + +V L+E+ L H
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFGLTV-LPRR-ERPNAAAIKAKVTQLLEMVQLAH 128
Query: 792 ALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 835
P LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 129 LADRYPAQ--LSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 56/232 (24%), Positives = 89/232 (38%), Gaps = 50/232 (21%)
Query: 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAE 61
++GP G+GKSTLL A+ G L SGSI G + ++ Y+ Q
Sbjct: 28 LAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFG--KPLEKERKRIGYVPQ------- 75
Query: 62 LTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVST 121
R ++D F ++D+ + H F + S K
Sbjct: 76 ---RRSIDR---------DFPISVRDVVLMGLYGHKGL------FRRLSKADKAK----- 112
Query: 122 DYVLNVLGLDLCSDTVVGSEM----LRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
V L + V SE+ + +SGGQ++RV +V L +DE G+D
Sbjct: 113 --VDEAL------ERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164
Query: 178 SSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229
T I + +R + + T L+ E FD ++LL + +V G
Sbjct: 165 PKTQEDIYELLRE-LRREGMTILVVTHDLGL-VLEYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 43/194 (22%), Positives = 62/194 (31%), Gaps = 56/194 (28%)
Query: 6 GPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQ--RASAYIGQTDNHIAELT 63
GP G GK+TLL LAG L SG + +NG L E + + R Y+G EL+
Sbjct: 33 GPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89
Query: 64 VRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDY 123
E L F A G + +
Sbjct: 90 ALENLHFWAAIHGG---------------------------------------AQRTIED 110
Query: 124 VLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQ 183
L +GL D +S GQ++R+ + + +DE +T LD
Sbjct: 111 ALAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALD------ 159
Query: 184 IVKCVRNFVHQMDA 197
V + A
Sbjct: 160 -KAGVALLAGLLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 3e-08
Identities = 53/172 (30%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFA- 734
++L V+ +TAL+G SG+GK+TL+ V R Y E + Y Q F
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRLIELYPEARVSGEVYLDGQDIFKM 75
Query: 735 ------RISGYVEQEDVHSPQVTIEESLWFSANL-RLPKEISKDQRHEFVEEVMSLVEL- 786
R V Q P ++I E++ L RL K SK + E V + +L
Sbjct: 76 DVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVK--SKKELQERVRWALEKAQLW 133
Query: 787 DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838
D ++ L G LS Q++RL IA L P ++ DEPT+ LD A
Sbjct: 134 DEVKDRLDAPAGK--LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA 183
|
Length = 250 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-08
Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 22/210 (10%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKE--QSTF 733
L NV+ P + AL+G +GAGK+TL+ L G +K G I G + S
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQGKEIDFKSSKE 69
Query: 734 ARISG--YVEQEDVHSPQVTIEESLWFSANLRLPKE---ISKDQRHEFVEEVMSLVELDS 788
A +G V QE Q ++ +++W R P + + +D+ + + + +++D
Sbjct: 70 ALENGISMVHQELNLVLQRSVMDNMWLG---RYPTKGMFVDQDKMYRDTKAIFDELDIDI 126
Query: 789 LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV 848
A V + LS Q + + IA N I+ MDEPTS L + + +R
Sbjct: 127 DPRAKVAT-----LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK 181
Query: 849 DTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
+ G +V H+ EIF+ DE+ +++ G
Sbjct: 182 ERGCGIVYISHKME-EIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 35/225 (15%)
Query: 648 LTMTFHNIS--YYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLM 705
+ + N+S Y TP R+ L +V+ G TA +G +G+GK+T+M
Sbjct: 1 MGINLQNVSYTYQAGTPFEGRA----------LFDVNLTIEDGSYTAFIGHTGSGKSTIM 50
Query: 706 DVLAGRKT---GGYIEGDIKISGYP--KEQSTFARISGYVEQEDVHSPQV---TIEESLW 757
+L G G D I+ K+ + G V Q Q+ T+ + +
Sbjct: 51 QLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQ--FPESQLFEETVLKDVA 108
Query: 758 FSANLRLPKE--ISKDQRHEFVEEVMSLVELD-SLRHALVGSPGSFGLSTEQRKRLTIAV 814
F P+ +S+++ E ++LV + SL +P F LS Q +R+ IA
Sbjct: 109 FG-----PQNFGVSQEEAEALAREKLALVGISESLFEK---NP--FELSGGQMRRVAIAG 158
Query: 815 ELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 859
L P I+ +DEPT+GLD + +M + +G T+V H
Sbjct: 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 55/233 (23%), Positives = 90/233 (38%), Gaps = 45/233 (19%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAEL 62
+LGP G+GKSTLL +AG SG I NG + +R + + Q +N A L
Sbjct: 30 ILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTASPPAERPVSMLFQENNLFAHL 86
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTD 122
TV + + G + L ++E+ +
Sbjct: 87 TVAQNIGL-----GLSPGLK-----LNAEQREK-------------------------VE 111
Query: 123 YVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTF 182
+GL + G +SGGQ++RV +V + L +DE + LD +
Sbjct: 112 AAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166
Query: 183 QIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
+++ V + T LM P + + D +V L +G + QG E+L
Sbjct: 167 EMLALVSQLCDERKMTLLMVTHH-PEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 50/227 (22%), Positives = 85/227 (37%), Gaps = 45/227 (19%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWE-LDEFQVQRASAYIGQTDNHIAEL 62
++GP G+GKSTLL +AG ++ SGSI N QR + + Q +N A L
Sbjct: 29 IMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL 85
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTD 122
TVR+ + G + L ++E K +
Sbjct: 86 TVRQNIGL-----GLHPGL-----KLNAEQQE--------------------KVVDAAQQ 115
Query: 123 YVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTF 182
+G+ D + +SGGQ++RV +V P L +DE + LD
Sbjct: 116 -----VGIADYLDRLPEQ-----LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLRE 165
Query: 183 QIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229
+++ V+ + T LM + + + ++S G +
Sbjct: 166 EMLALVKQLCSERQRTLLMVTHH-LSDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 4e-08
Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 35/204 (17%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDV-- 745
G + L+G SG GKTT++ ++AG + EG I I G E T I +Q D+
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG---EDVTHRSI----QQRDICM 82
Query: 746 --HS----PQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGS 799
S P +++ E++ + L++ + K++R + V+E + LV+L V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKMLG-VPKEERKQRVKEALELVDLAGFEDRYVDQ--- 136
Query: 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV-----DTGRTV 854
+S Q++R+ +A L+ P ++ DEP S LDA + R++R + T
Sbjct: 137 --ISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 855 VCTIHQPSIEIFEAFDELLLMKRG 878
+ H S E F D +++M +G
Sbjct: 191 LYVTHDQS-EAFAVSDTVIVMNKG 213
|
Length = 351 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-08
Identities = 56/195 (28%), Positives = 81/195 (41%), Gaps = 62/195 (31%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTL------------------------MDVLAGR 711
+L +VS PG A+VG SG+GK+TL +DV A R
Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVR 526
Query: 712 KTGGYIEGDIKI-SGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISK 770
+ G + + ++ SG S F I+G +T++E+ W +A
Sbjct: 527 RQLGVVLQNGRLMSG-----SIFENIAG--------GAPLTLDEA-WEAA---------- 562
Query: 771 DQRHEFVEEV----MSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMD 826
+ E++ M + H ++ S G LS QR+RL IA LV P I+ D
Sbjct: 563 -RMAGLAEDIRAMPMGM-------HTVI-SEGGGTLSGGQRQRLLIARALVRKPRILLFD 613
Query: 827 EPTSGLDARAAAIVM 841
E TS LD R AIV
Sbjct: 614 EATSALDNRTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 4e-08
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 34/183 (18%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKEQST 732
Q L N++ + +TAL+G SG GK+T + + + G + EG+I + +P +
Sbjct: 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HPDNVNI 87
Query: 733 FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKD----------QRHEFVEEVMS 782
+ +V +V + S+ F PK I ++ +R +EE +
Sbjct: 88 LSP--------EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVE 139
Query: 783 LVELDSLRHALVGSPG-------SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 835
++LR+A + +F LS Q++RL IA L +P I+ DEPTS LD
Sbjct: 140 ----NALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPI 195
Query: 836 AAA 838
A A
Sbjct: 196 ATA 198
|
Length = 265 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 4e-08
Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 27/191 (14%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG--YPKEQSTFA 734
LL +S G L L GS+GAGKTTL+ ++AG +G+I K+ T+
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 735 RISGYVEQEDVHSPQVTIEESLWF-----SANLRLPKEISKDQRHEFVEEVMSLVELDSL 789
+ +V +P +T+ E+ + + + L L SL
Sbjct: 74 KQLCFVGHRSGINPYLTLRENCLYDIHFSPGAV----------------GITELCRLFSL 117
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 849
H L+ P LS+ Q++++ + ++ + +DEP LD + ++ ++
Sbjct: 118 EH-LIDYPCGL-LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA 175
Query: 850 TGRTVVCTIHQ 860
G V+ T HQ
Sbjct: 176 KGGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 5e-08
Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 21/197 (10%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG---------YP 727
+L +++ + ++G SG+GK+TL+ VL R Y + IK+ G +
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIY-DSKIKVDGKVLYFGKDIFQ 82
Query: 728 KEQSTFARISGYVEQEDVHSPQVTIEESLWF---SANLRLPKEISKDQRHEFVEEVMSLV 784
+ + G V Q+ P ++I +++ + S ++ +EI K VEE + V
Sbjct: 83 IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKK-----IVEECLRKV 137
Query: 785 ELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 844
L + + SP S LS Q++RLTIA L P ++ MDEPTS +D + + + +
Sbjct: 138 GLWKEVYDRLNSPAS-QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI 196
Query: 845 RNTVDTGRTVVCTIHQP 861
+ +V H P
Sbjct: 197 -TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 52/185 (28%), Positives = 73/185 (39%), Gaps = 65/185 (35%)
Query: 691 TALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQE 743
TA +G SG GK+T + D + G + + G I + G E
Sbjct: 48 TAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDG-----------------E 86
Query: 744 DVHSPQVTIEE-----SLWFSANLRLPKEI---------------SKDQRHEFVEEVMSL 783
D++ P++ + E + F PK I SK + E VE
Sbjct: 87 DIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVET---- 142
Query: 784 VELDSLRHA--------LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 835
SLR A + PG+ GLS Q++RL IA + +P +I MDEP S LD
Sbjct: 143 ----SLRKAGLWEEVKDRLHEPGT-GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPI 197
Query: 836 AAAIV 840
A A V
Sbjct: 198 ATAKV 202
|
Length = 267 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 6e-08
Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE---GDI-KISGYPKEQSTFARIS-GYV 740
G + ++G SG+GK+TL+ +L T G I DI K+S E R V
Sbjct: 54 GEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLS--AAELRELRRKKISMV 111
Query: 741 EQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSF 800
Q P T+ E++ F ++ + K +R E E + LV L+
Sbjct: 112 FQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYPNE---- 164
Query: 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
LS ++R+ +A L +P I+ MDE S LD
Sbjct: 165 -LSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 6e-08
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 37/201 (18%)
Query: 654 NISYYVDTPQAMR--SKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGR 711
++S+Y +T +A+ S I+ K+ TA++G SG GK+T + L
Sbjct: 12 DLSFYYNTSKAIEGISMDIYRNKV---------------TAIIGPSGCGKSTFIKTL--- 53
Query: 712 KTGGYIEGDIKISG---YPKEQSTFARIS--------GYVEQEDVHSPQVTIEESLWFSA 760
+EG +K+ G + + RI+ G V Q P ++I E++ +
Sbjct: 54 NRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYG- 111
Query: 761 NLRLPKEISKDQRHEFVEEVMSLVEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVAN 819
+R+ ++ + E VE + L ++ L S + GLS Q++RL IA L
Sbjct: 112 -VRISAKLPQADLDEIVESALKGAALWQEVKDKLNKS--ALGLSGGQQQRLCIARALAIK 168
Query: 820 PSIIFMDEPTSGLDARAAAIV 840
P ++ MDEP S LD A V
Sbjct: 169 PKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 6e-08
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 27/165 (16%)
Query: 680 NVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGD-IKISGYPKEQSTFARI 736
+VS G + AL+G+SG GK+TL+ +LAG + T G I D + +S P Q R
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RP 92
Query: 737 SGYVEQEDVHSPQVTIEESLWFSANL-RLPK-EISKDQRHEFVEEVMSLVELDSLR---- 790
+ Q P +T+E+++ F +LPK EI+ R V E++ LV +
Sbjct: 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIA--SR---VNEMLGLVHMQEFAKRKP 147
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 835
H L G QR+R+ +A L P ++ +DEP LD +
Sbjct: 148 HQLSGG---------QRQRVALARSLAKRPKLLLLDEPMGALDKK 183
|
Length = 377 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 7e-08
Identities = 58/252 (23%), Positives = 95/252 (37%), Gaps = 69/252 (27%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG---WELDEFQVQRASAYIGQTDN 57
+ LG G+GKST L L G L L SG + NG + E ++ +GQ
Sbjct: 52 IVGFLGANGAGKSTTLKMLTGLL---LPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQ 108
Query: 58 HIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKH 117
+L ++L+ + I + +
Sbjct: 109 LWWDLPALDSLEVL-----------------------KLIY------------EIPDDEF 133
Query: 118 SVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
+ D++ +L L+ V R +S GQ+ R ++ P K LF+DE + GLD
Sbjct: 134 AERLDFLTEILDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD 188
Query: 178 SSTTFQIVKCVRNFVHQMD----ATALMALLQPPPETFELFDDL-------VLLSDGYLV 226
+ I R F+ + + AT L+ T +FDD+ +L+ G LV
Sbjct: 189 VNAQANI----REFLKEYNEERQATVLL--------TTHIFDDIATLCDRVLLIDQGQLV 236
Query: 227 YQGPRAEVLEFF 238
+ G A++ E F
Sbjct: 237 FDGTLAQLQEQF 248
|
Length = 325 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 65/266 (24%), Positives = 103/266 (38%), Gaps = 65/266 (24%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNK--SGSITYNG---WELDEFQVQRASAYIGQTDNH 58
+LG GSGKSTLL + G L + G I +G +L E ++ +G
Sbjct: 39 ILGGSGSGKSTLLRLILG-----LLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQ 93
Query: 59 IA---ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGK 115
A LTV E + F +++ T+L + IR E+ MK
Sbjct: 94 GALFSSLTVFENVAF-------------PLREHTKLPESL-IR---EL-VLMK------- 128
Query: 116 KHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTG 175
L ++GL +SGG +KRV I + LF+DE ++G
Sbjct: 129 ---------LELVGLR----GAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSG 175
Query: 176 LDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
LD + I + +R + T +M + D + +L+DG ++ +G E+L
Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHD-LDSLLTIADRVAVLADGKVIAEGTPEELL 234
Query: 236 --------EFFESL-----GFRLPPR 248
+FF + FR P R
Sbjct: 235 ASDDPWVRQFFNGIRDGPIPFRYPAR 260
|
Length = 263 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 7e-08
Identities = 73/273 (26%), Positives = 122/273 (44%), Gaps = 59/273 (21%)
Query: 647 PLTMTFHNISY-YVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLM 705
+++T +N+S+ Y D PQ +L +S G AL+G +G GK+TL+
Sbjct: 336 QVSLTLNNVSFTYPDQPQ------------PVLKGLSLQIKAGEKVALLGRTGCGKSTLL 383
Query: 706 DVLAGRKTGGY--IEGDIKISGYPKEQSTFARISGYVEQE-----DVHSPQVTIEESLWF 758
+L T + +G+I ++G P I+ Y E V S +V + F
Sbjct: 384 QLL----TRAWDPQQGEILLNGQP--------IADYSEAALRQAISVVSQRVHL-----F 426
Query: 759 SA----NLRLPKEISKDQRHEFVEEVMSLVELDSL---RHALVGSPGSFG--LSTEQRKR 809
SA NL L + D+ + EV+ V L+ L L G G LS +++R
Sbjct: 427 SATLRDNLLLAAPNASDEA---LIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRR 483
Query: 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAF 869
L IA L+ + ++ +DEPT GLDA ++ + +TV+ H+ + E F
Sbjct: 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLA-EHAQNKTVLMITHR--LTGLEQF 540
Query: 870 DELLLMKRGGRVIYGGKLGVHSQIMID---YFQ 899
D + +M G++I G H +++ Y+Q
Sbjct: 541 DRICVMD-NGQIIEQGT---HQELLAQQGRYYQ 569
|
Length = 574 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 8e-08
Identities = 50/168 (29%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
Query: 690 LTALVGSSGAGKTTLMDVLA---GRKTGGYIEGDIKISGYPKEQS-----TFARISGYVE 741
+TAL+G SG GK+T + L R I+G +++ G Q + G V
Sbjct: 73 VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVF 132
Query: 742 QEDVHSPQVTIEESLWFSAN----------LRLPKEISKDQRHEFVEEVMSLVEL-DSLR 790
Q P+ +I E++ + RL KD E VE + L D +
Sbjct: 133 QSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN 191
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838
L + GLS Q++RL IA L +P +I MDEP S LD A +
Sbjct: 192 DRL--DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATS 237
|
Length = 305 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 8e-08
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 40/182 (21%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTF 733
K Q+L N++ F +TA++G SG GK+TL+ L + + G
Sbjct: 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRAL--NRMNDIVSG-------------- 59
Query: 734 ARISGYV--EQEDVHSPQVTI-----EESLWFSANLRLPKEI--------------SKDQ 772
AR+ G V + E+++SP + + + F PK I ++ +
Sbjct: 60 ARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSR 119
Query: 773 RHEFVEEVMSLVEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 831
E VE+ + L D ++ L S LS Q++RL IA L P +I MDEP S
Sbjct: 120 LDEVVEKSLRQAALWDEVKDNLHKS--GLALSGGQQQRLCIARVLAIEPEVILMDEPCSA 177
Query: 832 LD 833
LD
Sbjct: 178 LD 179
|
Length = 251 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 8e-08
Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 17/214 (7%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTT----LMDVLAGRKTGGYIEGDIKISGYP-KEQS 731
L+ +++ G + ALVG SG+GK+ ++ +L T G+I + G P S
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 732 TFARISGYVEQE--DVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL 789
R + Q +P T+ LR ++SK R +E + V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNH--AIETLRSLGKLSKQARALILE-ALEAVGLPDP 115
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV- 848
L P F LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 849 DTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882
G ++ H + + DE+ +M GR++
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDD-GRIV 205
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 9e-08
Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 48/230 (20%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG---WELDEFQVQRASAYIGQTDNHIA 60
++G GSGKSTLL LAG SGS+ +G +LD ++R Y+ Q D +
Sbjct: 35 IIGRVGSGKSTLLKLLAGLYKP---TSGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLF 90
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
T+R+ + A D + ++A+ + G
Sbjct: 91 YGTLRDNITLGAP----------LADD----------------ERILRAAELAG-----V 119
Query: 121 TDYVLN-VLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSS 179
TD+V GLDL +G E RG+SGGQ++ V ++ L +DE ++ +D +
Sbjct: 120 TDFVNKHPNGLDL----QIG-ERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMN 174
Query: 180 TTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229
+ ++ + +R + D T ++ +P +L D ++++ G +V G
Sbjct: 175 SEERLKERLRQLL--GDKTLIIITHRPS--LLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 1e-07
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG---WELDEFQVQRASAYIGQTDN 57
++GP GSGKSTLL L D SG I +G +LD +++ AY+ Q D
Sbjct: 30 KVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESLRKNIAYVPQ-DP 85
Query: 58 HIAELTVRE 66
+ T+RE
Sbjct: 86 FLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 39/218 (17%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTL-------MDVLAGRKTGGYIEGDIKISGYPKE 729
+L +V PG + G +G+GK++L +D+ G+ I+G I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV---IDG-IDISKLPL- 90
Query: 730 QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRL---PKEISKDQRHEFVEEVMSLVEL 786
+ +R+S + +++ + FS ++R P+ D R + E + + +L
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDR---LWEALEIAQL 135
Query: 787 DSLRHALVG------SPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
++ +L G + G S QR+ +A V SI+ MDE T+ +D I+
Sbjct: 136 KNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENIL 195
Query: 841 MRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
+ V T RTVV H+ S I +A D +L++ RG
Sbjct: 196 QKVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 41/150 (27%), Positives = 55/150 (36%), Gaps = 57/150 (38%)
Query: 692 ALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQ 749
LVG SG GK+TL ++ G T G I E +D+
Sbjct: 43 GLVGESGCGKSTLGRLILGLEEPTSGEI---------------------LFEGKDIT--- 78
Query: 750 VTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-----LRHALVGSPGSFGLST 804
++SK++R E V E++ V L H L S
Sbjct: 79 -----------------KLSKEERRERVLELLEKVGLPEEFLYRYPHEL---------SG 112
Query: 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDA 834
QR+R+ IA L NP +I DEP S LD
Sbjct: 113 GQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 147 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQP 206
SGGQ++RV ++ L +DE ++GLD ++ ++++ +R + T ++
Sbjct: 82 SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-AEEGRTVIIVTHD- 139
Query: 207 PPETFELFDDLVLLSDG 223
P D +++L DG
Sbjct: 140 PELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-07
Identities = 55/241 (22%), Positives = 93/241 (38%), Gaps = 50/241 (20%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNK--SGSITYNGWELDEF---QVQRASAYIGQT 55
++G GSGKSTLL KL L K G I +G +L++ ++R Y+ Q
Sbjct: 501 KVAIVGRSGSGKSTLL-----KLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQ- 554
Query: 56 DNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGK 115
D + ++RE + + I + +L F
Sbjct: 555 DPFLFSGSIRENIALGN----PEATDEE-IIEAAQLAG---------AHEF--------- 591
Query: 116 KHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTG 175
+ L + DT VG E +SGGQ++R+ ++ K L +DE ++
Sbjct: 592 -----------IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSA 639
Query: 176 LDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
LD T I+ + Q+ + ++ T D +++L G +V QG E+L
Sbjct: 640 LDPETEAIIL----QNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL 695
Query: 236 E 236
Sbjct: 696 A 696
|
Length = 709 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 42/194 (21%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG---WELDEFQVQRASAYIGQTDN 57
L+GP G+GKSTLL L G +D GSI NG + D + A++ Q
Sbjct: 350 RVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHP- 405
Query: 58 HIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKH 117
+ T+ E + A D+ A I++
Sbjct: 406 FLFAGTIAENIRLARP-----DASDAEIREALER-------------------------- 434
Query: 118 SVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
D + L L DT +G E G+SGGQ +R+ + L +DE + LD
Sbjct: 435 -AGLDEFVAALPQGL--DTPIG-EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLD 490
Query: 178 SSTTFQIVKCVRNF 191
+ T ++++ +R
Sbjct: 491 AETEAEVLEALRAL 504
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 60/242 (24%), Positives = 91/242 (37%), Gaps = 59/242 (24%)
Query: 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIG---QTDNH 58
LLGP G+GKSTL L + G I+ G +L + A A +G Q
Sbjct: 30 VALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRR-APRAALARLGVVFQQPTL 85
Query: 59 IAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
+L+VR+ L + A G L+R E I
Sbjct: 86 DLDLSVRQNLRYHAALHG-----------LSRAEARARIAE------------------- 115
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDS 178
+L LGL +D V R ++GG ++RV ++ L +DE + GLD
Sbjct: 116 -----LLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDP 165
Query: 179 STTFQIVKCVRNFV--HQMD---ATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233
++ I VR + AT L+ ++ D LV+L G ++ G AE
Sbjct: 166 ASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVLHRGRVLADGAAAE 218
Query: 234 VL 235
+
Sbjct: 219 LR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-07
Identities = 57/243 (23%), Positives = 98/243 (40%), Gaps = 49/243 (20%)
Query: 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV-QRASAYIG---QTDN 57
L+GP G+GK+TL ++G L SGS+ ++G ++ + A IG Q
Sbjct: 29 HGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPR 85
Query: 58 HIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKH 117
ELTV E + AA+ + + A R R E +A
Sbjct: 86 LFPELTVLENVMVAAQARTGSGLLLA-----------RARREEREARE--RA-------- 124
Query: 118 SVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
+ +L +GL +D G +S GQ++R+ + K L +DE + GL+
Sbjct: 125 ----EELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLN 175
Query: 178 SSTTFQIVKCVRNFVHQMDATAL-----MALLQPPPETFELFDDLVLLSDGYLVYQGPRA 232
T ++ + +R + + T L M ++ L D + +L G ++ +G
Sbjct: 176 PEETEELAELIRE-LRERGITVLLVEHDMDVV------MSLADRVTVLDQGRVIAEGTPD 228
Query: 233 EVL 235
EV
Sbjct: 229 EVR 231
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 64/242 (26%), Positives = 103/242 (42%), Gaps = 51/242 (21%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNK-SGSITYNGWELDEFQ----VQRASAYIGQT 55
+T ++GP G+GKST LL++ +L L K SG IT +G EL ++ S I +
Sbjct: 29 ITSIIGPNGAGKST-LLSMMSRL---LKKDSGEITIDGLELTSTPSKELAKKLS--ILKQ 82
Query: 56 DNHI-AELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGG 114
+NHI + LTVR+ + F + RL KE N I+
Sbjct: 83 ENHINSRLTVRDLV-----------GFGRFPYSQGRLTKEDRRIINEAIE---------- 121
Query: 115 KKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEIST 174
L L+ SD L +SGGQ++R ++ + +DE
Sbjct: 122 ------------YLHLEDLSD-----RYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLN 164
Query: 175 GLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234
LD + QI+K +R ++ T ++ +L D +V L +G +V QG E+
Sbjct: 165 NLDMKHSVQIMKILRRLADELGKT-IVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEI 223
Query: 235 LE 236
++
Sbjct: 224 IQ 225
|
Length = 252 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 60/242 (24%), Positives = 94/242 (38%), Gaps = 51/242 (21%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRA------------ 48
M LLGP GSGKSTLL L+G + G+ + I EL VQR
Sbjct: 32 MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI-----ELLGRTVQREGRLARDIRKSRA 86
Query: 49 -SAYIGQTDNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFM 107
+ YI Q N + L+V E + A G+ + TR +K+R ++ A
Sbjct: 87 NTGYIFQQFNLVNRLSVLENVLIGA--LGSTPFWRTCFSWFTREQKQRALQ------ALT 138
Query: 108 KASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTL 167
+ V VST +SGGQ++RV ++ K +
Sbjct: 139 RVGMVHFAHQRVST------------------------LSGGQQQRVAIARALMQQAKVI 174
Query: 168 FMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVY 227
DE LD + ++ +R+ ++Q D ++ L + +V L G++ Y
Sbjct: 175 LADEPIASLDPESARIVMDTLRD-INQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY 233
Query: 228 QG 229
G
Sbjct: 234 DG 235
|
Length = 262 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 50/209 (23%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQS 731
E++ Q+L N+S G AL+G SG+GK+TL+ + GD+K
Sbjct: 12 EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLL---------QLLTGDLKPQ------- 55
Query: 732 TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISK-DQR-HEFVEEVMSLVELDSL 789
++T++ L IS +QR + F +L
Sbjct: 56 ---------------QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD---------TTL 91
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 849
R+ L G S G +R+RL +A L+ + I+ +DEPT GLD ++ + V
Sbjct: 92 RNNL-GRRFSGG----ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VL 145
Query: 850 TGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
+T++ H + E D++L ++ G
Sbjct: 146 KDKTLIWITHH--LTGIEHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 15/147 (10%)
Query: 693 LVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKEQSTFARIS--GYVEQEDVH 746
++G SG+GK+TL+ + T G I+G I+ +++ R V Q
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQ-DIAAMSRKELRELRRKKISMVFQSFAL 113
Query: 747 SPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQ 806
P T+ E++ F ++ + + +R E E + LV L+ H LS
Sbjct: 114 LPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDE-----LSGGM 165
Query: 807 RKRLTIAVELVANPSIIFMDEPTSGLD 833
++R+ +A L +P I+ MDE S LD
Sbjct: 166 QQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 35/222 (15%)
Query: 661 TPQAMRSKGIHEK--KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVL-------AGR 711
A+ + +H++ + ++L VS + G + +++GSSG+GK+T + + AG
Sbjct: 3 AENALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGS 62
Query: 712 ----------KTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSAN 761
K +G +K + + Q R+ G V Q +T+ E++
Sbjct: 63 IRVNGEEIRLKRDK--DGQLKPADKRQLQRLRTRL-GMVFQHFNLWSHMTVLENV----- 114
Query: 762 LRLPKEISKDQRHEFVEEVMSL---VELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVA 818
+ P + + E +E V + A P LS Q++R+ IA L
Sbjct: 115 IEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAY---PAH--LSGGQQQRVAIARALAM 169
Query: 819 NPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQ 860
P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 170 EPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 23/213 (10%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGY--PKEQST 732
L +V+ G A++G +G+GK+TL+ L G + T G + G+ I+ K+
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 733 FARISGYVEQEDVHSPQV---TIEESLWFS-ANLRLPKEISKDQRHEFVEEVMSLVELDS 788
+ G V Q H Q+ T+E+ + F N + +E +K + E++ LV L
Sbjct: 83 LRKKVGIVFQFPEH--QLFEETVEKDICFGPMNFGVSEEDAK----QKAREMIELVGLPE 136
Query: 789 LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV-RNT 847
L SP F LS Q +R+ IA L P ++ +DEPT+GLD + +M +
Sbjct: 137 --ELLARSP--FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLH 192
Query: 848 VDTGRTVVCTIHQPSIEIFEAF-DELLLMKRGG 879
+ G T V H S+E + D++++M +G
Sbjct: 193 KEKGLTTVLVTH--SMEDAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 48/204 (23%), Positives = 95/204 (46%), Gaps = 31/204 (15%)
Query: 654 NISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKT 713
N+S+Y DT + +L VS +TA++G SG GK+T + L
Sbjct: 12 NLSFYYDTQK-------------ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE 58
Query: 714 GGYIEGDIKISGYPK--EQSTFAR---ISGYVEQEDVHSPQ-----VTIEESLWFSANLR 763
+E ++++ G + Q+ + R ++ Q + P+ +++ +++ + ++
Sbjct: 59 ---LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYG--VK 113
Query: 764 LPKEISKDQRHEFVEEVMSLVEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSI 822
+ K + + VE + +L D ++H + S + LS Q++RL IA L P +
Sbjct: 114 IVGWRPKLEIDDIVESALKDADLWDEIKHKIHKS--ALDLSGGQQQRLCIARALAVKPKV 171
Query: 823 IFMDEPTSGLDARAAAIVMRAVRN 846
+ MDEP GLD A+ V +++
Sbjct: 172 LLMDEPCFGLDPIASMKVESLIQS 195
|
Length = 261 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-07
Identities = 45/199 (22%), Positives = 76/199 (38%), Gaps = 49/199 (24%)
Query: 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDE-----FQVQRASAYIGQT- 55
LLG G+GKSTLLL L G L +SG++ +G LD + ++ + Q
Sbjct: 21 LALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP 77
Query: 56 DNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGK 115
D+ + V + + F G +++ E ER +R +A + G +
Sbjct: 78 DDQLFAADVDQDVAFGPLNLGLSEA-----------EVERRVR-----EALTAVGASGLR 121
Query: 116 KHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTG 175
+ +SGG+KKRV + L +DE + G
Sbjct: 122 ERPTHC------------------------LSGGEKKRVAIAGAVAMRPDVLLLDEPTAG 157
Query: 176 LDSSTTFQIVKCVRNFVHQ 194
LD + Q++ +R +
Sbjct: 158 LDPAGREQMLAILRRLRAE 176
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 63/262 (24%), Positives = 102/262 (38%), Gaps = 51/262 (19%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDI--KISGYPKEQ 730
++L N+S G + ++G SGAGK+ LM VL G G I ++ K
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK-- 68
Query: 731 STFARISGYVE-QEDVHSPQVTIEESL-------WFSAN---LRLPKEIS---------- 769
GYVE V P +L W ++ R+ K I+
Sbjct: 69 ------CGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALY 122
Query: 770 KDQR----------------HEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIA 813
D E V + L+E+ L H + + LS +++R+ +A
Sbjct: 123 GDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLA 180
Query: 814 VELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV-DTGRTVVCTIHQPSIEIFEAFDEL 872
+L P + DEPT LD + A +V A+ V +G ++V T H P + I + D+
Sbjct: 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKA 239
Query: 873 LLMKRGGRVIYGGKLGVHSQIM 894
+ ++ G G V + M
Sbjct: 240 IWLENGEIKEEGTPDEVVAVFM 261
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-07
Identities = 58/255 (22%), Positives = 91/255 (35%), Gaps = 81/255 (31%)
Query: 2 TLLLGPPGSGKSTLLLALAG--KLDGNLNKSGSITYNGWELDEFQV-------QRASAYI 52
T + G GSGK+TL+ +AG + D G I NG L + + +R Y+
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDE-----GEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 53 GQTDNHIAELTVRETLDFA-ARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASS 111
Q L+VR L + R + ER I
Sbjct: 81 FQEARLFPHLSVRGNLRYGMKRARP----------------SERRISF------------ 112
Query: 112 VGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDE 171
+ V+ +LG+ + G +SGG+K+RV G ++ + L MDE
Sbjct: 113 ----------ERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDE 157
Query: 172 ISTGLDSSTTFQIVKCVRN----------FV-HQMDATALMALLQPPPETFELFDDLVLL 220
LD ++I+ + +V H + +A D +V+L
Sbjct: 158 PLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA------------DRVVVL 205
Query: 221 SDGYLVYQGPRAEVL 235
DG + GP AEV
Sbjct: 206 EDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-07
Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 45/229 (19%)
Query: 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV-QRASAYIGQTDNHIA 60
T ++GP GSGKSTLL +AG +SG + NG ++ R + + Q +N A
Sbjct: 27 TAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFA 83
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
LTV + + G + LT +++ I+ + + G +
Sbjct: 84 HLTVEQNVGL-----GLSPGL-----KLTAEDRQA-------IEVALARVGLAGLE---- 122
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
+ +SGG+++RV ++V + L +DE LD +
Sbjct: 123 -------------------KRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229
+++ V + + T LM Q P + L +V L +G + QG
Sbjct: 164 RAEMLDLVLDLHAETKMTVLMVTHQ-PEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 5e-07
Identities = 48/155 (30%), Positives = 71/155 (45%), Gaps = 33/155 (21%)
Query: 691 TALVGSSGAGKTTLMDVLAG--RKTGGYI----------EGDIKISGYPKEQSTFARISG 738
TA+ G SGAGKT+L++ ++G R G I E I + P E+ RI G
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL---PPEKR---RI-G 79
Query: 739 YVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPG 798
YV Q+ P + NLR ++K +F +V L + L PG
Sbjct: 80 YVFQDARLFPHYKVR------GNLRY--GMAKSMVAQF----DKIVALLGIEPLLDRYPG 127
Query: 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
S LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 S--LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 19/211 (9%)
Query: 659 VDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLM---DVLAGRKTGG 715
+T R + Q L +VS +TA++G SG GK+T + + +
Sbjct: 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAA 95
Query: 716 YIEGDIKISG---YPKEQSTFA--RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISK 770
+EG++ G Y + A R G V Q+ P+ +I +++ + L++
Sbjct: 96 RVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYG--LKIQGYDGD 152
Query: 771 -DQRHEFVEEVMSLVEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEP 828
D+R VEE + L D ++ L S LS Q++RL IA + +P +I MDEP
Sbjct: 153 IDER---VEESLRRAALWDEVKDQLDSS--GLDLSGGQQQRLCIARAIAPDPEVILMDEP 207
Query: 829 TSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 859
S LD A + + + + TVV H
Sbjct: 208 ASALDPVATSKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 20/187 (10%)
Query: 687 PGVLTALVGSSGAGKTTLMDVLAGR------KTGGYIEGDIKISGY--PKEQSTFARISG 738
G + LVG +G GK+T + +LAG+ K + D + + + Q+ F ++
Sbjct: 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLE 84
Query: 739 YVEQEDVHSPQVT--IEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
+ + + PQ I +++ L K KD+R + +E++ +EL + +
Sbjct: 85 G-DVKVIVKPQYVDLIPKAVKGKVGELLKK---KDERGKL-DELVDQLELRHVLDRNIDQ 139
Query: 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVC 856
LS + +R+ IA L + F DEP+S LD + R +R + V+
Sbjct: 140 -----LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLV 194
Query: 857 TIHQPSI 863
H ++
Sbjct: 195 VEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 63/197 (31%)
Query: 685 FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQED 744
F G LT + G +G+GK+T++D + G G + A +
Sbjct: 18 FGEGSLTIITGPNGSGKSTILDAI------GLALG----------GAQSATRRRSGVKAG 61
Query: 745 VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804
V+ E L R LS
Sbjct: 62 CIVAAVSAE--------------------------------LIFTRL---------QLSG 80
Query: 805 EQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQ 860
+++ +A+ L + + +DE GLD R + A+ + G V+ H
Sbjct: 81 GEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHL 140
Query: 861 PSIEIFEAFDELLLMKR 877
P E+ E D+L+ +K+
Sbjct: 141 P--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 17/151 (11%)
Query: 687 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR--ISGYVEQED 744
G A++G SGAGK+TL++++AG T G + ++G + +R +S + QE+
Sbjct: 24 RGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVS-MLFQEN 80
Query: 745 VHSPQVTIEE--SLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGL 802
+T+ + L + L+L + QR + + + + ++ L L PG L
Sbjct: 81 NLFSHLTVAQNIGLGLNPGLKL----NAAQREK-LHAIARQMGIEDLLARL---PGQ--L 130
Query: 803 STEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
S QR+R+ +A LV I+ +DEP S LD
Sbjct: 131 SGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 7e-07
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 17/175 (9%)
Query: 687 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVH 746
G + G +GAGKTTL+ VLAG G I+I G + +R Y+
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 747 SPQVTIEESLWFSANL--RLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804
++ E+L F L R K++ +++V L LV LS
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGS--------ALAIVGLAGYEDTLVRQ-----LSA 140
Query: 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 859
Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 141 GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 8e-07
Identities = 50/171 (29%), Positives = 86/171 (50%), Gaps = 18/171 (10%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY----IEGDIKISGY--- 726
K L N++ + +TA +G SG GK+TL+ R Y EG+I + G
Sbjct: 25 KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTF-NRMYELYPEQRAEGEILLDGENIL 83
Query: 727 -PKEQSTF--ARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSL 783
PK+ A++ G V Q+ P ++I +++ F +RL +++S+ + E VE ++
Sbjct: 84 TPKQDIALLRAKV-GMVFQKPTPFP-MSIYDNIAFG--VRLFEKLSRAEMDERVEWALTK 139
Query: 784 VEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
L + ++ L S + LS Q++RL IA + P ++ +DEP S LD
Sbjct: 140 AALWNEVKDKLHQS--GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 8e-07
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 17/188 (9%)
Query: 687 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY------PKEQS---TFARIS 737
PG + A++G +G+GK+TL LAGR+ G ++ G P++++ F
Sbjct: 26 PGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQ 85
Query: 738 GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL--DSLRHALVG 795
VE V S Q ++ +L + R + + + + +EE ++L+++ D L ++
Sbjct: 86 YPVEIPGV-SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV-- 142
Query: 796 SPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVV 855
+ G S ++KR I V P + +DE SGLD A IV V + D R+ +
Sbjct: 143 ---NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFI 199
Query: 856 CTIHQPSI 863
H I
Sbjct: 200 IVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 9e-07
Identities = 46/181 (25%), Positives = 68/181 (37%), Gaps = 56/181 (30%)
Query: 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQT-DNHIA 60
L G G+GK+TL LAG + SGSI NG + + +++ Y+ Q D +
Sbjct: 29 IALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLF 85
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLE----KERHIRPNPEIDAFMKASSVGGKK 116
+VRE L + A + A + L L+ KERH P
Sbjct: 86 TDSVREELLLGLKELDAGNEQAETV--LKDLDLYALKERH--P----------------- 124
Query: 117 HSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGL 176
L L SGGQK+R+ ++ + L DE ++GL
Sbjct: 125 -------------LSL--------------SGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157
Query: 177 D 177
D
Sbjct: 158 D 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 9e-07
Identities = 55/241 (22%), Positives = 93/241 (38%), Gaps = 44/241 (18%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWEL------DEFQVQRASAYIGQ 54
++GP G+GKSTLL + ++ + SGSI G ++ +++R I Q
Sbjct: 30 FVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQ 86
Query: 55 TDNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVG- 113
N I LTV E + R G ++ + + + +KER A VG
Sbjct: 87 HYNLIERLTVLENV-LHGRL-GYKPTWRSLLGRFSEEDKER---------ALSALERVGL 135
Query: 114 GKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEIS 173
K D +SGGQ++RV + + DE
Sbjct: 136 ADKAYQRADQ----------------------LSGGQQQRVAIARALAQQPDLILADEPI 173
Query: 174 TGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233
LD T+ Q++ ++ + T ++ L Q + D +V L G +V+ G +E
Sbjct: 174 ASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAK-KYADRIVGLKAGEIVFDGAPSE 232
Query: 234 V 234
+
Sbjct: 233 L 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 9e-07
Identities = 43/179 (24%), Positives = 63/179 (35%), Gaps = 46/179 (25%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV-QRASAYIGQTDNHIAEL 62
L+GP G GKSTLL + G L G + +G + N LD QR + Q L
Sbjct: 33 LMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTD 122
+V + L FA +++ G + +
Sbjct: 93 SVGQNLLFAL------------------------------------PATLKGNARRNAAN 116
Query: 123 YVLNVLGLD--LCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSS 179
L GLD D +SGGQ+ RV ++ K L +DE + LD +
Sbjct: 117 AALERSGLDGAFHQDPAT-------LSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 9e-07
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 23/176 (13%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L ++S F G + +VG SGAGK+TL+ ++ + EG I I G + T I
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSILIDG--VDIKTIDVI 73
Query: 737 S-----GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLR 790
G V Q+ H + T+++++ + L+ K + VE +S+V L+
Sbjct: 74 DLRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKGEKNVD-------VEYYLSIVGLNKEYA 125
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN 846
V + LS + +R++IA L NP ++ +DEPTS LD + I+ +
Sbjct: 126 TRDVKN-----LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 9e-07
Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 25/185 (13%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYP-KEQS 731
K Q L +++ +TAL+G+SG GK+T + I+G ++I G K Q
Sbjct: 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73
Query: 732 TFA--RISGYVEQEDVHSPQV---TIEESLWFSANLR-LPKEISKDQRHEFVEEVMSLVE 785
A + G V Q+ P V +I E++ ++ L + K +KD+ V + + V
Sbjct: 74 VVALRKNVGMVFQQ----PNVFVKSIYENISYAPKLHGMIK--NKDEEEALVVDCLQKVG 127
Query: 786 L-----DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
L D L+ + LS Q++RL IA L P ++ +DEPTS LD ++ ++
Sbjct: 128 LFEEVKDKLKQ------NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVI 181
Query: 841 MRAVR 845
++
Sbjct: 182 EELLK 186
|
Length = 246 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 51/233 (21%), Positives = 91/233 (39%), Gaps = 51/233 (21%)
Query: 1 MTLLLGPPGSGKSTLLLALAG--KLDGNLNKSGSITYNGWELDEFQV-QRASAYIGQTDN 57
LLGP G GK+TLL +AG + D SG I +G ++ +R + Q
Sbjct: 28 FLALLGPSGCGKTTLLRLIAGLERPD-----SGEILIDGRDVTGVPPERRNIGMVFQDYA 82
Query: 58 HIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKH 117
LTV E + F + +G P EI A ++
Sbjct: 83 LFPHLTVAENIAFGLKLRG---------------------VPKAEIRARVRE-------- 113
Query: 118 SVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE-MIVGPRKTLFMDEISTGL 176
+L ++GL+ + + +SGGQ++RV + P L +DE + L
Sbjct: 114 ------LLELVGLEG-----LLNRYPHELSGGQQQRVALARALAREPS-LLLLDEPLSAL 161
Query: 177 DSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229
D+ ++ + ++ ++ T + E L D + ++++G +V G
Sbjct: 162 DAKLREELREELKELQRELGITTIYV-THDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-06
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELD----EFQVQRASAYIGQTD 56
+ LLG G+GK+TLL + G + +SG I ++G ++ + + AY+ +
Sbjct: 31 IVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPHERARLGIAYVPEGR 87
Query: 57 NHIAELTVRETLDFAA 72
LTV E L A
Sbjct: 88 RIFPRLTVEENLLLGA 103
|
Length = 237 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKT----TLMDVLAGRKTGGYIEGDIKISG-----Y 726
+ + +S G ALVG SG+GK+ +++ +L + G I G
Sbjct: 24 EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDGEDLLAA 82
Query: 727 PKEQSTFARIS--GYVEQEDVHS--PQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMS 782
+ Q R + G + QE + S P TI + L + LRL + +S+ E++
Sbjct: 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQL--AEVLRLHRGLSRAAARARALELLE 140
Query: 783 LVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
LV + L P LS QR+R+ IA+ L P ++ DEPT+ LD
Sbjct: 141 LVGIPEPEKRLDAYP--HELSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 20/156 (12%)
Query: 690 LTALVGSSGAGKTT-------LMDVLAGRKTGG---YIEGDIKISGYPKEQSTFARIS-G 738
+TA++G SG GK+T +++++ KT G Y + +I Y E+ R + G
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE---LRTNVG 108
Query: 739 YVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL-DSLRHALVGSP 797
V Q+ P+ +I +++ + + K+ K E VE+ + + D L+ L
Sbjct: 109 MVFQKPNPFPK-SIYDNVTYGPKIHGIKD--KKTLDEIVEKSLRGAAIWDELKDRL--HD 163
Query: 798 GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
++GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 164 NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 51/185 (27%)
Query: 690 LTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQ 742
+TA +G SG GK+T + D + K ++G++ I G
Sbjct: 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDGI---------------- 72
Query: 743 EDVHSPQVTI-----EESLWFSANLRLPKEI---------------SKDQRHEFVEEVMS 782
DV+S + + + F PK I +K + E VE+ ++
Sbjct: 73 -DVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLT 131
Query: 783 LVEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 841
V L + L L S +F LS Q++RL IA + P+++ MDEP S LD A ++
Sbjct: 132 SVGLWEELGDRLKDS--AFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIE 189
Query: 842 RAVRN 846
++
Sbjct: 190 NLIQE 194
|
Length = 251 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 50/250 (20%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNK-----SGSITYNGWELDEFQVQRASAYIGQT 55
+T LLG G+GKSTLL ALAG L G +G +T NG L R
Sbjct: 29 VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR-------- 80
Query: 56 DNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGK 115
+A L A Q A +FA +++ L + H R +A ++ +
Sbjct: 81 ---LARLR-------AVLPQAAQPAFAFSAREIVLLGRYPHAR---------RAGALTHR 121
Query: 116 KHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVT----------TGEMIVGPRK 165
++ L + G + +VG ++ +SGG+ RV + PR
Sbjct: 122 DGEIA-WQALALAG----ATALVGRDVTT-LSGGELARVQFARVLAQLWPPHDAAQPPR- 174
Query: 166 TLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYL 225
L +DE + LD + +++ VR + L A++ P D + +L+DG +
Sbjct: 175 YLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVL-AIVHDPNLAARHADRIAMLADGAI 233
Query: 226 VYQGPRAEVL 235
V G A+VL
Sbjct: 234 VAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 55/203 (27%), Positives = 96/203 (47%), Gaps = 21/203 (10%)
Query: 687 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGY----VEQ 742
G + AL+G +GAGK+TLM ++AG G ++I G P + T A+ V Q
Sbjct: 36 AGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAKAHQLGIYLVPQ 93
Query: 743 EDVHSPQVTIEESLWFSANLRLPKEISKDQR-HEFVEEVMSLVELDSLRHALVGSPGSFG 801
E + P ++++E++ F LPK + Q+ + + + ++LDS S GS
Sbjct: 94 EPLLFPNLSVKENILF----GLPKRQASMQKMKQLLAALGCQLDLDS-------SAGS-- 140
Query: 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQP 861
L R+ + I L+ + I+ +DEPT+ L + +R + G +V H+
Sbjct: 141 LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL 200
Query: 862 SIEIFEAFDELLLMKRGGRVIYG 884
EI + D + +M+ G + G
Sbjct: 201 P-EIRQLADRISVMRDGTIALSG 222
|
Length = 510 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 51/209 (24%), Positives = 81/209 (38%), Gaps = 52/209 (24%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAY----IG--- 53
L+GP G+GKSTLL + + L SG+I NG ++ + + RA Y IG
Sbjct: 29 FVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDLR-GRAIPYLRRKIGVVF 84
Query: 54 QTDNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVG 113
Q + + V E + FA G P EI + A
Sbjct: 85 QDFRLLPDRNVYENVAFALEVTGV---------------------PPREIRKRVPA---- 119
Query: 114 GKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEIS 173
L ++GL + +SGG+++RV IV L DE +
Sbjct: 120 ----------ALELVGLSHKHRA-----LPAELSGGEQQRVAIARAIVNSPTILIADEPT 164
Query: 174 TGLDSSTTFQIVKCVRNFVHQMDATALMA 202
LD TT++I+ + +++ T ++A
Sbjct: 165 GNLDPDTTWEIMN-LLKKINKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 55/239 (23%), Positives = 92/239 (38%), Gaps = 69/239 (28%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWEL--DEFQVQRASAYIGQTDNHIAE 61
LLGP G+GK+T L LAG L+ + +G T +G+++ + + +R ++ +
Sbjct: 36 LLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDR 92
Query: 62 LTVRETLDFAARCQGAN-DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
LT RE L++ A G D A +++L ++ +
Sbjct: 93 LTARENLEYFAGLYGLKGDELTARLEELADRL---------GMEELL------------- 130
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD--- 177
D VG G S G +++V +V L +DE +TGLD
Sbjct: 131 --------------DRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMA 171
Query: 178 SSTTFQIV-------KCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229
+ + + KC+ H M E L D +V+L G +VY+G
Sbjct: 172 TRALREFIRQLRALGKCILFSTHIMQ------------EVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 2e-06
Identities = 61/250 (24%), Positives = 91/250 (36%), Gaps = 72/250 (28%)
Query: 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV-QRASAYIG---QTDN 57
LLG G+GK+TLL + G L +SGSI ++G ++ +RA A IG +
Sbjct: 29 VALLGRNGAGKTTLLKTIMGLLPP---RSGSIRFDGRDITGLPPHERARAGIGYVPEGRR 85
Query: 58 HIAELTVRETLDFAARCQGANDSFAAYIKDL----TRLEKERHIRPNPEIDAFMKASSVG 113
ELTV E L A A ++ + RL KER
Sbjct: 86 IFPELTVEENLLLGAYA-RRRAKRKARLERVYELFPRL-KER------------------ 125
Query: 114 GKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEIS 173
L L SGG+++ + ++ K L +DE S
Sbjct: 126 -----------RKQLAGTL--------------SGGEQQMLAIARALMSRPKLLLLDEPS 160
Query: 174 TGLDSSTTFQIVKCVRNFVHQMDATALM-------ALLQPPPETFELFDDLVLLSDGYLV 226
GL +I + +R + T L+ AL E+ D +L G +V
Sbjct: 161 EGLAPKIVEEIFEAIRE-LRDEGVTILLVEQNARFAL--------EIADRAYVLERGRVV 211
Query: 227 YQGPRAEVLE 236
+G AE+L
Sbjct: 212 LEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 35/234 (14%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKEQSTFAR 735
L N++ G ALVG SG+GK+T+ ++L T Y EG+I + G+ T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 736 ISGYVEQEDVHSPQV-----TIEESLWFSANLRLPKE-ISKDQR----HEFVEEVMSLVE 785
+ Q + S V TI ++ ++ + +E I + R +F+ +
Sbjct: 415 LR---NQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINK------ 465
Query: 786 LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVR 845
+D+ ++G G LS QR+R+ IA L+ + I+ +DE TS LD + + A+
Sbjct: 466 MDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL- 523
Query: 846 NTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG------KLGVHSQI 893
+ + RT + H+ S E DE+L+++ G V G + GV++Q+
Sbjct: 524 DELQKNRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELLAQNGVYAQL 575
|
Length = 582 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 51/169 (30%), Positives = 74/169 (43%), Gaps = 14/169 (8%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKT---GGYIEGDIKISGY---- 726
K + L + F+ +TAL+G SG GK+T + L G I G++ + G
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76
Query: 727 PKEQSTFARIS-GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVE 785
P E R G V Q+ P E ++ LRL K E VE +
Sbjct: 77 PNEDVVQLRKQVGMVFQQPNPFPFSIYENVIY---GLRLAGVKDKAVLDEAVETSLKQAA 133
Query: 786 L-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
+ D ++ L S + LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 134 IWDEVKDHLHES--ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 26/198 (13%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE----GDIKISGY----- 726
Q L +++ G L+G SGAGK++L+ VL +E G + I+G
Sbjct: 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVL------NLLEMPRSGTLNIAGNHFDFS 69
Query: 727 ----PKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMS 782
K R G V Q+ P +T++++L A R+ +SKDQ E+++
Sbjct: 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNL-IEAPCRV-LGLSKDQALARAEKLLE 127
Query: 783 LVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 842
+ L LS Q++R+ IA L+ P ++ DEPT+ LD A ++
Sbjct: 128 RLRLKPYADRF-----PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
Query: 843 AVRNTVDTGRTVVCTIHQ 860
+R +TG T V H+
Sbjct: 183 IIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 16/154 (10%)
Query: 690 LTALVGSSGAGKTTLM-------DVLAGRKTGGYI--EGDIKISGYPKEQSTFARISGYV 740
+TAL+G SG GK+T + D++ ++ G I EG + I R G V
Sbjct: 49 VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG-LNILDSNINVVNLRREIGMV 107
Query: 741 EQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL-DSLRHALVGSPGS 799
Q+ P+ +I ++ + L+ E K E VEE ++ L D ++ L S +
Sbjct: 108 FQKPNPFPK-SIYNNI--THALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSS--A 162
Query: 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
LS Q++RL IA L P+++ +DEP S LD
Sbjct: 163 LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG---WELDEFQVQRASAYIGQ 54
+ L+GP GSGKSTLL A+AG L SG I +G +L +++R Y+ Q
Sbjct: 27 IVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 48.5 bits (117), Expect = 3e-06
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 4 LLGPPGSGKSTLLLALAG--KLDGNLNKSGSITYNGWEL--DEFQVQRASAYIGQTDNHI 59
LLGP G+GK+TL+ + G K D SG I G ++ + +V+R Y+ + +
Sbjct: 31 LLGPNGAGKTTLIKIILGLLKPD-----SGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLY 85
Query: 60 AELTVRETLDF 70
LTVRE L
Sbjct: 86 ENLTVRENLKL 96
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 41/179 (22%), Positives = 60/179 (33%), Gaps = 48/179 (26%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF--QVQRASAYIGQTDNH 58
+ GP G+GK+TLL LAG L +G + + G + +A Y+G
Sbjct: 30 ALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGI 86
Query: 59 IAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
ELT E L F G ++
Sbjct: 87 KTELTALENLHF--------------------------------------WQRFHGSGNA 108
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
+ L +GL D VG +S GQ++RV + + P +DE T LD
Sbjct: 109 ATIWEALAQVGLAGLEDLPVGQ-----LSAGQQRRVALARLWLSPAPLWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 43/179 (24%), Positives = 68/179 (37%), Gaps = 42/179 (23%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV-QRASAYIG---QTDNHI 59
++GP GSGKSTL + G G I ++G ++ E +RA A I Q I
Sbjct: 35 IMGPNGSGKSTLAYTIMG-HPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEI 93
Query: 60 AELTVRETLDFAAR-CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
+T + L A +GA +IK+L + + F++
Sbjct: 94 PGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE-----EFLERY-------- 140
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
+N G SGG+KKR ++++ K +DE +GLD
Sbjct: 141 ------VNE-----------------GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176
|
Length = 251 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 36/173 (20%)
Query: 680 NVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGY 739
NV G +TAL+G SG GK+T++ L + IEG + G
Sbjct: 31 NVFCDIPRGKVTALIGPSGCGKSTVLRSL--NRMNDLIEG--------------CSLKGR 74
Query: 740 V--EQEDVHSPQVTIEE-----SLWFSANLRLPKEISKD-----QRHEFVEEVMSLVELD 787
V + D++ P+V E + F PK I ++ + + + ++ LVE
Sbjct: 75 VLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVE-R 133
Query: 788 SLRHALVGSP-------GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
SLR A V + LS Q++RL IA + P +I MDEP S LD
Sbjct: 134 SLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 17/150 (11%)
Query: 692 ALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP---KEQSTFARISGYVEQEDVH 746
A++G +G+GK+TL +LAG T G +I I+ +P + S ++ + Q+
Sbjct: 43 AIIGENGSGKSTLAKMLAGMIEPTSG----EILINDHPLHFGDYSFRSKRIRMIFQDPNT 98
Query: 747 S--PQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804
S P++ I + L LRL ++ +QR + + E + +V L HA P L+
Sbjct: 99 SLNPRLRIGQIL--DFPLRLNTDLEPEQRRKQIFETLRMVGLLP-DHANY-YPHM--LAP 152
Query: 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDA 834
Q++R+ +A L+ P II DE + LD
Sbjct: 153 GQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 25/196 (12%)
Query: 692 ALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQ 749
L+G +GAGK+TL+ +LAG G + ++S F +P+
Sbjct: 52 GLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGF-------------NPE 98
Query: 750 VTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKR 809
+T E+++ N RL +S+ + E ++E++ EL V + S+ + R
Sbjct: 99 LTGRENIYL--NGRL-LGLSRKEIDEKIDEIIEFSELGDFIDLPVKT-----YSSGMKAR 150
Query: 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAF 869
L A+ P I+ +DE + DA R +R + G+TV+ H PS I
Sbjct: 151 LAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS-IKRLC 209
Query: 870 DELLLMKRGGRVIYGG 885
D L++++ G++ + G
Sbjct: 210 DRALVLEK-GKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 55/248 (22%), Positives = 100/248 (40%), Gaps = 58/248 (23%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWEL-----DEFQVQRAS-AYIGQ 54
M ++GP G+GKSTLL +L G +D SG I +NG ++ E + R I Q
Sbjct: 32 MVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQ 88
Query: 55 TDNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHI----RPNPEIDAFMKAS 110
N + L+V E + G ++ + ++ +K + + R A+ +AS
Sbjct: 89 QFNLVPRLSVLENVLLGRL--GYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS 146
Query: 111 SVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMD 170
+ +SGGQ++RV +V K + D
Sbjct: 147 T----------------------------------LSGGQQQRVAIARALVQQPKIILAD 172
Query: 171 EISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFEL----FDDLVLLSDGYLV 226
E LD + +++ +++ + T ++ L Q +L D ++ L G +V
Sbjct: 173 EPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-----VDLAKKYADRIIGLKAGRIV 227
Query: 227 YQGPRAEV 234
+ GP +E+
Sbjct: 228 FDGPASEL 235
|
Length = 258 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 51/202 (25%), Positives = 74/202 (36%), Gaps = 56/202 (27%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQ---RASAYIG-QTDNHI 59
++GP GSGKSTL +AG SG+I + G +L E + RA ++ Q I
Sbjct: 31 IMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89
Query: 60 AELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAF-----MKASSVGG 114
++ E L A L R R +D +KA
Sbjct: 90 PGVSNLEFLRSA-------------------LNARRSARGEEPLDLLDFLKLLKA----- 125
Query: 115 KKHSVSTDYVLNVLGLDLCSDTVVGSEMLR-----GVSGGQKKRVTTGEMIVGPRKTLFM 169
L +LG+D E L G SGG+KKR +M + K +
Sbjct: 126 ---------KLALLGMD--------EEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAIL 168
Query: 170 DEISTGLDSSTTFQIVKCVRNF 191
DEI +GLD + + +
Sbjct: 169 DEIDSGLDIDALKIVAEGINRL 190
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 50/185 (27%), Positives = 72/185 (38%), Gaps = 46/185 (24%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTL--MDVLAGRKTGG--YIEGDIKISGYP 727
E+ ++ L VS G A+VG SG GK+TL + + TGG Y +G +
Sbjct: 25 ERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKAD 83
Query: 728 KEQSTFARIS-GYVEQEDVHS--PQVTI----EESLWFSANLRLPKEISKDQRHEFVEEV 780
E R V Q S P+ + EE L + +L S +R E +
Sbjct: 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSL------SAAERREKALAM 137
Query: 781 MSLVELDSLRHALVGSPGSFGLSTE------------QRKRLTIAVELVANPSIIFMDEP 828
M+ V GL E QR+R+ IA L+ +P ++ DEP
Sbjct: 138 MAKV----------------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEP 181
Query: 829 TSGLD 833
S LD
Sbjct: 182 VSALD 186
|
Length = 327 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 14/158 (8%)
Query: 690 LTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIK-ISGYPKEQSTFARISGYVE 741
+TA++G SG GK+T + D++ T G + D + I G ++ + G V
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVF 126
Query: 742 QEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL-DSLRHALVGSPGSF 800
Q+ P+ +I +++ + L + K Q E VE+ + L D + L +
Sbjct: 127 QKPNPFPK-SIFDNIAYGPRLHGIND--KKQLEEIVEKSLRKAALWDEVSDRL--DKNAL 181
Query: 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 30/203 (14%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKEQST 732
+L+N+S G A+ G SG GK+TL+ ++A T G EG+ +S E
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGE-DVSTLKPEAYR 76
Query: 733 FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQ--RHEFVEEVMSLVELDSLR 790
++S Y Q T+E+ NL P +I + R ++ L+ +L
Sbjct: 77 -QQVS-YCAQTPALFGD-TVED------NLIFPWQIRNRRPDRAAALD----LLARFALP 123
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA----AIVMRAVRN 846
+++ + LS +++R+ + L P I+ +DE TS LD ++ R VR
Sbjct: 124 DSILTKNIT-ELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR- 181
Query: 847 TVDTGRTVVCTIHQP--SIEIFE 867
+ V+ H +I +
Sbjct: 182 --EQNVAVLWITHDKDQAIRHAD 202
|
Length = 223 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 5e-06
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 24/153 (15%)
Query: 690 LTALVGSSGAGKTTLMDVLAGRKT---GGYIEGDIKISGYPKEQSTFARISGYVEQEDVH 746
LT L+G SG GKTT++ ++AG +T G + I+ P E R V Q
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAEN----RHVNTVFQSYAL 97
Query: 747 SPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR----HALVGSPGSFGL 802
P +T+ E++ F LR+ K + V E + +V+L+ H L G
Sbjct: 98 FPHMTVFENVAFG--LRMQK-TPAAEITPRVMEALRMVQLEEFAQRKPHQLSGG------ 148
Query: 803 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 835
Q++R+ IA +V P ++ +DE S LD +
Sbjct: 149 ---QQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 46/201 (22%), Positives = 86/201 (42%), Gaps = 29/201 (14%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY------PKE 729
++L ++ + G + A++G +G+GK+TL V+AG +EGDI G P+E
Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80
Query: 730 QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLP----KEISKDQRHEFVEEVMSLVE 785
++ + Q + P V+ + L + N + E+ + E + E + LV
Sbjct: 81 RAHLGIFLAF--QYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVG 138
Query: 786 LDSLRHALVGSPGSF-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838
+D SF G S ++KR I + + + +DE SGLD A
Sbjct: 139 MDP----------SFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALK 188
Query: 839 IVMRAVRNTVDTGRTVVCTIH 859
I+ + + + +++ H
Sbjct: 189 IIAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 28/184 (15%)
Query: 690 LTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPKEQSTF-----ARIS 737
+TAL+G SG GK+T + D++ G K IEG++ G + F R
Sbjct: 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYSNNFDILELRRKI 90
Query: 738 GYVEQEDVHSPQ---VTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL-DSLRHAL 793
G V Q +P ++I +++ + + K+ K + E VE+ + L + ++ L
Sbjct: 91 GMVFQ----TPNPFLMSIYDNISYGPKIHGTKD--KKKLDEIVEQSLKKSALWNEVKDKL 144
Query: 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRT 853
+ + LS Q++RL IA L P++I MDEPTS LD + + + N ++
Sbjct: 145 --NTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTI 202
Query: 854 VVCT 857
++ T
Sbjct: 203 IIVT 206
|
Length = 254 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 47.4 bits (112), Expect = 5e-06
Identities = 39/204 (19%), Positives = 59/204 (28%), Gaps = 69/204 (33%)
Query: 687 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVH 746
PG + +VG G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 747 SPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQ 806
E + LD L +VG S
Sbjct: 39 --------------------------------EDILEEVLDQLLLIIVGG---KKASGSG 63
Query: 807 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD------TGRTVVCTI 858
RL +A+ L P ++ +DE TS LDA A+++ + TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 859 HQPSI----EIFEAFDELLLMKRG 878
+ + FD +++
Sbjct: 124 NDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 6e-06
Identities = 54/248 (21%), Positives = 89/248 (35%), Gaps = 77/248 (31%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNK--SGSITYNG---WELDEFQVQ---RASAYIGQT 55
L+G GSGKSTL A+ G L K SGSI ++G +L + + + Q
Sbjct: 36 LVGESGSGKSTLARAILG-----LLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQ- 89
Query: 56 DNHIAEL----TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASS 111
+ ++ L T+ E + R G + L + E
Sbjct: 90 -DPMSSLNPRMTIGEQIAEPLRIHGKLS--KKEARKEAVLLLLVGVGLPEE--------- 137
Query: 112 VGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI-----VGPRKT 166
VLN +L SGGQ++RV I + P K
Sbjct: 138 ------------VLNRYPHEL--------------SGGQRQRV----AIARALALNP-KL 166
Query: 167 LFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALM-----ALLQPPPETFELFDDLVLLS 221
L DE ++ LD S QI+ ++ ++ T L ++ ++ D + ++
Sbjct: 167 LIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVA------KIADRVAVMY 220
Query: 222 DGYLVYQG 229
G +V +G
Sbjct: 221 AGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 6e-06
Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 27/160 (16%)
Query: 1082 IPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLAA 1141
+ + V + +I + LL L+ L + G ++ L N A
Sbjct: 145 LGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAI 204
Query: 1142 IISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVEPTF 1201
++ S L + G L P P++P + W + I P + G++
Sbjct: 205 LVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLL---------------- 248
Query: 1202 RGTVKEYLKESLGYGPGM-VGASAAMLVAFSVFFFGIFAF 1240
+ YG + S +L+ F V +
Sbjct: 249 ----------RIIYGDLAEILLSLIILLLFGVVLLLLALL 278
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 57/236 (24%), Positives = 95/236 (40%), Gaps = 24/236 (10%)
Query: 666 RSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG 725
L +L ++ + G AL+G SG+GK+T++ +L + EG I++ G
Sbjct: 4 SDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEG 61
Query: 726 YPKEQSTF--ARISGYVEQEDVHSPQVTIEESLWF-SANL-----------RLPKEISKD 771
EQ R V ++ H Q+ + + F S NL P +
Sbjct: 62 ---EQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGM 118
Query: 772 QRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 831
R E + M L+++ L P LS Q++R+ IA L P ++ DE TS
Sbjct: 119 ARAEAEKRAMELLDMVGLADKADHMPAQ--LSGGQQQRVAIARALAMRPKVMLFDEVTSA 176
Query: 832 LDARAAAIVMRAVRN-TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
LD V+ +R + T++ H+ E D + + GR++ GK
Sbjct: 177 LDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFA-REFADRVCFFDK-GRIVEQGK 230
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 6e-06
Identities = 50/210 (23%), Positives = 95/210 (45%), Gaps = 32/210 (15%)
Query: 669 GIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVL--AGRKTGGYI--------- 717
G HE +L VS + G + +++GSSG+GK+T + + + + G I
Sbjct: 16 GEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINL 71
Query: 718 ----EGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEI---SK 770
+G +K++ + + R++ + ++ S +E + P ++ SK
Sbjct: 72 VRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM------EAPIQVLGLSK 125
Query: 771 DQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTS 830
+ E + ++ V +D A P LS Q++R++IA L P ++ DEPTS
Sbjct: 126 QEARERAVKYLAKVGIDE--RAQGKYPVH--LSGGQQQRVSIARALAMEPEVLLFDEPTS 181
Query: 831 GLDARAAAIVMRAVRNTVDTGRTVVCTIHQ 860
LD V+R ++ + G+T+V H+
Sbjct: 182 ALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 7e-06
Identities = 48/184 (26%), Positives = 87/184 (47%), Gaps = 25/184 (13%)
Query: 685 FSPGVLTALVGSSGAGKTTLMDVLAG---RKTGGYIEG--DIKISGYPKEQSTFARISGY 739
F +TA +G +GAGKTT + +L G +G + G DI+ + QS G
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL-----GM 1007
Query: 740 VEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGS 799
Q ++ +T+ E + F A L+ E E+ +++E L H + +
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLK------GRSWEEAQLEMEAMLEDTGLHHKR--NEEA 1059
Query: 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRAVRNTVDTGRTVVC 856
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++
Sbjct: 1060 QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIM 1115
Query: 857 TIHQ 860
+ H
Sbjct: 1116 STHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 8e-06
Identities = 59/204 (28%), Positives = 85/204 (41%), Gaps = 38/204 (18%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR 735
Q L NVS +TAL+G SG GK+T + L + I+ R
Sbjct: 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCL--NRMNDLIKN--------------CR 69
Query: 736 ISGYV--EQEDVHSPQVTIEE-----SLWFSANLRLPKEISKD-----QRHEFVEEVMSL 783
I G V E ED++ P V + E + F P I + + H ++ +
Sbjct: 70 IEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDG 129
Query: 784 VELDSLRHALV--------GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 835
V ++LR A + SP + LS Q++RL IA L P II DEPTS LD
Sbjct: 130 VVENALRSAALWDETSDRLKSP-ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPI 188
Query: 836 AAAIVMRAVRNTVDTGRTVVCTIH 859
+ A + + N + T+V H
Sbjct: 189 STARIEDLIMN-LKKDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (115), Expect = 8e-06
Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 18/216 (8%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG---YPK 728
E + L+ VS + G +++G +G+GK+T ++ G EG +KI G +
Sbjct: 17 ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAE 74
Query: 729 EQSTFARISGYVEQE-DVHSPQVTIEESLWFS-ANLRLPKEISKDQRHEFVEEVMSLVEL 786
R G V Q D T+E+ + F N +P+E + + V+E + V +
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPRE----EMIKRVDEALLAVNM 130
Query: 787 DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN 846
+ P LS Q++R+ +A + P II +DE TS LD +MR +
Sbjct: 131 LDFK---TREPAR--LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHE 185
Query: 847 TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882
+ + V +I E + D +L+M + G +I
Sbjct: 186 IKEKYQLTVLSITHDLDEAASS-DRILVM-KAGEII 219
|
Length = 277 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 8e-06
Identities = 49/195 (25%), Positives = 84/195 (43%), Gaps = 38/195 (19%)
Query: 684 IFSPGVLTALVGSSGAGKTTLMDVLAGR------KTGGYIEGDIKISGYP-KE-QSTFAR 735
PG + ++G +G GK+T + +LAG + D I + E Q+ F +
Sbjct: 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155
Query: 736 ISGYVEQE--DVHSPQVTIEESLWFSANLRLPKEISK---------DQRHEFVEEVMSLV 784
+ E E VH PQ ++ +PK + D+R +F +EV+ +
Sbjct: 156 L---YEGELRAVHKPQY-VD---------LIPKVVKGKVGELLKKVDERGKF-DEVVERL 201
Query: 785 ELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 844
L+++ V LS + +R+ IA L+ + + F DEP+S LD R R +
Sbjct: 202 GLENVLDRDVSE-----LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVI 256
Query: 845 RNTVDTGRTVVCTIH 859
R + G+ V+ H
Sbjct: 257 RELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 53/228 (23%), Positives = 89/228 (39%), Gaps = 46/228 (20%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWEL--DEFQVQRASAYIGQTDNHIAE 61
LLGP G+GK+T + L L SG T G ++ + +V+R + Q + E
Sbjct: 31 LLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDE 87
Query: 62 LTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVST 121
LT E L AR G V G +
Sbjct: 88 LTGWENLYIHARLYG-----------------------------------VPGAERRERI 112
Query: 122 DYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTT 181
D +L+ +GL +D +V + SGG ++R+ +V + LF+DE + GLD T
Sbjct: 113 DELLDFVGLLEAADRLVKT-----YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTR 167
Query: 182 FQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229
+ + + + T L+ E +L D + ++ G ++ +G
Sbjct: 168 AHVWEYIEKLKEEFGMTILLT-THYMEEAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY------IEGDIKISGYP 727
+L ++S PG +TAL+G +GAGK+TL+ LAG TGG + GD+ ++G P
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEP 72
|
Length = 272 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 29/190 (15%), Positives = 64/190 (33%), Gaps = 3/190 (1%)
Query: 998 RLAFTTVAALILGSVFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERT 1057
+ + + L+ G G S + + + + V + ++ R
Sbjct: 55 PILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFRE 114
Query: 1058 VFYREKAAGMYSPIPFAAAQGLVEIPYVFVQTLLFGVITYFMVNF--ERTMRKFLLYLVF 1115
+ + SP+ +PY+ V +L+ G++ + + LL L+
Sbjct: 115 REFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLL 174
Query: 1116 TFLTFSYFTFFGMMVVGLTPNQHLAA-IISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYI 1174
L G+++ +Q A + + LSG P +P W YI
Sbjct: 175 LLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYI 234
Query: 1175 SPVAWTLRGI 1184
+P+ + + +
Sbjct: 235 NPLTYAIDAL 244
|
Length = 286 |
| >gnl|CDD|222160 pfam13476, AAA_23, AAA domain | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 20/112 (17%)
Query: 685 FSPGVLTALVGSSGAGKTTLMD----VLAGRKTG-------GYIEGDIKISGYPKEQSTF 733
FS G LT + G +G+GKTT++D L G+ + G ++GDI+I ++ T+
Sbjct: 17 FSKG-LTLIYGPNGSGKTTILDAIRWALYGKTSRLKKSKGRGIVKGDIEIEKDEGKKKTY 75
Query: 734 ARISGYVEQEDVHSPQVTIEESLWFSANLRLP------KEISKDQRHEFVEE 779
I E IEES + + + D+ EF++E
Sbjct: 76 VEI--TFENNKGKLKLRLIEESRELTKKKGKKVKKSILEIVEIDELQEFIDE 125
|
Length = 204 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 53/219 (24%)
Query: 637 KKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGS 696
++ + P + ++ ++ Y +A I +Q F +TAL+G
Sbjct: 8 ERHIITFPEEEIALSTKDLHVYYGKKEA-----IKGIDMQ--------FEKNKITALIGP 54
Query: 697 SGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQE--DVHSPQVTIEE 754
SG+GK+T + L + I+ AR++G + D++ ++ + E
Sbjct: 55 SGSGKSTYLRSL--NRMNDTIDI--------------ARVTGQILYRGIDINRKEINVYE 98
Query: 755 -----SLWFSANLRLPKEISKD-----QRH---------EFVEEVMSLVEL-DSLRHALV 794
+ F K I ++ +R E VE + L D ++ L
Sbjct: 99 MRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLH 158
Query: 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
S + LS Q++RL IA + P I+ MDEP S LD
Sbjct: 159 KS--ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195
|
Length = 267 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 57/259 (22%), Positives = 98/259 (37%), Gaps = 65/259 (25%)
Query: 4 LLGPPGSGKSTLLLALAG--KLDGNLNKSGSITYNGWELDEFQVQ-RASAYIGQTDNHIA 60
LLGP G GKSTLL +AG + SG I +G ++ + + R A + Q
Sbjct: 34 LLGPSGCGKSTLLRMIAGLEEPT-----SGEILIDGRDVTDLPPEKRGIAMVFQNYALYP 88
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
+TV E N +F ++ + + E ++ ++
Sbjct: 89 HMTVYE-----------NIAFGLKLRGVPKAEIDKRVKE--------------------- 116
Query: 121 TDYVLNVLGLDLCSDTVVGSEML----RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGL 176
V +LGL+ +L +SGGQ++RV +V K +DE + L
Sbjct: 117 ---VAKLLGLE---------HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNL 164
Query: 177 DSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
D+ + ++ ++ T + E L D +V+++DG + G E+ E
Sbjct: 165 DAKLRVLMRSEIKKLHERLGTTTIYV-THDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223
Query: 237 FFESLGFRLPPRKGVADFL 255
P VA F+
Sbjct: 224 R--------PANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 58/260 (22%), Positives = 91/260 (35%), Gaps = 61/260 (23%)
Query: 4 LLGPPGSGKSTLLLALAG--KLDGNLNKSGSITYNGWELDEFQVQRASAYIG---QTDNH 58
LLGP G GK+TLL LAG + D SGSI +G ++ V +I Q+
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD-----SGSIMLDGEDVT--NVPPHLRHINMVFQSYAL 53
Query: 59 IAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
+TV E + F + + P EI + +
Sbjct: 54 FPHMTVEENVAFGLKMRKV---------------------PRAEIKPRVLEA-------- 84
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDS 178
L L +SGGQ++RV +V K L +DE + LD
Sbjct: 85 -----------LRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDK 133
Query: 179 STTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFF 238
Q+ ++ Q+ T + + E + D + ++ G + G E+ E
Sbjct: 134 KLRDQMQLELKTIQEQLGITFVF-VTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE- 191
Query: 239 ESLGFRLPPRKGVADFLQEV 258
P VA F+ E+
Sbjct: 192 -------PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 43/191 (22%)
Query: 1 MTLLLGPPGSGKSTLLLAL--AGKLDGNLNKSGSITYNGWEL-----DEFQVQRASAYIG 53
+T L+GP GSGKSTLL ++ L+ + +GSI YNG + D +++ +
Sbjct: 33 ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVF 92
Query: 54 QTDNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVG 113
Q N +++ E + + R +G IKD L++ ++ +K +S+
Sbjct: 93 QQPNPFP-MSIYENVVYGLRLKG--------IKDKQVLDE--------AVEKSLKGASI- 134
Query: 114 GKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEIS 173
D D + S + G+SGGQ++RV ++ K + +DE +
Sbjct: 135 ----------------WDEVKDRLHDSAL--GLSGGQQQRVCIARVLATSPKIILLDEPT 176
Query: 174 TGLDSSTTFQI 184
+ LD + +I
Sbjct: 177 SALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 11/59 (18%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG-----WELDEFQVQRASAYIGQTDN 57
L+GP G+GKSTLL +AG L G SGSI + G W E R AY+ Q
Sbjct: 27 LVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHR--AYLSQQQT 79
|
Length = 248 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 32/227 (14%)
Query: 665 MRSKGIHEKKLQ--LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIK 722
+ S G+ ++ ++ +L N++ PG + A+VG SGAGKTTL+ ++ G + G E
Sbjct: 384 LESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRP 443
Query: 723 ISGYPK--EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEV 780
SG + + + A I G E E +VTI E L SK E+
Sbjct: 444 DSGKVEVPKNTVSALIPGEYEPE---FGEVTILEHLR-----------SKTGDLNAAVEI 489
Query: 781 MSLVELDS--LRHALVGSPGSFG-LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 837
++ L L F LST Q++R +A L P+++ +DE + LD A
Sbjct: 490 LNRAGLSDAVLYRR------KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTA 543
Query: 838 AIVMRAVRNTV-DTGRTVVCTIHQPSIEIFEAF--DELLLMKRGGRV 881
V R + + G T++ H+P E+ A D L+L+ G
Sbjct: 544 VRVARKISELAREAGITLIVVTHRP--EVGNALRPDTLILVGYGKVP 588
|
Length = 593 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 49/189 (25%), Positives = 86/189 (45%), Gaps = 14/189 (7%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQST 732
Q L V+ PG + L G SGAGK+TL+ ++ G R + G I I+ +
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 733 FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHA 792
F R + +D H + ++ +++ N+ +P I+ + V + LD +
Sbjct: 76 FLRRQIGMIFQDHH---LLMDRTVY--DNVAIPLIIAGASGDDIRRRVSA--ALDKV--G 126
Query: 793 LVGSPGSF--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT 850
L+ +F LS +++R+ IA +V P+++ DEPT LD + ++R
Sbjct: 127 LLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV 186
Query: 851 GRTVVCTIH 859
G TV+ H
Sbjct: 187 GVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 65/271 (23%), Positives = 113/271 (41%), Gaps = 42/271 (15%)
Query: 650 MTFHNISY-YVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVL 708
+ F ++S+ Y D+ + L+++S G TAL+G +G+GK+T+
Sbjct: 6 VEFKHVSFTYPDSKKPA------------LNDISFSIPRGSWTALIGHNGSGKSTI---- 49
Query: 709 AGRKTGGYIEGD------IKISGYPKEQSTFARIS---GYVEQE-DVHSPQVTIEESLWF 758
+ G + D I + G T I G V Q D T+ + + F
Sbjct: 50 -SKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAF 108
Query: 759 S-ANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELV 817
N +P+ + + +V L +DS P + LS Q++R+ IA L
Sbjct: 109 GLENRAVPRPEMIKIVRDVLADVGMLDYIDS-------EPAN--LSGGQKQRVAIAGILA 159
Query: 818 ANPSIIFMDEPTSGLDARAAAIVMRAVRN-TVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876
P II +DE TS LD +++ +R TV+ H I+ D++L++
Sbjct: 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITH--DIDEANMADQVLVLD 217
Query: 877 RGGRVIYGGKLGVHSQIMIDYFQGLDGIPLI 907
G + G + + S++ + GLD IP +
Sbjct: 218 DGKLLAQGSPVEIFSKVEMLKEIGLD-IPFV 247
|
Length = 282 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 47/185 (25%), Positives = 68/185 (36%), Gaps = 50/185 (27%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRAS-------AYIG 53
M ++G GSGKSTLL + G L+ SG + NG E ++AS Y+
Sbjct: 26 MYAIIGESGSGKSTLLNII-GLLEK--FDSGQVYLNGQETPPLNSKKASKFRREKLGYLF 82
Query: 54 QTDNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVG 113
Q I TV E LD Y K L++ EK +
Sbjct: 83 QNFALIENETVEENLDLG----------LKYKK-LSKKEKREKKK--------------- 116
Query: 114 GKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEIS 173
L +GL+L + +SGG+++RV I+ P + DE +
Sbjct: 117 ---------EALEKVGLNLKLKQKIYE-----LSGGEQQRVALARAILKPPPLILADEPT 162
Query: 174 TGLDS 178
LD
Sbjct: 163 GSLDP 167
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 60/253 (23%), Positives = 103/253 (40%), Gaps = 53/253 (20%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAEL 62
+LGP GSGKS LL +AG + + SG I NG ++ +R +Y+ Q +
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHM 86
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTD 122
TV + + + + + + + E ER + EI + D
Sbjct: 87 TVYKNIAYGLK-----------KRKVDKKEIERKVL---EIAEMLG------------ID 120
Query: 123 YVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTF 182
++LN L SGG+++RV +V K L +DE + LD T
Sbjct: 121 HLLNRKPETL--------------SGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKE 166
Query: 183 QIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESLG 242
++ + ++ + T L + E + L D + ++ +G L+ G EV
Sbjct: 167 KLREELKKIRKEFGVTVLH-VTHDFEEAWALADKVAIMLNGKLIQVGKPEEV-------- 217
Query: 243 FRLPPRKGVADFL 255
F+ P + VA+FL
Sbjct: 218 FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 3e-05
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ 44
+ +LGP G+GKSTLL AL+G+L SG + NG L ++
Sbjct: 30 VVAILGPNGAGKSTLLRALSGELSP---DSGEVRLNGRPLADWS 70
|
Length = 258 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-05
Identities = 47/217 (21%), Positives = 99/217 (45%), Gaps = 30/217 (13%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STF 733
+LS++S T +VG SG+GK+TL +L G G+I ++G+ + T
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS--GEILLNGFSLKDIDRHTL 546
Query: 734 ARISGYVEQEDVHSPQV---TIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL-DSL 789
+ Y+ QE P + +I E+L A + ++ + + E+ D +
Sbjct: 547 RQFINYLPQE----PYIFSGSILENLLLGAKENVSQDE--------IWAACEIAEIKDDI 594
Query: 790 RHALVG-----SPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 844
+ +G S +S Q++R+ +A L+ + ++ +DE TS LD ++ +
Sbjct: 595 ENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL 654
Query: 845 RNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRV 881
N D +T++ H+ + + + D+++++ G +
Sbjct: 655 LNLQD--KTIIFVAHR--LSVAKQSDKIIVLDHGKII 687
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 4e-05
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 12/76 (15%)
Query: 667 SKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 726
SK K L L ++S +PG LVG +GAGK+TL+ ++AG EG +
Sbjct: 7 SKTYGGKLL--LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP--DEGIVTWGST 62
Query: 727 PKEQSTFARISGYVEQ 742
K GY EQ
Sbjct: 63 VK--------IGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-05
Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 34/216 (15%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ------- 730
L NV+ PG + + G +G+GK+TL+ ++ ++ EGDI+ P +
Sbjct: 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLI--QRHFDVSEGDIRFHDIPLTKLQLDSWR 388
Query: 731 STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSL--VELDS 788
S A +S Q S + N+ L + D + +E V L V D
Sbjct: 389 SRLAVVS-----------QTPFLFSDTVANNIALGR---PDATQQEIEHVARLASVHDDI 434
Query: 789 LR-----HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 843
LR VG G LS Q++R++IA L+ N I+ +D+ S +D R ++
Sbjct: 435 LRLPQGYDTEVGERGVM-LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHN 493
Query: 844 VRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879
+R + GRTV+ + H+ S + EA E+L+M+ G
Sbjct: 494 LRQWGE-GRTVIISAHRLS-ALTEA-SEILVMQHGH 526
|
Length = 569 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 33/196 (16%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KEQST 732
L S +S + G L + G +GAGKT+L+ +LAG R G++ G P +++
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQGEPIRRQRDE 71
Query: 733 FARISGYVEQEDVHSPQV----TIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS 788
+ + Y+ H P + T E+L F RL + E + +V
Sbjct: 72 YHQDLLYLG----HQPGIKTELTALENLRFYQ--RLHGPGDDEALWEALAQV-------G 118
Query: 789 LR---HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVR 845
L V LS Q++R+ +A + + +DEP + +D + A + +
Sbjct: 119 LAGFEDVPVRQ-----LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLA 173
Query: 846 NTVDTGRTVVCTIHQP 861
+ G V+ T HQ
Sbjct: 174 QHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-05
Identities = 38/163 (23%), Positives = 54/163 (33%), Gaps = 51/163 (31%)
Query: 13 STLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRAS----AYIGQTDNHIAELTVRETL 68
STLL + G L SG+I +G + ++ + Q ELTVRE L
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 69 DFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVL 128
F R + A+ R E+ L +
Sbjct: 58 FFGLRDKEADA----------RAEE------------------------------ALERV 77
Query: 129 GLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDE 171
GL D + SGGQK+RV ++ K L +DE
Sbjct: 78 GLPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 5e-05
Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 9/192 (4%)
Query: 1005 AALILGSVFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKA 1064
AALILG +F + + L + AS + A + I+ +
Sbjct: 18 AALILGFLFLLLRILSRFLRRLLEFQVLVDAS----ALIIAPILYLIIFGLLFGLREGLS 73
Query: 1065 AGMYSPIPFAAAQGLVEIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFT 1124
+Y + +P V + ++LF I F R L + S +
Sbjct: 74 GRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSFSSALFREREFGTLERLLV----SPVS 129
Query: 1125 FFGMMVVGLTPNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGI 1184
+++ + P +A++I+ + L G S+ + + L +
Sbjct: 130 RLFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLL 188
Query: 1185 ISSQLGDVETMI 1196
+S+
Sbjct: 189 LSTFAKSQLQCA 200
|
Length = 286 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 5e-05
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 11/150 (7%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFARISGYVEQED 744
G TA++G +G GK+TL+ L+ T G + + G + AR G + Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKEVARRIGLLAQNA 90
Query: 745 VHSPQVTIEESLWFSANLRLPKE-ISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803
+T++E A R P + + R E E V ++ + H S + LS
Sbjct: 91 TTPGDITVQE---LVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDT--LS 145
Query: 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 6e-05
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNK--SGSITYNGWELDEFQVQRASAYIGQTDNHIAE 61
L+GP G GKSTLL +AG L + SG + +G + Y+ Q D +
Sbjct: 35 LVGPSGCGKSTLLRIIAG-----LERPTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPW 87
Query: 62 LTVRETLDFAARCQG 76
LTV + + QG
Sbjct: 88 LTVLDNVALGLELQG 102
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 6e-05
Identities = 53/239 (22%), Positives = 98/239 (41%), Gaps = 46/239 (19%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG---WELDEFQVQRASAYIGQTDN 57
++GP GSGKSTL+ L D SG I +G ++ +++ + Q D
Sbjct: 357 KVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDSLRKRIGIVSQ-DP 412
Query: 58 HIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKH 117
+ T+RE + RP+ + +A K
Sbjct: 413 LLFSGTIRENIALG--------------------------RPDATDEEIEEAL-----KL 441
Query: 118 SVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
+ + +++ N L DT+VG E +SGGQ++R+ ++ L +DE ++ LD
Sbjct: 442 ANAHEFIAN---LPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALD 497
Query: 178 SSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
+ T I ++ + T L+ + T + D +++L +G +V +G E+L
Sbjct: 498 TETEALIQDALKKLLK--GRTTLIIAHRLS--TIKNADRIIVLDNGRIVERGTHEELLA 552
|
Length = 567 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-05
Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 31/167 (18%)
Query: 682 SGIFSPGVLTALVGSSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKEQSTFARISGYV 740
G G + ++G +G GKTT + +LAG K E D+K+S P+ Y+
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQ----------YI 410
Query: 741 EQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHE--FVEEVMSLVELDSLRHALVGSPG 798
+ T+E+ L + F E++ + L+ L V
Sbjct: 411 SPD----YDGTVEDLLR---------SAIRSAFGSSYFKTEIVKPLNLEDLLERPVD--- 454
Query: 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVR 845
LS + +R+ IA L + +DEP++ LD IV + +R
Sbjct: 455 --ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 6e-05
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 26/172 (15%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKE 729
+ + L+NVS G + ++G+SGAGK+TL+ + R T G + ++ ++
Sbjct: 16 RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEK 75
Query: 730 QSTFARIS-GYVEQEDVH----SPQVTIEESLWFSANLRLPKEI---SKDQRHEFVEEVM 781
+ AR G + Q H S + T+ + N+ LP E+ K + V E++
Sbjct: 76 ELRKARRQIGMIFQ---HFNLLSSR-TVFD------NVALPLELAGTPKAEIKARVTELL 125
Query: 782 SLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
LV L P LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 126 ELVGLSDKADRY---PAQ--LSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Length = 343 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQP 861
LS +++RL A L+ P +F+DE TS LD + + + ++ + G TV+ H+P
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVGHRP 148
Query: 862 SIEIFEAFDELLLMKRGGR 880
S+ F D +L + G
Sbjct: 149 SLWKF--HDRVLDLDGEGG 165
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 6e-05
Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 47/217 (21%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR 735
++L V+ G + AL+G +G+GK+TL + G+PK + T
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIM---------------GHPKYEVTEGE 58
Query: 736 ISGYVEQEDVHSPQVTIEESLWFSANLRL------PKEISKDQRHEFVEEVMSLVELDSL 789
I + ED+ + EE A L + P EI + +F+ V
Sbjct: 59 I--LFKGEDI--TDLPPEER----ARLGIFLAFQYPPEIPGVKNADFLRYV--------- 101
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 849
+ G S ++KR I L+ P + +DEP SGLD A +V + +
Sbjct: 102 ---------NEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE 152
Query: 850 TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
G++V+ H + + D + ++ G V G K
Sbjct: 153 EGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 7e-05
Identities = 61/256 (23%), Positives = 88/256 (34%), Gaps = 83/256 (32%)
Query: 2 TLLLGPPGSGKSTLLLALAGKLDGNLNK--SGSITYNGWELDEFQVQRASAYIGQTDNHI 59
++GP GSGKSTLL + G L + SG + +G + I
Sbjct: 29 LAIIGPSGSGKSTLLRLIVG-----LLRPDSGEVLIDGED-------------------I 64
Query: 60 AELTVRETLDFAARC----QGANDSFAAYIKDLTRLE------KERHIRPNPEIDAFMKA 109
+ L+ E R Q A LT E +E EI
Sbjct: 65 SGLSEAELYRLRRRMGMLFQ-----SGALFDSLTVFENVAFPLREHTRLSEEEIR----- 114
Query: 110 SSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGV--------SGGQKKRVTTGEMIV 161
+ VL L VG LRG SGG KKRV +
Sbjct: 115 ------------EIVLEKLEA-------VG---LRGAEDLYPAELSGGMKKRVALARALA 152
Query: 162 GPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMA---LLQPPPETFELFDDLV 218
+ L DE + GLD + I +R+ ++ T++M L F + D +
Sbjct: 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL----DTAFAIADRIA 208
Query: 219 LLSDGYLVYQGPRAEV 234
+L DG +V +G E+
Sbjct: 209 VLYDGKIVAEGTPEEL 224
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 7e-05
Identities = 53/250 (21%), Positives = 92/250 (36%), Gaps = 58/250 (23%)
Query: 2 TLLLGPPGSGKSTLLLALAG--KLDGNLNKSGSITYNGWELDEFQV-QRASAYIGQTDNH 58
L+GP G+GK+TL + G K SG++ + G ++ + A I +T
Sbjct: 33 VGLIGPNGAGKTTLFNLITGFYKPS-----SGTVIFRGRDITGLPPHRIARLGIARTFQI 87
Query: 59 IA---ELTVRETLDFAARCQGANDSF---AAYIKDLTRL-EKERHIRPNPEIDAFMKASS 111
LTV E + A + K+ E+ R +
Sbjct: 88 TRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAREL-------------- 133
Query: 112 VGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDE 171
L +GL +D G+ +S GQ++R+ + K L +DE
Sbjct: 134 -------------LEFVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDE 175
Query: 172 ISTGLDSSTTFQIVKCVRNFVHQMDATAL-----MALLQPPPETFELFDDLVLLSDGYLV 226
+ GL+ T ++ + +R + T L M L+ L D +V+L+ G ++
Sbjct: 176 PAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV------MGLADRIVVLNYGEVI 229
Query: 227 YQGPRAEVLE 236
+G EV
Sbjct: 230 AEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-05
Identities = 65/253 (25%), Positives = 104/253 (41%), Gaps = 51/253 (20%)
Query: 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIG----QTDN 57
T L+G GSGKST+ + G L + N + IT +G L V +G DN
Sbjct: 36 TALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDN 95
Query: 58 HIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKH 117
TV + + F LE RP +
Sbjct: 96 QFVGATVGDDVAFG-------------------LENRAVPRP---------------EMI 121
Query: 118 SVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVT-TGEMIVGPRKTLFMDEISTGL 176
+ D + +V LD + SE +SGGQK+RV G + V P K + +DE ++ L
Sbjct: 122 KIVRDVLADVGMLDY-----IDSEP-ANLSGGQKQRVAIAGILAVEP-KIIILDESTSML 174
Query: 177 DSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL- 235
D + QI+K +R + + T ++++ E + D +++L DG L+ QG E+
Sbjct: 175 DPAGKEQILKLIRKLKKKNNLT-VISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFS 232
Query: 236 --EFFESLGFRLP 246
E + +G +P
Sbjct: 233 KVEMLKEIGLDIP 245
|
Length = 282 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 8e-05
Identities = 60/246 (24%), Positives = 100/246 (40%), Gaps = 49/246 (19%)
Query: 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNH 58
T ++G GSGKSTL L G +SG I NG+ L + +++ Y+ Q + +
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQA---RSGEILLNGFSLKDIDRHTLRQFINYLPQ-EPY 558
Query: 59 IAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
I ++ E L A+ N D A +
Sbjct: 559 IFSGSILENLLLGAK-------------------------ENVSQDEIWAACEIA----E 589
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDS 178
+ D LG T + SE +SGGQK+R+ ++ K L +DE ++ LD+
Sbjct: 590 IKDDIENMPLGYQ----TEL-SEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDT 644
Query: 179 STTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE-- 236
T +IV N ++ D T + + + D +++L G ++ QG E+L+
Sbjct: 645 ITEKKIVN---NLLNLQDKTII--FVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRN 699
Query: 237 -FFESL 241
F+ SL
Sbjct: 700 GFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-05
Identities = 45/192 (23%), Positives = 71/192 (36%), Gaps = 47/192 (24%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWEL--DEFQVQRASAYIGQTDNHIAE 61
LGP G+GK+T + L L SG+ G+++ + +V+R+ + Q + +
Sbjct: 24 FLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80
Query: 62 LTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVST 121
LT RE L+ R G L + E E E+
Sbjct: 81 LTGRENLEMMGRLYG-----------LPKDEAEERAE---EL------------------ 108
Query: 122 DYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG-EMIVGPRKTLFMDEISTGLDSST 180
L+L + SGG ++R+ +I P LF+DE +TGLD T
Sbjct: 109 --------LELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPD-VLFLDEPTTGLDPRT 159
Query: 181 TFQIVKCVRNFV 192
I +R
Sbjct: 160 RRAIWDYIRALK 171
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 9e-05
Identities = 50/243 (20%), Positives = 90/243 (37%), Gaps = 54/243 (22%)
Query: 2 TLLLGPPGSGKSTLLLALAGKLDGNLNK--SGSITYNG-----WELDEFQVQRASAYIGQ 54
T L+GP G GKSTLL L D G + +G ++D +++R + Q
Sbjct: 29 TALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQ 88
Query: 55 TDNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGG 114
N ++ + + + R G I+ E+D ++ +
Sbjct: 89 KPNPFP-GSIYDNVAYGLRLHG--------------------IKLKEELDERVEEA---- 123
Query: 115 KKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEIST 174
L L D V G+SGGQ++R+ + + L +DE ++
Sbjct: 124 ----------LRKAALW---DEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTS 170
Query: 175 GLDSSTTFQIVKCVRNFVHQMDATALMA---LLQPPPETFELFDDLVLLSDGYLVYQGPR 231
LD +T +I + + + T ++ + Q + D L +G LV GP
Sbjct: 171 ALDPISTAKIEELIAELKKEY--TIVIVTHNMQQ----AARVADRTAFLLNGRLVEFGPT 224
Query: 232 AEV 234
++
Sbjct: 225 EQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 9e-05
Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 51/242 (21%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNK--SGSITYNGWELDEFQVQRASAYIGQTDNH 58
+ LLGP GSGK+TLL +AG L + SG+I + G + + VQ + +G H
Sbjct: 30 LVALLGPSGSGKTTLLRLIAG-----LERPDSGTILFGGEDATDVPVQERN--VGFVFQH 82
Query: 59 IA---ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGK 115
A +TV + + F R K R RP + + K
Sbjct: 83 YALFRHMTVFDNVAFGLR------------------VKPRSERPP--------EAEIRAK 116
Query: 116 KHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE-MIVGPRKTLFMDEIST 174
H +L ++ LD +D +SGGQ++RV + V P K L +DE
Sbjct: 117 VHE-----LLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEP-KVLLLDEPFG 165
Query: 175 GLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234
LD+ ++ + +R ++ T + + E E+ D +V+++ G + G EV
Sbjct: 166 ALDAKVRKELRRWLRRLHDELHVTTVF-VTHDQEEALEVADRVVVMNKGRIEQVGTPDEV 224
Query: 235 LE 236
+
Sbjct: 225 YD 226
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 9e-05
Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 54/243 (22%)
Query: 4 LLGPPGSGKSTLLLALAGKL---DGNLNKSGSITYNG---WELDEFQVQRASAYIGQTDN 57
++GP GSGKSTLL L + D + G + Y G +++D ++++ + Q N
Sbjct: 41 IMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100
Query: 58 HIAELTVRETLDFAARCQGAND--SFAAYIKDLTR---LEKERHIRPNPEIDAFMKASSV 112
L++ + + + + G + +++ R L KE + R N AS +
Sbjct: 101 PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNS------PASQL 154
Query: 113 GGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEI 172
SGGQ++R+T + K L MDE
Sbjct: 155 ----------------------------------SGGQQQRLTIARALALKPKVLLMDEP 180
Query: 173 STGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRA 232
++ +D + I K + +++ A++ + P + + D + L +G LV G
Sbjct: 181 TSMIDIVNSQAIEKLITELKNEI---AIVIVSHNPQQVARVADYVAFLYNGELVEWGSSN 237
Query: 233 EVL 235
E+
Sbjct: 238 EIF 240
|
Length = 257 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 16/195 (8%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYI----EGD-IKISGY 726
+L +L NVS + G L G SG+GK+TL+ L G I EG+ + +
Sbjct: 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82
Query: 727 PKEQSTFARIS--GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLV 784
+ R + GYV Q P+V+ +L A L + + ++ ++++ +
Sbjct: 83 EPREVLEVRRTTIGYVSQFLRVIPRVS---ALDVVAEPLLARGVPREVARAKAADLLTRL 139
Query: 785 ELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 844
L +L +P +F S +++R+ IA + + I+ +DEPT+ LDA A+V+ +
Sbjct: 140 NLPERLWSL--APATF--SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELI 195
Query: 845 RNTVDTGRTVVCTIH 859
R G +V H
Sbjct: 196 REAKARGAALVGIFH 210
|
Length = 235 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 147 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATAL-----M 201
SGG ++RV + K L DE +T LD + QI+ ++ + + +
Sbjct: 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL 214
Query: 202 ALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
++ E+ D + ++ G +V +GP E+ +
Sbjct: 215 GVV------AEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 64/254 (25%), Positives = 104/254 (40%), Gaps = 82/254 (32%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ---VQRASAYIGQTDNHIA 60
++GP GSGKST+L L D + SGSI +G ++ E ++RA + Q
Sbjct: 32 IVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVTLDSLRRAIGVVPQ------ 82
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNP---EIDAFMKASSVGGKKH 117
+T+ F ND+ I R+ RP+ E+ KA+ + K
Sbjct: 83 -----DTVLF-------NDTIGYNI---------RYGRPDATDEEVIEAAKAAQIHDKIM 121
Query: 118 SVSTDYVLNVLGLDLCSDTVVGSEMLRGV--SGGQKKRVTTGEMIVGPRKTLFMDEISTG 175
Y DT+VG RG+ SGG+K+RV I+ L +DE ++
Sbjct: 122 RFPDGY-----------DTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSA 167
Query: 176 LDSSTTFQIVKCVRN--------FV-HQ----MDATALMALLQPPPETFELFDDLVLLSD 222
LD+ T +I +R+ + H+ ++A D +++L D
Sbjct: 168 LDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNA-----------------DKIIVLKD 210
Query: 223 GYLVYQGPRAEVLE 236
G +V +G E+L
Sbjct: 211 GRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 58/244 (23%), Positives = 82/244 (33%), Gaps = 65/244 (26%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG-----WELDEFQVQRASAYIGQTDNH 58
L+GP G+GKSTLL +AG G SGSI + G W E R AY+ Q
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSATELARHR--AYLSQQQTP 83
Query: 59 IAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
+ V L + D TR E
Sbjct: 84 PFAMPVWHYL-------------TLHQPDKTRTEL------------------------- 105
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI--VGPR-----KTLFMDE 171
+ V L LD D + +SGG+ +RV ++ + P + L +DE
Sbjct: 106 --LNDVAGALALD---DKL--GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDE 158
Query: 172 ISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPR 231
LD + + + + Q A++ T LL G L+ G R
Sbjct: 159 PMNSLDVAQQSALDRLLSALCQQ--GLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRR 216
Query: 232 AEVL 235
EVL
Sbjct: 217 EEVL 220
|
Length = 248 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 63/265 (23%), Positives = 104/265 (39%), Gaps = 55/265 (20%)
Query: 4 LLGPPGSGKSTLL---LALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
L+GP GSGKST+L + L +G + G Y+ + V ++ Q N I
Sbjct: 31 LIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90
Query: 61 ELTVRETLDFAARCQGANDSFA-AYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSV 119
+ L F + N + A + + R E E K ++
Sbjct: 91 MVFQSFNL-FPHKTVLDNVTEAPVLVLGMARAEAE---------------------KRAM 128
Query: 120 STDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSS 179
+L+++GL +D M +SGGQ++RV + K + DE+++ LD
Sbjct: 129 E---LLDMVGLADKADH-----MPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE 180
Query: 180 TTFQIVKCVRNFVHQMDATALMALLQPPPETFEL-----FDDLVLLSD-GYLVYQGPRAE 233
+++ +R + D T L+ T E+ F D V D G +V QG E
Sbjct: 181 LVGEVLNVIRRLASEHDLTMLLV-------THEMGFAREFADRVCFFDKGRIVEQGKPDE 233
Query: 234 VLEFFESLGFRLPPRKGVADFLQEV 258
+ FR P + +FL +V
Sbjct: 234 I--------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 44/215 (20%), Positives = 86/215 (40%), Gaps = 56/215 (26%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 737
L N+ VL + G SG+GK+TL+ G Y G ++ +
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLP--------- 55
Query: 738 GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSP 797
S I F++++ L+++ L + +G
Sbjct: 56 -------KFSRNKLI-----------------------FIDQLQFLIDV-GLGYLTLGQK 84
Query: 798 GSFGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVV 855
S LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G TV+
Sbjct: 85 LS-TLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVI 143
Query: 856 CTIHQPSIEIFEAFDELLLM-----KRGGRVIYGG 885
H ++ + D ++ K GG+V++ G
Sbjct: 144 LIEHNL--DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 31/167 (18%)
Query: 683 GIFSPGVLTALVGSSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKEQSTFARISGYV 740
G S + ++G +G GKTT + +LAG G IE ++ Y K Q A G V
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-KPQYIKADYEGTV 78
Query: 741 EQEDVHSPQVTIEESLWFSANLRLPKEISKD--QRHEFVEEVMSLVELDSLRHALVGSPG 798
L I+KD F E+ ++++ + V
Sbjct: 79 RD---------------------LLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPE-- 115
Query: 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVR 845
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 116 ---LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 25/171 (14%)
Query: 680 NVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKEQ------ 730
NV+ + +L+G +GAGKTT+ + L G + TGG I + I G P Q
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82
Query: 731 -STFARISGYVEQ---EDVHSPQVTIEESLWFSANLRLP----KEISKDQRHEFVEEVMS 782
TF + + E E++ Q ++ FS L+ P E R E +
Sbjct: 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVG 142
Query: 783 LVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
L+E + R A G+ L+ Q++RL IA +V P I+ +DEP +GL+
Sbjct: 143 LLEHAN-RQA--GN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-04
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG---WELDEFQVQRASAYIGQ 54
+ +LGP G+GKSTLL LAG L SG I +G L ++ R AY+ Q
Sbjct: 27 IVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNK--SGSITYNGWELDEFQVQ-----RASAYIG 53
+ LLGP GSGKSTLL +AG L + SGSI +G +L + + + R +
Sbjct: 28 IVALLGPSGSGKSTLLRCIAG-----LEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVF 82
Query: 54 QTDNHIAELTVRETLDFA 71
Q LTV E +
Sbjct: 83 QDFALFPHLTVLENIALG 100
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNK--SGSITYNGWELDEFQVQRASAYIGQTDNHIAE 61
+LGP G GKSTLL +AG L K SG + +G + Y+ Q D +
Sbjct: 34 ILGPSGCGKSTLLRLIAG-----LEKPTSGEVLLDGRPVTGPGPDI--GYVFQEDALLPW 86
Query: 62 LTVRETLDFAARCQGAN 78
LTV + + +G +
Sbjct: 87 LTVLDNVALGLELRGKS 103
|
Length = 248 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 59/238 (24%), Positives = 91/238 (38%), Gaps = 44/238 (18%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRAS---AYIGQTDN 57
+T LLGP GSGKSTLL LAG L + +G++ G +L + + A + Q +
Sbjct: 29 LTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSD 85
Query: 58 HIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKH 117
LTVR+ + L R+ + DA +
Sbjct: 86 TAVPLTVRDVVA------------------LGRIPHRSLWAGDSPHDAAV---------- 117
Query: 118 SVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
D L L +D + + +SGG+++RV + K L +DE + LD
Sbjct: 118 ---VDRALARTELSHLADRDMST-----LSGGERQRVHVARALAQEPKLLLLDEPTNHLD 169
Query: 178 SSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
+ + VR ++A L D +V+L G +V GP EVL
Sbjct: 170 VRAQLETLALVRELAA--TGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 42/179 (23%), Positives = 60/179 (33%), Gaps = 51/179 (28%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ--VQRASAYIGQTDNH 58
+ GP GSGK+TLL LAG +G + NG LD + + R Y+G
Sbjct: 28 ALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGI 84
Query: 59 IAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
L+V E L F A
Sbjct: 85 KTTLSVLENLRFWHADHSDEQVEEA----------------------------------- 109
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
L +GL+ D V +S GQ++RV +++ R +DE +T LD
Sbjct: 110 ------LARVGLNGFEDRPVAQ-----LSAGQQRRVALARLLLSGRPLWILDEPTTALD 157
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 54/256 (21%), Positives = 92/256 (35%), Gaps = 56/256 (21%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV------QRASAYIGQ 54
+T L+G G GKSTL + L+G L + G++ + G LD + Q+ +
Sbjct: 29 VTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQD 85
Query: 55 TDNHIAELTVRETLDFAARCQG-ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVG 113
+ I + + F+ R G + + L +H R P
Sbjct: 86 PEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQP------------ 133
Query: 114 GKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEIS 173
++ +S GQKKRV +V + L +DE +
Sbjct: 134 -----------------------------IQCLSHGQKKRVAIAGALVLQARYLLLDEPT 164
Query: 174 TGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233
GLD + Q++ +R V Q + + + +E+ D + +L G ++ G E
Sbjct: 165 AGLDPAGRTQMIAIIRRIVAQGNHVIISS--HDIDLIYEISDAVYVLRQGQILTHGAPGE 222
Query: 234 VL---EFFESLGFRLP 246
V E E G P
Sbjct: 223 VFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 55/250 (22%), Positives = 94/250 (37%), Gaps = 76/250 (30%)
Query: 5 LGPPGSGKSTLLLALAGKLDGNLNK--SGSITYNGWE---LDEFQVQRASAYIG---QTD 56
+G G+GKSTL+ + G L + SGS+ +G + L ++++A IG Q
Sbjct: 37 IGRSGAGKSTLIRCING-----LERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHF 91
Query: 57 NHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKK 116
N ++ TV E N + I + + E E +
Sbjct: 92 NLLSSRTVFE-----------NVALPLEIAGVPKAEIEERVLE----------------- 123
Query: 117 HSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGL 176
+L ++GL+ +D +SGGQK+RV + K L DE ++ L
Sbjct: 124 -------LLELVGLEDKADAYPAQ-----LSGGQKQRVGIARALANNPKVLLCDEATSAL 171
Query: 177 DSSTTFQIVKCVRNF-----------VHQMDATALMALLQPPPETFELFDDLVLLSDGYL 225
D TT I+ +R+ H+M+ + D + ++ G +
Sbjct: 172 DPETTQSILALLRDINRELGLTIVLITHEMEVVK------------RICDRVAVMEKGEV 219
Query: 226 VYQGPRAEVL 235
V +G EV
Sbjct: 220 VEEGTVEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 48/181 (26%), Positives = 82/181 (45%), Gaps = 29/181 (16%)
Query: 666 RSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIK 722
R+ + ++ + +S G A++G +G+GK+TL +LA G IE G++
Sbjct: 17 RTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLA-----GMIEPTSGELL 71
Query: 723 ISGYPKEQSTFARISGYVE---QEDVHS--PQVTIEESLWFSANLRLPKEISKDQRHEFV 777
I +P ++ S + Q+ S P+ I + L F LRL ++ +QR + +
Sbjct: 72 IDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFP--LRLNTDLEPEQREKQI 129
Query: 778 EEVMSLVEL-----DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 832
E + V L H L +PG Q++RL +A L+ P +I DE + L
Sbjct: 130 IETLRQVGLLPDHASYYPHML--APG-------QKQRLGLARALILRPKVIIADEALASL 180
Query: 833 D 833
D
Sbjct: 181 D 181
|
Length = 267 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-04
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 774 HEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
H+FV + E LVGS S LS Q++R++IA ++ NP I+ +DE TS LD
Sbjct: 559 HDFVSALPDKYE------TLVGSNAS-KLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
Query: 834 ARAAAIVMRAVRN 846
++ +V + + N
Sbjct: 612 NKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 48/196 (24%)
Query: 665 MRSKGIHEK--KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIK 722
+ +K +H + L +S F LTAL+G SG GK+T + L + IE +IK
Sbjct: 5 ISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCL--NRMNDDIE-NIK 61
Query: 723 ISGYPKEQSTFARISGYVEQEDVHSPQVTIEE-------------SLWFSA------NLR 763
I+G K E ++++ ++ + E FS L+
Sbjct: 62 ITGEIK-----------FEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLK 110
Query: 764 LPKEISKDQRHEFVEEVMSLVEL-----DSL-RHALVGSPGSFGLSTEQRKRLTIAVELV 817
+ K+ + VEE + + D+L R+A S G Q++R+ IA L
Sbjct: 111 IAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGG-------QQQRICIARALA 163
Query: 818 ANPSIIFMDEPTSGLD 833
P ++ +DEPTS LD
Sbjct: 164 VRPKVVLLDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-04
Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 26/187 (13%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKT-TLMDVLAGRKTGG--YIEGDIKISG----YPK 728
++++VS G ALVG SG+GK+ T + +L + Y GDI+ G +
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82
Query: 729 EQSTFARISG----YVEQEDVHS--PQVTIEESLWFSANLRLPKEISKDQRHEFVE-EVM 781
EQ T + G + QE + S P T+E+ L+ +L + R E E++
Sbjct: 83 EQ-TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH------RGMRREAARGEIL 135
Query: 782 SLVELDSLRHA---LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838
+ ++ +R A L P LS +R+R+ IA+ L+ P ++ DEPT+ LD A
Sbjct: 136 NCLDRVGIRQAAKRLTDYPHQ--LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQA 193
Query: 839 IVMRAVR 845
+++ +R
Sbjct: 194 QILQLLR 200
|
Length = 529 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 690 LTALVGSSGAGKTTLM-------DVLAG-RKTGGYIEGDIKISGYPKEQSTFARISGYVE 741
+TA +G SG GK+T++ D++ G R G + + R G V
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVF 97
Query: 742 QEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL-DSLRHALVGSPGSF 800
Q+ P+ +I +++ + A + K E VE + L D ++ L S S
Sbjct: 98 QKPNPFPK-SIYDNIAYGARI----NGYKGDMDELVERSLRQAALWDEVKDKLKQSGLS- 151
Query: 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
LS Q++RL IA + P +I MDEP S LD
Sbjct: 152 -LSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 33/163 (20%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTF 733
++LS+VS PG + L+G +GAGK+TL+ V+ G G I+ + K+
Sbjct: 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL---------- 67
Query: 734 ARISGYVEQE---DVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR 790
RI GYV Q+ D P L + LRL K+ +++ ++
Sbjct: 68 -RI-GYVPQKLYLDTTLP-------LTVNRFLRLRPGTKKE-------DILPALKRVQAG 111
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
H L+ +P LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 112 H-LIDAPMQ-KLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 3e-04
Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 38/211 (18%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 737
LS+++ G L A+VG +G GKT+L+ + G +++ I
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE--------------LSHAETSSVVIR 678
Query: 738 GYVEQEDVHSPQVTIEESLW-FSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
G V + PQV+ W F+A +R + I E E +++ +L+H L
Sbjct: 679 GSV----AYVPQVS-----WIFNATVR--ENILFGSDFE-SERYWRAIDVTALQHDLDLL 726
Query: 797 PG---------SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNT 847
PG +S Q++R+++A + +N I D+P S LDA A V +
Sbjct: 727 PGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKD 786
Query: 848 VDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
G+T V +Q + D ++L+ G
Sbjct: 787 ELKGKTRVLVTNQ--LHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 44/188 (23%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWE----LDEFQVQRASAYIG---QTD 56
L+GP G+GK+TL+ + GK + G + ++G L E ++ RA IG Q
Sbjct: 36 LIGPNGAGKTTLMDVITGKTRP---QEGEVLFDGDTDLTKLPEHRIARAG--IGRKFQKP 90
Query: 57 NHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKK 116
LTVRE L+ A FA+ L E+ R
Sbjct: 91 TVFENLTVRENLELA--LNRDKSVFASLFARLRAEERRR--------------------- 127
Query: 117 HSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGL 176
D +L +GL D + +S GQK+ + G ++ K L +DE G+
Sbjct: 128 ----IDELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
Query: 177 DSSTTFQI 184
+ T +
Sbjct: 179 TDAETEKT 186
|
Length = 249 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-04
Identities = 51/177 (28%), Positives = 73/177 (41%), Gaps = 47/177 (26%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIG---QTDNHIA 60
LLGP G+GKST+ + G + +G IT G + + + A A IG Q DN
Sbjct: 72 LLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPA-RARLARARIGVVPQFDNLDL 127
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
E TVRE L R Y TR EI+A + +
Sbjct: 128 EFTVRENLLVFGR----------YFGMSTR-----------EIEAVIPS----------- 155
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
+L L+ +D V +SGG K+R+T ++ + L +DE +TGLD
Sbjct: 156 ---LLEFARLESKADARVSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 57/262 (21%), Positives = 95/262 (36%), Gaps = 73/262 (27%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIG----QTDNHI 59
++GP G+GKSTL G L SGS+ G + + ++ ++G D+ I
Sbjct: 35 VIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 60 AELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSV 119
TV + + F G ++ A H V
Sbjct: 92 FSPTVEQDIAFGPINLGLDEETVA---------------------------------HRV 118
Query: 120 STDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSS 179
S+ L++LGL+ D V +SGG+KKRV +I + L +DE + GLD
Sbjct: 119 SS--ALHMLGLEELRDRVP-----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQ 171
Query: 180 TTFQIVKCVRNFV-----------HQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQ 228
+++ + + HQ+D MA D + ++ G +V
Sbjct: 172 GVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMA------------DYIYVMDKGRIVAY 219
Query: 229 GPRAEVL---EFFESLGFRLPP 247
G E+ + + LP
Sbjct: 220 GTVEEIFLQPDLLARVHLDLPS 241
|
Length = 277 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 4e-04
Identities = 51/218 (23%), Positives = 91/218 (41%), Gaps = 23/218 (10%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE---- 729
+ + +VS G + + G GAG+T L+ L G G + EG++ I+G P +
Sbjct: 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNP 330
Query: 730 -QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS 788
Q+ A I+ E H I L N+ L S + F + + EL
Sbjct: 331 AQAIRAGIAMVPEDRKRHG----IVPILGVGKNITL----SVLKSFCFKMRIDAAAELQI 382
Query: 789 LRHAL----VGSPGSF----GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
+ A+ V + F LS +++ +A L+ NP ++ +DEPT G+D A +
Sbjct: 383 IGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEI 442
Query: 841 MRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
+ + G ++ + E+ D +L++ G
Sbjct: 443 YKLINQLAQEGVAII-VVSSELAEVLGLSDRVLVIGEG 479
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 21/93 (22%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNK--SGSITYNGWEL----DEFQVQRASAYIGQ 54
+ + GP G+GK++LL LAG L + +G + + G + DE+ + Y+G
Sbjct: 29 LVQIEGPNGAGKTSLLRILAG-----LARPDAGEVLWQGEPIRRQRDEY--HQDLLYLG- 80
Query: 55 TDNHIA----ELTVRETLDFAARCQGANDSFAA 83
H ELT E L F R G D A
Sbjct: 81 ---HQPGIKTELTALENLRFYQRLHGPGDDEAL 110
|
Length = 204 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 23/209 (11%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKEQSTFA 734
L++VS G +++G +G+GK+T + R G +E G I I G +
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTV-----RLIDGLLEAESGQIIIDGDLLTEENVW 77
Query: 735 RIS---GYVEQE-DVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR 790
I G V Q D T+E+ + F K I ++ E V E + LV + +
Sbjct: 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGLE---NKGIPHEEMKERVNEALELVGMQDFK 134
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT 850
P LS Q++R+ IA + P II +DE TS LD +++ ++ D
Sbjct: 135 ER---EPAR--LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDD 189
Query: 851 -GRTVVCTIHQPSIEIFEAFDELLLMKRG 878
TV+ H ++ D +L+MK G
Sbjct: 190 YQMTVISITH--DLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 5e-04
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 1 MTLLLGPPGSGKSTLLLALAG---KLDGNLNKSGSITY 35
+ ++GP GSGKS+LL AL G KL G+++ GSI Y
Sbjct: 33 LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAY 70
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 5e-04
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAE 61
L++GPPGSGK+TL ALA +L I + G+ + E
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGE 64
Query: 62 LTVRETLDFAARCQ 75
L +R L A + +
Sbjct: 65 LRLRLALALARKLK 78
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 45/243 (18%), Positives = 97/243 (39%), Gaps = 30/243 (12%)
Query: 663 QAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGD 720
+ + L ++S G ++G +GAGK+TL+ ++AG + T G
Sbjct: 29 GLAKGGRKVAEF-WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT----SGK 83
Query: 721 IKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEV 780
+K++G +++ +E P++T E+++ + +++ + E V+E+
Sbjct: 84 VKVTG---------KVAPLIELGAGFDPELTGRENIYL--RGLILG-LTRKEIDEKVDEI 131
Query: 781 MSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
+ EL V + S+ RL +V P I+ +DE + DA
Sbjct: 132 IEFAELGDFIDQPVKT-----YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC 186
Query: 841 MRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQG 900
+ + V+ +T+V H I + D + ++ G + G + +I ++
Sbjct: 187 LERLNELVEKNKTIVLVSHDLGA-IKQYCDRAIWLEHGQIRMEGS-----PEEVIPAYEE 240
Query: 901 LDG 903
Sbjct: 241 DLA 243
|
Length = 249 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 6e-04
Identities = 44/175 (25%), Positives = 72/175 (41%), Gaps = 46/175 (26%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 737
LSN++ G L A+VGS+G GKT+L+ + G P I
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGE--------------LPPRSDASVVIR 678
Query: 738 GYVEQEDVHSPQVTIEESLWFSANLR------LPKEISKDQRHEFVEEVMSLVELDSLRH 791
G V + PQV S F+A +R P + + +R +++ +L+H
Sbjct: 679 GTV----AYVPQV----SWIFNATVRDNILFGSPFDPERYER---------AIDVTALQH 721
Query: 792 ALVGSPG---------SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 837
L PG +S Q++R+++A + +N + D+P S LDA
Sbjct: 722 DLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVG 776
|
Length = 1622 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 21/188 (11%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L N+S SPG L+G +G+GK+TL+ EGDI+I G
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGDIQIDGVSWNSVPL--- 72
Query: 737 SGYVEQEDVHSPQVTIEESLWFSANLRL---PKEISKDQR-HEFVEEV--MSLVEL--DS 788
Q+ + V ++ FS R P D+ + EEV S++E
Sbjct: 73 -----QKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQ 127
Query: 789 LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV 848
L LV G LS ++ + +A +++ I+ +DEP++ LD ++ + ++
Sbjct: 128 LDFVLVD--GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF 185
Query: 849 DTGRTVVC 856
++
Sbjct: 186 ADCTVILS 193
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 7e-04
Identities = 56/252 (22%), Positives = 94/252 (37%), Gaps = 80/252 (31%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNK--SGSITYNGWE---LDEFQVQRASAYIG---QT 55
++G G+GKSTLL + L + SGS+ +G + L E ++++ IG Q
Sbjct: 37 IIGYSGAGKSTLLRLINL-----LERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQH 91
Query: 56 DNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVG-- 113
N ++ TV E + F G + + E ++ + E+ VG
Sbjct: 92 FNLLSSRTVFENVAFPLELAG-----------VPKAEIKQRVAELLEL--------VGLS 132
Query: 114 GKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEIS 173
K Y + SGGQK+RV + K L DE +
Sbjct: 133 DKADR----YPAQL-------------------SGGQKQRVAIARALANNPKILLCDEAT 169
Query: 174 TGLDSSTTFQIVKCVRNF-----------VHQMDATALMALLQPPPETFELFDDLVLLSD 222
+ LD TT I++ +++ H+M+ + D + +L
Sbjct: 170 SALDPETTQSILELLKDINRELGLTIVLITHEMEVVK------------RICDRVAVLDQ 217
Query: 223 GYLVYQGPRAEV 234
G LV +G +EV
Sbjct: 218 GRLVEEGTVSEV 229
|
Length = 339 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-04
Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 45/188 (23%)
Query: 5 LGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWEL--DEFQVQRASAYIGQTDNHIAEL 62
LGP G+GKST + + G L SGS+ G ++ + +VQR Y+ + + ++
Sbjct: 34 LGPNGAGKSTTMKIITGYL---PPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTD 122
VRE L F A G +L K+R ++ ++ + ++H
Sbjct: 91 YVREYLQFIAGIYGMKG----------QLLKQR-------VEEMIELVGLRPEQH----- 128
Query: 123 YVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTF 182
+ + +S G ++RV + ++ K L +DE +TGLD +
Sbjct: 129 ------------------KKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLV 170
Query: 183 QIVKCVRN 190
+I ++N
Sbjct: 171 EIRNVIKN 178
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-04
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 34/165 (20%)
Query: 693 LVGSSGAGKTTLMDVLAGRKT--GGYI--EGDIKISGY----PK--EQSTFARISGYVEQ 742
LVG +GAGK+TLM +L G G I E D+ ++ P+ E + + ++ +E+
Sbjct: 34 LVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEE 93
Query: 743 -----EDVH--SPQVTIEESLWFSANLRLPKEISKDQRHE-------FVEEVMSLVELDS 788
+ H S V + S NL ++ + H + EV++ + LD
Sbjct: 94 QAEYLKRYHDISHLVETDPS---EKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP 150
Query: 789 LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
A + S LS ++ + LV+NP ++ +DEPT+ LD
Sbjct: 151 --DAALSS-----LSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 49/236 (20%), Positives = 79/236 (33%), Gaps = 52/236 (22%)
Query: 4 LLGPPGSGKSTLLLALAG---KLDGNLN----KSGSITYNGWELDEFQVQRASAYIGQTD 56
++GP G+GK+TLL L G G++ + G +EL R IG
Sbjct: 62 IVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETI-FEL------RKR--IGLVS 112
Query: 57 NHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKK 116
+ + E G S Y +DLT + A +
Sbjct: 113 SELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAA-------------AQWL---- 155
Query: 117 HSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGL 176
L+L + +S G+++RV +V + L +DE + GL
Sbjct: 156 -------------LELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGL 202
Query: 177 DSSTTFQIVKCVRNFVHQM---DATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229
D + + A AL+ + E F +LL +G +V QG
Sbjct: 203 D---LIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 46/175 (26%), Positives = 62/175 (35%), Gaps = 46/175 (26%)
Query: 3 LLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAEL 62
L+ G G+GK+TLL LAG L SG I +G R AY+G A+L
Sbjct: 41 LVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHLPGLKADL 97
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTD 122
+ E L F G R + P
Sbjct: 98 STLENLHFLCGLHG------------------RRAKQMP--------------------G 119
Query: 123 YVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
L ++GL DT+V R +S GQKKR+ + + P +DE LD
Sbjct: 120 SALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 29/163 (17%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
+L N++ G + A+ GS+G+GKT+L+ ++ G EG IK SG RI
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS--EGKIKHSG---------RI 100
Query: 737 SGYVEQEDVHSPQV------TIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR 790
S S Q TI+E++ F + + S + + E++ E D+
Sbjct: 101 S--------FSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDN-- 150
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
V G LS QR R+++A + + + +D P LD
Sbjct: 151 --TVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 9e-04
Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 21/226 (9%)
Query: 688 GVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEG-DI-KISGYPKEQSTFARISGYVE 741
G + ++G SG+GK+T++ +L T G I+G DI KIS + +I+ V
Sbjct: 54 GEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIA-MVF 112
Query: 742 QEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFG 801
Q P +T+ ++ F L I+ ++R E + + V L++ H P
Sbjct: 113 QSFALMPHMTVLDNTAFGMEL---AGINAEERREKALDALRQVGLENYAH---SYPDE-- 164
Query: 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM-RAVRNTVDTGRTVVCTIHQ 860
LS R+R+ +A L NP I+ MDE S LD + V+ RT+V H
Sbjct: 165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
Query: 861 PSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDY----FQGLD 902
E D + +M+ G V G + + DY F+G+D
Sbjct: 225 LD-EAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVD 269
|
Length = 400 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 0.001
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 146 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATAL----- 200
+SGG ++RV + K L DE +T LD +T QI+ +++ ++ L
Sbjct: 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD 214
Query: 201 MALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
+ ++ EL D +V++ G +V GP E+L
Sbjct: 215 LGVV------AELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 54/243 (22%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIG--QTDNH 58
L+GP GSGKSTL+ + D + SG I +G ++ ++ + IG D
Sbjct: 30 TVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLASLRRQIGLVSQDVF 86
Query: 59 IAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
+ TV E + + RP + +A+ + +
Sbjct: 87 LFNDTVAENIAYG--------------------------RPGATREEVEEAA-----RAA 115
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGV--SGGQKKRVTTGEMIVGPRKTLFMDEISTGL 176
+ ++++ L DTV+G RGV SGGQ++R+ ++ L +DE ++ L
Sbjct: 116 NAHEFIME---LPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKDPPILILDEATSAL 169
Query: 177 DSSTTFQIVKCVRNFVHQMDATALMA---LLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233
D+ + + + + T + L T E D +V+L DG +V +G E
Sbjct: 170 DTESERLVQAALERL--MKNRTTFVIAHRL-----STIENADRIVVLEDGKIVERGTHEE 222
Query: 234 VLE 236
+L
Sbjct: 223 LLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 0.001
Identities = 54/236 (22%), Positives = 101/236 (42%), Gaps = 61/236 (25%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWEL---DEFQVQRASAYIGQTDNHIA 60
L+GP G+GK++LL AL G L GS+ NG EL D ++ +++GQ + +
Sbjct: 381 LVGPSGAGKTSLLNALL----GFLPYQGSLKINGIELRELDPESWRKHLSWVGQ-NPQLP 435
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
T+R+ + A+D ++ ++ + V
Sbjct: 436 HGTLRDNVLLGN--PDASDE---------------------QLQQALENAWV-------- 464
Query: 121 TDYV-LNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSS 179
++++ L GL DT +G + G+S GQ +R+ ++ P + L +DE + LD+
Sbjct: 465 SEFLPLLPQGL----DTPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519
Query: 180 TTFQIVKCVRNFVHQMDATALM------ALLQPPPETFELFDDLVLLSDGYLVYQG 229
+ +++ + + T LM L Q +D + ++ DG +V QG
Sbjct: 520 SEQLVMQALNAASRR--QTTLMVTHQLEDLAQ--------WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 52/177 (29%), Positives = 72/177 (40%), Gaps = 47/177 (26%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIG---QTDNHIA 60
LLGP G+GKST+ L G + + G IT G E + + A IG Q DN
Sbjct: 35 LLGPNGAGKSTIARMLLGMISPD---RGKITVLG-EPVPSRARLARVAIGVVPQFDNLDP 90
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
E TVRE L F Y TR EI+A + +
Sbjct: 91 EFTVRENLLV----------FGRYFGMSTR-----------EIEAVIPS----------- 118
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
+L L+ +D V +SGG K+R+T ++ + L +DE +TGLD
Sbjct: 119 ---LLEFARLESKADVRVAL-----LSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELD----EFQVQRASAYIGQTD 56
+T +LG G GK+TLL L G L KSGSI +G ++ + + AY+ Q
Sbjct: 28 VTCVLGRNGVGKTTLLKTLMGLLPV---KSGSIRLDGEDITKLPPHERARAGIAYVPQGR 84
Query: 57 NHIAELTVRETL 68
LTV E L
Sbjct: 85 EIFPRLTVEENL 96
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 52/203 (25%), Positives = 81/203 (39%), Gaps = 42/203 (20%)
Query: 5 LGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV-QRAS--AYIGQ--TDNHI 59
+G G+GKSTLL A+AG L SG I +G ++ + V +RA+ A + Q
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94
Query: 60 AELTVRETLDFAARCQGANDSFA-AYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
ELT+ E L A +G + A + +ER R
Sbjct: 95 PELTIEENLALAE-SRGKKRGLSSALNERRRSSFRERLARLG------------------ 135
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDS 178
LGL+ +G +SGGQ++ ++ + P K L +DE + LD
Sbjct: 136 ---------LGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALDP 181
Query: 179 STTFQIVKCVRNFVHQMDATALM 201
T +++ V + T LM
Sbjct: 182 KTAEFVMELTAKIVEEHKLTTLM 204
|
Length = 263 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWEL---DEFQVQRASAYIG---QTDN 57
++GP G+GK+T++ + GK + GS+ + G +L E Q+ RA IG Q
Sbjct: 33 IIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAG--IGRKFQKPT 87
Query: 58 HIAELTVRETLDFAAR 73
LTV E L+ A
Sbjct: 88 VFENLTVFENLELALP 103
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 47/195 (24%), Positives = 92/195 (47%), Gaps = 29/195 (14%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKT----TLMDVLAGRKTGGYIEGD------- 720
++K+ + N+S G A+VG SG+GK+ LM +L + GG ++ D
Sbjct: 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL--EQAGGLVQCDKMLLRRR 83
Query: 721 ----IKISGYPKEQSTFARISG----YVEQEDVHS--PQVTIEESLWFSANLRLPKEISK 770
I++S + + + G + QE + S P T+ E + + ++RL + S+
Sbjct: 84 SRQVIELS--EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQI--AESIRLHQGASR 139
Query: 771 DQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTS 830
++ + ++ V + + L P LS R+R+ IA+ L P+++ DEPT+
Sbjct: 140 EEAMVEAKRMLDQVRIPEAQTILSRYPHQ--LSGGMRQRVMIAMALSCRPAVLIADEPTT 197
Query: 831 GLDARAAAIVMRAVR 845
LD A +++ ++
Sbjct: 198 ALDVTIQAQILQLIK 212
|
Length = 623 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.001
Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 28/159 (17%)
Query: 693 LVGSSGAGKTTLMDVLAGRKTGGYI-EGDIKISGY------PKEQSTFARISGYVEQEDV 745
LVG SG GK+TL+ ++AG + I G+I I G P + R V Q
Sbjct: 35 LVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEPAD-----RDIAMVFQNYA 86
Query: 746 HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTE 805
P +++ E++ + +R + K + E V E ++EL+ L L P LS
Sbjct: 87 LYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPL---LDRKPRE--LSGG 138
Query: 806 QRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMR 842
QR+R+ + +V P++ DEP S LDA R MR
Sbjct: 139 QRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ---MR 174
|
Length = 356 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.001
Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 50/241 (20%)
Query: 652 FHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGR 711
F N S YV TP +L N+S G L A+ GS+G+GK++L+ ++ G
Sbjct: 431 FSNFSLYV-TP--------------VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE 475
Query: 712 KTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQV------TIEESLWFSANLRLP 765
EG IK SG RIS SPQ TI++++ F +
Sbjct: 476 LEPS--EGKIKHSG---------RIS--------FSPQTSWIMPGTIKDNIIFGLSYDEY 516
Query: 766 KEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFM 825
+ S + + E++ E D V G LS QR R+++A + + + +
Sbjct: 517 RYTSVIKACQLEEDIALFPEKDK----TVLGEGGITLSGGQRARISLARAVYKDADLYLL 572
Query: 826 DEPTSGLDARAAAIVMRA--VRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883
D P + LD + + + + R +V + +E + D++LL+ G Y
Sbjct: 573 DSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTS----KLEHLKKADKILLLHEGVCYFY 628
Query: 884 G 884
G
Sbjct: 629 G 629
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 30/160 (18%)
Query: 690 LTALVGSSGAGKTTLM-------DVLAGRKTGGYIE-GDIKISGYPKEQSTFARISGYVE 741
+ A +G SG GK+TL+ D++ G K G + D I R G V
Sbjct: 48 IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVF 107
Query: 742 QEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV------- 794
Q P+ +I E++ F+ + + + + LVE DSLR A +
Sbjct: 108 QRPNPFPK-SIYENIAFAP-----------RANGYKGNLDELVE-DSLRRAAIWEEVKDK 154
Query: 795 -GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
G+ LS Q++RL IA + P ++ MDEP S LD
Sbjct: 155 LKEKGT-ALSGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193
|
Length = 274 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 70/237 (29%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNK--SGSITYNG--WELDEFQVQRASAYIGQTDNHI 59
LGP G+GK+T + + G L K SG IT++G ++ + ++R A I +
Sbjct: 31 FLGPNGAGKTTTMKIILG-----LIKPDSGEITFDGKSYQKNIEALRRIGALI---EAPG 82
Query: 60 --AELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKH 117
LT RE L AR L + K+R
Sbjct: 83 FYPNLTARENLRLLAR--------------LLGIRKKRI--------------------- 107
Query: 118 SVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
D VL+V+GL + ++G S G K+R+ ++G L +DE + GLD
Sbjct: 108 ----DEVLDVVGLK-----DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158
Query: 178 SSTTFQIVKCVRNFVHQMDA---TALMA--LLQPPPETFELFDDLVLLSDGYLVYQG 229
+K +R + + T L++ LL E ++ D + +++ G L+ +G
Sbjct: 159 P----DGIKELRELILSLRDQGITVLISSHLLS---EIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 70/322 (21%), Positives = 111/322 (34%), Gaps = 96/322 (29%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNK--SGSITYNG---WELDEFQVQRASAYIGQT 55
+L+GP GSGK+T L K+ L + SG I +G +LD +++R Y+ Q
Sbjct: 29 FLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQ 83
Query: 56 DNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGK 115
LTV E + A + L +KER I
Sbjct: 84 IGLFPHLTVAENI--------------ATVPKLLGWDKER-------IKK---------- 112
Query: 116 KHSVSTDYVLNVLGLDLCSDTVVGSEMLRG-----VSGGQKKRVTTGEMIVGPRKTLFMD 170
D +L+++GLD +SGGQ++RV + L MD
Sbjct: 113 ----RADELLDLVGLD--------PSEYADRYPHELSGGQQQRVGVARALAADPPILLMD 160
Query: 171 EISTGLDSSTTFQIVKCVRN----------FV-HQMDATALMALLQPPPETFELFDDLVL 219
E LD T Q+ + ++ FV H +D E +L D + +
Sbjct: 161 EPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID------------EALKLADRIAV 208
Query: 220 LSDGYLVYQGPRAEVL-----EFFESL------GFRLPPRKGVADFLQEVTSKKDQAKYW 268
+ G +V E+L +F E G RL VAD ++ +
Sbjct: 209 MDAGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLE 268
Query: 269 ADTSKPYVFLPVSEIANAFKSS 290
+ +S+ +S
Sbjct: 269 GFVDRD----ALSDFLARGRSV 286
|
Length = 309 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 46/242 (19%), Positives = 94/242 (38%), Gaps = 62/242 (25%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
+ LLGP G+GK+T + G L+ G IT+NG L + R Y+ +
Sbjct: 30 IFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNRI-GYLPEERGLYP 85
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
++TV + L + A +G + I+ ++ A+++ + GKK
Sbjct: 86 KMTVEDQLKYLAELKGM---------------PKAEIQ--KKLQAWLERLEIVGKKTK-- 126
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
++ +S G ++++ ++ + L +DE +GLD
Sbjct: 127 ---------------------KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVN 165
Query: 181 TFQIVKCVRNFVHQMDA--------TALMALLQPPPETFELFDDLVLLSDGYLVYQGPRA 232
V+ +++ + ++ + M ++ EL D L++L G V G
Sbjct: 166 ----VELLKDAIFELKEEGATIIFSSHRMEHVE------ELCDRLLMLKKGQTVLYGTVE 215
Query: 233 EV 234
++
Sbjct: 216 DI 217
|
Length = 300 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 51/177 (28%), Positives = 71/177 (40%), Gaps = 47/177 (26%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIG---QTDNHIA 60
LLGP G+GK+T L L G +GSI+ G + + + A +G Q DN
Sbjct: 38 LLGPNGAGKTTTLRMLLGL---THPDAGSISLCGEPVPS-RARHARQRVGVVPQFDNLDP 93
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
+ TVRE L R G + AA + L P + F K
Sbjct: 94 DFTVRENLLVFGRYFGLS---AAAARALV-----------PPLLEFAK------------ 127
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
L+ +D VG +SGG K+R+T +V L +DE +TGLD
Sbjct: 128 ---------LENKADAKVGE-----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRA 48
++G GSGKSTL LAG SGSI +G L + +A
Sbjct: 38 IVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRAKA 79
|
Length = 252 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 64/241 (26%), Positives = 101/241 (41%), Gaps = 52/241 (21%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
++G G+GKST+L L D N SGSIT +G ++ + Q IG
Sbjct: 291 TVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQSLRRAIG------- 340
Query: 61 ELTVRETLDFAARCQGANDSFAAYIK----DLTRLEKERHIRPNPEIDAFMKASSVGGKK 116
+ ++T+ F ND+ A IK D T E +I F+++ G
Sbjct: 341 -IVPQDTVLF-------NDTIAYNIKYGRPDATAEEVGAAAE-AAQIHDFIQSLPEG--- 388
Query: 117 HSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGL 176
DT VG L+ +SGG+K+RV I+ L +DE ++ L
Sbjct: 389 -----------------YDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSAL 430
Query: 177 DSSTTFQIVKCVRNFVHQMDATALMA--LLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234
D+ T I +R V T ++A L T D++++L +G +V +G E+
Sbjct: 431 DTHTEQAIQAALRE-VSAGRTTLVIAHRL-----STIIDADEIIVLDNGRIVERGTHEEL 484
Query: 235 L 235
L
Sbjct: 485 L 485
|
Length = 497 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 146 VSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQ 205
+SGGQK+RV + K L DE ++ LD +TT I++ ++ ++ T L+
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLI--- 197
Query: 206 PPPETFEL------FDDLVLLSDGYLVYQGPRAEVL 235
T E+ D + ++S+G L+ QG +E+
Sbjct: 198 ----THEMDVVKRICDCVAVISNGELIEQGTVSEIF 229
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 53/241 (21%), Positives = 97/241 (40%), Gaps = 46/241 (19%)
Query: 4 LLGPPGSGKSTLLLAL--------AGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQT 55
L+GP G GKSTLL +++G + G Y+ ++D +V+R + Q
Sbjct: 35 LMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP-DVDPIEVRREVGMVFQY 93
Query: 56 DNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGK 115
N LT+ + + + G ++ E+D ++ +
Sbjct: 94 PNPFPHLTIYDNVAIGVKLNGL-------------------VKSKKELDERVEWA----L 130
Query: 116 KHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTG 175
K + D V + L D S+ +SGGQ++R+ + K L MDE +
Sbjct: 131 KKAALWDEVKDRLN-DYPSN----------LSGGQRQRLVIARALAMKPKILLMDEPTAN 179
Query: 176 LDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
+D T +I + + F + + T ++ + P + + D + L G L+ GP +V
Sbjct: 180 IDPVGTAKIEELL--FELKKEYTIVL-VTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236
Query: 236 E 236
E
Sbjct: 237 E 237
|
Length = 253 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 43/191 (22%), Positives = 78/191 (40%), Gaps = 43/191 (22%)
Query: 1 MTLLLGPPGSGKSTLLLAL--AGKLDGNLNKSGSITYNG-----WELDEFQVQRASAYIG 53
+T L+GP G GKST L L L N+ G + +G ++D ++++ +
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 54 QTDNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVG 113
Q N +++ + + + R G IKD L+K ++ +K +++
Sbjct: 92 QKPNPFP-MSIYDNVAYGPRIHG--------IKDKKELDK--------IVEWALKKAALW 134
Query: 114 GKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEIS 173
+ V D + L L SGGQ++R+ I + MDE +
Sbjct: 135 DE---VKDDLKKSALKL----------------SGGQQQRLCIARTIAVKPDVILMDEPT 175
Query: 174 TGLDSSTTFQI 184
+ LD +T +I
Sbjct: 176 SALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASA 50
LLG GSGKSTLL L G L G IT +G + + + +S
Sbjct: 33 LLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVPVSDLEKALSSL 76
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 45/191 (23%)
Query: 1 MTLLLGPPGSGKSTLLLAL--AGKLDGNLNKSGSITYNGWEL-----DEFQVQRASAYIG 53
+T L+GP G GKST+L +L L + G + ++G +L D +V+R +
Sbjct: 41 VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVF 100
Query: 54 QTDNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVG 113
Q N + ++ E + F AR G Y D+ L ER +R KA+
Sbjct: 101 QQPNPFPK-SIYENIAFGARING-------YTGDMDEL-VERSLR---------KAAV-- 140
Query: 114 GKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEIS 173
D C D + +E +SGGQ++R+ I + + MDE
Sbjct: 141 ----------------WDECKDKL--NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPC 182
Query: 174 TGLDSSTTFQI 184
+ LD +T +I
Sbjct: 183 SALDPISTLKI 193
|
Length = 269 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 48/235 (20%), Positives = 86/235 (36%), Gaps = 52/235 (22%)
Query: 3 LLLGPPGSGKSTLLLALAGKL---DGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHI 59
+ GP G GKSTLL +A + G L G + + + ++ Q +Y QT
Sbjct: 33 AITGPSGCGKSTLLKIVASLISPTSGTLLFEGE-DVSTLKPEAYRQQ--VSYCAQTPALF 89
Query: 60 AELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSV 119
+ TV + L F + R+ RP+ A + + S+
Sbjct: 90 GD-TVEDNLIFPWQI--------------------RNRRPDR--AAALDLLARFALPDSI 126
Query: 120 STDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSS 179
T + +SGG+K+R+ + K L +DEI++ LD S
Sbjct: 127 LTKNITE-------------------LSGGEKQRIALIRNLQFMPKILLLDEITSALDES 167
Query: 180 TTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234
I + + +V + + A++ + + D ++ L G+ G E
Sbjct: 168 NKRNIEEMIHRYVREQN-VAVLWITHDKDQAIRHADKVITLQPGHA---GEMQEA 218
|
Length = 223 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 19/187 (10%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFA-- 734
+L ++S G L+G +G+GK+TL+ L + EG+I+I G T
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSWNSVTLQTW 1290
Query: 735 -RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEV--MSLVEL--DSL 789
+ G + PQ S F NL ++ S ++ + EEV S++E D L
Sbjct: 1291 RKAFGVI-------PQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKL 1343
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 849
LV G + LS ++ + +A +++ I+ +DEP++ LD I+ + ++ +
Sbjct: 1344 DFVLVD--GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS 1401
Query: 850 TGRTVVC 856
++
Sbjct: 1402 NCTVILS 1408
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.002
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 39/166 (23%)
Query: 692 ALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVH--SPQ 749
+ G G G+T L + L G + G+I + G + V SP+
Sbjct: 30 GIAGLVGNGQTELAEALFGLRP--PASGEITLDG-----------------KPVTRRSPR 70
Query: 750 VTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKR 809
I + + + +D++ E + +S+ E +L L G G+ Q+K
Sbjct: 71 DAIRAGIAY---------VPEDRKREGLVLDLSVAENIALSSLLSG--GN------QQK- 112
Query: 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVV 855
+ +A L +P ++ +DEPT G+D A A + R +R D G+ V+
Sbjct: 113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 686 SPGVLTALVGSSGAGKTTLMDVLAGR---KTGGYIEGDIK 722
S G AL+GSSG GK+TL++ L G KTG E D K
Sbjct: 193 SGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSK 232
|
Length = 356 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 0.002
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSI 863
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.003
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 147 SGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQP 206
SGG+++RV + L +DE ++ LD + ++++ +R + T +M L
Sbjct: 99 SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL 158
Query: 207 PPETFELFDDLVLLSDGYLVYQG 229
D ++LL DG +V QG
Sbjct: 159 NL-AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 67/286 (23%), Positives = 106/286 (37%), Gaps = 84/286 (29%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDE-----FQVQRASAYIGQT 55
M LLGP G+GKSTL L G L SG + G + +V++ + Q
Sbjct: 30 MVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQN 86
Query: 56 -DNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGG 114
D+ + TV E + F G L++ E E+ ++ +A G
Sbjct: 87 PDDQLFAPTVEEDVAFGPLNLG-----------LSKEEVEKRVK-----EALKAVGMEGF 130
Query: 115 KK---HSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDE 171
+ H +S GGQKKRV ++ + + +DE
Sbjct: 131 ENKPPHHLS---------------------------GGQKKRVAIAGILAMKPEIIVLDE 163
Query: 172 ISTGLDSSTTFQIVKCVRNF----------VHQMDATALMALLQPPPETFELFDDLVLLS 221
++GLD QI+K + + H +D + A D + ++S
Sbjct: 164 PTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYA------------DKVYVMS 211
Query: 222 DGYLVYQGPRAEVL---EFFESLGFRLPPRKGVADFLQEVTSKKDQ 264
DG ++ +G EV E RLP VA L E+ +K+D
Sbjct: 212 DGKIIKEGTPKEVFSDIETIRKANLRLPR---VAH-LIEILNKEDN 253
|
Length = 275 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 32/179 (17%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSIT-YNGWELDEFQVQRASAYIGQTDNHIAEL 62
L+G G+GKSTLL LAG+L+ + SG +T G + Y+ Q E
Sbjct: 34 LVGRNGAGKSTLLKILAGELEPD---SGEVTRPKGLRV---------GYLSQEPPLDPEK 81
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTD 122
TV + + + F + L LE+ + +P+ + + ++ + + +
Sbjct: 82 TVLDYVI---------EGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLE 132
Query: 123 Y----VLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
L LG D V S +SGG ++RV ++ L +DE + LD
Sbjct: 133 ARAEEALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.003
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 135 DTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNF 191
+T+VGS + +SGGQK+R++ I+ K L +DE ++ LD+ + + + K + N
Sbjct: 570 ETLVGSNASK-LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL 625
|
Length = 1466 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (96), Expect = 0.003
Identities = 43/156 (27%), Positives = 64/156 (41%), Gaps = 10/156 (6%)
Query: 690 LTALVGSSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVH 746
+TA +G SG GK+T + + L G EG+I G + + V
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 747 SPQVTIEESLWFSANLRLPKEISKDQR---HEFVEEVMSLVEL-DSLRHALVGSPGSFGL 802
E S+ F P+ + R + VE+ + L D ++ L L
Sbjct: 170 QKPTPFEMSI-FDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDL--DKAGNAL 226
Query: 803 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838
S Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.003
Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 31/156 (19%)
Query: 694 VGSSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVT 751
VG +G GKTT +LAG G ++ ++KIS Y K Q Y++ T
Sbjct: 371 VGPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ--------YIK----PDYDGT 416
Query: 752 IEESLWFSANLRLPKEISKDQRHEFVE-EVMSLVELDSLRHALVGSPGSFGLSTEQRKRL 810
+E+ L + I+ D + + E++ ++L+ L V LS + +R+
Sbjct: 417 VEDLL---------RSITDDLGSSYYKSEIIKPLQLERLLDKNVK-----DLSGGELQRV 462
Query: 811 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN 846
IA L + + +DEP++ LD V +A+R
Sbjct: 463 AIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
|
Length = 590 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.004
Identities = 53/256 (20%), Positives = 87/256 (33%), Gaps = 56/256 (21%)
Query: 4 LLGPPGSGKSTLLLALAG--KLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIA 60
L+G G GK+TLL A+AG K G +G I +L +R A + Q
Sbjct: 36 LIGKSGCGKTTLLRAIAGFVKAAG---LTGRIAIADRDLTHAPPHKRGLALLFQNYALFP 92
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
L V + + F R Q K ER
Sbjct: 93 HLKVEDNVAFGLRAQ----------KMPKADIAER------------------------- 117
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
V + L L D + + +SGG ++R+ I L +DE + LD++
Sbjct: 118 ---VADALKLVGLGD--AAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANI 172
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG-PRAEVLEFFE 239
+ + + ++ ++ + + L D ++ DG L G P+A
Sbjct: 173 RANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL------ 226
Query: 240 SLGFRLPPRKGVADFL 255
+ P A+FL
Sbjct: 227 ---YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.004
Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 42/220 (19%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARI 736
LL +VS G LT ++G++G+GK+TL+ L + +I G + + A
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS-------QFEIS-EGRVWAERSIA-- 724
Query: 737 SGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
YV Q Q I +A +R ++ + + + + +L++ L G
Sbjct: 725 --YVPQ------QAWI-----MNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGG- 770
Query: 797 PGSFGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVR 845
GL TE Q+ R+++A + AN + +D+P S LDA V+
Sbjct: 771 ----GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF 826
Query: 846 NTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
G+T V HQ + + D ++ + GRV + G
Sbjct: 827 LGALAGKTRVLATHQ--VHVVPRADYVVALGD-GRVEFSG 863
|
Length = 1560 |
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.004
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 15/89 (16%)
Query: 665 MRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKIS 724
+RS GI +K Q++ FSP LT LVG +GAGKTT+++ L TG + G
Sbjct: 11 VRSFGIEDKDKQIID----FFSP--LTILVGPNGAGKTTIIECLKYICTGDFPPG----- 59
Query: 725 GYPKEQSTFARISGYVEQEDVHSPQVTIE 753
+ +TF ++ DV + Q+ ++
Sbjct: 60 ---TKGNTFVHDPKVAQETDVRA-QIRLQ 84
|
All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1250 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.98 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.98 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.98 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.98 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.98 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.98 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.98 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.98 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.98 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.98 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.98 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.98 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.98 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.98 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.98 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.98 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.98 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.98 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.98 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.98 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.98 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.97 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.97 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.97 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.97 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.97 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.97 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.97 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.97 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.97 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.97 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.97 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.97 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.97 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.97 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.97 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.97 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.97 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.97 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.97 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.97 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.97 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.97 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.97 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.97 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.97 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.97 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.97 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.97 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.97 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.97 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.97 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.97 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.97 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.97 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.97 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.97 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-194 Score=1761.48 Aligned_cols=1212 Identities=50% Similarity=0.874 Sum_probs=1098.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccccceEEeeccccccCCCCCHHHHHHHHHHccCCCcc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGANDS 80 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~~ 80 (1250)
|+.++||+||||||||++|+|..+......|+|++||++.++...++.++|++|+|.|++.+||||+|.|+++|++...+
T Consensus 143 m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r 222 (1391)
T KOG0065|consen 143 MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSR 222 (1391)
T ss_pred eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccc
Confidence 58899999999999999999999876566889999999998877788999999999999999999999999999987554
Q ss_pred hhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHHH
Q 000860 81 FAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI 160 (1250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~al 160 (1250)
.. +..+.++.. ..+|.+++.+||++|+||.||++.+||+||||||||++|.++
T Consensus 223 ~~----~~~R~e~~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~ 275 (1391)
T KOG0065|consen 223 YD----EVSRREKLA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEML 275 (1391)
T ss_pred cc----cccHHHHHH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeee
Confidence 31 222322211 147899999999999999999999999999999999999999
Q ss_pred hcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHHHHHh
Q 000860 161 VGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240 (1250)
Q Consensus 161 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~~f~~ 240 (1250)
+.+++++++||+|+|||+.++.++++.|+++++..+.|.+++++|++++++++||+|++|.+|+++|+||.+++++||++
T Consensus 276 v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~ 355 (1391)
T KOG0065|consen 276 VGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFED 355 (1391)
T ss_pred ecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHh
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchhHHHhhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhhhhHhhccCCCCCCCCCCCcccccCcc
Q 000860 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAVPFDKSKSHPSALATTKYA 320 (1250)
Q Consensus 241 lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1250)
+||.||++++++|+++++++.+++.++|.....+....+++++.+.+.+++.+.++..+.+.+.++.+.++.+...+++.
T Consensus 356 ~Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~ 435 (1391)
T KOG0065|consen 356 MGFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYS 435 (1391)
T ss_pred cCccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCcee
Confidence 99999999999999999999888888888877777778889999999999999999999999988888888888889999
Q ss_pred ccHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccchhHHHHHHHHHHHHHHHHhhhHHH
Q 000860 321 VSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPI 400 (1250)
Q Consensus 321 ~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 400 (1250)
.+.|.|++.|+.|.+.+..||..++....++.+++++++|++|++... .+..+...+.+++||++++.+++++.+++.
T Consensus 436 v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~ 513 (1391)
T KOG0065|consen 436 VPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIAL 513 (1391)
T ss_pred ccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999998773 445677888999999999999999999999
Q ss_pred hhhcchhHHHhhhCCCCChhHHHHHHHHHHHhHHHHHHHHHHhhhhcccccccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000860 401 LISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480 (1250)
Q Consensus 401 ~~~~~~v~~~e~~~~~y~~~~~~la~~l~~lp~~~~~~~i~~~ivy~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~~~i~ 480 (1250)
.+.++|+++|||+..+|++|++.++.++.++|..++..++|.+|.||++|+.+++++||++++++++...++.+++++++
T Consensus 514 ~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia 593 (1391)
T KOG0065|consen 514 TFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIA 593 (1391)
T ss_pred HHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhCHHHHHHHHHHHhhcCCcccccc------------CC
Q 000860 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATRWMKK------------SA 548 (1250)
Q Consensus 481 ~~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~yisp~~y~~~a~~~~ef~~~~~~~~------------~~ 548 (1250)
++++++.+|+.++++..+.+.+++||+||...|++||+|++|++|+.|++++++.|||.+.+|.|. ..
T Consensus 594 ~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~ 673 (1391)
T KOG0065|consen 594 SLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENK 673 (1391)
T ss_pred HhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999986 11
Q ss_pred C---ccccccchhccccccC-----CCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCccccccccccchhhhcccc
Q 000860 549 I---GNNTVGYNVLHSHSLP-----TDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKGV 620 (1250)
Q Consensus 549 ~---~~~~~g~~~l~~~~~~-----~~~~~~w~~~~ill~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (1250)
. ...+.|..++...++. ....|+|++++++++|.++|..+..+++.+.++....+......+...+.....
T Consensus 674 ~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~- 752 (1391)
T KOG0065|consen 674 VCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKS- 752 (1391)
T ss_pred cchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchh-
Confidence 1 1345678888777665 677899999999999999999999999999998877665543322221110000
Q ss_pred ccccccccccCCcccCCCCCcccCCCCeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCc
Q 000860 621 ASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAG 700 (1250)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsG 700 (1250)
.......+...+....+.+++..|..+..++++||.+..+.+-..+.+| +++++|+|||+.++||.++||||+||||
T Consensus 753 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAG 829 (1391)
T KOG0065|consen 753 AGSSSEIEKLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAG 829 (1391)
T ss_pred ccccccccccccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCc
Confidence 0000000000011111233455555566777788777776665444443 5678999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 000860 701 KTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEV 780 (1250)
Q Consensus 701 KSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~ 780 (1250)
||||||+|+||.+.|.++|+|.+||.|.++..++|.+|||.|+|.|.|.+||||.|.|+|.||+|.+++.+++.+.|+++
T Consensus 830 KTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~V 909 (1391)
T KOG0065|consen 830 KTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEV 909 (1391)
T ss_pred hHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEec
Q 000860 781 MSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 859 (1250)
Q Consensus 781 l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p-~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H 859 (1250)
++.++|++++|.+||.++ .|||.+||||++||.+|+.|| .||||||||||||+.++..|++.+|+++++|+||+||+|
T Consensus 910 i~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIH 988 (1391)
T KOG0065|consen 910 IELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIH 988 (1391)
T ss_pred HHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 999999999999999999 899999999999999999999 899999999999999999999999999999999999999
Q ss_pred CCCHHHHHhhcceeeeecCcEEEEeCCCCccchhHHHHhhhCCCCCCCCCCCCccchhhhhcCchhhhhhhhhHHHHHhc
Q 000860 860 QPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKN 939 (1250)
Q Consensus 860 ~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~yf~~~~~~~~~p~~~npad~~~~~~~~~~~~~~~~~~~~~~~~ 939 (1250)
|||.++++.||++++|++||+++|.||.+.+++.+++||+++||. +||+..|||||++|+++...+.+.+.||++.|++
T Consensus 989 QPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~-~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~ 1067 (1391)
T KOG0065|consen 989 QPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGV-KCISDENPAEWMLEVIGAGAEASLSVDFAEIWKN 1067 (1391)
T ss_pred CCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCc-cCCCCCChHHHHHhhcccccccccCccHHHHHhc
Confidence 999999999999999999999999999999999999999999875 7999999999999999988777778899999999
Q ss_pred cHHHHHHHHHhhhcCCCCCC-CCCCccCcccCCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCC
Q 000860 940 SEQYREVESSIKSLSVPPDD-SEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGS 1018 (1250)
Q Consensus 940 s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~ 1018 (1250)
|++++++++++++++.+.++ ..+...+++|+.|+|.|++.++||++..+||+|.++++|++..++.||++|+.||++++
T Consensus 1068 S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~ 1147 (1391)
T KOG0065|consen 1068 SEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH 1147 (1391)
T ss_pred cHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC
Confidence 99999999999999887777 56666777899999999999999999999999999999999999999999999999984
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 000860 1019 QRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLVEIPYVFVQTLLFGVITYF 1098 (1250)
Q Consensus 1019 ~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~ 1098 (1250)
+.+++++.+|++|+++++.+.++.....+.+..||.+++||+.+|+||+.||++|++++|+|+.++++++|.+++|+
T Consensus 1148 ---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~ 1224 (1391)
T KOG0065|consen 1148 ---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYY 1224 (1391)
T ss_pred ---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeee
Confidence 68999999999999999888877666777788899999999999999999999999999999999999999999999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcccccCCCCcchhhHHhHhhCHHH
Q 000860 1099 MVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVA 1178 (1250)
Q Consensus 1099 ~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~ 1178 (1250)
|+|+.+++.+|++|++.++++.++.+.+|+++.+++||.++|+.+.++++.++.+|||+++|++.||.||+|+||+||+.
T Consensus 1225 ~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~t 1304 (1391)
T KOG0065|consen 1225 PIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVT 1304 (1391)
T ss_pred eccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCccccccCC-------CCCCHHHHHHhhcC----CCCCchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000860 1179 WTLRGIISSQLGDVETMIVEPT-------FRGTVKEYLKESLG----YGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNF 1247 (1250)
Q Consensus 1179 y~~~~l~~ne~~~~~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 1247 (1250)
|.+++++..+++|.+..|...+ ...++++|+...+| +.++..-....+..++.+++.+++.+.++|.++
T Consensus 1305 y~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~ 1384 (1391)
T KOG0065|consen 1305 YTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNF 1384 (1391)
T ss_pred HHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHH
Confidence 9999999999999987774322 12479999999999 776666666667778899999999999999999
Q ss_pred ccC
Q 000860 1248 QRR 1250 (1250)
Q Consensus 1248 ~~~ 1250 (1250)
+||
T Consensus 1385 wrn 1387 (1391)
T KOG0065|consen 1385 WRN 1387 (1391)
T ss_pred HHh
Confidence 986
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-190 Score=1860.48 Aligned_cols=1249 Identities=59% Similarity=1.027 Sum_probs=1080.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccccceEEeeccccccCCCCCHHHHHHHHHHccCCCcc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGANDS 80 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~~ 80 (1250)
+++|+||||||||||||+|+|+++|+...+|+|.+||+++++...++.++||+|+|.+++++||+|||.|++++++....
T Consensus 193 ~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~ 272 (1470)
T PLN03140 193 MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTR 272 (1470)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCc
Confidence 58999999999999999999999875557999999999987655577899999999999999999999999988754321
Q ss_pred hhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHHH
Q 000860 81 FAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI 160 (1250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~al 160 (1250)
. +...+..+.+++....+.+++|.++++....+.+.+..++.+|+.+||++++||.||++..++|||||||||+||++|
T Consensus 273 ~-~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL 351 (1470)
T PLN03140 273 Y-DLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMI 351 (1470)
T ss_pred c-cchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhh
Confidence 1 111122233333333444556666666555555555668899999999999999999999999999999999999999
Q ss_pred hcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHHHHHh
Q 000860 161 VGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240 (1250)
Q Consensus 161 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~~f~~ 240 (1250)
+++|+++||||||+|||+.++.++++.|+++++..|+|+|+++|||+++++++||+|++|++|+++|+|+.+++.+||++
T Consensus 352 ~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~ 431 (1470)
T PLN03140 352 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFES 431 (1470)
T ss_pred cCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHH
Confidence 99999999999999999999999999999998767899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchhHHHhhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhhhhHhhccCCCCCCCCCCCcccccCcc
Q 000860 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAVPFDKSKSHPSALATTKYA 320 (1250)
Q Consensus 241 lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1250)
+||.||++.+++||++++.++.+++++|.....|....+++++++.|+++..+++...+++.+.++...++.....+++.
T Consensus 432 lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 511 (1470)
T PLN03140 432 CGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYS 511 (1470)
T ss_pred cCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCc
Confidence 99999999999999999998776656554443444445788999999998887776665555444333333333345678
Q ss_pred ccHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccchhHHHHHHHHHHHHHHHHhhhHHH
Q 000860 321 VSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFSELPI 400 (1250)
Q Consensus 321 ~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 400 (1250)
.+++.|++.+++|.++..+||+..+..+.++.+++|+++|++|++++.+.....+...+.|.+||.++..+++++.+++.
T Consensus 512 ~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~ 591 (1470)
T PLN03140 512 VPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELAL 591 (1470)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999886554434456677889999988888999999999
Q ss_pred hhhcchhHHHhhhCCCCChhHHHHHHHHHHHhHHHHHHHHHHhhhhcccccccChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000860 401 LISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMMA 480 (1250)
Q Consensus 401 ~~~~~~v~~~e~~~~~y~~~~~~la~~l~~lp~~~~~~~i~~~ivy~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~~~i~ 480 (1250)
++.++++|+|||..++|++|+|+++++++++|+.++.+++|++|+|||+|+.+++.+||.+++++++...++.+++++++
T Consensus 592 ~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~ 671 (1470)
T PLN03140 592 MIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIA 671 (1470)
T ss_pred HHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhCHHHHHHHHHHHhhcCCcccccc-CCCccccccchhc
Q 000860 481 SIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATRWMKK-SAIGNNTVGYNVL 559 (1250)
Q Consensus 481 ~~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~yisp~~y~~~a~~~~ef~~~~~~~~-~~~~~~~~g~~~l 559 (1250)
++++++.+|+.+++++.+++++++||+++...||+||+|++|+||+.|++++++.|||.+..|... +.......|..+|
T Consensus 672 a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L 751 (1470)
T PLN03140 672 SVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVL 751 (1470)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987766432 1222456899999
Q ss_pred cccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCccccccccccchhhhc--c-----cccc-cc---cc--
Q 000860 560 HSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVK--K-----GVAS-QG---CE-- 626 (1250)
Q Consensus 560 ~~~~~~~~~~~~w~~~~ill~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~-~~---~~-- 626 (1250)
..+++...+.|+|.++++++++.++|.++.++++.+.++................... . .... .. ..
T Consensus 752 ~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1470)
T PLN03140 752 NIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQ 831 (1470)
T ss_pred HhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhcccccccccccccccccccccccc
Confidence 9999988888999999999999999999999999988754443322211110000000 0 0000 00 00
Q ss_pred --c-c------ccCC----cccCCCCCcccCCCCeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEE
Q 000860 627 --L-K------TTSS----REDGKKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTAL 693 (1250)
Q Consensus 627 --~-~------~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i 693 (1250)
. . ...+ .......++..|..+..++|+||+|.++.+...+..+...+++++|+|||++++|||++||
T Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL 911 (1470)
T PLN03140 832 RMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTAL 911 (1470)
T ss_pred ccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEE
Confidence 0 0 0000 0001122334466677899999999997665433333333456899999999999999999
Q ss_pred EcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHH
Q 000860 694 VGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQR 773 (1250)
Q Consensus 694 ~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~ 773 (1250)
|||||||||||||+|+|+.+++..+|+|.+||.+.....+++.+|||+|+|.++|.+||+|++.|++.++.|...+++++
T Consensus 912 ~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~ 991 (1470)
T PLN03140 912 MGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEK 991 (1470)
T ss_pred ECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHH
Confidence 99999999999999999977667889999999987655567789999999999999999999999998887766666777
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCE
Q 000860 774 HEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRT 853 (1250)
Q Consensus 774 ~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~t 853 (1250)
.++++++++.++|.+++|+.+|.++.++|||||||||+||++|+.+|+||||||||||||+.++..+++.|++++++|+|
T Consensus 992 ~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~t 1071 (1470)
T PLN03140 992 MMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1071 (1470)
T ss_pred HHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCE
Confidence 78899999999999999999998887899999999999999999999999999999999999999999999999988999
Q ss_pred EEEEecCCCHHHHHhhcceeeeecCcEEEEeCCCCccchhHHHHhhhCCCCCCCCCCCCccchhhhhcCchhhhhhhhhH
Q 000860 854 VVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDF 933 (1250)
Q Consensus 854 vi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~yf~~~~~~~~~p~~~npad~~~~~~~~~~~~~~~~~~ 933 (1250)
||+++|||+.++++.||++++|++||+++|.|+.+.+++++++||+++||.++||+++|||||++|+++.+.+.+...||
T Consensus 1072 VI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~ 1151 (1470)
T PLN03140 1072 VVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDF 1151 (1470)
T ss_pred EEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchH
Confidence 99999999977899999999998889999999998877899999999977667999999999999999876554555689
Q ss_pred HHHHhccHHHHHHHHHhhhcCCCCCCCCCCccCcccCCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHh
Q 000860 934 ANVYKNSEQYREVESSIKSLSVPPDDSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVF 1013 (1250)
Q Consensus 934 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f 1013 (1250)
++.|++|++++++.+.++++..+.+..++....++++.++|+|+++|++|+++++||||.++.+|+++++++|+++|++|
T Consensus 1152 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f 1231 (1470)
T PLN03140 1152 AEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIF 1231 (1470)
T ss_pred HHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999998887777666554444333334567889999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 000860 1014 WDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLVEIPYVFVQTLLFG 1093 (1250)
Q Consensus 1014 ~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~ 1093 (1250)
|+++++..+.++++++.|++|++++++++.++++++|.+..||++|+||+++|+|++++|++|++++|+|+.++.+++|.
T Consensus 1232 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~ 1311 (1470)
T PLN03140 1232 WKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYT 1311 (1470)
T ss_pred hCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998766778999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcccccCCCCcchhhHHhHh
Q 000860 1094 VITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYY 1173 (1250)
Q Consensus 1094 ~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~ 1173 (1250)
+|+|||+||+++++.||+|+++++++.++++++|+++++++||.++|..++++++.++++|+||++|+++||+||+|++|
T Consensus 1312 ~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~ 1391 (1470)
T PLN03140 1312 LIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYW 1391 (1470)
T ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCHHHHHHHHHHHHhhCCCccccccCCC--CCCHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000860 1174 ISPVAWTLRGIISSQLGDVETMIVEPTF--RGTVKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQRR 1250 (1250)
Q Consensus 1174 isp~~y~~~~l~~ne~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 1250 (1250)
+||++|+++|++.|||+|.+..|.+||. ..++.+|+++.|||++++.|++++++++|+++|+++++++++++|||||
T Consensus 1392 isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1392 ICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred cCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999998877766662 2468899999999999999999999999999999999999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-169 Score=1675.31 Aligned_cols=1198 Identities=32% Similarity=0.543 Sum_probs=986.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC-CceeeEEEECCeecCcc--cccceEEeeccccccCCCCCHHHHHHHHHHccCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGN-LNKSGSITYNGWELDEF--QVQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~-~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~ 77 (1250)
+++|+||||||||||||+|+|+.++. .+.+|+|.+||.++++. ..++.++||+|+|.+++++||+|||.|+++++..
T Consensus 89 ~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 168 (1394)
T TIGR00956 89 LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTP 168 (1394)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCC
Confidence 58999999999999999999997432 24699999999987532 2456799999999999999999999999876532
Q ss_pred CcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHH
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA 157 (1250)
.... ....+.+.. +..++.+++.+||++++||.||++.+++|||||||||+||
T Consensus 169 ~~~~----~~~~~~~~~-----------------------~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA 221 (1394)
T TIGR00956 169 QNRP----DGVSREEYA-----------------------KHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIA 221 (1394)
T ss_pred CCCC----CCCCHHHHH-----------------------HHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHH
Confidence 1100 000000000 0124668999999999999999999999999999999999
Q ss_pred HHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHHH
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEF 237 (1250)
Q Consensus 158 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~~ 237 (1250)
++|+++|+|++|||||+|||+.++.++++.|++++++.|+|+|+++||+++++.++||+|++|++|+++++|+++++.+|
T Consensus 222 ~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~y 301 (1394)
T TIGR00956 222 EASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQY 301 (1394)
T ss_pred HHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHH
Confidence 99999999999999999999999999999999998766899999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCchhHHHhhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhhhhHhhccCCCCCC----------
Q 000860 238 FESLGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAVPFDKS---------- 307 (1250)
Q Consensus 238 f~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---------- 307 (1250)
|+++||.||++.+++||+.++.++.++.. ..... .....+.+++++.|+++..+++...+.+.+.++.
T Consensus 302 F~~lG~~~p~~~n~aDfl~~~~~~~~~~~-~~~~e-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1394)
T TIGR00956 302 FEKMGFKCPDRQTTADFLTSLTSPAERQI-KPGYE-KKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYR 379 (1394)
T ss_pred HHHcCCCCCCCCChHHHHHhccChhhhhc-ccccc-ccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHH
Confidence 99999999999999999999987654221 11101 1122457788888988877665544332211110
Q ss_pred -----CCCCCcccccCccccHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccchhHHHH
Q 000860 308 -----KSHPSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNC 382 (1250)
Q Consensus 308 -----~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~ 382 (1250)
...+.....+.+..++++|++.+++|.++..+||+..+..++++.+++|+++|++|++.+.+. .+.+.+.|+
T Consensus 380 ~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~---~~~~~r~g~ 456 (1394)
T TIGR00956 380 ESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT---SDFYSRGGA 456 (1394)
T ss_pred HHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---hhHHHHHHH
Confidence 000011122356788999999999999999999999999999999999999999999876433 456778999
Q ss_pred HHHHHHHHHHHHhhhHHHhhhcchhHHHhhhCCCCChhHHHHHHHHHHHhHHHHHHHHHHhhhhcccccccChhHHHHHH
Q 000860 383 HFFGMVHMMFNCFSELPILISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYM 462 (1250)
Q Consensus 383 ~f~~~~~~~~~~~~~~~~~~~~~~v~~~e~~~~~y~~~~~~la~~l~~lp~~~~~~~i~~~ivy~~~gl~~~~~~f~~~~ 462 (1250)
+|+.+.+..+.++.+++.++.+|++++||+..++|++++|++|++++++|+.++.+++|++|+|||+|+.+++.+|+.++
T Consensus 457 lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~ 536 (1394)
T TIGR00956 457 LFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYL 536 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHH
Confidence 99999998888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhCHHHHHHHHHHHhhcCCcc
Q 000860 463 LLLFSIHQMALGLYRMMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATR 542 (1250)
Q Consensus 463 ~~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~yisp~~y~~~a~~~~ef~~~~ 542 (1250)
+++++...++.++++++++++++..+|+.+++++.+++++++||+++...+|.||+|++|+||++|++++++.|||.+..
T Consensus 537 l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~ 616 (1394)
T TIGR00956 537 LILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRR 616 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccccC--CC----------------------ccccccchhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000860 543 WMKKS--AI----------------------GNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNP 598 (1250)
Q Consensus 543 ~~~~~--~~----------------------~~~~~g~~~l~~~~~~~~~~~~w~~~~ill~~~~~f~~~~~~~l~~~~~ 598 (1250)
+.|.. +. .....|.++|.. .+.....+.|.++++++++.++|..+..+++.+.++
T Consensus 617 ~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 617 FECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77641 00 012356677764 344455689999999999999999999999998774
Q ss_pred CcCccccccccc----cchh--------hhccccccccccccccCCcccCCCCC-cccCCCCeeEEEEeEEEEEeCCccc
Q 000860 599 LRKSQVVIQSDD----REEN--------SVKKGVASQGCELKTTSSREDGKKKG-MIMPFHPLTMTFHNISYYVDTPQAM 665 (1250)
Q Consensus 599 ~~~~~~~~~~~~----~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~ 665 (1250)
............ ...+ ....+........+...+.+...... .........++|+|++++++.+
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~~~~~--- 772 (1394)
T TIGR00956 696 AKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIK--- 772 (1394)
T ss_pred cCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEEEecCC---
Confidence 333211100000 0000 00000000000000000000000000 0000112358999999987532
Q ss_pred ccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEEECCccCCcccccceEEEEcCCC
Q 000860 666 RSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKEQSTFARISGYVEQED 744 (1250)
Q Consensus 666 ~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~yv~q~~ 744 (1250)
++++.+|+|||++++|||++||+||||||||||||+|+|+.+++ +.+|+|.+||.+... .+++.+|||+|+|
T Consensus 773 ------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~ 845 (1394)
T TIGR00956 773 ------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQD 845 (1394)
T ss_pred ------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccc
Confidence 13467999999999999999999999999999999999987643 456999999998753 4678899999999
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCc-EE
Q 000860 745 VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPS-II 823 (1250)
Q Consensus 745 ~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~-il 823 (1250)
.+++.+||+|++.|++.++.|...++++++++++++++.++|.+++|+.+|+++. +||||||||++||++|+.+|+ ||
T Consensus 846 ~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~~~P~~iL 924 (1394)
T TIGR00956 846 LHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELVAKPKLLL 924 (1394)
T ss_pred cCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHHcCCCeEE
Confidence 9999999999999999988776667777788999999999999999999986543 799999999999999999997 99
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCCCccchhHHHHhhhCCC
Q 000860 824 FMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQGLDG 903 (1250)
Q Consensus 824 ~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~yf~~~~~ 903 (1250)
+|||||||||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++||+++|.|+.+..++++++||+++|
T Consensus 925 lLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G- 1003 (1394)
T TIGR00956 925 FLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHG- 1003 (1394)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcC-
Confidence 9999999999999999999999998889999999999997778899999999987799999999887789999999985
Q ss_pred CCCCCCCCCccchhhhhcCchhhhhhhhhHHHHHhccHHHHHHHHHhhhcCCCCCCC---CCCccCcccCCCHHHHHHHH
Q 000860 904 IPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREVESSIKSLSVPPDDS---EPLKFASTYSQNWLSQFFIC 980 (1250)
Q Consensus 904 ~~~~p~~~npad~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~~l 980 (1250)
.++||+++|||||++|+++...+.+...++.+.|++|.++++..+.+++...+.... .......+++.++|+|+++|
T Consensus 1004 ~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l 1083 (1394)
T TIGR00956 1004 APKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLV 1083 (1394)
T ss_pred CCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHH
Confidence 358999999999999999865443334689999999988877665554432221111 11112246889999999999
Q ss_pred HHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHH-
Q 000860 981 LWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVF- 1059 (1250)
Q Consensus 981 ~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~- 1059 (1250)
++|+++++||||.++.+|+++++++|+++|++||++++ +++++++|+|++|+.+++.++. +...+|.|+.||.+|
T Consensus 1084 ~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~ 1159 (1394)
T TIGR00956 1084 LWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYE 1159 (1394)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999986 4789999999999988877766 345567788888886
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Q 000860 1060 YREKAAGMYSPIPFAAAQGLVEIPYVFVQTLLFGVITYFMVNFERTMRK-------FLLYLVFTFLTFSYFTFFGMMVVG 1132 (1250)
Q Consensus 1060 ~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~~-------f~~~~~~~~~~~~~~~~~~~~~~~ 1132 (1250)
+||+.+|+|++.+|++|++++|+|+.++.+++|.+|+|||+||++++.. |++|++++++..++++++|+++++
T Consensus 1160 ~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~ 1239 (1394)
T TIGR00956 1160 VRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVIS 1239 (1394)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999987765 999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHHhcccccCCCCcchhhHHhHhhCHHHHHHHHHHHHhhCCCcccccc--------------
Q 000860 1133 LTPNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVE-------------- 1198 (1250)
Q Consensus 1133 ~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~ne~~~~~~~~~~-------------- 1198 (1250)
++|+..+|+.++++++.++++|+||++++++||.||+|++|+||++|+++|++.|||++.+..|..
T Consensus 1240 ~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC 1319 (1394)
T TIGR00956 1240 FNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTC 1319 (1394)
T ss_pred HCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999998765521
Q ss_pred -----------------CCCC--------CCHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000860 1199 -----------------PTFR--------GTVKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQR 1249 (1250)
Q Consensus 1199 -----------------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 1249 (1250)
|+.. .++.+| ++.+|++.++.|+|++++++|++++ +++++++.+..+.+
T Consensus 1320 ~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~-l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~~r~~ 1393 (1394)
T TIGR00956 1320 GEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDF-LEPISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWLARVP 1393 (1394)
T ss_pred HHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHH-HHHcCCcccccccchhhhhHHHHHH-HHHHHhhheEEEcC
Confidence 1100 134444 4578999999999999999999888 88888888865544
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-99 Score=928.21 Aligned_cols=581 Identities=32% Similarity=0.581 Sum_probs=506.7
Q ss_pred CeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEEECC
Q 000860 647 PLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG-YIEGDIKISG 725 (1250)
Q Consensus 647 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g 725 (1250)
+..+.|+|+++..+.+.. ..+++|+|||++++|||++||||||||||||||++|+|+..++ ..+|+|.+||
T Consensus 23 ~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG 94 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG 94 (613)
T ss_pred cceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC
Confidence 457899999987754321 3578999999999999999999999999999999999998764 6899999999
Q ss_pred ccCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000860 726 YPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 726 ~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgG 805 (1250)
++...+.+++.+|||+|||.++|++||+|++.|+|++|+|.+.++++++++|+++++++||.+++|+++|+.+.||+|||
T Consensus 95 ~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGG 174 (613)
T KOG0061|consen 95 RPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGG 174 (613)
T ss_pred ccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccc
Confidence 88877889999999999999999999999999999999999889999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
|||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+|+|||+.+++++||++++|++ |+++|.|
T Consensus 175 ErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G 253 (613)
T KOG0061|consen 175 ERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYSG 253 (613)
T ss_pred hhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 7999999
Q ss_pred CCCccchhHHHHhhhCCCCCCCCCCCCccchhhhhcCch-hhhhh--h---hhHHHHHhccHHHHHHHHHhhhcCCCCCC
Q 000860 886 KLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVLEVTTTA-VEEKL--G---VDFANVYKNSEQYREVESSIKSLSVPPDD 959 (1250)
Q Consensus 886 ~~~~~~~~~~~yf~~~~~~~~~p~~~npad~~~~~~~~~-~~~~~--~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 959 (1250)
++ +++.+||+++| ++||++.|||||++|+++.+ ..++. . ......++..+...+... ........
T Consensus 254 ~~----~~~~~ff~~~G--~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 324 (613)
T KOG0061|consen 254 SP----RELLEFFSSLG--FPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLE---ALEKSLST 324 (613)
T ss_pred CH----HHHHHHHHhCC--CCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHH---HHhhhccc
Confidence 98 78999999997 57999999999999999842 11100 0 001111110110111100 00000000
Q ss_pred CCCCccCcccCCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHH
Q 000860 960 SEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQRDSSQSLFMVMGALYASCLF 1039 (1250)
Q Consensus 960 ~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~ 1039 (1250)
..+ .+.....+||.|++.|++|.+++.+|||.+...|+++.+++|+++|++||++++ +..+++++.|++|+.+.+
T Consensus 325 ~~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~~~~ 399 (613)
T KOG0061|consen 325 SKK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFILSF 399 (613)
T ss_pred ccc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHHHHH
Confidence 000 111127899999999999999999999999999999999999999999999975 456777999999999999
Q ss_pred HHHHHHhhhhhHHHhhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHH
Q 000860 1040 LGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLVEIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLT 1119 (1250)
Q Consensus 1040 ~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~~~ 1119 (1250)
..+.++.+.++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|++|+|||+|++++..+|++|++++++.
T Consensus 400 ~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~ 479 (613)
T KOG0061|consen 400 MTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLS 479 (613)
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 98888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcccccCCCCcchhhHHhHhhCHHHHHHHHHHHHhhCCCccccccC
Q 000860 1120 FSYFTFFGMMVVGLTPNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVEP 1199 (1250)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~ne~~~~~~~~~~~ 1199 (1250)
.++++++|+++++..||...|..+++++++.+++|+||+++.++||+||+|++|+|+++|++|+++.|||.+....|...
T Consensus 480 ~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~ 559 (613)
T KOG0061|consen 480 SLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLS 559 (613)
T ss_pred HHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999722333211
Q ss_pred --CCCCCHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000860 1200 --TFRGTVKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQRR 1250 (1250)
Q Consensus 1200 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 1250 (1250)
......++.++...++++.+.|.|+.+++++.++|++++|++|++..+.+|
T Consensus 560 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 560 GNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 122233455667889999999999999999999999999999999776654
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-97 Score=916.29 Aligned_cols=584 Identities=25% Similarity=0.424 Sum_probs=485.8
Q ss_pred CCeeEEEEeEEEEEeCCccc----------------ccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHh
Q 000860 646 HPLTMTFHNISYYVDTPQAM----------------RSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLA 709 (1250)
Q Consensus 646 ~~~~l~~~~l~~~~~~~~~~----------------~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~ 709 (1250)
.++.++|.|++|+....... ++.....+++++|+|+|+++++||++||+||||||||||||+|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 35689999999987543200 00011123567999999999999999999999999999999999
Q ss_pred CCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc
Q 000860 710 GRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL 789 (1250)
Q Consensus 710 g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~ 789 (1250)
|+.+++..+|+|.+||.+... ..++.+|||+|++.+++.+||+||+.|++.++.+...++++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 987654468999999998653 3446689999999999999999999999888766555666777889999999999999
Q ss_pred ccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhh
Q 000860 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAF 869 (1250)
Q Consensus 790 ~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 869 (1250)
+|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999988788999999999999999999999999999999999999999999999998889999999999987789999
Q ss_pred cceeeeecCcEEEEeCCCCccchhHHHHhhhCCCCCCCCCCCCccchhhhhcCchhhh------h---hhhhHHHHHhcc
Q 000860 870 DELLLMKRGGRVIYGGKLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVLEVTTTAVEE------K---LGVDFANVYKNS 940 (1250)
Q Consensus 870 d~v~~l~~gg~~~~~g~~~~~~~~~~~yf~~~~~~~~~p~~~npad~~~~~~~~~~~~------~---~~~~~~~~~~~s 940 (1250)
|++++|++ |+++|.|+. +++.+||+++| ++||+++|||||++|+++.+.+. . ......+.|++.
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~G--~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESVG--FSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHCC--CCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 99999985 799999997 78999999997 57999999999999998753210 0 012233445421
Q ss_pred HHHHHHHHHhhh--cCC-CCC-----CCCCCc-cCcccCCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHH
Q 000860 941 EQYREVESSIKS--LSV-PPD-----DSEPLK-FASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGS 1011 (1250)
Q Consensus 941 ~~~~~~~~~~~~--~~~-~~~-----~~~~~~-~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~ 1011 (1250)
. .++..+..+. ... ... ..+... ....+.++||+|+.+|++|++++ |||+.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111111 000 000 000000 11224578999999999999988 89999999999999999999999
Q ss_pred HhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 000860 1012 VFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLVEIPYVFVQTLL 1091 (1250)
Q Consensus 1012 ~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~ 1091 (1250)
+||+++ ..++++|.|++||++++.++.++++.++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999984 467999999999999998888888888999999999999999999999999999999999999999999
Q ss_pred HHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcccccCCCCcchhhHHh
Q 000860 1092 FGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWF 1171 (1250)
Q Consensus 1092 ~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~ 1171 (1250)
|++|+|||+||++++++||+|++++++..++++++|+++++++||..+|+.+++++++++++|+||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred HhhCHHHHHHHHHHHHhhCCCcc-----ccccCC-CCCCHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 000860 1172 YYISPVAWTLRGIISSQLGDVET-----MIVEPT-FRGTVKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFL 1245 (1250)
Q Consensus 1172 ~~isp~~y~~~~l~~ne~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 1245 (1250)
+|+||++|++|+++.|||++.+. .|..+. .......+ ....++++.+.|.++++|++++++|++++|++|++.
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~ 657 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKF-VEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRI 657 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCcc-chhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999987542 342211 01111112 223344456789999999999999999999999987
Q ss_pred cc
Q 000860 1246 NF 1247 (1250)
Q Consensus 1246 ~~ 1247 (1250)
+|
T Consensus 658 ~~ 659 (659)
T PLN03211 658 KH 659 (659)
T ss_pred cC
Confidence 75
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-97 Score=917.69 Aligned_cols=568 Identities=30% Similarity=0.505 Sum_probs=501.5
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEEECCccCCcccccceEEEEcCCCCCCCCCC
Q 000860 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVT 751 (1250)
Q Consensus 673 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~lt 751 (1250)
+++++|+|+|++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.+...+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999987543 358999999998766667888999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC-CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000860 752 IEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPG-SFGLSTEQRKRLTIAVELVANPSIIFMDEPTS 830 (1250)
Q Consensus 752 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~-~~~lSgGerqr~~ia~~l~~~p~il~lDEPTs 830 (1250)
|+||+.|++.++.|...++++++++++++++.+||.+++|+.+|+++ .++||||||||++||++|+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999999888777777888899999999999999999999864 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCCCccchhHHHHhhhCCCCCCCCCC
Q 000860 831 GLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQGLDGIPLIPSG 910 (1250)
Q Consensus 831 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~yf~~~~~~~~~p~~ 910 (1250)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|.|+. +++.+||+++| ++||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~----~~~~~~f~~~g--~~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSP----DQAVPFFSDLG--HPCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCH----HHHHHHHHHcC--CCCCCC
Confidence 99999999999999999888999999999998889999999999985 899999997 68999999996 579999
Q ss_pred CCccchhhhhcCchhhh-----hhhhhHHHHHhccHHHHHHHHHhhhcCCCCC---CCCCCccCcccCCCHHHHHHHHHH
Q 000860 911 YNPATWVLEVTTTAVEE-----KLGVDFANVYKNSEQYREVESSIKSLSVPPD---DSEPLKFASTYSQNWLSQFFICLW 982 (1250)
Q Consensus 911 ~npad~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~l~~ 982 (1250)
.|||||++|+++.+.+. +...++.+.|++++.+++..+.......+.+ ..........+..+|++|+++|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 99999999998754321 1123566777777666554433322111100 011111223567899999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHH
Q 000860 983 KQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYRE 1062 (1250)
Q Consensus 983 R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE 1062 (1250)
|++++.||||.++..|+++++++|+++|++||+++. +.++++++.|++|++++++++.++....+.++.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999975 46789999999999999999988888888999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Q 000860 1063 KAAGMYSPIPFAAAQGLVEIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLAAI 1142 (1250)
Q Consensus 1063 ~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 1142 (1250)
+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|++++++..++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCcchhhHHhHhhCHHHHHHHHHHHHhhCCCcc-ccccCCC---CCCHHHHHHhhcCCCCC
Q 000860 1143 ISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVET-MIVEPTF---RGTVKEYLKESLGYGPG 1218 (1250)
Q Consensus 1143 ~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~ne~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~ 1218 (1250)
+++++++++++|+||++++++||+||+|++|+||++|++|+++.|||.+.+. .|...+. +...++++++.||++.+
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~ 585 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNA 585 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999998765 3421111 11124777889999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 000860 1219 MVGASAAMLVAFSVFFFGIFAFSVKFLNFQRR 1250 (1250)
Q Consensus 1219 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~ 1250 (1250)
+.|++++++++++++|++++|++|++-.+.+|
T Consensus 586 ~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 586 DLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999999777766
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-94 Score=956.65 Aligned_cols=591 Identities=25% Similarity=0.429 Sum_probs=509.4
Q ss_pred CeeEEEEeEEEEEeCCcc--ccc-----------------ccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHH
Q 000860 647 PLTMTFHNISYYVDTPQA--MRS-----------------KGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDV 707 (1250)
Q Consensus 647 ~~~l~~~~l~~~~~~~~~--~~~-----------------~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~ 707 (1250)
.+.+.|+|++........ .++ .+.+++++++|+|||+.++|||+++|+||||||||||||+
T Consensus 27 ~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~ 106 (1394)
T TIGR00956 27 KLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKT 106 (1394)
T ss_pred eeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence 457899999876522111 000 0122345779999999999999999999999999999999
Q ss_pred HhCCCCC--CeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCC----CCCHHHHHHH-HH
Q 000860 708 LAGRKTG--GYIEGDIKISGYPKEQ--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPK----EISKDQRHEF-VE 778 (1250)
Q Consensus 708 l~g~~~~--~~~~G~i~~~g~~~~~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~----~~~~~~~~~~-v~ 778 (1250)
|+|+..+ .+.+|+|.+||.+... ..+++.++||+|+|.++|.+||+||+.|++.++.|. +.++++..++ ++
T Consensus 107 LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (1394)
T TIGR00956 107 IASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIAD 186 (1394)
T ss_pred HhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Confidence 9998532 2468999999987643 235667999999999999999999999999887653 2334444333 57
Q ss_pred HHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEE
Q 000860 779 EVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCT 857 (1250)
Q Consensus 779 ~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~ 857 (1250)
++++.+||.+++|+.+|+...++|||||||||+||++|+.+|+|++|||||+|||+.++..+++.|++++++ |+|||++
T Consensus 187 ~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~ 266 (1394)
T TIGR00956 187 VYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVA 266 (1394)
T ss_pred HHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 789999999999999999888999999999999999999999999999999999999999999999999874 9999999
Q ss_pred ecCCCHHHHHhhcceeeeecCcEEEEeCCCCccchhHHHHhhhCCCCCCCCCCCCccchhhhhcCchhhh----------
Q 000860 858 IHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVLEVTTTAVEE---------- 927 (1250)
Q Consensus 858 ~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~yf~~~~~~~~~p~~~npad~~~~~~~~~~~~---------- 927 (1250)
+|||+.++++.||++++|++ |+++|+|+. +++.+||+++| ++||+++|||||++|+++++.+.
T Consensus 267 ~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG--~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~ 339 (1394)
T TIGR00956 267 IYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMG--FKCPDRQTTADFLTSLTSPAERQIKPGYEKKVP 339 (1394)
T ss_pred ecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcC--CCCCCCCChHHHHHhccChhhhhccccccccCC
Confidence 99998889999999999985 799999997 78999999997 58999999999999998864311
Q ss_pred hhhhhHHHHHhccHHHHHHHHHhhhcCCC--C-------------CCCCCCccCcccCCCHHHHHHHHHHHHHHHHhcCh
Q 000860 928 KLGVDFANVYKNSEQYREVESSIKSLSVP--P-------------DDSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSP 992 (1250)
Q Consensus 928 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~--~-------------~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~ 992 (1250)
....++++.|++|+.+++..+.+++.... . ..++.....+.+..|+|+|+++|++|++++.||||
T Consensus 340 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~ 419 (1394)
T TIGR00956 340 RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNP 419 (1394)
T ss_pred CCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCH
Confidence 12367999999999887766554432111 0 00111122346788999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHhcCCCCChHH
Q 000860 993 QYNAVRLAFTTVAALILGSVFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIP 1072 (1250)
Q Consensus 993 ~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~ 1072 (1250)
.++.+|+++++++|+++|++||+++. +++++++|.|++||++++.++.++.++. .+..||+||+||+.+++|++++
T Consensus 420 ~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~~~~~~~~~~~i~-~~~~eR~i~~re~~~~~Y~~~a 495 (1394)
T TIGR00956 420 SFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEIA-SMYEARPIVEKHRKYALYHPSA 495 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCcceeeeccccccCHHH
Confidence 99999999999999999999999985 4678999999999999999999877764 4567999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Q 000860 1073 FAAAQGLVEIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLAAIISSAFYSLSN 1152 (1250)
Q Consensus 1073 y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 1152 (1250)
|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++||..+|+.++++++++++
T Consensus 496 y~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~ 575 (1394)
T TIGR00956 496 DAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALS 575 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccCCCCcchhhHHhHhhCHHHHHHHHHHHHhhCCCcccccc------------------------CCCC-CCHHH
Q 000860 1153 LLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVE------------------------PTFR-GTVKE 1207 (1250)
Q Consensus 1153 l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~ne~~~~~~~~~~------------------------~~~~-~~~~~ 1207 (1250)
+|+||++|+++||+||+|++|+||++|+|||++.|||++..++|.. ||.. .++.+
T Consensus 576 lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~ 655 (1394)
T TIGR00956 576 IYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDD 655 (1394)
T ss_pred HHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHH
Confidence 9999999999999999999999999999999999999998776631 1111 25678
Q ss_pred HHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000860 1208 YLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQ 1248 (1250)
Q Consensus 1208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 1248 (1250)
|+...||++++|.|+|++++++|+++|+++++++++|+++.
T Consensus 656 ~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~~ 696 (1394)
T TIGR00956 656 YLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKGA 696 (1394)
T ss_pred HHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888999999999999999999999999999999998743
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-93 Score=943.56 Aligned_cols=567 Identities=24% Similarity=0.397 Sum_probs=488.4
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEEECCccCCcccccceEEEEcCCCCCCCCCC
Q 000860 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVT 751 (1250)
Q Consensus 673 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~lt 751 (1250)
.++++|+|+|+.++|||+++|+||||||||||||+|+|+.++. ..+|+|.+||++..+...++.++||+|+|.|+|.+|
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lT 255 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMT 255 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCc
Confidence 4577999999999999999999999999999999999987542 358999999998755444678999999999999999
Q ss_pred HHHHHHHHHhcCCCC-------CCCHHHH------------------------HHHHHHHHHHcCCcccccccccCCCCC
Q 000860 752 IEESLWFSANLRLPK-------EISKDQR------------------------HEFVEEVMSLVELDSLRHALVGSPGSF 800 (1250)
Q Consensus 752 v~e~l~~~~~l~~~~-------~~~~~~~------------------------~~~v~~~l~~l~l~~~~~~~v~~~~~~ 800 (1250)
|+||+.|++.++.+. +.+.+++ +..++++++.+||++++|+.+|+...+
T Consensus 256 V~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~r 335 (1470)
T PLN03140 256 VKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIR 335 (1470)
T ss_pred HHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcccc
Confidence 999999998876321 1111111 123678999999999999999998889
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
+|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .|+|||+++|||+.+++++||+|++|++ |
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G 414 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-G 414 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-c
Confidence 9999999999999999999999999999999999999999999999976 4899999999998899999999999985 8
Q ss_pred EEEEeCCCCccchhHHHHhhhCCCCCCCCCCCCccchhhhhcCchhhh------------hhhhhHHHHHhccHHHHHHH
Q 000860 880 RVIYGGKLGVHSQIMIDYFQGLDGIPLIPSGYNPATWVLEVTTTAVEE------------KLGVDFANVYKNSEQYREVE 947 (1250)
Q Consensus 880 ~~~~~g~~~~~~~~~~~yf~~~~~~~~~p~~~npad~~~~~~~~~~~~------------~~~~~~~~~~~~s~~~~~~~ 947 (1250)
+++|+||. +++.+||+++| ++||+++|||||++|+++..+.+ ....++++.|++|..+++..
T Consensus 415 ~ivy~G~~----~~~~~yF~~lG--f~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~ 488 (1470)
T PLN03140 415 QIVYQGPR----DHILEFFESCG--FKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLE 488 (1470)
T ss_pred eEEEeCCH----HHHHHHHHHcC--CCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHH
Confidence 99999997 78999999997 58999999999999999864321 12357889999998877665
Q ss_pred HHhhhcCCCCCCCCCCccCcccCCCHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHH
Q 000860 948 SSIKSLSVPPDDSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQRDSSQSLF 1027 (1250)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~ 1027 (1250)
+.++........++.....++|..++|.|++.|++|+++..+||+.++..|+++.+++|+++|++||+++.+..+..+.+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~ 568 (1470)
T PLN03140 489 NELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGA 568 (1470)
T ss_pred HHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHH
Confidence 44332111101111111234688999999999999999999999999999999999999999999999976544445567
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHH
Q 000860 1028 MVMGALYASCLFLGVNNAASVQPIVSIERTVFYREKAAGMYSPIPFAAAQGLVEIPYVFVQTLLFGVITYFMVNFERTMR 1107 (1250)
Q Consensus 1028 ~~~g~lf~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~ 1107 (1250)
.+.|++||++++.++.++.++ +.++.||+||+|||.+++|++++|++|++++++|+.++.+++|++|+|||+||+++++
T Consensus 569 ~~~g~lff~~l~~~~~~~~~l-~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~ 647 (1470)
T PLN03140 569 LYIGALLFSMIINMFNGFAEL-ALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEAS 647 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchh
Confidence 788999999998888776654 6677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhcccccCCCCcchhhHHhHhhCHHHHHHHHHHHH
Q 000860 1108 KFLLYLVFTFLTFSYFTFFGMMVVGLTPNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISS 1187 (1250)
Q Consensus 1108 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~n 1187 (1250)
+||+|++++++..++++++++++++++|+..+|+.+++++++++++|+||++|+++||+||+|++|+||++|++||+++|
T Consensus 648 ~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~N 727 (1470)
T PLN03140 648 RFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVN 727 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCccc-cccCCCCCCHHHHHHhhcCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000860 1188 QLGDVETM-IVEPTFRGTVKEYLKESLGYGPG--MVGASAAMLVAFSVFFFGIFAFSVKFLNF 1247 (1250)
Q Consensus 1188 e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 1247 (1250)
||.+..+. +.+.+.....++.+++.+|++.+ +.|+++++|++|+++|+++++++|+|+++
T Consensus 728 Ef~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 728 EMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred hccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99776543 22222223334445588999765 56999999999999999999999999874
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-88 Score=831.71 Aligned_cols=567 Identities=27% Similarity=0.473 Sum_probs=505.0
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEEECCccCCcccccceEEEEcCCCCCCCCCC
Q 000860 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVT 751 (1250)
Q Consensus 673 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~lt 751 (1250)
.+..+|+|+|+.++|||++.++||+||||||||++|+|..+.. ...|+|.+||++.++..-++.++|++|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3457999999999999999999999999999999999976532 235799999999776444788999999999999999
Q ss_pred HHHHHHHHHhcCCCCCC----CHHHHH-HHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000860 752 IEESLWFSANLRLPKEI----SKDQRH-EFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMD 826 (1250)
Q Consensus 752 v~e~l~~~~~l~~~~~~----~~~~~~-~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lD 826 (1250)
|+|+|.|+++++.|... ++.++. +..+.+++.+||++|+||+||+...||+||||||||++|.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 99999999999987432 222222 2678899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCCCccchhHHHHhhhCCCCC
Q 000860 827 EPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQGLDGIP 905 (1250)
Q Consensus 827 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~yf~~~~~~~ 905 (1250)
|+|.|||+.|+.++++.||++++. +.|+++++|||+.+++++||+|++|.+ |+++|+||. .++++||+++| +
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~G--f 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMG--F 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcC--c
Confidence 999999999999999999999875 889999999999999999999999996 899999998 68999999997 5
Q ss_pred CCCCCCCccchhhhhcCchhhh-----------hh-hhhHHHHHhccHHHHHHHHHhhhcCCCCCCCCCCccCcccCCCH
Q 000860 906 LIPSGYNPATWVLEVTTTAVEE-----------KL-GVDFANVYKNSEQYREVESSIKSLSVPPDDSEPLKFASTYSQNW 973 (1250)
Q Consensus 906 ~~p~~~npad~~~~~~~~~~~~-----------~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1250)
.||++.++|||+.++++...+. .. ..|+++.|.+|+.+++.....+........++.....+.|..++
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 8999999999999999832111 11 26899999999999887765544322222333344456899999
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 000860 974 LSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILGSVFWDVGSQRDSSQSLFMVMGALYASCLFLGVNNAASVQPIVS 1053 (1250)
Q Consensus 974 ~~q~~~l~~R~~~~~~R~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~~~ 1053 (1250)
|.|++.|++|.++.+.||..++..++++.+++|+++|++|++.+. .+..+.+.|.|++||++++.+++++.++.. ..
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~-~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIAL-TF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHH-HH
Confidence 999999999999999999999999999999999999999999973 466788999999999999999999888744 55
Q ss_pred hhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000860 1054 IERTVFYREKAAGMYSPIPFAAAQGLVEIPYVFVQTLLFGVITYFMVNFERTMRKFLLYLVFTFLTFSYFTFFGMMVVGL 1133 (1250)
Q Consensus 1054 ~er~v~~rE~~~~~Y~~~~y~~a~~~~~~p~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 1133 (1250)
+.||||+|||...+|++++|.++.++.++|+.++.+++|.+|+||++||.+++++||.|++++++...|+++++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCcchhhHHhHhhCHHHHHHHHHHHHhhCCCcccccc---------------
Q 000860 1134 TPNQHLAAIISSAFYSLSNLLSGFLVPQPSIPGWWIWFYYISPVAWTLRGIISSQLGDVETMIVE--------------- 1198 (1250)
Q Consensus 1134 ~~~~~~a~~~~~~~~~~~~l~~G~~i~~~~ip~~~~w~~~isp~~y~~~~l~~ne~~~~~~~~~~--------------- 1198 (1250)
+++...|++++++.+++..+++||+||.++||+||+|++|+||+.|++|++++|||++.+.+|..
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998887751
Q ss_pred ------CCCC-CCHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000860 1199 ------PTFR-GTVKEYLKESLGYGPGMVGASAAMLVAFSVFFFGIFAFSVKFLNFQR 1249 (1250)
Q Consensus 1199 ------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 1249 (1250)
+|.. ..+.+|+...|++++.|.|+++||++||.++|.++..+++.|+++-+
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~ 733 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLK 733 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 1111 13578888899999999999999999999999999999999998643
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-74 Score=710.04 Aligned_cols=218 Identities=29% Similarity=0.425 Sum_probs=185.5
Q ss_pred CeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCc
Q 000860 647 PLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 726 (1250)
Q Consensus 647 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 726 (1250)
...++++||+|.|+.+ ++.+||+|+|++|++|+.+||+|||||||||.+.+|-...+ +..|.|.+||.
T Consensus 985 ~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~G~V~IDg~ 1052 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDAGKVKIDGV 1052 (1228)
T ss_pred eeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCc
Confidence 3479999999999864 46789999999999999999999999999999999997655 56899999999
Q ss_pred cCCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH---HcCCcccccccccCCCCC
Q 000860 727 PKEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMS---LVELDSLRHALVGSPGSF 800 (1250)
Q Consensus 727 ~~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~---~l~l~~~~~~~v~~~~~~ 800 (1250)
+++. .++|+++|.|.|+|.|| +.|++||+.|+ . . +.+.++..+..+.+-. ..+|.+-.||.+|+.+.
T Consensus 1053 dik~lnl~~LR~~i~lVsQEP~LF-~~TIrENI~YG-~---~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~- 1125 (1228)
T KOG0055|consen 1053 DIKDLNLKWLRKQIGLVSQEPVLF-NGTIRENIAYG-S---E-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV- 1125 (1228)
T ss_pred ccccCCHHHHHHhcceeccCchhh-cccHHHHHhcc-C---C-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC-
Confidence 8765 56789999999999998 56999999998 1 1 2454444332221110 23678888999998665
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
+||||||||++||||+++||+||+|||+||+||+++++.+++.|++.. .|+|.|+++|+++ +.+.+|.|+|+++ |+
T Consensus 1126 QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~-G~ 1201 (1228)
T KOG0055|consen 1126 QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKN-GK 1201 (1228)
T ss_pred cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEEC-CE
Confidence 699999999999999999999999999999999999999999999874 6999999999986 6789999999985 89
Q ss_pred EEEeCCC
Q 000860 881 VIYGGKL 887 (1250)
Q Consensus 881 ~~~~g~~ 887 (1250)
+++.|+-
T Consensus 1202 VvE~GtH 1208 (1228)
T KOG0055|consen 1202 VVEQGTH 1208 (1228)
T ss_pred EEecccH
Confidence 9999985
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=672.81 Aligned_cols=548 Identities=30% Similarity=0.529 Sum_probs=454.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccccceEEeeccccccCCCCCHHHHHHHHHHccCCCcc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGANDS 80 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~~ 80 (1250)
++||+|||||||||||++|+|+.+++...+|+|++||++.+....++.+|||.|+|.+++++||+|++.|.+.++....
T Consensus 58 l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~- 136 (613)
T KOG0061|consen 58 LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS- 136 (613)
T ss_pred EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-
Confidence 5899999999999999999999987557899999999888777889999999999999999999999999999875432
Q ss_pred hhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHHH
Q 000860 81 FAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI 160 (1250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~al 160 (1250)
+...+ .+++|+++++.|||.+|+||+||+...||+||||||||+||..|
T Consensus 137 -------~~~~~------------------------k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~El 185 (613)
T KOG0061|consen 137 -------LSKEE------------------------KRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALEL 185 (613)
T ss_pred -------CCHHH------------------------HHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHH
Confidence 11111 12358999999999999999999988899999999999999999
Q ss_pred hcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHHHHHh
Q 000860 161 VGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240 (1250)
Q Consensus 161 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~~f~~ 240 (1250)
+.||+||+|||||||||+.++.++++.|+++|++ |+|||++||||+.+++++||++++|++|+++|+|+++++.+||++
T Consensus 186 l~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~ 264 (613)
T KOG0061|consen 186 LTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSS 264 (613)
T ss_pred HcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHh
Confidence 9999999999999999999999999999999987 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCchhHHHhhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhhhhHhhccCCCCCCCCCCCcccccCcc
Q 000860 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAVPFDKSKSHPSALATTKYA 320 (1250)
Q Consensus 241 lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1250)
+|++||++.||+|++.++.+..+........ .......+.++......+............. .......
T Consensus 265 ~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 333 (613)
T KOG0061|consen 265 LGFPCPELENPADFLLDLLSVDSGTRELEEA------VRIAKLINKFSQTDNLKKTLEALEKSLSTSK-----KVEIGTS 333 (613)
T ss_pred CCCCCCCcCChHHHHHHHHccCCCchhHHhH------HHHHHHhhhccccchhhhhHHHHhhhccccc-----ccccccC
Confidence 9999999999999999877642110000000 0000000000000000000000000000000 0001115
Q ss_pred ccHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccchhHHHHHHHHHHHHHHHH-hhhHH
Q 000860 321 VSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNC-FSELP 399 (1250)
Q Consensus 321 ~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~ 399 (1250)
.++|.|+..+.+|.++..+|++.....+.++.+.+++++|.+|++...+. .....+.+++|+.+....+.. +..++
T Consensus 334 ~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~---~~~~~~~g~~~~~~~~~~f~~~~~~i~ 410 (613)
T KOG0061|consen 334 PSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDA---KGIQNRLGLFFFILSFMTFLSMFGAVP 410 (613)
T ss_pred CcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 78999999999999999999999999999999999999999999874332 234467788888887775554 44688
Q ss_pred HhhhcchhHHHhhhCCCCChhHHHHHHHHHHHhHHHHHHHHHHhhhhcccccccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 000860 400 ILISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLYRMM 479 (1250)
Q Consensus 400 ~~~~~~~v~~~e~~~~~y~~~~~~la~~l~~lp~~~~~~~i~~~ivy~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~~~i 479 (1250)
.+..+++++.||+..++|+.++|++++.+.++|+.++.+++|.+++|||+|+.++..+|+.+.++.++....+.+++.++
T Consensus 411 ~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i 490 (613)
T KOG0061|consen 411 VFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFI 490 (613)
T ss_pred HhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhCHHHHHHHHHHHhhcCCccccccCC--Cccccccch
Q 000860 480 ASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATRWMKKSA--IGNNTVGYN 557 (1250)
Q Consensus 480 ~~~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~yisp~~y~~~a~~~~ef~~~~~~~~~~--~~~~~~g~~ 557 (1250)
+++.++...+..+++.+...+++++||+++...+|.||.|+.|+|+.+|++++++.|+|......|... ..+...+..
T Consensus 491 ~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 570 (613)
T KOG0061|consen 491 SAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGED 570 (613)
T ss_pred HHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999998622222221 234456667
Q ss_pred hccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000860 558 VLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLN 597 (1250)
Q Consensus 558 ~l~~~~~~~~~~~~w~~~~ill~~~~~f~~~~~~~l~~~~ 597 (1250)
++...++... ..|.++.+++.+.+.|.++.++++++..
T Consensus 571 ~l~~~~~~~~--~~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 571 VLKQLGFEDS--SFWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred HHHhcCCccc--ccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7776666543 4688999999999999999999887654
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-70 Score=678.76 Aligned_cols=551 Identities=26% Similarity=0.437 Sum_probs=456.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccccceEEeeccccccCCCCCHHHHHHHHHHccCCCcc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGANDS 80 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~~ 80 (1250)
+++|+|||||||||||++|+|+.+++...+|+|.+||.+++....++.++||+|+|.+++++||+|||.|+++++.....
T Consensus 53 ~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~ 132 (617)
T TIGR00955 53 LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRV 132 (617)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCC
Confidence 58999999999999999999998765446899999999887556678899999999999999999999999877532210
Q ss_pred hhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCc-cccCccccchhhHHHHH
Q 000860 81 FAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEM-LRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~-~~~LSGGqkqRv~iA~a 159 (1250)
...++ +.+++++++.+||.+++||.||+++ .++|||||||||+||++
T Consensus 133 --------~~~~~------------------------~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~a 180 (617)
T TIGR00955 133 --------TKKEK------------------------RERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASE 180 (617)
T ss_pred --------CHHHH------------------------HHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHH
Confidence 00010 1237889999999999999999864 67899999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHHHHH
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFE 239 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~~f~ 239 (1250)
|+.+|++++|||||||||+.++.++++.|+++++ .|+|+|+++||++.++.+.||++++|++|+++++|+++++.+||+
T Consensus 181 L~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~ 259 (617)
T TIGR00955 181 LLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFS 259 (617)
T ss_pred HHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999999986 489999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCCchhHHHhhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhhhhHhhccCCCCCCC---CCCCcccc
Q 000860 240 SLGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAVPFDKSK---SHPSALAT 316 (1250)
Q Consensus 240 ~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~ 316 (1250)
++|++||++.+++|++.++.+....... ......++..+.+++++.+++............. ........
T Consensus 260 ~~g~~~p~~~n~ad~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (617)
T TIGR00955 260 DLGHPCPENYNPADFYVQVLAVIPGSEN-------ESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEG 332 (617)
T ss_pred HcCCCCCCCCChHHHHHHHhhcCccccc-------chHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccc
Confidence 9999999999999999887654321110 0001123344455544443333222111110000 00001112
Q ss_pred cCccccHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccchhHHHHHHHHHHHHHHHH-h
Q 000860 317 TKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNC-F 395 (1250)
Q Consensus 317 ~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~ 395 (1250)
.++..+++.|+..+++|.++..+|++.++..+.++.+++++++|.+|++.+.+ ..+...+.+++|+.+....+.. +
T Consensus 333 ~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~---~~~~~~~~g~lf~~~~~~~f~~~~ 409 (617)
T TIGR00955 333 IGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT---QKGVQNINGALFLFLTNMTFQNVF 409 (617)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999976533 2355667788888877766654 4
Q ss_pred hhHHHhhhcchhHHHhhhCCCCChhHHHHHHHHHHHhHHHHHHHHHHhhhhcccccccChhHHHHHHHHHHHHHHHHHHH
Q 000860 396 SELPILISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGL 475 (1250)
Q Consensus 396 ~~~~~~~~~~~v~~~e~~~~~y~~~~~~la~~l~~lp~~~~~~~i~~~ivy~~~gl~~~~~~f~~~~~~~~~~~~~~~~l 475 (1250)
..++.+..++++++||+..++|++++|++++.+.++|..++.+++|.+++|||+|+.+++..|+.+++++++...++.++
T Consensus 410 ~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~ 489 (617)
T TIGR00955 410 PVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSF 489 (617)
T ss_pred HHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 66778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhCHHHHHHHHHHHhhcCCccc-cccCCC-c--c
Q 000860 476 YRMMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATRW-MKKSAI-G--N 551 (1250)
Q Consensus 476 ~~~i~~~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~yisp~~y~~~a~~~~ef~~~~~-~~~~~~-~--~ 551 (1250)
+.++++++++..+|..+++++.+++++++||+++...+|.||+|++|+||++|++++++.|||.+..+ .|.... . +
T Consensus 490 ~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c 569 (617)
T TIGR00955 490 GYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPC 569 (617)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988665 343211 1 2
Q ss_pred ccccchhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000860 552 NTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYL 596 (1250)
Q Consensus 552 ~~~g~~~l~~~~~~~~~~~~w~~~~ill~~~~~f~~~~~~~l~~~ 596 (1250)
...|..+++.++++.. +.|.++++++++.++|.++.++++++.
T Consensus 570 ~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 570 PSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2357888888887654 458999999999999999999988764
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-69 Score=669.98 Aligned_cols=548 Identities=23% Similarity=0.396 Sum_probs=434.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccccceEEeeccccccCCCCCHHHHHHHHHHccCCCcc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGANDS 80 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~~ 80 (1250)
+++|+|||||||||||++|+|+.+|+ ..+|+|.+||+++.. ..++.++||+|++.+++.+||+||+.|++.++.....
T Consensus 96 ~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~ 173 (659)
T PLN03211 96 ILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSL 173 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCC
Confidence 48999999999999999999998763 369999999998753 2345699999999999999999999998765421110
Q ss_pred hhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHHH
Q 000860 81 FAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI 160 (1250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~al 160 (1250)
...+ .+++++++++.+||++++||.||+...++|||||||||+||++|
T Consensus 174 --------~~~~------------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL 221 (659)
T PLN03211 174 --------TKQE------------------------KILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 221 (659)
T ss_pred --------CHHH------------------------HHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHH
Confidence 0000 01236789999999999999999988899999999999999999
Q ss_pred hcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHHHHHh
Q 000860 161 VGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFES 240 (1250)
Q Consensus 161 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~~f~~ 240 (1250)
+.+|+||+|||||+|||+.++.++++.|+++++ .|+|+|+++|++..++.+.+|++++|++|++++.|+++++.+||++
T Consensus 222 ~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~ 300 (659)
T PLN03211 222 LINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFES 300 (659)
T ss_pred HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHH
Confidence 999999999999999999999999999999986 5899999999988889999999999999999999999999999999
Q ss_pred CCCCCCCCCCchhHHHhhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhhhhHhhccC---CCCCCC-----CCCC
Q 000860 241 LGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAV---PFDKSK-----SHPS 312 (1250)
Q Consensus 241 lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---~~~~~~-----~~~~ 312 (1250)
+|++||++.||+||+.++.+.............+ ...+...+.|++.. ..+.....+. ...... ..+.
T Consensus 301 ~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (659)
T PLN03211 301 VGFSPSFPMNPADFLLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKE 376 (659)
T ss_pred CCCCCCCCCCHHHHHHHHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccc
Confidence 9999999999999999987643211000000000 01122223332211 0110000000 000000 0000
Q ss_pred c-ccccCccccHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccchhHHHHHHHHHHHHH
Q 000860 313 A-LATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCHFFGMVHMM 391 (1250)
Q Consensus 313 ~-~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 391 (1250)
. .....+..++++|+..+++|.++. +|++.+...++++.+++|+++|++|++.+ ..+.+.+.|++||.+.+..
T Consensus 377 ~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~ 450 (659)
T PLN03211 377 HRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWG 450 (659)
T ss_pred cccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHH
Confidence 0 011123467999999999999888 78888888999999999999999999753 2356778899998877644
Q ss_pred -HHHhhhHHHhhhcchhHHHhhhCCCCChhHHHHHHHHHHHhHHHHHHHHHHhhhhcccccccChhHHHHHHHHHHHHHH
Q 000860 392 -FNCFSELPILISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQ 470 (1250)
Q Consensus 392 -~~~~~~~~~~~~~~~v~~~e~~~~~y~~~~~~la~~l~~lp~~~~~~~i~~~ivy~~~gl~~~~~~f~~~~~~~~~~~~ 470 (1250)
...+..++.+..++++++||+..++|++++|++|++++++|+.++.+++|++|+|||+|+.+++.+|+.+++++++...
T Consensus 451 ~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~ 530 (659)
T PLN03211 451 VFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVL 530 (659)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHH
Confidence 4667888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhCHHHHHHHHHHHhhcCCccc-----cc
Q 000860 471 MALGLYRMMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATRW-----MK 545 (1250)
Q Consensus 471 ~~~~l~~~i~~~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~yisp~~y~~~a~~~~ef~~~~~-----~~ 545 (1250)
++.+++.+++++++++..|+.+++++..++++++||+++ .+|.||+|++|+||++|++++++.|||...+. .|
T Consensus 531 ~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C 608 (659)
T PLN03211 531 VSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGC 608 (659)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCC
Confidence 999999999999999999999999999999999999996 79999999999999999999999999976432 23
Q ss_pred cCCCccccccchhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000860 546 KSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLN 597 (1250)
Q Consensus 546 ~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~ill~~~~~f~~~~~~~l~~~~ 597 (1250)
....+.......++....+. ....|.++++++++.+++.++.++++++.+
T Consensus 609 ~~~~~~~~~~c~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 609 SLPHGSDRASCKFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred CCcccCCCCCCccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22111111111122222222 234788999999999999999998887543
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-68 Score=696.57 Aligned_cols=224 Identities=25% Similarity=0.387 Sum_probs=195.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+. +++.+|+|||+.|++||++||+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEEC
Confidence 5899999988742 13569999999999999999999999999999999999876 3589999999886
Q ss_pred Cc--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000860 729 EQ--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQ 806 (1250)
Q Consensus 729 ~~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGe 806 (1250)
.. ...++.+|||||++.+++.+||+|++.+.+.++ +.++++.+++++++++.++|.+.+|+.++. |||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~-----LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGT-----YSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChhh-----CCHHH
Confidence 42 234567999999999999999999999887765 234455567789999999999999988865 99999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCC
Q 000860 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 807 rqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
|||++||+||+.+|+|++|||||+|||+.+++.+++.|++++++|+|||+|+|+++ ++..+|||+++|.+ |+++..|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999985 68889999999985 89999998
Q ss_pred CCccchhHHHHhh
Q 000860 887 LGVHSQIMIDYFQ 899 (1250)
Q Consensus 887 ~~~~~~~~~~yf~ 899 (1250)
. +++..-|.
T Consensus 2154 ~----q~Lk~~~g 2162 (2272)
T TIGR01257 2154 I----QHLKSKFG 2162 (2272)
T ss_pred H----HHHHHHhC
Confidence 7 55655554
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-67 Score=660.82 Aligned_cols=738 Identities=20% Similarity=0.236 Sum_probs=393.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccccceEEeeccccccCCCCCHHHHHHHHHHccCCCcc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGANDS 80 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~~ 80 (1250)
++||+||.|||||+||.+|+|+++. .+|+|.++| .++||||+ +|+.+.||||||.||... +++
T Consensus 549 lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~g----------siaYv~Q~-pWI~ngTvreNILFG~~~---d~~ 611 (1381)
T KOG0054|consen 549 LVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNG----------SVAYVPQQ-PWIQNGTVRENILFGSPY---DEE 611 (1381)
T ss_pred EEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcC----------eEEEeccc-cHhhCCcHHHhhhcCccc---cHH
Confidence 4799999999999999999999984 599999998 48999999 555678999999997542 122
Q ss_pred hhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHHH
Q 000860 81 FAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI 160 (1250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~al 160 (1250)
+++...+.|.++++-+ -|+++..|.||++|+. |||||||||++|||+
T Consensus 612 rY~~Vi~aC~L~~Dle--------------------------------~Lp~GD~TeIGErGin-LSGGQKqRIsLARAV 658 (1381)
T KOG0054|consen 612 RYDKVIKACALKKDLE--------------------------------ILPFGDLTEIGERGIN-LSGGQKQRISLARAV 658 (1381)
T ss_pred HHHHHHHHccCHhHHh--------------------------------hcCCCCcceecCCccC-CcHhHHHHHHHHHHH
Confidence 2222222222222211 1455668999998775 999999999999999
Q ss_pred hcCCcEeeeeCCCccccHHHHHHHHH-HHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH---
Q 000860 161 VGPRKTLFMDEISTGLDSSTTFQIVK-CVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE--- 236 (1250)
Q Consensus 161 ~~~p~illLDEPtsgLD~~~~~~i~~-~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~--- 236 (1250)
++++||++||+|.|++|+++..+|++ +++.+.+ ++|+|+++|| .+..+.+|.|++|++|+|.+.|+++|+.+
T Consensus 659 Y~~adIYLLDDplSAVDahvg~~if~~ci~~~L~--~KT~ILVTHq--l~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~ 734 (1381)
T KOG0054|consen 659 YQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLR--GKTVILVTHQ--LQFLPHADQIIVLKDGKIVESGTYEELLKSGG 734 (1381)
T ss_pred hccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhc--CCEEEEEeCc--hhhhhhCCEEEEecCCeEecccCHHHHHhcch
Confidence 99999999999999999999999985 6766654 6899998775 58889999999999999999999999874
Q ss_pred HHHhCCCCCCCCCCchhHHHhhcCchhhhhhh-ccC-CCCCCC-CCHHHHHHHHHhChhhhhhHhhccCCCCCCCCCCCc
Q 000860 237 FFESLGFRLPPRKGVADFLQEVTSKKDQAKYW-ADT-SKPYVF-LPVSEIANAFKSSRFGKSLESSLAVPFDKSKSHPSA 313 (1250)
Q Consensus 237 ~f~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 313 (1250)
.|+.+ ....+.+... ... ..+... ....+. +..+. ... ..+.....+........
T Consensus 735 ~~~~l-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~-~~~~~~~~~~~~~~~~~ 792 (1381)
T KOG0054|consen 735 DFAEL-----------------AHEEESEQEEEASEKDLESGESSRESES-RSLES---LSS-EEEKSKDEKEEEDKLVQ 792 (1381)
T ss_pred hHHHH-----------------hhccchhhccccccccccccccccchhh-hhhhh---hcc-cccccccccchhhHHHH
Confidence 22221 0000000000 000 000000 000000 00000 000 00000000000000000
Q ss_pred ccccCccccHHHHHHHHHHHHHHHHhcChhHHHH-HHHHHHH-HHHHHHHhhcccCCCCCC--c---ccchhHHHHHHHH
Q 000860 314 LATTKYAVSKWELFRTCFAREILLISRHRFFYMF-RTCQVAF-VGFLTCTMFLKTRQHPTD--E---KKGALYLNCHFFG 386 (1250)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~-~~~~~~~-~~l~~g~~f~~~~~~~~~--~---~~~~~~~~~~f~~ 386 (1250)
....+...-.|+.++.+++- ......... ....... ........|+..+.+... . .+...+.+++...
T Consensus 793 ~ee~~~G~v~~~vY~~Y~~a-----~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l 867 (1381)
T KOG0054|consen 793 EEERETGKVSWSVYKKYIKA-----AGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALL 867 (1381)
T ss_pred HHHHhcCEeeHHHHHHHHHh-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHH
Confidence 00001111123333333221 011111111 1111111 111222234333322211 0 1111222211111
Q ss_pred -HHHHHHHHhhhHHHhh----hcchhHHHh------hhCCCC---------ChhHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 000860 387 -MVHMMFNCFSELPILI----SRLPVFYKQ------RDNYFH---------PAWAWSIASWILRVPLSIIEAVVWSCIVY 446 (1250)
Q Consensus 387 -~~~~~~~~~~~~~~~~----~~~~v~~~e------~~~~~y---------~~~~~~la~~l~~lp~~~~~~~i~~~ivy 446 (1250)
+...++.....+.... ..+.++.+- ....|+ .-++-.+...-..+|..+...+...+.+-
T Consensus 868 ~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l 947 (1381)
T KOG0054|consen 868 GVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVL 947 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHH
Confidence 1111111111111100 001111000 001111 11111122222233433222111000000
Q ss_pred cccccc-cChhHHHHHHHHHHHHHHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHHHHHHhcccc--------cC
Q 000860 447 YTLGFA-PGAGRFFRYMLLLFSIHQMALGLY-------RMMASIARDMVIANTFGSASMLAILLLGGFII--------PK 510 (1250)
Q Consensus 447 ~~~gl~-~~~~~f~~~~~~~~~~~~~~~~l~-------~~i~~~~~~~~ia~~~~~~~~~~~~l~~Gf~i--------~~ 510 (1250)
..++.. .....|+.....+....+....+| .-+.++++++...++-..+..+..+-..|-.- ..
T Consensus 948 ~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~ 1027 (1381)
T KOG0054|consen 948 GILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELI 1027 (1381)
T ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHh
Confidence 000000 000112222222222222222222 45677888888887766554433221111000 00
Q ss_pred -CCCccc------hhhhh----hhCHHHHHHHHHHHhhcCCccccccCCCccccccchhccccccCCCCchhHHHHHHHH
Q 000860 511 -ESIKSW------WIWMY----WVSPLSYGQSAISVNEFTATRWMKKSAIGNNTVGYNVLHSHSLPTDDYWYWLGVGVML 579 (1250)
Q Consensus 511 -~~i~~~------~~w~~----yisp~~y~~~a~~~~ef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~ill 579 (1250)
.+...| .+|+. .++-+.....++..- +...+. . .--.+|+.+
T Consensus 1028 D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~v----------------------l~~~~~-~----~~g~vGLsl 1080 (1381)
T KOG0054|consen 1028 DENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAV----------------------LLPSGL-I----SPGLVGLSL 1080 (1381)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HccCCC-C----CcchHHHHH
Confidence 000000 01110 011111111111000 000000 0 001234444
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCccccccccccchhhhccccccccccccccCCcccCCCCCcccCCCCeeEEEEeEEEEE
Q 000860 580 LYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKGMIMPFHPLTMTFHNISYYV 659 (1250)
Q Consensus 580 ~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 659 (1250)
.+++........+++....++.....+++.. +......+ .+...+...++++||.+| .++|+|++.+|
T Consensus 1081 syal~lt~~l~~~vR~~~elEn~m~SVERv~---eY~~~~~E-~p~~~~~~~pp~~WP~~G--------~I~f~~~~~RY 1148 (1381)
T KOG0054|consen 1081 SYALQLTGLLQWLVRQSSELENNMVSVERVL---EYTDIPSE-APLEIEESRPPPSWPSKG--------EIEFEDLSLRY 1148 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhhHHH---HHhcCCCC-CCCCCcCCCCCCCCCCCC--------eEEEEEeEEEe
Confidence 4444444444444443332222111111000 00000000 001111111223344333 68999999988
Q ss_pred eCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc---ccccce
Q 000860 660 DTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFARI 736 (1250)
Q Consensus 660 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~ 736 (1250)
.. +...+|||||++|+|||++||+|++|||||||+++|.+... +.+|+|.|||.++.+ .++|++
T Consensus 1149 rp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvdI~~igL~dLRsr 1215 (1381)
T KOG0054|consen 1149 RP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVDISKIGLHDLRSR 1215 (1381)
T ss_pred CC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCeecccccHHHHHhc
Confidence 53 34579999999999999999999999999999999998765 357999999999876 568899
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCcCCHHHHHH
Q 000860 737 SGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSPGSFGLSTEQRKR 809 (1250)
Q Consensus 737 ~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~v~~~~~~~lSgGerqr 809 (1250)
++.+||||.+|. -|||+|| ++-...++++.++ +++..+|.+ ..|..+.+ ++.++|-||||.
T Consensus 1216 lsIIPQdPvLFs-GTvR~NL------DPf~e~sD~~IW~----ALe~~~Lk~~v~~~p~~Ld~~v~e-gG~N~SvGQRQL 1283 (1381)
T KOG0054|consen 1216 LSIIPQDPVLFS-GTVRFNL------DPFDEYSDDEIWE----ALERCQLKDVVSSLPGGLDSEVSE-GGENFSVGQRQL 1283 (1381)
T ss_pred CeeeCCCCceec-Ccccccc------CcccccCHHHHHH----HHHHhChHHHHhhCCcCCCceecC-CCccCChHHHHH
Confidence 999999999995 5999976 3334556666544 444444433 34555544 445799999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 810 ~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
+|+||||+++++||+|||+|+++|++|...|+++||+.. +++|||.++|+.+ ....+|||+||++ |+++++|++
T Consensus 1284 lCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~--TVmd~DrVlVld~-G~v~EfdsP 1357 (1381)
T KOG0054|consen 1284 LCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLN--TVMDSDRVLVLDA-GRVVEFDSP 1357 (1381)
T ss_pred HHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccc--hhhhcCeEEEeeC-CeEeecCCh
Confidence 999999999999999999999999999999999999875 4899999999975 5668999999986 789988887
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-64 Score=674.91 Aligned_cols=211 Identities=23% Similarity=0.311 Sum_probs=177.7
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++|+|++++|+. +.+++|+|+|++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.++
T Consensus 1237 ~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI 1303 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCDI 1303 (1622)
T ss_pred cEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEec
Confidence 6899999999842 22469999999999999999999999999999999999876 4579999999987
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-------SLRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~v~~~~ 798 (1250)
++ ..+|++++|||||+.+|.. |+||||.+.. ..++++ +.++++..++. .-.|+.+|+.+
T Consensus 1304 ~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tdee----i~~Al~~a~l~~~I~~lp~GLdt~Vge~G 1372 (1622)
T PLN03130 1304 SKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDAD----LWESLERAHLKDVIRRNSLGLDAEVSEAG 1372 (1622)
T ss_pred ccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCHHH----HHHHHHHcCcHHHHHhCccccCccccCCC
Confidence 64 4678899999999999965 9999996531 233333 45566665553 34567777643
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
.+||||||||++|||||+++|+||+||||||+||++++..|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1373 -~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~- 1447 (1622)
T PLN03130 1373 -ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA- 1447 (1622)
T ss_pred -CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC-
Confidence 4699999999999999999999999999999999999999999999875 4899999999975 5678999999985
Q ss_pred cEEEEeCCCC
Q 000860 879 GRVIYGGKLG 888 (1250)
Q Consensus 879 g~~~~~g~~~ 888 (1250)
|++++.|+++
T Consensus 1448 G~IvE~Gt~~ 1457 (1622)
T PLN03130 1448 GRVVEFDTPE 1457 (1622)
T ss_pred CEEEEeCCHH
Confidence 7999999873
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-64 Score=580.33 Aligned_cols=459 Identities=25% Similarity=0.312 Sum_probs=351.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC-CceeeEEEECCeecCccc-------ccceEEeecccc--ccCCCCCHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGN-LNKSGSITYNGWELDEFQ-------VQRASAYIGQTD--NHIAELTVRETLDF 70 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~-~~~~G~v~~~g~~~~~~~-------~~~~~~yv~Q~~--~~~~~~TV~e~l~f 70 (1250)
+++|+|.|||||||+.++|.|++++. ...+|+|.++|.++.... ..+.++|++|++ .+-|-+||.+.|.-
T Consensus 37 ~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E 116 (539)
T COG1123 37 ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIRE 116 (539)
T ss_pred EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHH
Confidence 47999999999999999999999865 346899999998763221 135799999996 66677899999876
Q ss_pred HHHccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCcccc
Q 000860 71 AARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQ 150 (1250)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 150 (1250)
..+.++.... . +.+.++.++|+..||++.... +.+.++|||||
T Consensus 117 ~~~~h~~~~~----------~------------------------ea~~~a~elL~~Vgl~~~~~~---~~yPheLSGG~ 159 (539)
T COG1123 117 ALRLHGKGSR----------A------------------------EARKRAVELLEQVGLPDPERR---DRYPHQLSGGM 159 (539)
T ss_pred HHHHhccccH----------H------------------------HHHHHHHHHHHHcCCCChhhh---ccCCcccCchH
Confidence 6554431110 0 012246788999999886554 45678899999
Q ss_pred chhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecC
Q 000860 151 KKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGP 230 (1250)
Q Consensus 151 kqRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~ 230 (1250)
||||.||+||+.+|++||+||||++||+.++.+|++.|+++.++.|.++|++ +|+..-+.++||||+||.+|++++.|+
T Consensus 160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~I-THDl~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFI-THDLGVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEE-cCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999998888887775 677888889999999999999999999
Q ss_pred hhhHHHHHHhCCCCCCCCCCchhHHHhhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhhhhHhhccCCCCCCCCC
Q 000860 231 RAEVLEFFESLGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAVPFDKSKSH 310 (1250)
Q Consensus 231 ~~~~~~~f~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 310 (1250)
.+++.+. |.+ |++
T Consensus 239 ~~~i~~~--------p~h-------------------------pYT---------------------------------- 251 (539)
T COG1123 239 TEEILSN--------PQH-------------------------PYT---------------------------------- 251 (539)
T ss_pred HHHHHhc--------cCC-------------------------ccc----------------------------------
Confidence 9998541 110 000
Q ss_pred CCcccccCccccHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccchhHHHHHHHHHHHH
Q 000860 311 PSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCHFFGMVHM 390 (1250)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~ 390 (1250)
. .+. .
T Consensus 252 ----------~-------~Ll-----------------------------------~----------------------- 256 (539)
T COG1123 252 ----------R-------GLL-----------------------------------A----------------------- 256 (539)
T ss_pred ----------H-------HHH-----------------------------------h-----------------------
Confidence 0 000 0
Q ss_pred HHHHhhhHHHhhhcchhHHHhhhCCCCChhHHHHHHHHHHHhHHHHHHHHHHhhhhcccccccChhHHHHHHHHHHHHHH
Q 000860 391 MFNCFSELPILISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQ 470 (1250)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~~~e~~~~~y~~~~~~la~~l~~lp~~~~~~~i~~~ivy~~~gl~~~~~~f~~~~~~~~~~~~ 470 (1250)
+
T Consensus 257 ---a---------------------------------------------------------------------------- 257 (539)
T COG1123 257 ---A---------------------------------------------------------------------------- 257 (539)
T ss_pred ---h----------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhCHHHHHHHHHHHhhcCCccccccCCCc
Q 000860 471 MALGLYRMMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATRWMKKSAIG 550 (1250)
Q Consensus 471 ~~~~l~~~i~~~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~yisp~~y~~~a~~~~ef~~~~~~~~~~~~ 550 (1250)
.|.. ... .
T Consensus 258 ------------------------------------------~p~~----------------------~~~--~------ 265 (539)
T COG1123 258 ------------------------------------------VPRL----------------------GDE--K------ 265 (539)
T ss_pred ------------------------------------------CCCc----------------------ccc--c------
Confidence 0000 000 0
Q ss_pred cccccchhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCccccccccccchhhhcccccccccccccc
Q 000860 551 NNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKGVASQGCELKTT 630 (1250)
Q Consensus 551 ~~~~g~~~l~~~~~~~~~~~~w~~~~ill~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1250)
. . ..
T Consensus 266 ----------------------------------------------------------~------~------~~------ 269 (539)
T COG1123 266 ----------------------------------------------------------I------I------RL------ 269 (539)
T ss_pred ----------------------------------------------------------c------c------cc------
Confidence 0 0 00
Q ss_pred CCcccCCCCCcccCCCCeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 000860 631 SSREDGKKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g 710 (1250)
...... + ....++++|+++.|..+..+. ....+...+++||||.+++||++||+|+||||||||.++|+|
T Consensus 270 -~~~~~~------~-~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 270 -PRRGPL------R-AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred -cccccc------c-cCceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhC
Confidence 000000 0 011478899998887543221 111235678999999999999999999999999999999999
Q ss_pred CCCCCeeEEEEEECCccC--Cc---ccccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Q 000860 711 RKTGGYIEGDIKISGYPK--EQ---STFARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSL 783 (1250)
Q Consensus 711 ~~~~~~~~G~i~~~g~~~--~~---~~~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~ 783 (1250)
..++ .+|.|.++|.+. +. ...++.+-+|+||+ .+.|.+||++++......... ....+.++++.++++.
T Consensus 340 L~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~ 415 (539)
T COG1123 340 LLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLEL 415 (539)
T ss_pred CCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHH
Confidence 8774 579999999762 11 23456677888886 578999999999877654432 2356677889999999
Q ss_pred cCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCC
Q 000860 784 VELDS-LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQP 861 (1250)
Q Consensus 784 l~l~~-~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~ 861 (1250)
.||.. ..++.+. .||||||||++|||||+.+|++|++|||||.||+..+..+.+.|+++.++ |.|.|+++||.
T Consensus 416 VgL~~~~l~ryP~-----elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl 490 (539)
T COG1123 416 VGLPPEFLDRYPH-----ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL 490 (539)
T ss_pred cCCCHHHHhcCch-----hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH
Confidence 99986 4555554 59999999999999999999999999999999999999999999999765 99999999998
Q ss_pred CHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 862 SIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 862 ~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
. -+...||||++|.+ |+++..||.
T Consensus 491 ~-vV~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 491 A-VVRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred H-HHHhhCceEEEEEC-CeEEEeCCH
Confidence 5 47789999999985 899999975
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-64 Score=673.72 Aligned_cols=210 Identities=21% Similarity=0.305 Sum_probs=177.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++|+|++++|+. +.+++|+|+|++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.++
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEh
Confidence 5999999999842 23469999999999999999999999999999999999876 4589999999987
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~v~~~~ 798 (1250)
++ ..+|++++|||||+.+|+. |+||||.+. .+.++++ +.++++..++.+ -.|+.+|+.+
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~------~~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~G 1369 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPF------SEHNDAD----LWEALERAHIKDVIDRNPFGLDAEVSEGG 1369 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCC------CCCCHHH----HHHHHHHcCCHHHHHhCcCCCCceecCCC
Confidence 54 5678899999999999965 999998643 1234433 556666666543 3467777643
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
.+||||||||++|||||+++|+||+||||||+||+++++.|++.|++.. +++|+|+++|+++ ....+|+|++|++
T Consensus 1370 -~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~- 1444 (1495)
T PLN03232 1370 -ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS- 1444 (1495)
T ss_pred -CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 4699999999999999999999999999999999999999999999875 5899999999974 5678999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|++
T Consensus 1445 G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 GQVLEYDSP 1453 (1495)
T ss_pred CEEEEECCH
Confidence 799999986
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-63 Score=658.09 Aligned_cols=216 Identities=21% Similarity=0.344 Sum_probs=179.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-------------
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG------------- 715 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~------------- 715 (1250)
.++|+||+|.|+.. +++++|+|+||+|+|||++||+||||||||||+++|.|..++.
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 58999999999642 1346999999999999999999999999999999999976531
Q ss_pred ---------------------------------------eeEEEEEECCccCCc---ccccceEEEEcCCCCCCCCCCHH
Q 000860 716 ---------------------------------------YIEGDIKISGYPKEQ---STFARISGYVEQEDVHSPQVTIE 753 (1250)
Q Consensus 716 ---------------------------------------~~~G~i~~~g~~~~~---~~~~~~~~yv~q~~~~~~~ltv~ 753 (1250)
+.+|+|.+||.++.. ..+|+.+|||+|++.+| ..|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHH
Confidence 147999999998654 56788999999999988 57999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-------CcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000860 754 ESLWFSANLRLPKEISKDQRHEFVEEVMSLVE-------LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMD 826 (1250)
Q Consensus 754 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~-------l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lD 826 (1250)
|||.|+. + +.++++ ++++++..+ |.+-.||.+|+.+ ..||||||||++|||||+++|+||+||
T Consensus 1314 eNI~~g~----~-~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK----E-DATRED----VKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC----C-CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999862 1 234443 455555544 4455688898644 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhcceeeeecC---cE-EEEeCCC
Q 000860 827 EPTSGLDARAAAIVMRAVRNTV-DTGRTVVCTIHQPSIEIFEAFDELLLMKRG---GR-VIYGGKL 887 (1250)
Q Consensus 827 EPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g---g~-~~~~g~~ 887 (1250)
||||+||+++++.|++.|+++. .+++|+|+++|+++ ..+.+|+|++|++| |+ ++..|+.
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 9999999999999999999986 36899999999974 67889999999872 56 5578875
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-63 Score=605.54 Aligned_cols=445 Identities=21% Similarity=0.301 Sum_probs=337.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc----ccceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ----VQRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||||||||+++|+|+++|. +.+|+|.++|.++.... .++.++||+|++.+++.+||+||+.++.....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 111 (506)
T PRK13549 33 IVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITP 111 (506)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccc
Confidence 47999999999999999999999752 35999999999875432 24569999999889999999999988643210
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
.... ...+ ...+++++++.+||.+..++.+++ |||||||||+|
T Consensus 112 ~~~~--------~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGqkqrv~l 154 (506)
T PRK13549 112 GGIM--------DYDA------------------------MYLRAQKLLAQLKLDINPATPVGN-----LGLGQQQLVEI 154 (506)
T ss_pred cCCc--------CHHH------------------------HHHHHHHHHHHcCCCCCcccchhh-----CCHHHHHHHHH
Confidence 0000 0000 011366789999998877877765 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||||+.+|++|||||||+|||+.++..+.+.|+++++ .++|+|++ +|+...+.+.+|++++|++|++++.|+.+++..
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~-tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 232 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYI-SHKLNEVKAISDTICVIRDGRHIGTRPAAGMTE 232 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCcHHHHHHhcCEEEEEECCEEeeecccccCCH
Confidence 9999999999999999999999999999999999865 47788776 456778888999999999999998877543210
Q ss_pred HHHhCCCCCCCCCCchhHHHhhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhhhhHhhccCCCCCCCCCCCcccc
Q 000860 237 FFESLGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAVPFDKSKSHPSALAT 316 (1250)
Q Consensus 237 ~f~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1250)
.+..+.
T Consensus 233 --------------------------------------------~~~~~~------------------------------ 238 (506)
T PRK13549 233 --------------------------------------------DDIITM------------------------------ 238 (506)
T ss_pred --------------------------------------------HHHHHH------------------------------
Confidence 000000
Q ss_pred cCccccHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccchhHHHHHHHHHHHHHHHHhh
Q 000860 317 TKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFS 396 (1250)
Q Consensus 317 ~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 396 (1250)
+. . ..
T Consensus 239 ----------------------------------------------~~--~--~~------------------------- 243 (506)
T PRK13549 239 ----------------------------------------------MV--G--RE------------------------- 243 (506)
T ss_pred ----------------------------------------------hh--C--cC-------------------------
Confidence 00 0 00
Q ss_pred hHHHhhhcchhHHHhhhCCCCChhHHHHHHHHHHHhHHHHHHHHHHhhhhcccccccChhHHHHHHHHHHHHHHHHHHHH
Q 000860 397 ELPILISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLY 476 (1250)
Q Consensus 397 ~~~~~~~~~~v~~~e~~~~~y~~~~~~la~~l~~lp~~~~~~~i~~~ivy~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~ 476 (1250)
T Consensus 244 -------------------------------------------------------------------------------- 243 (506)
T PRK13549 244 -------------------------------------------------------------------------------- 243 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhCHHHHHHHHHHHhhcCCccccccCCCccccccc
Q 000860 477 RMMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATRWMKKSAIGNNTVGY 556 (1250)
Q Consensus 477 ~~i~~~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~yisp~~y~~~a~~~~ef~~~~~~~~~~~~~~~~g~ 556 (1250)
..
T Consensus 244 ------------------------------------~~------------------------------------------ 245 (506)
T PRK13549 244 ------------------------------------LT------------------------------------------ 245 (506)
T ss_pred ------------------------------------cc------------------------------------------
Confidence 00
Q ss_pred hhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCccccccccccchhhhccccccccccccccCCcccC
Q 000860 557 NVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKGVASQGCELKTTSSREDG 636 (1250)
Q Consensus 557 ~~l~~~~~~~~~~~~w~~~~ill~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1250)
.. .. . . ...
T Consensus 246 --------------------------------------------~~---~~-----------~---~--------~~~-- 254 (506)
T PRK13549 246 --------------------------------------------AL---YP-----------R---E--------PHT-- 254 (506)
T ss_pred --------------------------------------------cc---cc-----------c---c--------ccC--
Confidence 00 00 0 0 000
Q ss_pred CCCCcccCCCCeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCe
Q 000860 637 KKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY 716 (1250)
Q Consensus 637 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~ 716 (1250)
. + ...++++|+++.++.. +++++|+|+||+|++||+++|+||||||||||+|+|+|..++ +
T Consensus 255 ~--~------~~~l~~~~l~~~~~~~----------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~ 315 (506)
T PRK13549 255 I--G------EVILEVRNLTAWDPVN----------PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG-R 315 (506)
T ss_pred C--C------CceEEEecCccccccc----------cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-C
Confidence 0 0 0146788888765210 124589999999999999999999999999999999997642 1
Q ss_pred eEEEEEECCccCCc----ccccceEEEEcCCC---CCCCCCCHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHHcCCc
Q 000860 717 IEGDIKISGYPKEQ----STFARISGYVEQED---VHSPQVTIEESLWFSANLRLPK--EISKDQRHEFVEEVMSLVELD 787 (1250)
Q Consensus 717 ~~G~i~~~g~~~~~----~~~~~~~~yv~q~~---~~~~~ltv~e~l~~~~~l~~~~--~~~~~~~~~~v~~~l~~l~l~ 787 (1250)
.+|+|.++|.++.. ...++.++|++|++ .+++.+||.|++.+........ ..+.++.+++++++++.+++.
T Consensus 316 ~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 395 (506)
T PRK13549 316 WEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVK 395 (506)
T ss_pred CCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCcc
Confidence 47999999987542 12345689999995 4678899999998753211110 012334456789999999996
Q ss_pred -ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHH
Q 000860 788 -SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIF 866 (1250)
Q Consensus 788 -~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 866 (1250)
+..++.+++ |||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.
T Consensus 396 ~~~~~~~~~~-----LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~ 469 (506)
T PRK13549 396 TASPELAIAR-----LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVL 469 (506)
T ss_pred CCCccccccc-----CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHH
Confidence 567777764 9999999999999999999999999999999999999999999999888999999999985 577
Q ss_pred HhhcceeeeecCcEEEEeCCCCc
Q 000860 867 EAFDELLLMKRGGRVIYGGKLGV 889 (1250)
Q Consensus 867 ~~~d~v~~l~~gg~~~~~g~~~~ 889 (1250)
+.||++++|.+ |+++..|+.+.
T Consensus 470 ~~~d~v~~l~~-G~i~~~~~~~~ 491 (506)
T PRK13549 470 GLSDRVLVMHE-GKLKGDLINHN 491 (506)
T ss_pred HhCCEEEEEEC-CEEEEEecccc
Confidence 89999999986 78888887653
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-62 Score=607.91 Aligned_cols=226 Identities=20% Similarity=0.223 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+...... +...+.+++|+||||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 313 ~L~~~~l~~~y~~~~~~~--~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i 388 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLL--NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRI 388 (623)
T ss_pred eEEEeeeEEEEcCCCccc--cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEEC
Confidence 589999999885210000 000012469999999999999999999999999999999999876 3579999999875
Q ss_pred Cc------ccccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000860 729 EQ------STFARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHALVGSPGS 799 (1250)
Q Consensus 729 ~~------~~~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~ 799 (1250)
.. ..+++.++||+|++ .++|.+||.|++.+....+. ....++.++++.++++.+||. +..++.++
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~---- 462 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYPH---- 462 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCcc----
Confidence 42 12456799999997 58889999999987654321 112344557789999999996 56677765
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
.|||||||||+|||||+.+|++|||||||+|||..++..+++.|++++++ |.|||++||+++ .+...+|++++|.+
T Consensus 463 -~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~- 539 (623)
T PRK10261 463 -EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL- 539 (623)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 49999999999999999999999999999999999999999999999765 899999999985 57788999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|++++.|+.
T Consensus 540 G~iv~~g~~ 548 (623)
T PRK10261 540 GQIVEIGPR 548 (623)
T ss_pred CEEEEecCH
Confidence 789998886
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=603.46 Aligned_cols=443 Identities=21% Similarity=0.290 Sum_probs=333.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc----ccceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ----VQRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+|||||||||||++|+|+.+|. +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++.....
T Consensus 33 ~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (510)
T PRK09700 33 IHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTK 109 (510)
T ss_pred EEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhcccccc
Confidence 47999999999999999999999864 999999999875432 23569999999889999999999987532100
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
..... ...... +.+.+++++++.+||.+..++.+++ |||||||||+|
T Consensus 110 ~~~~~----~~~~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgG~~qrv~i 156 (510)
T PRK09700 110 KVCGV----NIIDWR------------------------EMRVRAAMMLLRVGLKVDLDEKVAN-----LSISHKQMLEI 156 (510)
T ss_pred ccccc----cccCHH------------------------HHHHHHHHHHHHcCCCCCcccchhh-----CCHHHHHHHHH
Confidence 00000 000000 0012367789999998888887765 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++ +|+...+..++|++++|++|++++.|+++++..
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiiv-sHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 157 AKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYI-SHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999999999764 7888776 466778888999999999999998887654210
Q ss_pred HHHhCCCCCCCCCCchhHHHhhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhhhhHhhccCCCCCCCCCCCcccc
Q 000860 237 FFESLGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAVPFDKSKSHPSALAT 316 (1250)
Q Consensus 237 ~f~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1250)
++..+.
T Consensus 235 --------------------------------------------~~~~~~------------------------------ 240 (510)
T PRK09700 235 --------------------------------------------DDIVRL------------------------------ 240 (510)
T ss_pred --------------------------------------------HHHHHH------------------------------
Confidence 000000
Q ss_pred cCccccHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccchhHHHHHHHHHHHHHHHHhh
Q 000860 317 TKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFS 396 (1250)
Q Consensus 317 ~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 396 (1250)
.. . .. .
T Consensus 241 ----------------------------------------------~~--~--~~-~----------------------- 246 (510)
T PRK09700 241 ----------------------------------------------MV--G--RE-L----------------------- 246 (510)
T ss_pred ----------------------------------------------hc--C--CC-c-----------------------
Confidence 00 0 00 0
Q ss_pred hHHHhhhcchhHHHhhhCCCCChhHHHHHHHHHHHhHHHHHHHHHHhhhhcccccccChhHHHHHHHHHHHHHHHHHHHH
Q 000860 397 ELPILISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLY 476 (1250)
Q Consensus 397 ~~~~~~~~~~v~~~e~~~~~y~~~~~~la~~l~~lp~~~~~~~i~~~ivy~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~ 476 (1250)
.
T Consensus 247 -------------------------------------------------------~------------------------ 247 (510)
T PRK09700 247 -------------------------------------------------------Q------------------------ 247 (510)
T ss_pred -------------------------------------------------------c------------------------
Confidence 0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhCHHHHHHHHHHHhhcCCccccccCCCccccccc
Q 000860 477 RMMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATRWMKKSAIGNNTVGY 556 (1250)
Q Consensus 477 ~~i~~~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~yisp~~y~~~a~~~~ef~~~~~~~~~~~~~~~~g~ 556 (1250)
. .+ .
T Consensus 248 --------------------------------~---------------------------~~-----~------------ 251 (510)
T PRK09700 248 --------------------------------N---------------------------RF-----N------------ 251 (510)
T ss_pred --------------------------------c---------------------------cc-----c------------
Confidence 0 00 0
Q ss_pred hhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCccccccccccchhhhccccccccccccccCCcccC
Q 000860 557 NVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKGVASQGCELKTTSSREDG 636 (1250)
Q Consensus 557 ~~l~~~~~~~~~~~~w~~~~ill~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1250)
. .. .. ... .
T Consensus 252 --------------------------------------------------~----------~~---~~-----~~~-~-- 260 (510)
T PRK09700 252 --------------------------------------------------A----------MK---EN-----VSN-L-- 260 (510)
T ss_pred --------------------------------------------------c----------cc---cc-----ccc-C--
Confidence 0 00 00 000 0
Q ss_pred CCCCcccCCCCeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCe
Q 000860 637 KKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY 716 (1250)
Q Consensus 637 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~ 716 (1250)
. .+..++++|+++.+ ..+|+|+|+++++||+++|+||||||||||+++|+|..+ +
T Consensus 261 ~--------~~~~l~~~~l~~~~---------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p 315 (510)
T PRK09700 261 A--------HETVFEVRNVTSRD---------------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--R 315 (510)
T ss_pred C--------CCcEEEEeCccccC---------------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--C
Confidence 0 01147888887532 137999999999999999999999999999999999865 3
Q ss_pred eEEEEEECCccCCc----ccccceEEEEcCC---CCCCCCCCHHHHHHHHHhcC---CCC--C-CCHHHHHHHHHHHHHH
Q 000860 717 IEGDIKISGYPKEQ----STFARISGYVEQE---DVHSPQVTIEESLWFSANLR---LPK--E-ISKDQRHEFVEEVMSL 783 (1250)
Q Consensus 717 ~~G~i~~~g~~~~~----~~~~~~~~yv~q~---~~~~~~ltv~e~l~~~~~l~---~~~--~-~~~~~~~~~v~~~l~~ 783 (1250)
.+|+|.++|.++.. ...++.+|||+|+ ..+++.+||.|++.+....+ ... . ......++.++++++.
T Consensus 316 ~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 395 (510)
T PRK09700 316 AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQREL 395 (510)
T ss_pred CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHh
Confidence 57999999987542 1234578999998 45788999999998753211 000 1 1222334567899999
Q ss_pred cCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 000860 784 VELD-SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPS 862 (1250)
Q Consensus 784 l~l~-~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 862 (1250)
+++. +..++.++. |||||||||+|||+|+.+|+||+|||||+|||+.+...+++.|++++++|+|||+++|++.
T Consensus 396 ~~l~~~~~~~~~~~-----LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~ 470 (510)
T PRK09700 396 LALKCHSVNQNITE-----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP 470 (510)
T ss_pred cCCCCCCccCcccc-----CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 9997 677887765 9999999999999999999999999999999999999999999999878999999999985
Q ss_pred HHHHHhhcceeeeecCcEEEEeCCC
Q 000860 863 IEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 863 ~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
++...||++++|.+ |+++..++.
T Consensus 471 -~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 471 -EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred -HHHhhCCEEEEEEC-CEEEEEecC
Confidence 57889999999986 688877754
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-63 Score=603.31 Aligned_cols=435 Identities=22% Similarity=0.324 Sum_probs=332.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc----ccceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ----VQRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++.....
T Consensus 32 ~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 108 (501)
T PRK10762 32 VMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVN 108 (501)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhcccccc
Confidence 47999999999999999999999865 999999998874321 24569999999989999999999988643210
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
.... ....+ .+.+++++++.+||.+..+..+++ |||||||||+|
T Consensus 109 ~~~~-------~~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~l 152 (501)
T PRK10762 109 RFGR-------IDWKK------------------------MYAEADKLLARLNLRFSSDKLVGE-----LSIGEQQMVEI 152 (501)
T ss_pred ccCc-------cCHHH------------------------HHHHHHHHHHHcCCCCCccCchhh-----CCHHHHHHHHH
Confidence 0000 00000 011356789999999888877765 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||||+.+|++|||||||+|||+.++.++.+.|+++.+ .++|+|++ +|+.+++.+++|+|++|++|+++..|+.+++..
T Consensus 153 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~-sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (501)
T PRK10762 153 AKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYI-SHRLKEIFEICDDVTVFRDGQFIAEREVADLTE 230 (501)
T ss_pred HHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCH
Confidence 9999999999999999999999999999999999865 47787776 466788889999999999999998776543210
Q ss_pred HHHhCCCCCCCCCCchhHHHhhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhhhhHhhccCCCCCCCCCCCcccc
Q 000860 237 FFESLGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAVPFDKSKSHPSALAT 316 (1250)
Q Consensus 237 ~f~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1250)
++..+.
T Consensus 231 --------------------------------------------~~~~~~------------------------------ 236 (501)
T PRK10762 231 --------------------------------------------DSLIEM------------------------------ 236 (501)
T ss_pred --------------------------------------------HHHHHH------------------------------
Confidence 000000
Q ss_pred cCccccHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccchhHHHHHHHHHHHHHHHHhh
Q 000860 317 TKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFS 396 (1250)
Q Consensus 317 ~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 396 (1250)
+. . ..
T Consensus 237 ----------------------------------------------~~--~--~~------------------------- 241 (501)
T PRK10762 237 ----------------------------------------------MV--G--RK------------------------- 241 (501)
T ss_pred ----------------------------------------------hc--C--CC-------------------------
Confidence 00 0 00
Q ss_pred hHHHhhhcchhHHHhhhCCCCChhHHHHHHHHHHHhHHHHHHHHHHhhhhcccccccChhHHHHHHHHHHHHHHHHHHHH
Q 000860 397 ELPILISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLY 476 (1250)
Q Consensus 397 ~~~~~~~~~~v~~~e~~~~~y~~~~~~la~~l~~lp~~~~~~~i~~~ivy~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~ 476 (1250)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T PRK10762 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhCHHHHHHHHHHHhhcCCccccccCCCccccccc
Q 000860 477 RMMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATRWMKKSAIGNNTVGY 556 (1250)
Q Consensus 477 ~~i~~~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~yisp~~y~~~a~~~~ef~~~~~~~~~~~~~~~~g~ 556 (1250)
.
T Consensus 242 ------------------------------------~------------------------------------------- 242 (501)
T PRK10762 242 ------------------------------------L------------------------------------------- 242 (501)
T ss_pred ------------------------------------c-------------------------------------------
Confidence 0
Q ss_pred hhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCccccccccccchhhhccccccccccccccCCcccC
Q 000860 557 NVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKGVASQGCELKTTSSREDG 636 (1250)
Q Consensus 557 ~~l~~~~~~~~~~~~w~~~~ill~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1250)
.. . . ... +..
T Consensus 243 -------------------------------------------~~-----~--------~------~~~------~~~-- 252 (501)
T PRK10762 243 -------------------------------------------ED-----Q--------Y------PRL------DKA-- 252 (501)
T ss_pred -------------------------------------------cc-----c--------c------ccc------ccC--
Confidence 00 0 0 000 000
Q ss_pred CCCCcccCCCCeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCe
Q 000860 637 KKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY 716 (1250)
Q Consensus 637 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~ 716 (1250)
. .+..++++|++. ++|+|+|+++++||+++|+||||||||||+++|+|..+ +
T Consensus 253 ~--------~~~~l~~~~l~~------------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p 304 (501)
T PRK10762 253 P--------GEVRLKVDNLSG------------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--R 304 (501)
T ss_pred C--------CCcEEEEeCccc------------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--C
Confidence 0 001366777652 26999999999999999999999999999999999875 3
Q ss_pred eEEEEEECCccCCcc----cccceEEEEcCCC---CCCCCCCHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHHcCC
Q 000860 717 IEGDIKISGYPKEQS----TFARISGYVEQED---VHSPQVTIEESLWFSANLRLP---KEISKDQRHEFVEEVMSLVEL 786 (1250)
Q Consensus 717 ~~G~i~~~g~~~~~~----~~~~~~~yv~q~~---~~~~~ltv~e~l~~~~~l~~~---~~~~~~~~~~~v~~~l~~l~l 786 (1250)
.+|+|.++|.++... ..++.+|||+|++ .+++.+||.|++.+....... ...+.++.+++++++++.+++
T Consensus 305 ~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 384 (501)
T PRK10762 305 TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNI 384 (501)
T ss_pred CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCC
Confidence 579999999875421 2345699999996 577889999999875311100 012233445678899999999
Q ss_pred c-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHH
Q 000860 787 D-SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEI 865 (1250)
Q Consensus 787 ~-~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~ 865 (1250)
. +..++.++. ||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++
T Consensus 385 ~~~~~~~~~~~-----LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~ 458 (501)
T PRK10762 385 KTPSMEQAIGL-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EV 458 (501)
T ss_pred CCCCccCchhh-----CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH
Confidence 5 567777764 9999999999999999999999999999999999999999999999878999999999985 57
Q ss_pred HHhhcceeeeecCcEEEEeCCCCc
Q 000860 866 FEAFDELLLMKRGGRVIYGGKLGV 889 (1250)
Q Consensus 866 ~~~~d~v~~l~~gg~~~~~g~~~~ 889 (1250)
...+|++++|++ |+++..|+.+.
T Consensus 459 ~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 459 LGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred HhhCCEEEEEEC-CEEEEEecccc
Confidence 889999999985 78888887643
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-62 Score=599.62 Aligned_cols=218 Identities=23% Similarity=0.344 Sum_probs=177.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEEC-Ccc
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKIS-GYP 727 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~-g~~ 727 (1250)
.++++|+++.++... .+++++|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.+
T Consensus 279 ~l~~~~l~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~ 348 (520)
T TIGR03269 279 IIKVRNVSKRYISVD--------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDE 348 (520)
T ss_pred eEEEeccEEEeccCC--------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCc
Confidence 478899998774210 013469999999999999999999999999999999999875 357999996 532
Q ss_pred ---CCc------ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-----ccccc
Q 000860 728 ---KEQ------STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-----LRHAL 793 (1250)
Q Consensus 728 ---~~~------~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-----~~~~~ 793 (1250)
... ...++.+||++|++.+++.+||.|++.+...+. .+.++.+++++++++.++|.+ ..++.
T Consensus 349 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 424 (520)
T TIGR03269 349 WVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY 424 (520)
T ss_pred cccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC
Confidence 111 123456999999998899999999998764322 223334567889999999975 35666
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcce
Q 000860 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDEL 872 (1250)
Q Consensus 794 v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 872 (1250)
++ .|||||||||+|||||+.+|++|+|||||+|||+.+...+++.|++++++ |.|||+++|++. .+...+|++
T Consensus 425 ~~-----~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i 498 (520)
T TIGR03269 425 PD-----ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRA 498 (520)
T ss_pred hh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEE
Confidence 64 49999999999999999999999999999999999999999999999764 899999999985 577889999
Q ss_pred eeeecCcEEEEeCCC
Q 000860 873 LLMKRGGRVIYGGKL 887 (1250)
Q Consensus 873 ~~l~~gg~~~~~g~~ 887 (1250)
++|.+ |+++..|++
T Consensus 499 ~~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 499 ALMRD-GKIVKIGDP 512 (520)
T ss_pred EEEEC-CEEEEECCH
Confidence 99985 788888875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-62 Score=598.89 Aligned_cols=226 Identities=24% Similarity=0.327 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+..... .+...+.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ .+|+|.++|.++
T Consensus 275 ~l~~~~l~~~~~~~~~~--~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i 349 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGI--LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPL 349 (529)
T ss_pred cccccCcEEEeecCccc--cccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEc
Confidence 36788888877421000 0000013469999999999999999999999999999999999763 479999999875
Q ss_pred Ccc------cccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000860 729 EQS------TFARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHALVGSPGS 799 (1250)
Q Consensus 729 ~~~------~~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~ 799 (1250)
... .+++.++|++|++ .+++.+||+|++.+....+.. ..+..+.+++++++++.++|. +..++.++.
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 425 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYPAE--- 425 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCCcc---
Confidence 321 1345689999996 477889999999886543211 123344556788999999997 466776654
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++...+|++++|++
T Consensus 426 --LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~- 501 (529)
T PRK15134 426 --FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ- 501 (529)
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-
Confidence 9999999999999999999999999999999999999999999999765 899999999985 57788999999986
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 502 G~i~~~~~~ 510 (529)
T PRK15134 502 GEVVEQGDC 510 (529)
T ss_pred CEEEEEcCH
Confidence 788888875
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-61 Score=649.71 Aligned_cols=210 Identities=20% Similarity=0.260 Sum_probs=177.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++|+|++++|+.. ..++|+|||++|+|||++||+||||||||||+++|.|..+ +.+|+|.+||.++
T Consensus 1284 ~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI 1350 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNI 1350 (1522)
T ss_pred cEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEc
Confidence 69999999998531 2369999999999999999999999999999999999876 4579999999987
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~v~~~~ 798 (1250)
++ ..+|++++|||||+.+|+. |+||||... ...++++ +.++++..++.+ -.|+.+|+.+
T Consensus 1351 ~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~------~~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~G 1419 (1522)
T TIGR00957 1351 AKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPF------SQYSDEE----VWWALELAHLKTFVSALPDKLDHECAEGG 1419 (1522)
T ss_pred cccCHHHHHhcCeEECCCCcccCc-cHHHHcCcc------cCCCHHH----HHHHHHHcCcHHHHhhCccCCCceecCCC
Confidence 64 4678899999999999975 999998521 1234433 556666666643 3567777633
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
.+||||||||++|||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1420 -~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~- 1494 (1522)
T TIGR00957 1420 -ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK- 1494 (1522)
T ss_pred -CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 4699999999999999999999999999999999999999999999875 5899999999974 6778999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|++
T Consensus 1495 G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 GEVAEFGAP 1503 (1522)
T ss_pred CEEEEECCH
Confidence 899999986
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-62 Score=595.71 Aligned_cols=438 Identities=21% Similarity=0.291 Sum_probs=329.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc----ccceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ----VQRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+|||||||||||++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 39 ~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-- 113 (510)
T PRK15439 39 VHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-- 113 (510)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc--
Confidence 47999999999999999999999865 999999998875322 124699999999999999999999875210
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
. . .. +++++++++.+||.+..+..+++ |||||||||+|
T Consensus 114 ---~-----~---~~--------------------------~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~l 151 (510)
T PRK15439 114 ---R-----Q---AS--------------------------MQKMKQLLAALGCQLDLDSSAGS-----LEVADRQIVEI 151 (510)
T ss_pred ---c-----h---HH--------------------------HHHHHHHHHHcCCCccccCChhh-----CCHHHHHHHHH
Confidence 0 0 00 01256789999998877877765 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|+|++ +|+..++.++||+|++|++|++++.|+++++.+
T Consensus 152 a~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiv-tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 152 LRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFI-SHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999999999999999875 47888776 456777888999999999999999988766421
Q ss_pred HHHhCCCCCCCCCCchhHHHhhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhhhhHhhccCCCCCCCCCCCcccc
Q 000860 237 FFESLGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAVPFDKSKSHPSALAT 316 (1250)
Q Consensus 237 ~f~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (1250)
. + ..+.+.. .. .
T Consensus 230 ~---------------~-----------------------------~~~~~~~------------~~--~---------- 241 (510)
T PRK15439 230 D---------------D-----------------------------IIQAITP------------AA--R---------- 241 (510)
T ss_pred H---------------H-----------------------------HHHHHhC------------cc--c----------
Confidence 0 0 0000000 00 0
Q ss_pred cCccccHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccchhHHHHHHHHHHHHHHHHhh
Q 000860 317 TKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCFS 396 (1250)
Q Consensus 317 ~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 396 (1250)
.......
T Consensus 242 --------------------------------------------------~~~~~~~----------------------- 248 (510)
T PRK15439 242 --------------------------------------------------EKSLSAS----------------------- 248 (510)
T ss_pred --------------------------------------------------ccccccc-----------------------
Confidence 0000000
Q ss_pred hHHHhhhcchhHHHhhhCCCCChhHHHHHHHHHHHhHHHHHHHHHHhhhhcccccccChhHHHHHHHHHHHHHHHHHHHH
Q 000860 397 ELPILISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGLY 476 (1250)
Q Consensus 397 ~~~~~~~~~~v~~~e~~~~~y~~~~~~la~~l~~lp~~~~~~~i~~~ivy~~~gl~~~~~~f~~~~~~~~~~~~~~~~l~ 476 (1250)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK15439 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhCHHHHHHHHHHHhhcCCccccccCCCccccccc
Q 000860 477 RMMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATRWMKKSAIGNNTVGY 556 (1250)
Q Consensus 477 ~~i~~~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~yisp~~y~~~a~~~~ef~~~~~~~~~~~~~~~~g~ 556 (1250)
...
T Consensus 249 -------------------------------------~~~---------------------------------------- 251 (510)
T PRK15439 249 -------------------------------------QKL---------------------------------------- 251 (510)
T ss_pred -------------------------------------ccc----------------------------------------
Confidence 000
Q ss_pred hhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCccccccccccchhhhccccccccccccccCCcccC
Q 000860 557 NVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKGVASQGCELKTTSSREDG 636 (1250)
Q Consensus 557 ~~l~~~~~~~~~~~~w~~~~ill~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1250)
+ . . . .. .+.. .
T Consensus 252 ---------------~--------------------------~-------~----------~----~~------~~~~-~ 262 (510)
T PRK15439 252 ---------------W--------------------------L-------E----------L----PG------NRRQ-Q 262 (510)
T ss_pred ---------------c--------------------------c-------c----------c----cc------cccc-c
Confidence 0 0 0 0 00 0000 0
Q ss_pred CCCCcccCCCCeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCe
Q 000860 637 KKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY 716 (1250)
Q Consensus 637 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~ 716 (1250)
+ . .+..++++|++. .+|+|+|+++++||++||+||||||||||+++|+|..+ +
T Consensus 263 ~-~------~~~~l~~~~l~~------------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p 315 (510)
T PRK15439 263 A-A------GAPVLTVEDLTG------------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--A 315 (510)
T ss_pred C-C------CCceEEEeCCCC------------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--C
Confidence 0 0 011467777762 14899999999999999999999999999999999865 3
Q ss_pred eEEEEEECCccCCcc----cccceEEEEcCCC---CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-c
Q 000860 717 IEGDIKISGYPKEQS----TFARISGYVEQED---VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-S 788 (1250)
Q Consensus 717 ~~G~i~~~g~~~~~~----~~~~~~~yv~q~~---~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~ 788 (1250)
.+|+|.++|.++... ..++.++|++|++ .+++.+|+.|++........+........++.++++++.+++. +
T Consensus 316 ~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 395 (510)
T PRK15439 316 RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFN 395 (510)
T ss_pred CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCC
Confidence 479999999875431 1245689999984 4788899999986421111111111223345688999999997 6
Q ss_pred cccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHh
Q 000860 789 LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEA 868 (1250)
Q Consensus 789 ~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~ 868 (1250)
..++.++. ||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|++++++|.|||+++|++. ++.+.
T Consensus 396 ~~~~~~~~-----LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~ 469 (510)
T PRK15439 396 HAEQAART-----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQM 469 (510)
T ss_pred CccCcccc-----CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHh
Confidence 77777754 9999999999999999999999999999999999999999999999878999999999985 67889
Q ss_pred hcceeeeecCcEEEEeCCCC
Q 000860 869 FDELLLMKRGGRVIYGGKLG 888 (1250)
Q Consensus 869 ~d~v~~l~~gg~~~~~g~~~ 888 (1250)
||++++|.+ |+++..|..+
T Consensus 470 ~d~i~~l~~-G~i~~~~~~~ 488 (510)
T PRK15439 470 ADRVLVMHQ-GEISGALTGA 488 (510)
T ss_pred CCEEEEEEC-CEEEEEEccc
Confidence 999999985 7888887764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-62 Score=594.78 Aligned_cols=221 Identities=19% Similarity=0.313 Sum_probs=179.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.+... +++.+|+|+||++++||+++|+|||||||||||++|+|..++ +.+|+|.++|.++
T Consensus 257 ~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~ 325 (500)
T TIGR02633 257 ILEARNLTCWDVIN----------PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPV 325 (500)
T ss_pred eEEEeCCccccccc----------ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEEC
Confidence 47888888654210 123589999999999999999999999999999999998652 1479999999876
Q ss_pred Cc----ccccceEEEEcCCC---CCCCCCCHHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCC
Q 000860 729 EQ----STFARISGYVEQED---VHSPQVTIEESLWFSAN--LRLPKEISKDQRHEFVEEVMSLVELDS-LRHALVGSPG 798 (1250)
Q Consensus 729 ~~----~~~~~~~~yv~q~~---~~~~~ltv~e~l~~~~~--l~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~v~~~~ 798 (1250)
.. ...++.+||++|+. .+++.+||+|++.+... ..........+.+++++++++.+++.+ ..++.++.
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 403 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGR-- 403 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcccc--
Confidence 42 12356789999995 57889999999987532 110001223344567889999999974 56777754
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++. ++.+.+|++++|.+
T Consensus 404 ---LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~- 478 (500)
T TIGR02633 404 ---LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE- 478 (500)
T ss_pred ---CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999999999999999999999999999999999999888999999999985 57789999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..++.
T Consensus 479 G~i~~~~~~ 487 (500)
T TIGR02633 479 GKLKGDFVN 487 (500)
T ss_pred CEEEEEEcc
Confidence 788877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-61 Score=585.99 Aligned_cols=205 Identities=20% Similarity=0.289 Sum_probs=171.2
Q ss_pred ceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc----ccccceEEEEcCCC---CCCC
Q 000860 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ----STFARISGYVEQED---VHSP 748 (1250)
Q Consensus 676 ~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~yv~q~~---~~~~ 748 (1250)
.+++|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 37999999999999999999999999999999999875 357999999987532 12345789999996 4788
Q ss_pred CCCHHHHHHHHHhcCC-CCC--CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEE
Q 000860 749 QVTIEESLWFSANLRL-PKE--ISKDQRHEFVEEVMSLVELD-SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIF 824 (1250)
Q Consensus 749 ~ltv~e~l~~~~~l~~-~~~--~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~ 824 (1250)
.+||.|++.+...... +.. ......++.++++++.+++. +..++.++. |||||||||+||++|+.+|++|+
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMN-----LSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcccc-----CCHHHHHHHHHHHHHccCCCEEE
Confidence 9999999987532110 001 12233345688999999994 677888765 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCCCc
Q 000860 825 MDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGV 889 (1250)
Q Consensus 825 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 889 (1250)
|||||+|||+.+...+++.|++++++|.|||+++||+. ++.+.+|++++|.+ |++++.|+.+.
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 482 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQ 482 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 99999999999999999999999888999999999985 57889999999985 78888887754
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-60 Score=635.97 Aligned_cols=211 Identities=22% Similarity=0.268 Sum_probs=178.0
Q ss_pred eeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCcc
Q 000860 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 727 (1250)
Q Consensus 648 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 727 (1250)
..++|+||+++|+. +.+.+|+||||+|+|||++||+|+||||||||+++|.|..+ +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 36999999999853 22459999999999999999999999999999999999876 457999999998
Q ss_pred CCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000860 728 KEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSP 797 (1250)
Q Consensus 728 ~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~v~~~ 797 (1250)
+.. ..+|+.++|||||+.+|.. ||+|||... ...+++ .+.++++..++.+ -.|+.+|+.
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~sde----eI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEASSA----EVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCCHH----HHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 4678899999999999865 999999421 133433 3667777777654 357777763
Q ss_pred CCCcCCHHHHHHHHHHHHHhhC-CcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 798 GSFGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 798 ~~~~lSgGerqr~~ia~~l~~~-p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
+ .+||||||||++|||||+++ |+||+||||||+||+++...|++.|++.. +++|||+++|++ +....||+|++|+
T Consensus 1443 G-~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 G-SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKIIVMD 1518 (1560)
T ss_pred c-CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEEEEE
Confidence 3 47999999999999999995 89999999999999999999999999864 489999999997 4678899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |+++..|+.
T Consensus 1519 ~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 H-GAVAEMGSP 1528 (1560)
T ss_pred C-CEEEEECCH
Confidence 5 899999986
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-60 Score=579.04 Aligned_cols=435 Identities=19% Similarity=0.269 Sum_probs=327.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc----cccceEEeeccccccCCCCCHHHHHHHHHHc-c
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF----QVQRASAYIGQTDNHIAELTVRETLDFAARC-Q 75 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~----~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~-~ 75 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|+++... ..++.++|++|++.+++.+||+||+.++... .
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 102 (491)
T PRK10982 26 IHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTK 102 (491)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHHhhccccccc
Confidence 47999999999999999999999864 99999999987532 1246799999998888999999999875311 1
Q ss_pred CCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhH
Q 000860 76 GANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVT 155 (1250)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ 155 (1250)
+.... ..+ ...+++++++.+|+.+..++.+++ |||||||||+
T Consensus 103 ~~~~~---------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~ 144 (491)
T PRK10982 103 GMFVD---------QDK------------------------MYRDTKAIFDELDIDIDPRAKVAT-----LSVSQMQMIE 144 (491)
T ss_pred ccccC---------HHH------------------------HHHHHHHHHHHcCCCCCccCchhh-----CCHHHHHHHH
Confidence 00000 000 001356789999998777777654 9999999999
Q ss_pred HHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 156 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 156 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ .++|+|++ +|+.+++.+.||++++|++|+++..|++++..
T Consensus 145 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~-tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 145 IAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYI-SHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-ecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 99999999999999999999999999999999999865 47888776 45677888899999999999999877654320
Q ss_pred HHHHhCCCCCCCCCCchhHHHhhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhhhhHhhccCCCCCCCCCCCccc
Q 000860 236 EFFESLGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAVPFDKSKSHPSALA 315 (1250)
Q Consensus 236 ~~f~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (1250)
. ++..+.
T Consensus 223 ~--------------------------------------------~~~~~~----------------------------- 229 (491)
T PRK10982 223 M--------------------------------------------DKIIAM----------------------------- 229 (491)
T ss_pred H--------------------------------------------HHHHHH-----------------------------
Confidence 0 000000
Q ss_pred ccCccccHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccchhHHHHHHHHHHHHHHHHh
Q 000860 316 TTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCF 395 (1250)
Q Consensus 316 ~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 395 (1250)
+. . ..
T Consensus 230 -----------------------------------------------~~--~--~~------------------------ 234 (491)
T PRK10982 230 -----------------------------------------------MV--G--RS------------------------ 234 (491)
T ss_pred -----------------------------------------------Hh--C--CC------------------------
Confidence 00 0 00
Q ss_pred hhHHHhhhcchhHHHhhhCCCCChhHHHHHHHHHHHhHHHHHHHHHHhhhhcccccccChhHHHHHHHHHHHHHHHHHHH
Q 000860 396 SELPILISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGL 475 (1250)
Q Consensus 396 ~~~~~~~~~~~v~~~e~~~~~y~~~~~~la~~l~~lp~~~~~~~i~~~ivy~~~gl~~~~~~f~~~~~~~~~~~~~~~~l 475 (1250)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhCHHHHHHHHHHHhhcCCccccccCCCcccccc
Q 000860 476 YRMMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATRWMKKSAIGNNTVG 555 (1250)
Q Consensus 476 ~~~i~~~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~yisp~~y~~~a~~~~ef~~~~~~~~~~~~~~~~g 555 (1250)
.
T Consensus 235 -------------------------------------~------------------------------------------ 235 (491)
T PRK10982 235 -------------------------------------L------------------------------------------ 235 (491)
T ss_pred -------------------------------------c------------------------------------------
Confidence 0
Q ss_pred chhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCccccccccccchhhhccccccccccccccCCccc
Q 000860 556 YNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKGVASQGCELKTTSSRED 635 (1250)
Q Consensus 556 ~~~l~~~~~~~~~~~~w~~~~ill~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1250)
.. . . .. . . .
T Consensus 236 --------------------------------------------~~-----~--------~------~~-----~-~-~- 244 (491)
T PRK10982 236 --------------------------------------------TQ-----R--------F------PD-----K-E-N- 244 (491)
T ss_pred --------------------------------------------cc-----c--------c------cc-----c-c-C-
Confidence 00 0 0 00 0 0 0
Q ss_pred CCCCCcccCCCCeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 000860 636 GKKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG 715 (1250)
Q Consensus 636 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~ 715 (1250)
.. .+..++++|+++.. +++|+|+|+++++||+++|+||||||||||+++|+|..+
T Consensus 245 ~~--------~~~~i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-- 299 (491)
T PRK10982 245 KP--------GEVILEVRNLTSLR---------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-- 299 (491)
T ss_pred CC--------CCcEEEEeCccccc---------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--
Confidence 00 01147888887641 248999999999999999999999999999999999876
Q ss_pred eeEEEEEECCccCCcc----cccceEEEEcCCC---CCCCCCCHHHHHHHHH--hcCCCCC-CCHHHHHHHHHHHHHHcC
Q 000860 716 YIEGDIKISGYPKEQS----TFARISGYVEQED---VHSPQVTIEESLWFSA--NLRLPKE-ISKDQRHEFVEEVMSLVE 785 (1250)
Q Consensus 716 ~~~G~i~~~g~~~~~~----~~~~~~~yv~q~~---~~~~~ltv~e~l~~~~--~l~~~~~-~~~~~~~~~v~~~l~~l~ 785 (1250)
+.+|+|.++|.++... ..++.++|++|++ .+++.+|+.++..+.. ....... .+....++.++++++.++
T Consensus 300 p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (491)
T PRK10982 300 KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMR 379 (491)
T ss_pred CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcC
Confidence 3579999999876431 1245689999985 3678888887742221 0000001 122344567888999999
Q ss_pred Cc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHH
Q 000860 786 LD-SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIE 864 (1250)
Q Consensus 786 l~-~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~ 864 (1250)
+. +..++.++. ||||||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.++|+|||++||+++ +
T Consensus 380 l~~~~~~~~~~~-----LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~ 453 (491)
T PRK10982 380 VKTPGHRTQIGS-----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-E 453 (491)
T ss_pred ccCCCccccccc-----CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-H
Confidence 95 456777654 9999999999999999999999999999999999999999999999888999999999985 5
Q ss_pred HHHhhcceeeeecCcEEEEeCCCC
Q 000860 865 IFEAFDELLLMKRGGRVIYGGKLG 888 (1250)
Q Consensus 865 ~~~~~d~v~~l~~gg~~~~~g~~~ 888 (1250)
+...+|++++|.+ |+++..++.+
T Consensus 454 ~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 454 LLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred HHhhCCEEEEEEC-CEEEEEEccc
Confidence 7789999999986 7887766543
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-58 Score=619.63 Aligned_cols=209 Identities=22% Similarity=0.315 Sum_probs=177.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++|+||+++|+. +.+.+|+|||++|+|||++||+|+||||||||+++|.|..+ .+|+|.+||.++
T Consensus 1217 ~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di 1282 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSW 1282 (1490)
T ss_pred eEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEc
Confidence 6999999999853 23569999999999999999999999999999999999864 479999999987
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~v~~~~ 798 (1250)
+. ..+|+.++||||++.+|+. ||||||... ...++ +.+.++++..+|.+ -.|+.+++ +
T Consensus 1283 ~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~------~~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e-~ 1350 (1490)
T TIGR01271 1283 NSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPY------EQWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVD-G 1350 (1490)
T ss_pred ccCCHHHHHhceEEEeCCCccCcc-CHHHHhCcc------cCCCH----HHHHHHHHHCCCHHHHHhCcccccccccc-C
Confidence 64 4578899999999999975 999999432 12333 34667777777643 35677775 3
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
+.+||||||||++|||||+++|+||+||||||+||..+...|++.|++.. +++|||+++|++ +....||+|++|++
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl--~ti~~~DrIlvL~~- 1426 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRV--EALLECQQFLVIEG- 1426 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH--HHHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999875 479999999997 46778999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|++
T Consensus 1427 G~ivE~g~p 1435 (1490)
T TIGR01271 1427 SSVKQYDSI 1435 (1490)
T ss_pred CEEEEeCCH
Confidence 789888886
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-59 Score=571.82 Aligned_cols=214 Identities=21% Similarity=0.326 Sum_probs=168.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ ..+|+|.++|.+.
T Consensus 260 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~ 325 (490)
T PRK10938 260 RIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRR 325 (490)
T ss_pred eEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccC
Confidence 489999998773 23589999999999999999999999999999999996531 1479999999764
Q ss_pred Cc----ccccceEEEEcCCCCCCC--CCCHHHHHHHHHh--cCCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000860 729 EQ----STFARISGYVEQEDVHSP--QVTIEESLWFSAN--LRLPKEISKDQRHEFVEEVMSLVELDS-LRHALVGSPGS 799 (1250)
Q Consensus 729 ~~----~~~~~~~~yv~q~~~~~~--~ltv~e~l~~~~~--l~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~v~~~~~ 799 (1250)
.. ...++.+||++|++.+++ ..|+++++.+... ........ .+.+++++++++.++|.+ ..++.++.
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 401 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFHS--- 401 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchhh---
Confidence 22 123567999999876543 3577776654321 01111111 233457889999999987 77777754
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCC-EEEEEecCCCHHHHH-hhcceeeeec
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGR-TVVCTIHQPSIEIFE-AFDELLLMKR 877 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~-tvi~~~H~~~~~~~~-~~d~v~~l~~ 877 (1250)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|. |||+++|++. ++.+ .+|++++|.+
T Consensus 402 --LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~ 478 (490)
T PRK10938 402 --LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD 478 (490)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC
Confidence 999999999999999999999999999999999999999999999987764 6999999985 4555 5899999986
Q ss_pred CcEEEEe
Q 000860 878 GGRVIYG 884 (1250)
Q Consensus 878 gg~~~~~ 884 (1250)
|++++.
T Consensus 479 -G~i~~~ 484 (490)
T PRK10938 479 -GDIYRY 484 (490)
T ss_pred -CceEEe
Confidence 565554
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-58 Score=497.62 Aligned_cols=452 Identities=23% Similarity=0.325 Sum_probs=350.0
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCeecC---ccccc----ceEEeecccc--ccCCCCCHHHHHHH
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGN--LNKSGSITYNGWELD---EFQVQ----RASAYIGQTD--NHIAELTVRETLDF 70 (1250)
Q Consensus 2 ~~ivGp~GsGKSTLl~~l~G~~~~~--~~~~G~v~~~g~~~~---~~~~~----~~~~yv~Q~~--~~~~~~TV~e~l~f 70 (1250)
+||||.||||||-..+.++|+++.. ...+|+|.++|.++- +...+ ..|+.++|++ .+-|-.|+...|.-
T Consensus 39 lAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E 118 (534)
T COG4172 39 LALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAE 118 (534)
T ss_pred EEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHH
Confidence 6999999999999999999999752 345899999999873 22222 3589999997 67777788888876
Q ss_pred HHHccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCcccc
Q 000860 71 AARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQ 150 (1250)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 150 (1250)
..+++..-.. .+.+.++-++|+..|+++-.... +.+..+|||||
T Consensus 119 ~l~~Hrg~~~----------------------------------~~Ar~r~lelL~~VgI~~p~~rl--~~yPHeLSGGq 162 (534)
T COG4172 119 VLRLHRGLSR----------------------------------AAARARALELLELVGIPEPEKRL--DAYPHELSGGQ 162 (534)
T ss_pred HHHHHhcccH----------------------------------HHHHHHHHHHHHHcCCCchhhhh--hhCCcccCcch
Confidence 6655421110 11123466788888987643322 24567899999
Q ss_pred chhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecC
Q 000860 151 KKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGP 230 (1250)
Q Consensus 151 kqRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~ 230 (1250)
||||.||+||+.+|++||-||||++||...+.+|++.|+++.++.|..++++ +|+..-+-+++|||+||.+|+++++|+
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfI-THDL~iVr~~ADrV~VM~~G~ivE~~~ 241 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFI-THDLGIVRKFADRVYVMQHGEIVETGT 241 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEE-eccHHHHHHhhhhEEEEeccEEeecCc
Confidence 9999999999999999999999999999999999999999998889888876 567787888999999999999999999
Q ss_pred hhhHHHHHHhCCCCCCCCCCchhHHHhhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhhhhHhhccCCCCCCCCC
Q 000860 231 RAEVLEFFESLGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAVPFDKSKSH 310 (1250)
Q Consensus 231 ~~~~~~~f~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 310 (1250)
.+++.. .|.+. |
T Consensus 242 t~~lF~--------~PqHp-----------------Y------------------------------------------- 253 (534)
T COG4172 242 TETLFA--------APQHP-----------------Y------------------------------------------- 253 (534)
T ss_pred HHHHhh--------CCCCh-----------------H-------------------------------------------
Confidence 877632 11100 0
Q ss_pred CCcccccCccccHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccchhHHHHHHHHHHHH
Q 000860 311 PSALATTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCHFFGMVHM 390 (1250)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~ 390 (1250)
. |..+ +.
T Consensus 254 --------------------T-r~Ll------------------------------~a---------------------- 260 (534)
T COG4172 254 --------------------T-RKLL------------------------------AA---------------------- 260 (534)
T ss_pred --------------------H-HHHH------------------------------hc----------------------
Confidence 0 0000 00
Q ss_pred HHHHhhhHHHhhhcchhHHHhhhCCCCChhHHHHHHHHHHHhHHHHHHHHHHhhhhcccccccChhHHHHHHHHHHHHHH
Q 000860 391 MFNCFSELPILISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQ 470 (1250)
Q Consensus 391 ~~~~~~~~~~~~~~~~v~~~e~~~~~y~~~~~~la~~l~~lp~~~~~~~i~~~ivy~~~gl~~~~~~f~~~~~~~~~~~~ 470 (1250)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhCHHHHHHHHHHHhhcCCccccccCCCc
Q 000860 471 MALGLYRMMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATRWMKKSAIG 550 (1250)
Q Consensus 471 ~~~~l~~~i~~~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~yisp~~y~~~a~~~~ef~~~~~~~~~~~~ 550 (1250)
T Consensus 261 -------------------------------------------------------------------------------- 260 (534)
T COG4172 261 -------------------------------------------------------------------------------- 260 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccchhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCccccccccccchhhhcccccccccccccc
Q 000860 551 NNTVGYNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKGVASQGCELKTT 630 (1250)
Q Consensus 551 ~~~~g~~~l~~~~~~~~~~~~w~~~~ill~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1250)
+. .
T Consensus 261 -------------------------------------------------eP----------------------------~ 263 (534)
T COG4172 261 -------------------------------------------------EP----------------------------S 263 (534)
T ss_pred -------------------------------------------------CC----------------------------C
Confidence 00 0
Q ss_pred CCcccCCCCCcccCCCCeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhC
Q 000860 631 SSREDGKKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g 710 (1250)
..+.+.+ +..++.++.+|+...++.+..+-.. ......++++||+++++||.++|+|.||||||||=.+|.+
T Consensus 264 g~~~p~~------~~~~~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allr 335 (534)
T COG4172 264 GDPPPLP------EDAPVLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLR 335 (534)
T ss_pred CCCCCCC------CCCCceEEecceEEEEecCCccccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHh
Confidence 0000000 0112357777877777665432211 1234568999999999999999999999999999999998
Q ss_pred CCCCCeeEEEEEECCccCCc------ccccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Q 000860 711 RKTGGYIEGDIKISGYPKEQ------STFARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMS 782 (1250)
Q Consensus 711 ~~~~~~~~G~i~~~g~~~~~------~~~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~ 782 (1250)
..++ +|+|.++|.++.. ..+|+.+-.|+||| .+.|.+||.|.+.-+....-| ..+.+++.+++.++++
T Consensus 336 L~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~ 411 (534)
T COG4172 336 LIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALE 411 (534)
T ss_pred hcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHH
Confidence 7753 5999999998753 24577888999998 478999999999888776654 4678899999999999
Q ss_pred HcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecC
Q 000860 783 LVELDSL-RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQ 860 (1250)
Q Consensus 783 ~l~l~~~-~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~ 860 (1250)
..||+.. .++.. ..+|||||||++|||||+.+|++++||||||+||..-+.+|+++|+++.+ .|.+-++++||
T Consensus 412 EVGLDp~~r~RYP-----hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHD 486 (534)
T COG4172 412 EVGLDPATRNRYP-----HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD 486 (534)
T ss_pred HcCCChhHhhcCC-----cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEecc
Confidence 9999763 34433 35999999999999999999999999999999999999999999999864 48999999999
Q ss_pred CCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 861 PSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 861 ~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
.. -+-.+||+|+||.+ |++++.|+.
T Consensus 487 L~-VvrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 487 LA-VVRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred HH-HHHHhhceEEEEeC-CEEeeeCCH
Confidence 75 47789999999985 899999996
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-57 Score=555.57 Aligned_cols=201 Identities=23% Similarity=0.328 Sum_probs=164.8
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET-- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 589999998773 2458999999999999999999999999999999999876 35799998542
Q ss_pred CcccccceEEEEcCCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHH
Q 000860 729 EQSTFARISGYVEQED-VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-LRHALVGSPGSFGLSTEQ 806 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~-~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~v~~~~~~~lSgGe 806 (1250)
..+||++|++ .+++.+||+|++.+...... .... ...++++++.+++.+ ..++.++. |||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKVGV-----LSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCchhh-----CCHHH
Confidence 1489999996 67889999999987643221 1111 123457899999964 45676654 99999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEE-EeC
Q 000860 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI-YGG 885 (1250)
Q Consensus 807 rqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g 885 (1250)
|||++||++|+.+|++|+|||||+|||+.+...+.+.|+++. | |||+++|++. .+...+|++++|.+||++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999975 5778899999998656655 455
Q ss_pred C
Q 000860 886 K 886 (1250)
Q Consensus 886 ~ 886 (1250)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-57 Score=553.39 Aligned_cols=198 Identities=20% Similarity=0.289 Sum_probs=165.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--
Confidence 589999998873 2358999999999999999999999999999999999865 35799999873
Q ss_pred CcccccceEEEEcCCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHH
Q 000860 729 EQSTFARISGYVEQEDV--HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~~--~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~~~lSgG 805 (1250)
+.+||++|++. +.+.+||+|++.+.. .. ...+++++++++.+++. +..++.++. ||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-----~~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-----GDDEQAVRGTLGRLLFSQDDIKKSVKV-----LSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-----CccHHHHHHHHHHcCCChhHhcCcccc-----cCHH
Confidence 45899999864 456799999986421 01 11234578899999994 566777754 9999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEE-Ee
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI-YG 884 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~ 884 (1250)
||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++ +.|||++||++. .+...+|++++|.+ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999876 459999999985 57778999999986 5665 77
Q ss_pred CCC
Q 000860 885 GKL 887 (1250)
Q Consensus 885 g~~ 887 (1250)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=551.82 Aligned_cols=201 Identities=22% Similarity=0.322 Sum_probs=164.6
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--
Confidence 589999998773 2469999999999999999999999999999999999865 35799998542
Q ss_pred CcccccceEEEEcCCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHH
Q 000860 729 EQSTFARISGYVEQED-VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-LRHALVGSPGSFGLSTEQ 806 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~-~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~v~~~~~~~lSgGe 806 (1250)
..+||++|++ .+++.+||.|++.+..... ..... ...++++++.+++.+ ..++.++. |||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKVGQ-----LSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCchhh-----CCHHH
Confidence 1589999996 4778899999998764321 11111 123557899999964 45776654 99999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEE-EeC
Q 000860 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI-YGG 885 (1250)
Q Consensus 807 rqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g 885 (1250)
||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++. .|||+++|++. .+...+|++++|++||++. +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999975 5777899999998656655 545
Q ss_pred C
Q 000860 886 K 886 (1250)
Q Consensus 886 ~ 886 (1250)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-55 Score=537.89 Aligned_cols=211 Identities=22% Similarity=0.275 Sum_probs=174.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++. ..|+++|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++
T Consensus 340 ~l~~~~ls~~~~~--------------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLGD--------------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEECC--------------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----
Confidence 5889999987631 24899999999999999999999999999999999876 357999885
Q ss_pred CcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000860 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerq 808 (1250)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.++|.+..++.+++ |||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~~-----LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNVKD-----LSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCccc-----CCHHHHH
Confidence 1489999998888899999999875321 111 12467899999999888888765 9999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 809 r~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++||+. .+...+|++++|+ | ++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeec
Confidence 999999999999999999999999999999999999999764 899999999975 5777899999995 4 66666654
Q ss_pred Ccc---chhHHHHhhhC
Q 000860 888 GVH---SQIMIDYFQGL 901 (1250)
Q Consensus 888 ~~~---~~~~~~yf~~~ 901 (1250)
... ...+..|++++
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 322 13456677777
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=528.72 Aligned_cols=197 Identities=22% Similarity=0.334 Sum_probs=162.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+ ++.+|+|+|++|++||++||+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 589999998873 2469999999999999999999999999999999999875 35799998641
Q ss_pred CcccccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHH
Q 000860 729 EQSTFARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-LRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~v~~~~~~~lSgG 805 (1250)
..+||++|+. .+.+..|+.+++.- .. .....+.+.++++.+++.. ..++.++. ||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~~-----LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEETRR-----FSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCchhh-----CCHH
Confidence 2589999974 34566788776531 11 1122456788999999963 56777764 9999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEE-Ee
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI-YG 884 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~ 884 (1250)
|||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++ +.|||+++||+. .+...||++++|.+ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 349999999975 57788999999986 6665 88
Q ss_pred CCC
Q 000860 885 GKL 887 (1250)
Q Consensus 885 g~~ 887 (1250)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 875
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=533.24 Aligned_cols=202 Identities=23% Similarity=0.326 Sum_probs=166.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++++|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 589999998773 2458999999999999999999999999999999999865 35799988 4321
Q ss_pred CcccccceEEEEcCCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCHHH
Q 000860 729 EQSTFARISGYVEQED-VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHALVGSPGSFGLSTEQ 806 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~-~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~~~lSgGe 806 (1250)
.+||++|+. .+++.+||.|++.+.... . ... .....+.++++.+++. +..++.++. |||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~--~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~-----LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQE-V--MVN--GRPRHVLGYLQDFLFHPKRAMTPVKA-----LSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhccc-c--ccc--chHHHHHHHHHhcCCCHHHHhChhhh-----CCHHH
Confidence 489999985 578899999999875321 0 111 1234577889999985 456777754 99999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee-cCcEEEEeC
Q 000860 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK-RGGRVIYGG 885 (1250)
Q Consensus 807 rqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-~gg~~~~~g 885 (1250)
||||+||++|+.+|++|||||||+|||..+...+.+.|+++ +.|||++||+.. .+...+|+++++. +|+...|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 459999999974 5778899999997 565566777
Q ss_pred CC
Q 000860 886 KL 887 (1250)
Q Consensus 886 ~~ 887 (1250)
+.
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 65
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=482.39 Aligned_cols=432 Identities=23% Similarity=0.342 Sum_probs=333.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc----ccceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ----VQRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+.+|+|.||||||||+|+|+|.++|+ +|+|.+||++..... .+.-|+.|.|+..+.|++||.|||.++...+.
T Consensus 36 V~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~ 112 (500)
T COG1129 36 VHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTR 112 (500)
T ss_pred EEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhccccccc
Confidence 47999999999999999999999975 999999999875333 23558999999999999999999987754332
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
... . ++.. ...+++.++|+.+|+....+++|++ ||+||||-|+|
T Consensus 113 ~~g-~------id~~------------------------~m~~~A~~~l~~lg~~~~~~~~v~~-----LsiaqrQ~VeI 156 (500)
T COG1129 113 RFG-L------IDRK------------------------AMRRRARELLARLGLDIDPDTLVGD-----LSIAQRQMVEI 156 (500)
T ss_pred CCC-c------cCHH------------------------HHHHHHHHHHHHcCCCCChhhhhhh-----CCHHHHHHHHH
Confidence 100 0 0000 0112356789999996558888887 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecCh-hhHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPR-AEVL 235 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~-~~~~ 235 (1250)
||||..+++|++||||||+|+......+++.++++.+ .|.++|.+ +|..+|+++.||||.||+||+.+..++. ++.-
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~I-SHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~ 234 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYI-SHRLDEVFEIADRITVLRDGRVVGTRPTAAETS 234 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEE-cCcHHHHHHhcCEEEEEeCCEEeeecccccCCC
Confidence 9999999999999999999999999999999999975 58888876 5689999999999999999999877653 2210
Q ss_pred HHHHhCCCCCCCCCCchhHHHhhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhhhhHhhccCCCCCCCCCCCccc
Q 000860 236 EFFESLGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAVPFDKSKSHPSALA 315 (1250)
Q Consensus 236 ~~f~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (1250)
.++..+
T Consensus 235 --------------------------------------------~~~lv~------------------------------ 240 (500)
T COG1129 235 --------------------------------------------EDELVR------------------------------ 240 (500)
T ss_pred --------------------------------------------HHHHHH------------------------------
Confidence 000000
Q ss_pred ccCccccHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccchhHHHHHHHHHHHHHHHHh
Q 000860 316 TTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCF 395 (1250)
Q Consensus 316 ~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 395 (1250)
T Consensus 241 -------------------------------------------------------------------------------- 240 (500)
T COG1129 241 -------------------------------------------------------------------------------- 240 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHhhhcchhHHHhhhCCCCChhHHHHHHHHHHHhHHHHHHHHHHhhhhcccccccChhHHHHHHHHHHHHHHHHHHH
Q 000860 396 SELPILISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGL 475 (1250)
Q Consensus 396 ~~~~~~~~~~~v~~~e~~~~~y~~~~~~la~~l~~lp~~~~~~~i~~~ivy~~~gl~~~~~~f~~~~~~~~~~~~~~~~l 475 (1250)
.|+|
T Consensus 241 ---------------------------------------------------~MvG------------------------- 244 (500)
T COG1129 241 ---------------------------------------------------LMVG------------------------- 244 (500)
T ss_pred ---------------------------------------------------HhhC-------------------------
Confidence 0000
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhCHHHHHHHHHHHhhcCCccccccCCCcccccc
Q 000860 476 YRMMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATRWMKKSAIGNNTVG 555 (1250)
Q Consensus 476 ~~~i~~~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~yisp~~y~~~a~~~~ef~~~~~~~~~~~~~~~~g 555 (1250)
T Consensus 245 -------------------------------------------------------------------------------- 244 (500)
T COG1129 245 -------------------------------------------------------------------------------- 244 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCccccccccccchhhhccccccccccccccCCccc
Q 000860 556 YNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKGVASQGCELKTTSSRED 635 (1250)
Q Consensus 556 ~~~l~~~~~~~~~~~~w~~~~ill~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1250)
... . . ... . ..
T Consensus 245 r~~------~--~------------------------------------------------------~~~------~-~~ 255 (500)
T COG1129 245 REL------E--D------------------------------------------------------LFP------E-PP 255 (500)
T ss_pred cch------h--h------------------------------------------------------hcc------c-cc
Confidence 000 0 0 000 0 00
Q ss_pred CCCCCcccCCCCeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 000860 636 GKKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG 715 (1250)
Q Consensus 636 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~ 715 (1250)
.. ...+..++++|++.. ..++|+||++++||+++|.|-=|||+|-|+++|.|..+
T Consensus 256 ~~------~~~~~~l~v~~l~~~-----------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-- 310 (500)
T COG1129 256 EE------GIGEPVLEVRNLSGG-----------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP-- 310 (500)
T ss_pred cc------CCCCcEEEEecCCCC-----------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc--
Confidence 00 000124566666521 13789999999999999999999999999999999654
Q ss_pred eeEEEEEECCccCCcc----cccceEEEEcCC---CCCCCCCCHHHHHHHHHhcCCC-C-CCCHHHHHHHHHHHHHHcCC
Q 000860 716 YIEGDIKISGYPKEQS----TFARISGYVEQE---DVHSPQVTIEESLWFSANLRLP-K-EISKDQRHEFVEEVMSLVEL 786 (1250)
Q Consensus 716 ~~~G~i~~~g~~~~~~----~~~~~~~yv~q~---~~~~~~ltv~e~l~~~~~l~~~-~-~~~~~~~~~~v~~~l~~l~l 786 (1250)
..+|+|.+||.++... ..+.-++|||.| +-+++.++|++|+.++...+.. . -.+....++.+++.++.+++
T Consensus 311 ~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~I 390 (500)
T COG1129 311 ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI 390 (500)
T ss_pred CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCc
Confidence 3589999999986532 345578999988 4578899999999988322211 1 24556667788999999988
Q ss_pred ccc-ccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHH
Q 000860 787 DSL-RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEI 865 (1250)
Q Consensus 787 ~~~-~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~ 865 (1250)
... .+..++ .||||.+|||.|||.|..+|+||+|||||.|.|..+..+|.++|++++++|++||+++.+. +|+
T Consensus 391 k~~s~~~~v~-----~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEl 464 (500)
T COG1129 391 KTPSPEQPIG-----TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PEL 464 (500)
T ss_pred ccCCccchhh-----cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHH
Confidence 643 334554 4999999999999999999999999999999999999999999999999999999999997 489
Q ss_pred HHhhcceeeeecCcEEEEe
Q 000860 866 FEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 866 ~~~~d~v~~l~~gg~~~~~ 884 (1250)
..+||||+||.+ |+++-.
T Consensus 465 l~~~DRIlVm~~-Gri~~e 482 (500)
T COG1129 465 LGLSDRILVMRE-GRIVGE 482 (500)
T ss_pred HhhCCEEEEEEC-CEEEEE
Confidence 999999999986 676653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=513.23 Aligned_cols=200 Identities=20% Similarity=0.281 Sum_probs=158.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+. ++.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~~------------~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYPG------------GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeCC------------CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--
Confidence 5899999988731 2358999999999999999999999999999999999876 35799988652
Q ss_pred CcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHH
Q 000860 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-LRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~v~~~~~~~lSgGer 807 (1250)
..+||++|+.. +.+++.++.........+ ... .+.++++++.+++.+ ..+..++ .||||||
T Consensus 572 ------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~~-----~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPMY-----TLSGGQK 633 (718)
T ss_pred ------eeEEEEecccc--ccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCcc-----ccCHHHH
Confidence 35899999852 445666654322111111 111 245788999999974 5566654 4999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEE-EeCC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI-YGGK 886 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g~ 886 (1250)
|||+||++|+.+|++|+|||||+|||+.+...+++.|++. +.|||+++|++. .+...+|++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999998888764 349999999975 57778999999986 6766 7776
Q ss_pred C
Q 000860 887 L 887 (1250)
Q Consensus 887 ~ 887 (1250)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 4
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=486.77 Aligned_cols=199 Identities=27% Similarity=0.346 Sum_probs=161.2
Q ss_pred eeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCcc
Q 000860 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 727 (1250)
Q Consensus 648 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 727 (1250)
..++++|+++.|+. ++.+++++|+.|++|+.+||+||||+|||||||+|+|...+ .+|.|.+...
T Consensus 320 ~vl~~~~~~~~y~~------------~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~--~~G~v~~g~~- 384 (530)
T COG0488 320 LVLEFENVSKGYDG------------GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTVKVGET- 384 (530)
T ss_pred eeEEEeccccccCC------------CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc--CCceEEeCCc-
Confidence 36899999988742 25799999999999999999999999999999999997653 3788876422
Q ss_pred CCcccccceEEEEcCCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHH
Q 000860 728 KEQSTFARISGYVEQED-VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL-RHALVGSPGSFGLSTE 805 (1250)
Q Consensus 728 ~~~~~~~~~~~yv~q~~-~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~v~~~~~~~lSgG 805 (1250)
-.+||.+|+. .+.+..|+.|++.-.. | .. .+..+...+..+++..- ..+.++ .||||
T Consensus 385 -------v~igyf~Q~~~~l~~~~t~~d~l~~~~----~-~~----~e~~~r~~L~~f~F~~~~~~~~v~-----~LSGG 443 (530)
T COG0488 385 -------VKIGYFDQHRDELDPDKTVLEELSEGF----P-DG----DEQEVRAYLGRFGFTGEDQEKPVG-----VLSGG 443 (530)
T ss_pred -------eEEEEEEehhhhcCccCcHHHHHHhhC----c-cc----cHHHHHHHHHHcCCChHHHhCchh-----hcCHh
Confidence 2489999995 4457889999875321 1 11 14557888999998654 345555 49999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
||.|+.+|+.++.+|.+|+|||||++||..+...+.+.|.+. ..|||+++||.. -+-..+++++++.+ +...|.|
T Consensus 444 Ek~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~-Fl~~va~~i~~~~~-~~~~~~g 518 (530)
T COG0488 444 EKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDRY-FLDRVATRIWLVED-KVEEFEG 518 (530)
T ss_pred HHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHhhcceEEEEcC-ceeEcCC
Confidence 999999999999999999999999999999999999999865 569999999975 47788999999975 5566656
Q ss_pred CC
Q 000860 886 KL 887 (1250)
Q Consensus 886 ~~ 887 (1250)
..
T Consensus 519 ~y 520 (530)
T COG0488 519 GY 520 (530)
T ss_pred CH
Confidence 54
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=437.08 Aligned_cols=440 Identities=21% Similarity=0.280 Sum_probs=340.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc----ccceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ----VQRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+.||+|.||||||||+++|.|.++|+ +|+|.++|+++.-.. .+.-||.|.|+..+++++||.|||..+.....
T Consensus 32 IHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~ 108 (501)
T COG3845 32 IHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSK 108 (501)
T ss_pred EEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCcccc
Confidence 46899999999999999999999975 999999999875332 35569999999999999999999988754211
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
... .... ..+.+++++.+..||+-..|..|++ ||-||||||.|
T Consensus 109 ~~~------~~~~--------------------------~~~~~i~~l~~~yGl~vdp~~~V~d-----LsVG~qQRVEI 151 (501)
T COG3845 109 GGL------IDRR--------------------------QARARIKELSERYGLPVDPDAKVAD-----LSVGEQQRVEI 151 (501)
T ss_pred ccc------cCHH--------------------------HHHHHHHHHHHHhCCCCCccceeec-----CCcchhHHHHH
Confidence 000 0000 0122477888999999888888887 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecCh-hhHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPR-AEVL 235 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~-~~~~ 235 (1250)
-++|+++|++|||||||+-|-|....++++.|+++++ .|+|||++ +|-..|+.+.+||+.||++|+++..-++ .+.
T Consensus 152 lKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~I-THKL~Ev~~iaDrvTVLR~Gkvvgt~~~~~~~- 228 (501)
T COG3845 152 LKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFI-THKLKEVMAIADRVTVLRRGKVVGTVDPVAET- 228 (501)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEE-eccHHHHHHhhCeeEEEeCCeEEeeecCCCCC-
Confidence 9999999999999999999999999999999999976 58999886 5678999999999999999998643221 000
Q ss_pred HHHHhCCCCCCCCCCchhHHHhhcCchhhhhhhccCCCCCCCCCHHHHHHHHHhChhhhhhHhhccCCCCCCCCCCCccc
Q 000860 236 EFFESLGFRLPPRKGVADFLQEVTSKKDQAKYWADTSKPYVFLPVSEIANAFKSSRFGKSLESSLAVPFDKSKSHPSALA 315 (1250)
Q Consensus 236 ~~f~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (1250)
+.++.++.
T Consensus 229 -------------------------------------------t~~ela~l----------------------------- 236 (501)
T COG3845 229 -------------------------------------------TEEELAEL----------------------------- 236 (501)
T ss_pred -------------------------------------------CHHHHHHH-----------------------------
Confidence 00000000
Q ss_pred ccCccccHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcccchhHHHHHHHHHHHHHHHHh
Q 000860 316 TTKYAVSKWELFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKGALYLNCHFFGMVHMMFNCF 395 (1250)
Q Consensus 316 ~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l~~g~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 395 (1250)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHhhhcchhHHHhhhCCCCChhHHHHHHHHHHHhHHHHHHHHHHhhhhcccccccChhHHHHHHHHHHHHHHHHHHH
Q 000860 396 SELPILISRLPVFYKQRDNYFHPAWAWSIASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFSIHQMALGL 475 (1250)
Q Consensus 396 ~~~~~~~~~~~v~~~e~~~~~y~~~~~~la~~l~~lp~~~~~~~i~~~ivy~~~gl~~~~~~f~~~~~~~~~~~~~~~~l 475 (1250)
|
T Consensus 237 ----------------------------------------------------M--------------------------- 237 (501)
T COG3845 237 ----------------------------------------------------M--------------------------- 237 (501)
T ss_pred ----------------------------------------------------h---------------------------
Confidence 0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhhCHHHHHHHHHHHhhcCCccccccCCCcccccc
Q 000860 476 YRMMASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFTATRWMKKSAIGNNTVG 555 (1250)
Q Consensus 476 ~~~i~~~~~~~~ia~~~~~~~~~~~~l~~Gf~i~~~~i~~~~~w~~yisp~~y~~~a~~~~ef~~~~~~~~~~~~~~~~g 555 (1250)
+|
T Consensus 238 ------------------------------------------------------------------------------vG 239 (501)
T COG3845 238 ------------------------------------------------------------------------------VG 239 (501)
T ss_pred ------------------------------------------------------------------------------cC
Confidence 00
Q ss_pred chhccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCccccccccccchhhhccccccccccccccCCccc
Q 000860 556 YNVLHSHSLPTDDYWYWLGVGVMLLYAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKGVASQGCELKTTSSRED 635 (1250)
Q Consensus 556 ~~~l~~~~~~~~~~~~w~~~~ill~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1250)
..+.. . ... .+
T Consensus 240 ~~v~~----------------------------------------------~---------------~~~-----~~--- 250 (501)
T COG3845 240 REVVL----------------------------------------------R---------------VVK-----PP--- 250 (501)
T ss_pred Ccccc----------------------------------------------c---------------ccc-----CC---
Confidence 00000 0 000 00
Q ss_pred CCCCCcccCCCCeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC
Q 000860 636 GKKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG 715 (1250)
Q Consensus 636 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~ 715 (1250)
.. | ....++++|++..-.. ..+.+++|||++++||++||.|-.|-|-+.|+.+|+|..+.
T Consensus 251 -~~-----p-g~~vL~V~~L~v~~~~------------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~- 310 (501)
T COG3845 251 -ST-----P-GEVVLEVEDLSVKDRR------------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKP- 310 (501)
T ss_pred -CC-----C-CCeEEEEeeeEeecCC------------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCcc-
Confidence 00 0 0125888998864321 24579999999999999999999999999999999997653
Q ss_pred eeEEEEEECCccC-C---cc-cccceEEEEcCCC---CCCCCCCHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHHHH
Q 000860 716 YIEGDIKISGYPK-E---QS-TFARISGYVEQED---VHSPQVTIEESLWFSANLRLP----KEISKDQRHEFVEEVMSL 783 (1250)
Q Consensus 716 ~~~G~i~~~g~~~-~---~~-~~~~~~~yv~q~~---~~~~~ltv~e~l~~~~~l~~~----~~~~~~~~~~~v~~~l~~ 783 (1250)
.+|+|.++|.++ . .. ..+.-+||||.|. .+.+.+|+.||+.+...-+.| .-.+..+.++...++++.
T Consensus 311 -~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~ 389 (501)
T COG3845 311 -ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEE 389 (501)
T ss_pred -CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHH
Confidence 359999999986 2 22 2334689999985 456899999999877543211 124456778888999999
Q ss_pred cCCcccc-cccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 000860 784 VELDSLR-HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPS 862 (1250)
Q Consensus 784 l~l~~~~-~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 862 (1250)
+++.... +..+ +.||||++||+-+||+|.++|++|+..+||.|||..+...|.+.|.+.+++|+.|++++-+..
T Consensus 390 fdVr~~~~~~~a-----~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD 464 (501)
T COG3845 390 FDVRAPSPDAPA-----RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD 464 (501)
T ss_pred cCccCCCCCcch-----hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH
Confidence 9887332 2223 469999999999999999999999999999999999999999999999999999999999985
Q ss_pred HHHHHhhcceeeeecCcEEEEeCCCCc
Q 000860 863 IEIFEAFDELLLMKRGGRVIYGGKLGV 889 (1250)
Q Consensus 863 ~~~~~~~d~v~~l~~gg~~~~~g~~~~ 889 (1250)
|++.++|||.+|.+ |+++...++..
T Consensus 465 -Eil~lsDrIaVi~~-Gri~~~~~~~~ 489 (501)
T COG3845 465 -EILELSDRIAVIYE-GRIVGIVPPEE 489 (501)
T ss_pred -HHHHhhheeeeeeC-Cceeccccccc
Confidence 79999999999985 78888777653
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=380.92 Aligned_cols=215 Identities=27% Similarity=0.388 Sum_probs=192.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++++|. +.++|+|||++|++||+++|+|||||||||||++|.+... +.+|+|.++|.++
T Consensus 2 mi~i~~l~K~fg-------------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~ 66 (240)
T COG1126 2 MIEIKNLSKSFG-------------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDV 66 (240)
T ss_pred eEEEEeeeEEeC-------------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEec
Confidence 478999998874 4679999999999999999999999999999999999776 4589999999764
Q ss_pred C----cccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 E----QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~----~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
. -...|+.+|+|+|+..|||++||.||+..+...- .+.++++.+++..++|+.+||.+.+|..+. .|||
T Consensus 67 ~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----qLSG 139 (240)
T COG1126 67 GDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYPA-----QLSG 139 (240)
T ss_pred cchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----ccCc
Confidence 3 2357889999999999999999999999885322 356788888999999999999999998876 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEe
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 884 (1250)
||+|||+|||||+.+|+++++|||||+|||+...++.+.+++++++|.|.|++||+... ..+.+|||+.|++ |+++..
T Consensus 140 GQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~ 217 (240)
T COG1126 140 GQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEE 217 (240)
T ss_pred HHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999763 6788999999985 788888
Q ss_pred CCC
Q 000860 885 GKL 887 (1250)
Q Consensus 885 g~~ 887 (1250)
|++
T Consensus 218 g~p 220 (240)
T COG1126 218 GPP 220 (240)
T ss_pred cCH
Confidence 876
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=380.44 Aligned_cols=218 Identities=24% Similarity=0.346 Sum_probs=193.8
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++++++.+... ..+...+|+|||++|++||+.||+|+||||||||++++.+... +.+|+|.+||.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 6889999877531 1134579999999999999999999999999999999999766 45899999997754
Q ss_pred c------ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000860 730 Q------STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 730 ~------~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lS 803 (1250)
. +..|+.||+++|+..++...||.||+.|...+. +.++++++++|.++++.+||++.++..+. +||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP~-----qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYPA-----QLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCch-----hcC
Confidence 3 346789999999999999999999999998775 46789999999999999999999988875 499
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 882 (1250)
|||||||+|||||+.+|+||++|||||+|||.+...|.+.|+++.++ |.||+++||++. -+-+.|||+.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999998654 999999999974 36779999999985 8999
Q ss_pred EeCCC
Q 000860 883 YGGKL 887 (1250)
Q Consensus 883 ~~g~~ 887 (1250)
..|+.
T Consensus 222 E~G~v 226 (339)
T COG1135 222 EEGTV 226 (339)
T ss_pred EeccH
Confidence 99986
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-44 Score=364.23 Aligned_cols=213 Identities=26% Similarity=0.384 Sum_probs=192.1
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++|+|+++.|. ++++++|+|++|++||++.++|||||||||+||+|.+... +.+|+|.+||.+++
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecc
Confidence 68999998774 4579999999999999999999999999999999999877 45899999999876
Q ss_pred c---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCcCCH
Q 000860 730 Q---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS--LRHALVGSPGSFGLST 804 (1250)
Q Consensus 730 ~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~v~~~~~~~lSg 804 (1250)
. ..+|+.||||-|+-.+||++||.||+.+-..+. +.++++++++++|+++++||+. +.++.+. .|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~-----eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYPH-----ELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCch-----hcCc
Confidence 4 467899999999999999999999999877664 6788999999999999999974 6777664 5999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
||+|||.+||||+.+|+||+||||+++|||-++..+++.++++.+. |+|||++|||.. |.++++|||++|++ |+++.
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~-G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDA-GEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecC-CeEEE
Confidence 9999999999999999999999999999999999999999998655 999999999985 78999999999985 78887
Q ss_pred eCCC
Q 000860 884 GGKL 887 (1250)
Q Consensus 884 ~g~~ 887 (1250)
.+++
T Consensus 217 ~~~P 220 (309)
T COG1125 217 YDTP 220 (309)
T ss_pred eCCH
Confidence 7776
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=366.79 Aligned_cols=208 Identities=28% Similarity=0.441 Sum_probs=178.0
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.|.... ...++|+++|++|++||+++|||||||||||||++|+|...+ .+|.|.++|.++.
T Consensus 2 i~~~~v~k~y~~~~---------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~ 70 (226)
T COG1136 2 IELKNVSKIYGLGG---------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLT 70 (226)
T ss_pred cEEeeeEEEeccCC---------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcC
Confidence 46788888775421 235799999999999999999999999999999999998764 5899999997754
Q ss_pred c------ccc-cceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccccc-ccccCCCCCc
Q 000860 730 Q------STF-ARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRH-ALVGSPGSFG 801 (1250)
Q Consensus 730 ~------~~~-~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~-~~v~~~~~~~ 801 (1250)
. ..+ ++.+|||+|+..++|.+||+||+.+...+.. ....+.+++++++++.+||.+..+ +.+. .
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~p~-----e 142 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKKPS-----E 142 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCCch-----h
Confidence 2 123 4579999999999999999999998775542 223356778899999999997666 6565 4
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 802 lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
|||||||||+|||||+.+|+|++.||||.+||+.++..|++.++++.++ |+|||++|||| ++...+||++.|.+|
T Consensus 143 LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG 218 (226)
T COG1136 143 LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDG 218 (226)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999765 99999999996 588899999999874
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=359.18 Aligned_cols=229 Identities=25% Similarity=0.378 Sum_probs=200.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++++++++ +++.|++|||++|++||+++||||||+|||||||+|.|..+ +.+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcch
Confidence 58999999876 35679999999999999999999999999999999999877 4589999999986
Q ss_pred Cc------ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCc
Q 000860 729 EQ------STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL-RHALVGSPGSFG 801 (1250)
Q Consensus 729 ~~------~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~v~~~~~~~ 801 (1250)
.+ ...++++|+++|+-.||..+||+||+.|..+-. ...+++..++.+..-++.+||... .+..+. .
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~Ps-----E 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLYPS-----E 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhCch-----h
Confidence 43 245778999999999999999999999975433 356778888889999999999887 666665 4
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 802 lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
||||++||++||||++.||+|+++||||+||||.++..+.++|+++.++ |.|++++|||.. +++..+|++++|.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999776 999999999986 68999999999986 89
Q ss_pred EEEeCCCCcc----chhHHHHhhhC
Q 000860 881 VIYGGKLGVH----SQIMIDYFQGL 901 (1250)
Q Consensus 881 ~~~~g~~~~~----~~~~~~yf~~~ 901 (1250)
++..|++++. ..-+.+||...
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~ 248 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGI 248 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCC
Confidence 9999998631 13467888765
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=393.01 Aligned_cols=224 Identities=31% Similarity=0.479 Sum_probs=196.2
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.+.. ++.+|+||||++++||++|++||||||||||+|+|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~k~~~~------------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~ 69 (293)
T COG1131 4 VIEVRNLTKKYGG------------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDV 69 (293)
T ss_pred eeeecceEEEeCC------------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeC
Confidence 4678899987731 36799999999999999999999999999999999998773 689999999886
Q ss_pred Cc--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000860 729 EQ--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQ 806 (1250)
Q Consensus 729 ~~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGe 806 (1250)
.. ...++.+||+||++.++|.+||+|++.|.+.++.+.. +..+++++++++.++|.+..++.++ +||+||
T Consensus 70 ~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~~-----~lS~G~ 141 (293)
T COG1131 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKVR-----TLSGGM 141 (293)
T ss_pred ccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcchh-----hcCHHH
Confidence 54 4567889999999999999999999999999885432 4556789999999999986666665 599999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCC-CEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTG-RTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 807 rqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
|||++||+||+.+|+++||||||+|||+.++..+.+.|++++++| +||+++||+++ ++...||+|++|++ |++++.|
T Consensus 142 kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g 219 (293)
T COG1131 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEG 219 (293)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeC
Confidence 999999999999999999999999999999999999999999887 89999999985 68888999999985 8999999
Q ss_pred CCCccchhHHHHhhh
Q 000860 886 KLGVHSQIMIDYFQG 900 (1250)
Q Consensus 886 ~~~~~~~~~~~yf~~ 900 (1250)
+. .++...+..
T Consensus 220 ~~----~~l~~~~~~ 230 (293)
T COG1131 220 TP----EELKEKFGG 230 (293)
T ss_pred CH----HHHHHhhcc
Confidence 76 445555543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=365.85 Aligned_cols=204 Identities=26% Similarity=0.388 Sum_probs=182.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.+.++++++.+. ..++|+|+|++|++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc
Confidence 478889988774 2579999999999999999999999999999999999877 4589999999987
Q ss_pred CcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000860 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerq 808 (1250)
.. -...+|||+|++.++|.+||+||+.++...+. .++++.+++++++++.+||.+..|..+. .|||||||
T Consensus 68 ~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----qLSGGMrQ 137 (248)
T COG1116 68 TG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYPH-----QLSGGMRQ 137 (248)
T ss_pred CC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCcc-----ccChHHHH
Confidence 32 34678999999999999999999999887652 4566777799999999999999999875 49999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 809 r~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
||+|||||+.+|+||+||||+++||+.|+..+++.|.++.+ .++||+++|||.. |...+.|||++|+++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999988764 5899999999985 677899999999863
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=357.84 Aligned_cols=220 Identities=25% Similarity=0.348 Sum_probs=190.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++..|+ +++++|+|||++|++||++||+|||||||||||++|.|... +.+|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 689999999885 24679999999999999999999999999999999999765 4589999999765
Q ss_pred Cc------ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCC-----CCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000860 729 EQ------STFARISGYVEQEDVHSPQVTIEESLWFSANLRLP-----KEISKDQRHEFVEEVMSLVELDSLRHALVGSP 797 (1250)
Q Consensus 729 ~~------~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~ 797 (1250)
.. +.+|+.+||++|++.+.|.+||.+|+..+..-+.+ .+...++.+..+-+.++.+|+.+.+.++.++
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~- 147 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAST- 147 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhcc-
Confidence 32 34678899999999999999999999877432222 1222345556678899999999999888875
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 798 GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 798 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
|||||+|||+|||||+.+|+|++.|||+++||+.+++.+|+.|+++.+ .|.|||++.||... ..+.|||++-|.
T Consensus 148 ----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 148 ----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 999999999999999999999999999999999999999999999875 48999999999753 668999999998
Q ss_pred cCcEEEEeCCCCc
Q 000860 877 RGGRVIYGGKLGV 889 (1250)
Q Consensus 877 ~gg~~~~~g~~~~ 889 (1250)
+ |+++|+||..+
T Consensus 223 ~-G~ivfDg~~~e 234 (258)
T COG3638 223 A-GRIVFDGPASE 234 (258)
T ss_pred C-CcEEEeCChhh
Confidence 5 89999999854
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=367.70 Aligned_cols=216 Identities=25% Similarity=0.431 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+. + ++|+|||+++++||+++|+||||||||||+|+|.|..+ +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~~------------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYGN------------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEECC------------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 5899999998852 2 59999999999999999999999999999999999776 4689999999987
Q ss_pred CcccccceEEEEcCCC---CCCCCCCHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000860 729 EQSTFARISGYVEQED---VHSPQVTIEESLWFSANLRL--PKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~---~~~~~ltv~e~l~~~~~l~~--~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lS 803 (1250)
....-+.+||||||.. .-| ..||+|.+..+..-+. -...+ ++.++.++++|+.+|+.+.+|+.+|+ ||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~f-P~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~~-----LS 141 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSF-PITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIGE-----LS 141 (254)
T ss_pred cccccCCeEEEcCcccccCCCC-CcCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCcccc-----cC
Confidence 6544457899999964 233 4799998887632221 11223 33478899999999999999999987 99
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
|||+|||-|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||+. .+.+.||+|+.|+ +++.+
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~ 218 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIA 218 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEe
Confidence 99999999999999999999999999999999999999999999988999999999996 5889999999996 58888
Q ss_pred eCCCCc
Q 000860 884 GGKLGV 889 (1250)
Q Consensus 884 ~g~~~~ 889 (1250)
.|++++
T Consensus 219 ~G~~~~ 224 (254)
T COG1121 219 SGPPEE 224 (254)
T ss_pred ccChhh
Confidence 898864
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=373.24 Aligned_cols=218 Identities=28% Similarity=0.394 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++.+|+++.|+ ++.+|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCch
Confidence 478999999884 4579999999999999999999999999999999999776 3579999999986
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPK-EISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
.. +.+.+.+|||||+....+.+||+|-+.++..-+... ....++.++.++++++.+|+.+.+++.+.+ |||
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~-----LSG 141 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSG 141 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccc-----cCh
Confidence 54 457789999999998888999999998874432211 112334455799999999999999999875 999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
|||||+.|||||+++|+||+||||||+||...+.++++.++++++ +|+|||+++||++ .....||++++|++ |+++.
T Consensus 142 GerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~-G~i~a 219 (258)
T COG1120 142 GERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKD-GKIVA 219 (258)
T ss_pred hHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEe
Confidence 999999999999999999999999999999999999999999984 5999999999997 47889999999985 78888
Q ss_pred eCCCC
Q 000860 884 GGKLG 888 (1250)
Q Consensus 884 ~g~~~ 888 (1250)
.|++.
T Consensus 220 ~G~p~ 224 (258)
T COG1120 220 QGTPE 224 (258)
T ss_pred ecCcc
Confidence 88875
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=338.14 Aligned_cols=212 Identities=27% Similarity=0.379 Sum_probs=186.3
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++|+||++.|+. .+.+|+||||+|++||++-|+||||||||||||+|.+... +..|+|.+||.++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 688999988753 3569999999999999999999999999999999999765 45799999999865
Q ss_pred c------ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000860 730 Q------STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 730 ~------~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lS 803 (1250)
. .-+||+||+|+||..++++.||+||+.|+.... +.+.++.+++|.++++..||.+.++..+. .||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALPS-----QLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCcc-----ccC
Confidence 3 236889999999999999999999999987765 45678889999999999999999888765 499
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhh-cceeeeecCcEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAF-DELLLMKRGGRVI 882 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~-d~v~~l~~gg~~~ 882 (1250)
|||+|||+||||++.+|++|+.||||.+||+..+.+|++++.++.+.|.|||+.||+. ++.... -+++.|++ |+++
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~--~lv~~~~~rvl~l~~-Grl~ 216 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL--ELVNRMRHRVLALED-GRLV 216 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH--HHHHhccCcEEEEeC-CEEE
Confidence 9999999999999999999999999999999999999999999998999999999994 455544 56777875 7887
Q ss_pred EeCC
Q 000860 883 YGGK 886 (1250)
Q Consensus 883 ~~g~ 886 (1250)
.+..
T Consensus 217 ~d~~ 220 (223)
T COG2884 217 RDES 220 (223)
T ss_pred eccc
Confidence 7644
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-43 Score=344.92 Aligned_cols=215 Identities=28% Similarity=0.405 Sum_probs=193.9
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++..+++++|+. ..++++||||+++.||++||+|||||||||+|++|++... +.+|.|.+||.+..
T Consensus 2 l~v~~l~K~y~~------------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~ 67 (245)
T COG4555 2 LEVTDLTKSYGS------------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTV 67 (245)
T ss_pred eeeeehhhhccC------------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccc
Confidence 566777777643 2348999999999999999999999999999999999877 45899999999854
Q ss_pred c--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 730 Q--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 730 ~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
+ ...++.+|.++.+.-++..||++|||.|.+++. +.+..+.+++++++.+.|+|.++.|+++|+ +|.|+|
T Consensus 68 ~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~k 139 (245)
T COG4555 68 RDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVGE-----FSTGMK 139 (245)
T ss_pred cChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHhh-----hchhhH
Confidence 3 457889999998888899999999999999886 566778889999999999999999999985 999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
|||+|||||+.+|++++|||||||||..+.+.+.+.++++...|++||+++|..+ |+..+||++++|++ |++++.|+.
T Consensus 140 qkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~ 217 (245)
T COG4555 140 QKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSI 217 (245)
T ss_pred HHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCH
Confidence 9999999999999999999999999999999999999999888999999999984 78889999999986 799999986
Q ss_pred C
Q 000860 888 G 888 (1250)
Q Consensus 888 ~ 888 (1250)
.
T Consensus 218 ~ 218 (245)
T COG4555 218 E 218 (245)
T ss_pred H
Confidence 3
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=381.30 Aligned_cols=215 Identities=27% Similarity=0.418 Sum_probs=195.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|.. ..+|+|+|++|+.||.++|+|||||||||||++|||..+ +.+|+|.++|.++
T Consensus 3 ~i~l~~v~K~yg~-------------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFGS-------------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcCC-------------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 5899999988742 128999999999999999999999999999999999876 4689999999998
Q ss_pred Cc-ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 729 EQ-STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 729 ~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
+. ...+|.+|+|+|+..++|++||+||+.|+.+++ +.++++.+++|+++.+.|+|++..|+++. +||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----QLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCcc-----cCChhhH
Confidence 76 456788999999999999999999999998776 45788899999999999999999999875 4999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
|||+|||||+++|++++||||.|+||+..+..+...|+++.++ |.|+|.+|||. .|...++|||++|. +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998765 89999999997 57899999999998 589999888
Q ss_pred CC
Q 000860 887 LG 888 (1250)
Q Consensus 887 ~~ 888 (1250)
+.
T Consensus 218 p~ 219 (338)
T COG3839 218 PL 219 (338)
T ss_pred hH
Confidence 74
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=382.47 Aligned_cols=216 Identities=28% Similarity=0.421 Sum_probs=195.2
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|. +..+|+|+|++|++||+++|+|||||||||||++|+|... +.+|+|.++|.++
T Consensus 5 ~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 689999998874 4579999999999999999999999999999999999876 4589999999998
Q ss_pred Cc-ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 729 EQ-STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 729 ~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
.. ...+|.+|+|+|+-.+||+|||+||+.|+.+++ ....+++++++|+++++.++|++.+++.+.. |||||+
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~q-----LSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKPHQ-----LSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhChhh-----hChHHH
Confidence 65 346788999999999999999999999998743 3345677889999999999999999988864 999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
|||+|||||+.+|++|+||||.|+||..-+.+++.-|+++.++ |.|.|++|||.. |...+.|||++|++ |+++.-|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCC
Confidence 9999999999999999999999999999999999999998654 999999999974 78899999999985 89999998
Q ss_pred CC
Q 000860 887 LG 888 (1250)
Q Consensus 887 ~~ 888 (1250)
++
T Consensus 221 P~ 222 (352)
T COG3842 221 PE 222 (352)
T ss_pred HH
Confidence 74
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=378.51 Aligned_cols=200 Identities=20% Similarity=0.249 Sum_probs=155.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.+.++|++|.|+. +..++++++|-+.+++.+|++||||+|||||||++.|...+ ..|.|.-.-+.
T Consensus 389 vi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H~- 453 (614)
T KOG0927|consen 389 VIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSHN- 453 (614)
T ss_pred eEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--ccccccccccc-
Confidence 5788999987753 22689999999999999999999999999999999997663 45666433221
Q ss_pred CcccccceEEEEcCC--CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCcCCHH
Q 000860 729 EQSTFARISGYVEQE--DVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR-HALVGSPGSFGLSTE 805 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~--~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~v~~~~~~~lSgG 805 (1250)
.+++..|. +.+.-+.++-|++.=. .+++...+.+..++..+||.... +..++ .||+|
T Consensus 454 -------~~~~y~Qh~~e~ldl~~s~le~~~~~--------~~~~~~~e~~r~ilgrfgLtgd~q~~p~~-----~LS~G 513 (614)
T KOG0927|consen 454 -------KLPRYNQHLAEQLDLDKSSLEFMMPK--------FPDEKELEEMRSILGRFGLTGDAQVVPMS-----QLSDG 513 (614)
T ss_pred -------cchhhhhhhHhhcCcchhHHHHHHHh--------ccccchHHHHHHHHHHhCCCccccccchh-----hcccc
Confidence 22334443 2233355666655321 11133456678899999999544 44443 59999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
||+||..|+.++..|.||+|||||+|||..+...+.+.|.+. ..+||+++||-. -+-+.++++.+..+++...+.|
T Consensus 514 qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 514 QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCc
Confidence 999999999999999999999999999999999999999865 468999999975 4778899999999988888888
Q ss_pred CC
Q 000860 886 KL 887 (1250)
Q Consensus 886 ~~ 887 (1250)
..
T Consensus 590 ~i 591 (614)
T KOG0927|consen 590 DI 591 (614)
T ss_pred cH
Confidence 75
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=361.10 Aligned_cols=205 Identities=31% Similarity=0.467 Sum_probs=184.9
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCc---cCCc-ccccceEEEEcCCCCCCCC
Q 000860 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY---PKEQ-STFARISGYVEQEDVHSPQ 749 (1250)
Q Consensus 674 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~---~~~~-~~~~~~~~yv~q~~~~~~~ 749 (1250)
...+++|||+.|+.||++|++|||||||||||++|+|..+ +..|.|.+||. +.++ ....|++|||+|+..+|++
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 4568999999999999999999999999999999999877 45899999999 5554 3446789999999999999
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000860 750 VTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPT 829 (1250)
Q Consensus 750 ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPT 829 (1250)
+||.+|+.|+.+++ ....++.+++.+++++++.+.|++..+..+. +|||||||||++||||+..|++|+||||.
T Consensus 92 mtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP~-----QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 92 MTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYPA-----QLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred chHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCch-----hcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 99999999998776 2334567888999999999999999988774 59999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCCC
Q 000860 830 SGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLG 888 (1250)
Q Consensus 830 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 888 (1250)
++||..-+.++.+.|+++.++ |.|+|++|||+. |+++.+|||++|++ |+++..|+++
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 999999999999999998766 999999999985 79999999999986 7999989874
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=338.52 Aligned_cols=217 Identities=25% Similarity=0.360 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC---CCCeeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRK---TGGYIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~---~~~~~~G~i~~~g 725 (1250)
.++.+|+++.|. ++++|+|||+.|++++++|++|||||||||||++|.... ++-..+|+|.++|
T Consensus 7 ~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 578999999884 467999999999999999999999999999999999843 3346789999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL-RHALVGSPGS 799 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~v~~~~~ 799 (1250)
.++-. ..+|+++|+|+|.|.-|| +|++||+.|+.++.- ..+++.++.|++.++...|.+. .|++-.+ .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL~~s--a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRLHKS--A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHhhCC--c
Confidence 98643 357899999999999999 899999999988763 2336778889999998888654 4444332 2
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
.+|||||+||+||||+|+.+|+||+||||||+|||.+...|.+++.+++ +.-|||++||.+. ...+..|+...+.. |
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-G 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-c
Confidence 4699999999999999999999999999999999999999999999997 5789999999984 57788999999986 7
Q ss_pred EEEEeCCC
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
+++++|+.
T Consensus 225 ~LvE~g~T 232 (253)
T COG1117 225 ELVEFGPT 232 (253)
T ss_pred EEEEEcCH
Confidence 99999986
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=344.83 Aligned_cols=203 Identities=25% Similarity=0.403 Sum_probs=168.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCc----ccccceEEeeccccccCCCCCHHHHHHHHHHc-c
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDE----FQVQRASAYIGQTDNHIAELTVRETLDFAARC-Q 75 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~----~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~-~ 75 (1250)
+++|+|||||||||||++|.|+.+++ +|+|.++|.++.. ...|+.+|+|+|+..+||++||.||+..+... +
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~ 106 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVK 106 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHc
Confidence 47899999999999999999999865 9999999987632 24688999999999999999999999887532 1
Q ss_pred CCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhH
Q 000860 76 GANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVT 155 (1250)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ 155 (1250)
+.+. . +.+++..+.|+.+||.+.+|.... +|||||||||+
T Consensus 107 ~~~k-----------~------------------------eA~~~A~~lL~~VGL~~ka~~yP~-----qLSGGQqQRVA 146 (240)
T COG1126 107 KLSK-----------A------------------------EAREKALELLEKVGLADKADAYPA-----QLSGGQQQRVA 146 (240)
T ss_pred CCCH-----------H------------------------HHHHHHHHHHHHcCchhhhhhCcc-----ccCcHHHHHHH
Confidence 1110 0 012235678999999998887654 49999999999
Q ss_pred HHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 156 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 156 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|||||+.+|+++|+|||||+|||....++++.+++++++ |.|.|+++ |....+.+.+|||+.|++|+++++|+++++.
T Consensus 147 IARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVT-HEM~FAr~VadrviFmd~G~iie~g~p~~~f 224 (240)
T COG1126 147 IARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVT-HEMGFAREVADRVIFMDQGKIIEEGPPEEFF 224 (240)
T ss_pred HHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEe-chhHHHHHhhheEEEeeCCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999975 88988875 5577788899999999999999999998873
Q ss_pred HHHHhCCCCCCCCCCchhHHH
Q 000860 236 EFFESLGFRLPPRKGVADFLQ 256 (1250)
Q Consensus 236 ~~f~~lG~~~~~~~~~~~~~~ 256 (1250)
..|.+....+|+.
T Consensus 225 --------~~p~~~R~~~FL~ 237 (240)
T COG1126 225 --------DNPKSERTRQFLS 237 (240)
T ss_pred --------cCCCCHHHHHHHH
Confidence 3455444555554
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=398.49 Aligned_cols=216 Identities=22% Similarity=0.349 Sum_probs=189.2
Q ss_pred eeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCcc
Q 000860 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 727 (1250)
Q Consensus 648 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 727 (1250)
..++++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEE
Confidence 36899999988742 13569999999999999999999999999999999999876 358999999998
Q ss_pred CCc--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000860 728 KEQ--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 728 ~~~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgG 805 (1250)
+.. ...++.+|||+|++.+++.+||+|++.|.++++ +.+.++.+++++++++.+||.+..|+.+++ ||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~~-----LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQD-----LSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHH
Confidence 643 234677999999999999999999999987765 233445567789999999999988888765 9999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
|||||+||+||+.+|+|++|||||+|||+.+++.+++.|++++ +|+|||++||++. ++...+||+++|++ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 5999999999985 57778999999985 7899988
Q ss_pred CC
Q 000860 886 KL 887 (1250)
Q Consensus 886 ~~ 887 (1250)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 86
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=373.22 Aligned_cols=214 Identities=29% Similarity=0.419 Sum_probs=189.2
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEec
Confidence 689999999873 2469999999999999999999999999999999999876 3589999999986
Q ss_pred Cc--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000860 729 EQ--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQ 806 (1250)
Q Consensus 729 ~~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGe 806 (1250)
.. ...++.+|||||++.+++.+||+||+.|.+.++ ..+..+..++++++++.++|.+..++.++. |||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVGE-----LSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchhh-----CCHHH
Confidence 43 235678999999999999999999999876653 234445566788999999999888888864 99999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCC
Q 000860 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 807 rqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999985 68889999999985 79999998
Q ss_pred C
Q 000860 887 L 887 (1250)
Q Consensus 887 ~ 887 (1250)
.
T Consensus 222 ~ 222 (306)
T PRK13537 222 P 222 (306)
T ss_pred H
Confidence 6
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=323.20 Aligned_cols=196 Identities=28% Similarity=0.413 Sum_probs=174.3
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc-ccccceEEEEcCCCCCCCCCCHHHHHHH
Q 000860 680 NVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-STFARISGYVEQEDVHSPQVTIEESLWF 758 (1250)
Q Consensus 680 ~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~~ 758 (1250)
..++.|++||++||+||||||||||||+|+|... +.+|+|.+||.+... ....|-+++++|+..+|.++||.+|+.+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 5788999999999999999999999999999876 458999999998654 3456778999999999999999999987
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHH
Q 000860 759 SANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838 (1250)
Q Consensus 759 ~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~ 838 (1250)
+.+-.+ +.+ ++.+++++.++..+||..+.+++.+. |||||||||++||+|+++-+||+||||+|+||+.-+.
T Consensus 95 Gl~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc--ccC-HHHHHHHHHHHHHhChhhHhhhCccc-----cCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 753222 233 45567899999999999999999875 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 839 IVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 839 ~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
++...+.++++ ++.|++++||+|+ +.....|+++++++ |++.+.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 99999999875 4899999999996 78999999999986 899999986
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=373.43 Aligned_cols=217 Identities=24% Similarity=0.339 Sum_probs=188.4
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.|+.. .+.+++|+||||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 6899999988421 012469999999999999999999999999999999999876 35899999999864
Q ss_pred cc------cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000860 730 QS------TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 730 ~~------~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lS 803 (1250)
.. ..++.+||++|+..+++..||+||+.+..... ..++++.++++.++++.+||.+..|..++ .||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~-----~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPS-----NLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCC
Confidence 31 24668999999999999999999999876532 24556677789999999999998888775 499
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 882 (1250)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999974 56788999999985 8999
Q ss_pred EeCCC
Q 000860 883 YGGKL 887 (1250)
Q Consensus 883 ~~g~~ 887 (1250)
..|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99886
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=374.27 Aligned_cols=216 Identities=25% Similarity=0.354 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ +++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.+||.++
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478999998873 12468999999999999999999999999999999999876 4689999999986
Q ss_pred Cc-ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 729 EQ-STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 729 ~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
.. ...++.+|||+|++.++|++||+||+.|....+ ..++.+.+++++++++.++|.+..++.+.. ||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~ 140 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPRE-----LSGGQR 140 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChhh-----CCHHHH
Confidence 43 223578999999999999999999999986543 245566677899999999999988888754 999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 141 QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~ 218 (356)
T PRK11650 141 QRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGT 218 (356)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECC
Confidence 9999999999999999999999999999999999999998765 899999999985 68899999999985 89999998
Q ss_pred CC
Q 000860 887 LG 888 (1250)
Q Consensus 887 ~~ 888 (1250)
++
T Consensus 219 ~~ 220 (356)
T PRK11650 219 PV 220 (356)
T ss_pred HH
Confidence 63
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=372.98 Aligned_cols=215 Identities=27% Similarity=0.396 Sum_probs=190.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 589999998874 2458999999999999999999999999999999999876 4589999999886
Q ss_pred Cc-ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 729 EQ-STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 729 ~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
.. ...+|.+|||+|+..++|++||+||+.|+...+ ..++++.+++++++++.++|.+..++.+. .||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~-----~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPG-----QLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChh-----hCCHHHH
Confidence 43 234678999999999999999999999986543 34556677889999999999998888775 4999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
|||+|||||+.+|++++||||||+||..++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999985 68899999999986 79999988
Q ss_pred CC
Q 000860 887 LG 888 (1250)
Q Consensus 887 ~~ 888 (1250)
++
T Consensus 219 ~~ 220 (353)
T TIGR03265 219 PQ 220 (353)
T ss_pred HH
Confidence 63
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=371.81 Aligned_cols=215 Identities=26% Similarity=0.414 Sum_probs=190.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.+||.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 589999998873 2458999999999999999999999999999999999876 4589999999886
Q ss_pred Ccc-cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 729 EQS-TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 729 ~~~-~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
... ..++.+|||+|+..++|++||+||+.|....+ ..++++.+++++++++.++|.+..++.+. .||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~-----~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVD-----QISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHH
Confidence 542 23578999999999999999999999987543 24556677889999999999998888775 4999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |+|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999985 68899999999985 78999888
Q ss_pred CC
Q 000860 887 LG 888 (1250)
Q Consensus 887 ~~ 888 (1250)
++
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 63
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=355.59 Aligned_cols=213 Identities=23% Similarity=0.356 Sum_probs=182.3
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5788888773 2358999999999999999999999999999999999876 358999999987543
Q ss_pred ------ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 731 ------STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 731 ------~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
..+++.++|++|++.+++.+||+||+.+...... ..+.++.+++++++++.++|.+..++.++ .|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPA-----ELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 2346679999999999999999999988754221 23444556778899999999887777775 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++...+|++++|++ |++++
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~ 217 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVA 217 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998764 899999999985 57788999999985 78888
Q ss_pred eCCC
Q 000860 884 GGKL 887 (1250)
Q Consensus 884 ~g~~ 887 (1250)
.|+.
T Consensus 218 ~g~~ 221 (235)
T cd03261 218 EGTP 221 (235)
T ss_pred ecCH
Confidence 8875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=329.06 Aligned_cols=217 Identities=27% Similarity=0.390 Sum_probs=190.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.+..+|+.++| ++++++++||+.|++||+++++|||||||||.+.++.|... +.+|.|.+||.++
T Consensus 4 ~L~a~~l~K~y-------------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~di 68 (243)
T COG1137 4 TLVAENLAKSY-------------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDI 68 (243)
T ss_pred EEEehhhhHhh-------------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCccc
Confidence 46677777665 35679999999999999999999999999999999999876 3589999999998
Q ss_pred Cccc----ccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQST----FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~~~----~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
+... .|.-+||+||++..|..+||+||+......+-. +....+++++++++++.+++.|+++..-.. |||
T Consensus 69 T~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~s-----LSG 142 (243)
T COG1137 69 TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAYS-----LSG 142 (243)
T ss_pred ccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcccc-----ccc
Confidence 7532 234589999999999999999999877666531 223346667789999999999999987654 999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEe
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 884 (1250)
|||||+-|||||+.+|+.++||||++|+||-+..+|+++++.++++|.-|++|-|... |+...+||.+++.+ |++...
T Consensus 143 GERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~ 220 (243)
T COG1137 143 GERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAE 220 (243)
T ss_pred chHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEec
Confidence 9999999999999999999999999999999999999999999999999999999986 79999999999996 799999
Q ss_pred CCCC
Q 000860 885 GKLG 888 (1250)
Q Consensus 885 g~~~ 888 (1250)
|+++
T Consensus 221 G~p~ 224 (243)
T COG1137 221 GSPE 224 (243)
T ss_pred CCHH
Confidence 9874
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=383.83 Aligned_cols=217 Identities=29% Similarity=0.448 Sum_probs=185.8
Q ss_pred eeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCcc
Q 000860 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 727 (1250)
Q Consensus 648 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 727 (1250)
..++|+||+|.|+.+ ++.+||+|+||+|+|||.+||+||||+||||+.++|..... +.+|+|.+||.|
T Consensus 464 G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~ 531 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVP 531 (716)
T ss_pred ceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCee
Confidence 479999999999865 35679999999999999999999999999999999998766 568999999999
Q ss_pred CCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH---HcCCcccccccccCCCCCc
Q 000860 728 KEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMS---LVELDSLRHALVGSPGSFG 801 (1250)
Q Consensus 728 ~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~---~l~l~~~~~~~v~~~~~~~ 801 (1250)
+++ ..+|++||+|.|||.+|. -||+|||.|+.. +.++++..+.++..-. ..++.+-.||.||+.+. .
T Consensus 532 i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~-q 604 (716)
T KOG0058|consen 532 ISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGS-Q 604 (716)
T ss_pred hhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCccc-c
Confidence 764 467899999999999995 699999999753 4455554433332211 23677788999998665 6
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEE
Q 000860 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRV 881 (1250)
Q Consensus 802 lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 881 (1250)
||||||||++|||||++||+||||||+||+||++++..|++.|.++.+ ++|||+++|+.+ +.+.+|+|+++++ |++
T Consensus 605 LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~-G~V 680 (716)
T KOG0058|consen 605 LSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK-GRV 680 (716)
T ss_pred ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC-CeE
Confidence 999999999999999999999999999999999999999999988764 699999999974 6899999999985 899
Q ss_pred EEeCCC
Q 000860 882 IYGGKL 887 (1250)
Q Consensus 882 ~~~g~~ 887 (1250)
+..|+.
T Consensus 681 ~E~G~h 686 (716)
T KOG0058|consen 681 VEMGTH 686 (716)
T ss_pred EecccH
Confidence 999974
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=333.98 Aligned_cols=216 Identities=27% Similarity=0.359 Sum_probs=181.8
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++.+|+++.++... ...++|+|||++|.+||++||+|+||||||||.++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCccc
Confidence 588999999886432 12369999999999999999999999999999999999876 3589999999875
Q ss_pred Ccc----cccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCc
Q 000860 729 EQS----TFARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL-RHALVGSPGSFG 801 (1250)
Q Consensus 729 ~~~----~~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~v~~~~~~~ 801 (1250)
... .+++.+.+|+||+ .+.|..||++.|.-+... .+.++.+ +++.++++.+||... .++.+ ..
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R~P-----~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDRRP-----HE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhcCc-----hh
Confidence 442 4677899999997 467999999988766543 2333333 348999999999754 44444 35
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 802 lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
||||||||++|||||+.+|++|+||||||+||+..+.+|++.|.++.++ +.|.|+++||.+ -+..+|||+++|++ |+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-Ce
Confidence 9999999999999999999999999999999999999999999999764 789999999975 47889999999986 79
Q ss_pred EEEeCCC
Q 000860 881 VIYGGKL 887 (1250)
Q Consensus 881 ~~~~g~~ 887 (1250)
++..++.
T Consensus 220 ivE~~~~ 226 (252)
T COG1124 220 IVEIGPT 226 (252)
T ss_pred EEEeech
Confidence 9999886
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=370.84 Aligned_cols=215 Identities=25% Similarity=0.368 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeE--EEEEECCc
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIE--GDIKISGY 726 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~--G~i~~~g~ 726 (1250)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 478999998874 23589999999999999999999999999999999998763 46 99999998
Q ss_pred cCCc-ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000860 727 PKEQ-STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 727 ~~~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgG 805 (1250)
++.. ...++.+|||+|++.++|.+||+||+.|+...+ ..++.+.+++++++++.++|.+..++.+.. ||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~-----LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPAQ-----LSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChhh-----CCHH
Confidence 8643 224577999999999999999999999986543 345566677899999999999998888764 9999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC--CCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT--GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999998776 799999999985 68889999999985 79999
Q ss_pred eCCCC
Q 000860 884 GGKLG 888 (1250)
Q Consensus 884 ~g~~~ 888 (1250)
.|+++
T Consensus 220 ~g~~~ 224 (362)
T TIGR03258 220 HGEPQ 224 (362)
T ss_pred EcCHH
Confidence 99863
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=366.81 Aligned_cols=215 Identities=26% Similarity=0.391 Sum_probs=188.7
Q ss_pred eeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCcc
Q 000860 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 727 (1250)
Q Consensus 648 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 727 (1250)
..++++|+++.++ ++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEE
Confidence 3689999999873 3469999999999999999999999999999999999876 358999999998
Q ss_pred CCc--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000860 728 KEQ--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 728 ~~~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgG 805 (1250)
... ...++.+||++|++.+++.+||+|++.+.+.++ ..+..+.+++++++++.++|.+..++.++. ||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~-----LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVSD-----LSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChhh-----CCHH
Confidence 643 235678999999999999999999998766543 123344556788899999999988888864 9999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+.+ ++.+.||++++|++ |++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 999999999999999999999999999999999999999999877999999999985 67889999999985 7999999
Q ss_pred CC
Q 000860 886 KL 887 (1250)
Q Consensus 886 ~~ 887 (1250)
+.
T Consensus 255 ~~ 256 (340)
T PRK13536 255 RP 256 (340)
T ss_pred CH
Confidence 86
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=346.27 Aligned_cols=215 Identities=25% Similarity=0.397 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++|+|+. .+.+|+|+|+.+++||.++|+|+||||||||+++|+|..++ .+|.|.++|.+.
T Consensus 3 ~i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~ 68 (235)
T COG1122 3 MIEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDT 68 (235)
T ss_pred eEEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeec
Confidence 4789999998853 25799999999999999999999999999999999998773 579999999986
Q ss_pred C----cccccceEEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000860 729 E----QSTFARISGYVEQEDV-HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 729 ~----~~~~~~~~~yv~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lS 803 (1250)
. ...+++.+|||+|++. .+..-||.|.+.|+..-. ..+.++.+++++++++.+|+.+.+++.+. .||
T Consensus 69 ~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p~-----~LS 140 (235)
T COG1122 69 SSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPPF-----NLS 140 (235)
T ss_pred cchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCcc-----ccC
Confidence 5 3457889999999974 455789999999986432 45667789999999999999999888775 499
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 882 (1250)
|||||||+||.+|+.+|++|+|||||||||+..+..+++.++++.++ |+|||+++|+.. .+...+|++++|++ |+++
T Consensus 141 GGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~ 218 (235)
T COG1122 141 GGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKIL 218 (235)
T ss_pred CcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEe
Confidence 99999999999999999999999999999999999999999999877 689999999975 57788999999986 7999
Q ss_pred EeCCC
Q 000860 883 YGGKL 887 (1250)
Q Consensus 883 ~~g~~ 887 (1250)
+.|++
T Consensus 219 ~~g~p 223 (235)
T COG1122 219 ADGDP 223 (235)
T ss_pred ecCCH
Confidence 99985
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=368.09 Aligned_cols=217 Identities=26% Similarity=0.387 Sum_probs=188.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.+. ++++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 2 ~L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 66 (353)
T PRK10851 2 SIEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDV 66 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 478899998773 2458999999999999999999999999999999999876 3579999999986
Q ss_pred Cc-ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000860 729 EQ-STFARISGYVEQEDVHSPQVTIEESLWFSANLRLP-KEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQ 806 (1250)
Q Consensus 729 ~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGe 806 (1250)
.. ...++.+|||+|++.++|.+||+||+.|....... ...+.++.+++++++++.++|.+..++.+. .|||||
T Consensus 67 ~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgGq 141 (353)
T PRK10851 67 SRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPA-----QLSGGQ 141 (353)
T ss_pred CCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHH
Confidence 43 22356799999999999999999999998653211 123455667789999999999988888775 499999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 807 rqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++...+|++++|++ |++++.|
T Consensus 142 ~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g 219 (353)
T PRK10851 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAG 219 (353)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 99999999999999999999999999999999999999998765 899999999985 68889999999985 7999988
Q ss_pred CC
Q 000860 886 KL 887 (1250)
Q Consensus 886 ~~ 887 (1250)
++
T Consensus 220 ~~ 221 (353)
T PRK10851 220 TP 221 (353)
T ss_pred CH
Confidence 86
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=347.12 Aligned_cols=210 Identities=30% Similarity=0.444 Sum_probs=178.4
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++ ++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 5778888763 2458999999999999999999999999999999999876 358999999987643
Q ss_pred -ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000860 731 -STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKR 809 (1250)
Q Consensus 731 -~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr 809 (1250)
...++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+++.+..++.+.+ ||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPHE-----LSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHH
Confidence 223567999999998899999999998865432 123344556788999999998887777654 99999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 810 ~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999999999999876 4899999999985 57788999999986 6777654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=348.08 Aligned_cols=208 Identities=26% Similarity=0.362 Sum_probs=177.3
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++. +.+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehh
Confidence 678999988742 12359999999999999999999999999999999999866 35899999998753
Q ss_pred cc------cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000860 730 QS------TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 730 ~~------~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lS 803 (1250)
.. .+++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+++.+..++.++ .||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPM-----QLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCC
Confidence 21 24567999999999999999999999875532 22334455678999999999888777765 499
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++...+|++++|.+ |+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999998777999999999985 56678999999986 44
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=368.47 Aligned_cols=214 Identities=25% Similarity=0.362 Sum_probs=188.8
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.+. ++++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 589999998873 2458999999999999999999999999999999999876 3589999999986
Q ss_pred Cc-ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 729 EQ-STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 729 ~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
.. ...++.+|||+|++.++|++||+||+.|+...+ ..++.+.+++++++++.++|.+..++.+. .||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~-----~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPH-----QLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCCHHHH
Confidence 43 234577999999999999999999999986543 23455667788999999999998888875 4999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
|||+|||||+.+|++|+|||||||||..++..+.+.|+++.++ |.|+|++||++. ++..++|++++|.+ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998764 899999999985 68899999999985 89999888
Q ss_pred C
Q 000860 887 L 887 (1250)
Q Consensus 887 ~ 887 (1250)
+
T Consensus 229 ~ 229 (375)
T PRK09452 229 P 229 (375)
T ss_pred H
Confidence 6
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=332.39 Aligned_cols=194 Identities=25% Similarity=0.392 Sum_probs=169.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHccCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~ 77 (1250)
+++++|||||||||+||+|.++++|+ +|+|.+||.++.+. .+|+.+|||-|+..+||++||.|||.+-..+.+.
T Consensus 29 f~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w 105 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGW 105 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCC
Confidence 46899999999999999999999975 99999999998653 5789999999999999999999999987766553
Q ss_pred CcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHH
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA 157 (1250)
..+. .+.+++++|+.+||+.. ...+++.++|||||+|||.+|
T Consensus 106 ~k~~-----------------------------------i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRVGv~ 147 (309)
T COG1125 106 DKER-----------------------------------IKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRVGVA 147 (309)
T ss_pred CHHH-----------------------------------HHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHHHHH
Confidence 3210 12247899999999752 122345567999999999999
Q ss_pred HHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 158 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
|||+.+|+|+|+|||+++|||.++.++.+.++++.++.++|+|++ +|+.+|+++++|||.+|++|+++..++|+++..
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfV-THDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFV-THDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEE-ecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999999988889999987 577999999999999999999999999999864
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=345.53 Aligned_cols=215 Identities=27% Similarity=0.413 Sum_probs=181.7
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 70 (220)
T cd03293 2 EVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG 70 (220)
T ss_pred eEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc
Confidence 578888877421 012469999999999999999999999999999999999865 358999999987642
Q ss_pred ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH
Q 000860 731 STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRL 810 (1250)
Q Consensus 731 ~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~ 810 (1250)
.++.++|++|++.+++.+||+||+.+....+ ..+.+...+.++++++.+++.+..++.++ .||||||||+
T Consensus 71 --~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl 140 (220)
T cd03293 71 --PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPH-----QLSGGMRQRV 140 (220)
T ss_pred --ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHH
Confidence 4567999999998888899999998875433 12334445678899999999887777765 4999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeec-CcEEEEeCCC
Q 000860 811 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKR-GGRVIYGGKL 887 (1250)
Q Consensus 811 ~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gg~~~~~g~~ 887 (1250)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||+++|++. ++...+|++++|++ +|+++..+++
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999999999999864 4899999999985 57788999999984 4888888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=343.61 Aligned_cols=191 Identities=27% Similarity=0.364 Sum_probs=167.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc------cccceEEeeccccccCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~ 74 (1250)
+.+|+|+||||||||++++.++..|+ +|+|.++|.++... ..|+.||+++|+..++...||.||+.|..++
T Consensus 34 I~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLei 110 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLEL 110 (339)
T ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhh
Confidence 47899999999999999999999875 99999999887543 3578899999999999999999999999887
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 154 (1250)
.+.++. + .+.+|.++|+.+||++..+.... +|||||||||
T Consensus 111 ag~~k~-----------e------------------------i~~RV~elLelVgL~dk~~~yP~-----qLSGGQKQRV 150 (339)
T COG1135 111 AGVPKA-----------E------------------------IKQRVAELLELVGLSDKADRYPA-----QLSGGQKQRV 150 (339)
T ss_pred cCCCHH-----------H------------------------HHHHHHHHHHHcCChhhhccCch-----hcCcchhhHH
Confidence 653211 0 12358889999999998886654 5999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhH
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 155 ~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~ 234 (1250)
+|||||+.+|+|||+|||||+|||.+...|++.|+++.++.|.|+++++|+ ++-+-+.||||.+|++|++++.|+..++
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHE-m~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHE-MEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999999999999999999987554 6667779999999999999999999987
Q ss_pred H
Q 000860 235 L 235 (1250)
Q Consensus 235 ~ 235 (1250)
.
T Consensus 230 F 230 (339)
T COG1135 230 F 230 (339)
T ss_pred h
Confidence 4
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=343.32 Aligned_cols=209 Identities=24% Similarity=0.440 Sum_probs=179.0
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 5788888763 2358999999999999999999999999999999999865 358999999987643
Q ss_pred ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH
Q 000860 731 STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRL 810 (1250)
Q Consensus 731 ~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~ 810 (1250)
..++.++|++|++.+++.+||+||+.+....+ ..+..+..+.++++++.+++.+..++.+. .||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVE-----ELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHh-----hCCHHHHHHH
Confidence 34567999999999999999999998876543 22334455678899999999887777664 4999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 811 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 811 ~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|.+ |++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999998777899999999975 56778999999985 6777653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=366.10 Aligned_cols=215 Identities=25% Similarity=0.397 Sum_probs=188.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 589999998773 2358999999999999999999999999999999999876 4589999999886
Q ss_pred Cc-ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 729 EQ-STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 729 ~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
.. ...++.+|||+|++.++|++||.||+.|+...+ ..++++.+++++++++.++|.+..++.+. .||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~-----~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPH-----QLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHH
Confidence 43 235678999999999999999999999986543 23456677889999999999988888775 4999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
|||+|||||+.+|++|+|||||++||..++..+.+.|+++.+ .|.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 999999999999999999999999999999999999998865 4899999999985 68899999999985 79999998
Q ss_pred CC
Q 000860 887 LG 888 (1250)
Q Consensus 887 ~~ 888 (1250)
++
T Consensus 234 ~~ 235 (377)
T PRK11607 234 PE 235 (377)
T ss_pred HH
Confidence 63
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=360.68 Aligned_cols=214 Identities=26% Similarity=0.395 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 588999998873 2458999999999999999999999999999999999875 3589999999875
Q ss_pred Cc--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000860 729 EQ--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQ 806 (1250)
Q Consensus 729 ~~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGe 806 (1250)
.. ...++.+||++|++.+++.+||+|++.+..... ..+..+.+++++++++.++|.+..++.++. |||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~-----LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVAL-----LSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchhh-----CCHHH
Confidence 32 234677999999999999999999998755432 233444556778899999999888887754 99999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCC
Q 000860 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 807 rqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++...||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999985 67788999999985 78999988
Q ss_pred C
Q 000860 887 L 887 (1250)
Q Consensus 887 ~ 887 (1250)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 6
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=345.30 Aligned_cols=213 Identities=28% Similarity=0.386 Sum_probs=182.1
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecC
Confidence 36788888763 2458999999999999999999999999999999999865 35899999998753
Q ss_pred c--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 730 Q--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 730 ~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
. ...++.++|++|++.+++.+||+|++.+....+ ..+.++.+++++++++.++|.+..++.++. ||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVKT-----YSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhh-----CCHHHH
Confidence 2 234567999999999999999999998876543 223344556789999999999887877754 999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|.+ |+++..|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 215 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGT 215 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 9999999999999999999999999999999999999998776 899999999985 57788999999985 78888876
Q ss_pred C
Q 000860 887 L 887 (1250)
Q Consensus 887 ~ 887 (1250)
.
T Consensus 216 ~ 216 (220)
T cd03265 216 P 216 (220)
T ss_pred h
Confidence 4
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=342.75 Aligned_cols=210 Identities=27% Similarity=0.401 Sum_probs=179.0
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCc
Confidence 5788888763 2358999999999999999999999999999999999865 358999999987643
Q ss_pred c-cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000860 731 S-TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKR 809 (1250)
Q Consensus 731 ~-~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr 809 (1250)
. ..++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+|+.+..+..++. ||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPKQ-----LSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChhh-----CCHHHHHH
Confidence 2 23457999999998888999999998875432 233445566788999999998887877754 99999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 810 ~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++...+|++++|.+ |++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999998764 899999999974 57778999999985 7877765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=366.59 Aligned_cols=215 Identities=27% Similarity=0.398 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478999998873 2458999999999999999999999999999999999876 3589999999876
Q ss_pred Cc-ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 729 EQ-STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 729 ~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
.. ...++.+|||+|++.++|.+||+||+.|....+ ..+.++.+++++++++.++|.+..++.++. ||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~-----LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhh-----CCHHHH
Confidence 43 223567999999999999999999999876543 234455667899999999999888887754 999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++...+|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998764 899999999985 67889999999985 79999888
Q ss_pred CC
Q 000860 887 LG 888 (1250)
Q Consensus 887 ~~ 888 (1250)
++
T Consensus 218 ~~ 219 (369)
T PRK11000 218 PL 219 (369)
T ss_pred HH
Confidence 63
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=364.04 Aligned_cols=217 Identities=24% Similarity=0.336 Sum_probs=186.0
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|++++++.. ..++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 6889999987421 013469999999999999999999999999999999999876 35899999998764
Q ss_pred cc------cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000860 730 QS------TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 730 ~~------~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lS 803 (1250)
.. .+++.+||++|++.+++.+||+||+.+..... +.+.++.+++++++++.+||.+..++.++ .||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPA-----QLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCC
Confidence 31 23567999999999999999999999876543 23445556778999999999988887765 499
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 882 (1250)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999985 57788999999985 7899
Q ss_pred EeCCC
Q 000860 883 YGGKL 887 (1250)
Q Consensus 883 ~~g~~ 887 (1250)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 98875
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=361.35 Aligned_cols=202 Identities=29% Similarity=0.440 Sum_probs=178.2
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc--ccccceEEEEcCCCCCCCCCC
Q 000860 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ--STFARISGYVEQEDVHSPQVT 751 (1250)
Q Consensus 674 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~q~~~~~~~lt 751 (1250)
++++|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 3569999999999999999999999999999999999876 358999999987643 234667999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000860 752 IEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 831 (1250)
Q Consensus 752 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsg 831 (1250)
|+||+.+.+.++ +.+..+.+++++++++.++|.+..++.++. ||||||||++||+||+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVGT-----YSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876653 233445566789999999999888888764 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 832 LDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 832 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
||+.++..+.+.|++++++|+|||+++|++. ++...||++++|++ |++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999877999999999985 67789999999985 799998885
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=346.92 Aligned_cols=217 Identities=29% Similarity=0.395 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 478999998873 2358999999999999999999999999999999999865 3589999999876
Q ss_pred Ccc-cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000860 729 EQS-TFARISGYVEQEDVHSPQVTIEESLWFSANLRLP-KEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQ 806 (1250)
Q Consensus 729 ~~~-~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGe 806 (1250)
... ..++.++|++|++.+++.+||+||+.+....+.. ......+..++++++++.++|.+..++.++ .|||||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA-----QLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHH
Confidence 432 2345799999999999899999999886543211 001233445678899999999887777765 499999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 807 rqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++...+|++++|++ |++++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99999999999999999999999999999999999999999765 899999999985 57788999999985 7888888
Q ss_pred CC
Q 000860 886 KL 887 (1250)
Q Consensus 886 ~~ 887 (1250)
+.
T Consensus 220 ~~ 221 (239)
T cd03296 220 TP 221 (239)
T ss_pred CH
Confidence 75
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=343.67 Aligned_cols=215 Identities=29% Similarity=0.446 Sum_probs=182.1
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++.. .+..++|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcc
Confidence 5788999877421 012269999999999999999999999999999999999866 35899999998764
Q ss_pred c--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 730 Q--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 730 ~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
. ..+++.++|++|++.+++.+||+||+.+....+ ..+.++..++++++++.+|+.+..++.++. ||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVGG-----FSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhhh-----cCHHHH
Confidence 3 234678999999999999999999998765433 233445567789999999998887777654 999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++...+|++++|++ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999985 57788999999986 6776653
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=362.49 Aligned_cols=203 Identities=25% Similarity=0.326 Sum_probs=179.6
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCcc---cc----cceEEEEcCCCCC
Q 000860 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQS---TF----ARISGYVEQEDVH 746 (1250)
Q Consensus 674 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~~----~~~~~yv~q~~~~ 746 (1250)
.+.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... .+ ++.+|||+|++.+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 4568999999999999999999999999999999999876 4589999999986532 22 5689999999999
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000860 747 SPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMD 826 (1250)
Q Consensus 747 ~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lD 826 (1250)
+|++||+||+.|...+. +.+.++..+++.++++.+||.+..++.++. |||||||||+|||||+.+|+||+||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~-----LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPDE-----LSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999986543 345566778899999999999888887764 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCCC
Q 000860 827 EPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLG 888 (1250)
Q Consensus 827 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 888 (1250)
|||++||+.++..+++.++++.++ |+|||++||+.. ++...+|++++|.+ |+++..|+++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~~ 215 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTPD 215 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCHH
Confidence 999999999999999999998654 899999999975 57889999999985 7999998863
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=357.05 Aligned_cols=213 Identities=24% Similarity=0.421 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++++++ ++.+|+|+||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~ 66 (301)
T TIGR03522 2 SIRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDV 66 (301)
T ss_pred EEEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEc
Confidence 478999998873 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Cc--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000860 729 EQ--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQ 806 (1250)
Q Consensus 729 ~~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGe 806 (1250)
.. ...++.+||++|++.+++.+||.|++.+.+.++ +.+.++..++++++++.+||.+..++.++. |||||
T Consensus 67 ~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~ 138 (301)
T TIGR03522 67 LQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIGQ-----LSKGY 138 (301)
T ss_pred ccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchhh-----CCHHH
Confidence 43 234667999999999999999999999877654 233445566789999999999988888754 99999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCC
Q 000860 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 807 rqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 139 ~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~ 215 (301)
T TIGR03522 139 RQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKK 215 (301)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999865 799999999985 68889999999985 89999998
Q ss_pred C
Q 000860 887 L 887 (1250)
Q Consensus 887 ~ 887 (1250)
.
T Consensus 216 ~ 216 (301)
T TIGR03522 216 L 216 (301)
T ss_pred H
Confidence 6
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=374.30 Aligned_cols=216 Identities=30% Similarity=0.473 Sum_probs=181.0
Q ss_pred CCCCeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEE
Q 000860 644 PFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKI 723 (1250)
Q Consensus 644 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~ 723 (1250)
+.....++++|++|.|... +..+|+|+|++|+|||.+||+|+||||||||+|+|+|..+ +..|+|.+
T Consensus 466 ~~~~g~I~~~nvsf~y~~~-----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~ 532 (709)
T COG2274 466 PKLQGEIEFENVSFRYGPD-----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILL 532 (709)
T ss_pred cccCceEEEEEEEEEeCCC-----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEE
Confidence 3344579999999998642 3469999999999999999999999999999999999877 46899999
Q ss_pred CCccCCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHc-------CCccccccc
Q 000860 724 SGYPKEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLV-------ELDSLRHAL 793 (1250)
Q Consensus 724 ~g~~~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-------~l~~~~~~~ 793 (1250)
||.+++. ..+|+++|||+||+.+| +-|++||+.++. | ..+.++. .++++.. .+..-.||.
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~----p-~~~~e~i----~~A~~~ag~~~fI~~lP~gy~t~ 602 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGN----P-EATDEEI----IEAAQLAGAHEFIENLPMGYDTP 602 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhh-cCcHHHHHhcCC----C-CCCHHHH----HHHHHHhCcHHHHHhcccccccc
Confidence 9998653 57899999999999887 569999998753 2 2333333 2233322 344556788
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhccee
Q 000860 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELL 873 (1250)
Q Consensus 794 v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~ 873 (1250)
+|+.+ .+||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++. +|+|+|+++|+++ +.+.+|+|+
T Consensus 603 v~E~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIi 678 (709)
T COG2274 603 VGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRII 678 (709)
T ss_pred cccCC-CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEE
Confidence 88754 4799999999999999999999999999999999999999999999985 5899999999985 689999999
Q ss_pred eeecCcEEEEeCCC
Q 000860 874 LMKRGGRVIYGGKL 887 (1250)
Q Consensus 874 ~l~~gg~~~~~g~~ 887 (1250)
+|++ |+++..|+.
T Consensus 679 Vl~~-Gkiv~~gs~ 691 (709)
T COG2274 679 VLDQ-GKIVEQGSH 691 (709)
T ss_pred EccC-CceeccCCH
Confidence 9985 899999996
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=346.50 Aligned_cols=215 Identities=27% Similarity=0.373 Sum_probs=180.7
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 5678887763 2358999999999999999999999999999999999875 358999999987643
Q ss_pred c---c-ccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCC-------CCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000860 731 S---T-FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKE-------ISKDQRHEFVEEVMSLVELDSLRHALVGSPGS 799 (1250)
Q Consensus 731 ~---~-~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~-------~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~ 799 (1250)
. . .++.++|++|++.+++.+||+|++.+......... ....+..++++++++.+|+.+..++.++
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 142 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG---- 142 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChh----
Confidence 2 1 23568999999999999999999988754321110 0133445678899999999887777765
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++...+|++++|++ |
T Consensus 143 -~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G 219 (236)
T cd03219 143 -ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-G 219 (236)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-C
Confidence 49999999999999999999999999999999999999999999998777999999999985 57788999999985 7
Q ss_pred EEEEeCCC
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
++++.|+.
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 88888875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=345.49 Aligned_cols=212 Identities=28% Similarity=0.394 Sum_probs=180.9
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 5788888763 2358999999999999999999999999999999999876 357999999987543
Q ss_pred c---c-ccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000860 731 S---T-FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQ 806 (1250)
Q Consensus 731 ~---~-~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGe 806 (1250)
. . .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+++.+..++.++ .|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKAS-----SLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHH
Confidence 1 1 2356899999999999999999998865432 12334455678899999999887777765 499999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCC
Q 000860 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 807 rqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++...+|++++|++ |++++.|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 216 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGT 216 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeC
Confidence 99999999999999999999999999999999999999999877999999999985 68889999999985 78888887
Q ss_pred C
Q 000860 887 L 887 (1250)
Q Consensus 887 ~ 887 (1250)
.
T Consensus 217 ~ 217 (232)
T cd03218 217 P 217 (232)
T ss_pred H
Confidence 5
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=343.12 Aligned_cols=209 Identities=30% Similarity=0.435 Sum_probs=174.7
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++... +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~---------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGGG---------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCCC---------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehh
Confidence 35788888774210 11469999999999999999999999999999999999876 35899999998764
Q ss_pred ccc-------ccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000860 730 QST-------FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGL 802 (1250)
Q Consensus 730 ~~~-------~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~l 802 (1250)
... .++.++|++|++.+++.+||+|++.+....+ .....+.+++++++++.+||.+..++.++ .|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYPS-----EL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcChh-----hc
Confidence 311 2457999999999999999999999876543 12333445678899999999887777765 49
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 803 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 803 SgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++ ..+|++++|++ |+
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 99999999999999999999999999999999999999999999976 5899999999985 34 48999999986 44
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=339.08 Aligned_cols=206 Identities=28% Similarity=0.415 Sum_probs=176.4
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 5788888763 2469999999999999999999999999999999999876 458999999987643
Q ss_pred -ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000860 731 -STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKR 809 (1250)
Q Consensus 731 -~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr 809 (1250)
...++.++|++|++.+++.+||+||+.+....+ .. .+++++++++.+++.+..++.++. ||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKVKG-----FSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhHhh-----CCHHHHHH
Confidence 234567999999999999999999998875432 11 134578899999998887777654 99999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 810 ~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++...+|++++|++ |++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999998777899999999985 56678999999985 7877654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=340.55 Aligned_cols=221 Identities=35% Similarity=0.640 Sum_probs=182.7
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEEEECCccC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYPK 728 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~~ 728 (1250)
+.|+|+++.++.. +..+++|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.++
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 5788999877431 0135799999999999999999999999999999999997651 13589999999887
Q ss_pred CcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEE-VMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~-~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
....+++.++|++|++.+++.+||+||+.+......+.....+...+++++ .++.+++.+..++.++ .||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVK-----GISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccccc-----CcCHHHH
Confidence 554567789999999999999999999998765433222222223334555 8889999877776664 4999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|.|+|+++|++..++.+.+|++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998777899999999985468899999999985 7887765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=363.85 Aligned_cols=218 Identities=26% Similarity=0.352 Sum_probs=186.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 478999998873 3469999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLP-KEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
.. ..+++.+|||+|++.+++.+||+|++.+....... .....++.+++++++++.+++.+..++.+. .|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~-----~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT-----SLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChh-----hCCH
Confidence 43 34567899999999998999999999876422110 011123445678999999999988888775 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEe
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 884 (1250)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999985 57789999999985 788899
Q ss_pred CCCC
Q 000860 885 GKLG 888 (1250)
Q Consensus 885 g~~~ 888 (1250)
|+++
T Consensus 221 G~~~ 224 (402)
T PRK09536 221 GPPA 224 (402)
T ss_pred cCHH
Confidence 9864
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=343.20 Aligned_cols=213 Identities=25% Similarity=0.330 Sum_probs=177.7
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC-----CCCeeEEEEEECC
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRK-----TGGYIEGDIKISG 725 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~-----~~~~~~G~i~~~g 725 (1250)
+++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDG 66 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECC
Confidence 5788888763 236899999999999999999999999999999999976 4 4689999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSF 800 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~ 800 (1250)
.++.. ..+++.++|++|++.++ .+||+||+.+....+. ....++.+++++++++.+|+.+..+..+. ..
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87542 23456799999998887 7999999988754321 11222345678899999999877665530 13
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||+++|++. ++...+|++++|.+ |+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~ 217 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GR 217 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CE
Confidence 59999999999999999999999999999999999999999999999776 99999999985 57778999999985 78
Q ss_pred EEEeCCC
Q 000860 881 VIYGGKL 887 (1250)
Q Consensus 881 ~~~~g~~ 887 (1250)
+++.|+.
T Consensus 218 i~~~g~~ 224 (227)
T cd03260 218 LVEFGPT 224 (227)
T ss_pred EEEecCc
Confidence 8888875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=339.29 Aligned_cols=206 Identities=27% Similarity=0.375 Sum_probs=175.8
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~------------~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYPG------------GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeCC------------CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 578899887631 2458999999999999999999999999999999999865 35899999998764
Q ss_pred cc------cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000860 730 QS------TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 730 ~~------~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lS 803 (1250)
.. .+++.++|++|++.+++.+||+||+.+....+ ....+..+++++++++.+++.+..++.+. .||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPE-----QLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCC
Confidence 31 24567999999999999999999998875432 12334455678899999999877777665 499
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++...+|++++|++|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999998777999999999985 577789999999853
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=340.87 Aligned_cols=214 Identities=26% Similarity=0.407 Sum_probs=181.2
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++. .++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 367888887632 12469999999999999999999999999999999999866 35899999998764
Q ss_pred c--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 730 Q--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 730 ~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
. ..+++.++|++|++.+++.+||+||+.+....+ ..+.++..++++++++.++|.+..++.++ .||||||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRAR-----TLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHH
Confidence 3 234567999999999888999999998875443 12334445678899999999887777765 4999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
||++|||+|+.+|++++|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+...+|++++|.+ |++++.|+.
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999999875 699999999985 46678999999985 788888875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=321.80 Aligned_cols=214 Identities=28% Similarity=0.398 Sum_probs=182.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++..|. +.++|+|||+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++
T Consensus 3 mL~v~~l~~~YG-------------~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~di 67 (237)
T COG0410 3 MLEVENLSAGYG-------------KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDI 67 (237)
T ss_pred ceeEEeEeeccc-------------ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeec
Confidence 478899987773 4579999999999999999999999999999999999876 3489999999997
Q ss_pred Cc----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCC
Q 000860 729 EQ----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVE-LDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 729 ~~----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~v~~~~~~~lS 803 (1250)
.. ...++-++||||....||.+||+|||..++..+.. ++..+..++++.+.+- |.+.++++.|+ ||
T Consensus 68 t~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~-----LS 138 (237)
T COG0410 68 TGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGT-----LS 138 (237)
T ss_pred CCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccC-----CC
Confidence 64 23466799999999999999999999988654421 1122222677887774 67777777775 99
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 882 (1250)
|||+|.++|||||+++|++|+|||||.||-|.-..+|.+.|++++++ |.||+++-+... ...+.+||.++|.+ |+++
T Consensus 139 GGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv 216 (237)
T COG0410 139 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIV 216 (237)
T ss_pred hHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEE
Confidence 99999999999999999999999999999999999999999999866 779999888764 47789999999985 8999
Q ss_pred EeCCCC
Q 000860 883 YGGKLG 888 (1250)
Q Consensus 883 ~~g~~~ 888 (1250)
+.|+.+
T Consensus 217 ~~G~~~ 222 (237)
T COG0410 217 LSGTAA 222 (237)
T ss_pred EecCHH
Confidence 999964
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=351.31 Aligned_cols=219 Identities=24% Similarity=0.359 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+... ...+++|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13637 2 SIKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 378999999874210 012469999999999999999999999999999999999876 3589999999886
Q ss_pred Cc-----ccccceEEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCC
Q 000860 729 EQ-----STFARISGYVEQEDV-HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD--SLRHALVGSPGSF 800 (1250)
Q Consensus 729 ~~-----~~~~~~~~yv~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~--~~~~~~v~~~~~~ 800 (1250)
.. ...++.+|||+|++. .+...||+|++.|..... +.++++..++++++++.+||. +..++.+.
T Consensus 72 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~----- 143 (287)
T PRK13637 72 TDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSPF----- 143 (287)
T ss_pred CCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCcc-----
Confidence 43 134678999999963 334579999999865432 345566667889999999997 55666654
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++...+|++++|++ |
T Consensus 144 ~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G 221 (287)
T PRK13637 144 ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-G 221 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 59999999999999999999999999999999999999999999999765 899999999974 56788999999986 7
Q ss_pred EEEEeCCC
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (287)
T PRK13637 222 KCELQGTP 229 (287)
T ss_pred EEEEECCH
Confidence 88888875
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=340.18 Aligned_cols=217 Identities=26% Similarity=0.362 Sum_probs=181.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++.. ...+++|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 48899999887421 012469999999999999999999999999999999999865 4589999999876
Q ss_pred Cccc------c-cceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000860 729 EQST------F-ARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFG 801 (1250)
Q Consensus 729 ~~~~------~-~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~ 801 (1250)
.... . ++.++|++|++.+++.+||+||+.+..... ....++.+++++++++.+||.+..++.+. .
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPS-----E 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----h
Confidence 4311 2 256999999998899999999999875432 22334455678999999999887777664 4
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 802 lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|+++ ++ ..+|++++|.+ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~-~~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LA-KRMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999875 5899999999975 34 45689999975 78
Q ss_pred EEEeCCC
Q 000860 881 VIYGGKL 887 (1250)
Q Consensus 881 ~~~~g~~ 887 (1250)
++..|+.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 8888774
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=343.70 Aligned_cols=217 Identities=26% Similarity=0.361 Sum_probs=182.8
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5788998876421 011369999999999999999999999999999999999876 35799999998764
Q ss_pred cc------cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000860 730 QS------TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 730 ~~------~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lS 803 (1250)
.. ..++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.+++.+..++.+. .||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYPA-----QLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcChh-----hCC
Confidence 31 23567999999999999999999998875433 12334455678899999999887777664 499
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 882 (1250)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|.+ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999975 56778999999985 7888
Q ss_pred EeCCC
Q 000860 883 YGGKL 887 (1250)
Q Consensus 883 ~~g~~ 887 (1250)
..|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 88874
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=338.57 Aligned_cols=206 Identities=26% Similarity=0.378 Sum_probs=175.3
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYPN------------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeCC------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 57888887631 2468999999999999999999999999999999999865 358999999987542
Q ss_pred ------ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 731 ------STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 731 ------~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
..+++.++|++|++.+++.+|++||+.+....+ ..+.++..++++++++.+++.+..++.++ .|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALPA-----ELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----hcCH
Confidence 124567999999999999999999998875432 12344455678899999999887777765 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++...+|++++|++ |+
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999999999999999999999999998777999999999984 56678999999985 54
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=350.97 Aligned_cols=217 Identities=25% Similarity=0.354 Sum_probs=181.9
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.|+... ...+.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 68999999885210 012359999999999999999999999999999999999876 35899999998863
Q ss_pred c-------ccccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000860 730 Q-------STFARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHALVGSPGS 799 (1250)
Q Consensus 730 ~-------~~~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~ 799 (1250)
. ..+++.+|||+|++ .++ ..||.|++.|..... +.+.++.++++.++++.++|. +..++.+.
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~---- 143 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLF-EETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSPF---- 143 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcc-cchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCcc----
Confidence 1 23467899999986 444 469999999875432 234556677889999999996 45666554
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++...+|++++|++ |
T Consensus 144 -~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 144 -ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred -cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 59999999999999999999999999999999999999999999999877999999999984 57788999999985 7
Q ss_pred EEEEeCCC
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
++++.|++
T Consensus 221 ~i~~~g~~ 228 (288)
T PRK13643 221 HIISCGTP 228 (288)
T ss_pred EEEEECCH
Confidence 99999986
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=342.84 Aligned_cols=214 Identities=25% Similarity=0.395 Sum_probs=182.4
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 57889988763 2458999999999999999999999999999999999865 45899999998764
Q ss_pred c-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 730 Q-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 730 ~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
. ..+++.++|++|++.+++.+||+||+.+..... .....++.++++.++++.+|+.+..+..+. .|||
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYPS-----ELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcChh-----hcCH
Confidence 2 234567999999998899999999998764211 122344456678899999999887777664 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEe
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 884 (1250)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++...+|++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999777999999999985 56678999999985 788888
Q ss_pred CCC
Q 000860 885 GKL 887 (1250)
Q Consensus 885 g~~ 887 (1250)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 875
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=345.72 Aligned_cols=216 Identities=26% Similarity=0.331 Sum_probs=178.7
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccc
Confidence 57788877631 1468999999999999999999999999999999999865 357999999987643
Q ss_pred ------ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000860 731 ------STFARISGYVEQEDVHSPQVTIEESLWFSANLRL-----PKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGS 799 (1250)
Q Consensus 731 ------~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~-----~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~ 799 (1250)
...++.++|++|++.+++.+||+||+.+...... ......+...++++++++.+++.+..++.+.
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 143 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD---- 143 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc----
Confidence 1245679999999999999999999987532110 0011122345668889999999877777664
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|.+
T Consensus 144 -~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~- 220 (241)
T cd03256 144 -QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD- 220 (241)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 49999999999999999999999999999999999999999999998764 899999999985 57779999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|++++.|+.
T Consensus 221 G~i~~~~~~ 229 (241)
T cd03256 221 GRIVFDGPP 229 (241)
T ss_pred CEEEeecCH
Confidence 788888875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=343.47 Aligned_cols=212 Identities=28% Similarity=0.393 Sum_probs=180.8
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67889998763 2358999999999999999999999999999999999865 35799999998764
Q ss_pred cccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000860 730 QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKR 809 (1250)
Q Consensus 730 ~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr 809 (1250)
. .++.++|++|++.+++.+||+||+.+....+ .....+.+++++++++.++|.+..++.++ .||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-----QLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChh-----hCCHHHHHH
Confidence 3 2345899999998899999999998765432 22344455678999999999887777664 499999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeec-CcEEEEeCCC
Q 000860 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKR-GGRVIYGGKL 887 (1250)
Q Consensus 810 ~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gg~~~~~g~~ 887 (1250)
++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++...+|++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999985 57788999999984 5888888765
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=337.30 Aligned_cols=191 Identities=29% Similarity=0.412 Sum_probs=163.7
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCC-CCCCCCHH
Q 000860 675 LQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDV-HSPQVTIE 753 (1250)
Q Consensus 675 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~-~~~~ltv~ 753 (1250)
+++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.....++.++|++|++. .++.+||+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 468999999999999999999999999999999999876 458999999988654445667999999974 34467999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000860 754 ESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833 (1250)
Q Consensus 754 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD 833 (1250)
||+.+..... .. ..++++++++.++|.+..++.++ .||||||||++|||+|+.+|++++|||||+|||
T Consensus 91 e~l~~~~~~~-----~~--~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL-----DA--GNEQAETVLKDLDLYALKERHPL-----SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc-----Cc--cHHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998764321 11 12457899999999988887775 499999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEE
Q 000860 834 ARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRV 881 (1250)
Q Consensus 834 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 881 (1250)
+.++..+.+.|++++++|+|||+++|+++ ++...+|++++|++ |++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i 204 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAI 204 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999777999999999985 56678999999986 565
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=319.84 Aligned_cols=213 Identities=24% Similarity=0.433 Sum_probs=195.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.+++++|++++ +++++++|+||.++||++++++|||||||||++++|.|... +.+|.|.++|.++
T Consensus 2 ~L~ie~vtK~F-------------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~ 66 (300)
T COG4152 2 ALEIEGVTKSF-------------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPL 66 (300)
T ss_pred ceEEecchhcc-------------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcch
Confidence 46788888766 35679999999999999999999999999999999999887 4589999999998
Q ss_pred CcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000860 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerq 808 (1250)
+. ..+.+|||+|.+.-++|.+||.|.|.|-+.|+ ++++++.++.++.+++.+++......++.+ ||.|++|
T Consensus 67 ~~-~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~-----LSKGnqQ 137 (300)
T COG4152 67 SQ-EIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIKE-----LSKGNQQ 137 (300)
T ss_pred hh-hhhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHHH-----hhhhhhH
Confidence 65 34667999999999999999999999999987 678888999999999999999988888854 9999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 809 r~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
++.+-.+++.+|++++||||+|||||.+.+.+-+.+.++++.|.|||+++|+.. .+-++||++++|.+ |+.+.+|+.
T Consensus 138 KIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v 214 (300)
T COG4152 138 KIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214 (300)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH
Confidence 999999999999999999999999999999999999999999999999999985 68999999999985 788888987
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=343.07 Aligned_cols=213 Identities=28% Similarity=0.416 Sum_probs=180.4
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCc
Confidence 57888887631 1458999999999999999999999999999999999876 357999999987542
Q ss_pred ---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCcCCHH
Q 000860 731 ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS--LRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 731 ---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~--~~~~~v~~~~~~~lSgG 805 (1250)
...++.++|++|++.+++.+||+||+.+...++ ..+.++..+.++++++.+++.+ ..++.+. .||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-----~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYPH-----ELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcChh-----hCCHH
Confidence 234567999999999999999999998875442 2234445567889999999985 5666554 49999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEe
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 884 (1250)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|.+ |++++.
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQV 217 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999764 899999999985 57788999999985 788888
Q ss_pred CCC
Q 000860 885 GKL 887 (1250)
Q Consensus 885 g~~ 887 (1250)
|+.
T Consensus 218 ~~~ 220 (242)
T cd03295 218 GTP 220 (242)
T ss_pred cCH
Confidence 875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=344.43 Aligned_cols=215 Identities=25% Similarity=0.350 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (250)
T PRK11264 3 AIEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITI 67 (250)
T ss_pred cEEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEc
Confidence 478999998773 2358999999999999999999999999999999999865 3579999999875
Q ss_pred Cc-----------ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000860 729 EQ-----------STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSP 797 (1250)
Q Consensus 729 ~~-----------~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~ 797 (1250)
.. ...++.++|++|++.+++.+||+||+.+...... ....++..++++++++.+|+.+..++.++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-- 143 (250)
T PRK11264 68 DTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYPR-- 143 (250)
T ss_pred cccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCChh--
Confidence 42 1245679999999999999999999987543111 12334455678899999999887777664
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeec
Q 000860 798 GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 798 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++
T Consensus 144 ---~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~ 219 (250)
T PRK11264 144 ---RLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ 219 (250)
T ss_pred ---hCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 49999999999999999999999999999999999999999999999877999999999975 57788999999985
Q ss_pred CcEEEEeCCC
Q 000860 878 GGRVIYGGKL 887 (1250)
Q Consensus 878 gg~~~~~g~~ 887 (1250)
|++++.|+.
T Consensus 220 -G~i~~~~~~ 228 (250)
T PRK11264 220 -GRIVEQGPA 228 (250)
T ss_pred -CEEEEeCCH
Confidence 788888875
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=348.47 Aligned_cols=202 Identities=24% Similarity=0.317 Sum_probs=173.9
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCcc---c----ccceEEEEcCCCCC
Q 000860 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQS---T----FARISGYVEQEDVH 746 (1250)
Q Consensus 674 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~---~----~~~~~~yv~q~~~~ 746 (1250)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.+
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 4578999999999999999999999999999999999876 3579999999875421 1 13579999999999
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEe
Q 000860 747 SPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMD 826 (1250)
Q Consensus 747 ~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lD 826 (1250)
++.+||+||+.+..... .....+..++++++++.++|.+..++.++. ||||||||++|||||+.+|++|+||
T Consensus 114 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 114 LPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDE-----LSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred CCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999998875432 123344556788999999999888887754 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 827 EPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 827 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
|||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |++++.|+.
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999998754 899999999975 57788999999985 788888875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=307.59 Aligned_cols=191 Identities=28% Similarity=0.412 Sum_probs=166.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc-ccceEEeeccccccCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
++||+||||||||||||+|+|+..|. +|+|++||.+..... ..|.++.++|++.+|..+||.+|+.+|..-
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P----- 98 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSP----- 98 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCc-----
Confidence 58999999999999999999999864 999999999986554 467899999999999999999999876421
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
.. .++..+ +++++.++..+||..+.+...+. |||||||||++||+
T Consensus 99 ~L-----kL~a~~-------------------------r~~v~~aa~~vGl~~~~~RLP~~-----LSGGqRQRvALARc 143 (231)
T COG3840 99 GL-----KLNAEQ-------------------------REKVEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARC 143 (231)
T ss_pred cc-----ccCHHH-------------------------HHHHHHHHHHhChhhHhhhCccc-----cCchHHHHHHHHHH
Confidence 10 011111 12478899999999998888776 99999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|+++-+||+||||+|+|||.-+.++...+.+++.+.+.|+++++|| .+++.+.+|+++++++|+|.++|+.++..
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~-~~Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHH-PEDAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCC-HHHHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 9999999999999999999999999999999999889999998666 57889999999999999999999998864
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=351.38 Aligned_cols=218 Identities=26% Similarity=0.375 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+... ...+++|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 589999999885311 012469999999999999999999999999999999999876 3589999999775
Q ss_pred Cc-------------------ccccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc
Q 000860 729 EQ-------------------STFARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD 787 (1250)
Q Consensus 729 ~~-------------------~~~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~ 787 (1250)
.. ..+++.+|||+|++ .+++ .||+||+.|+.... ..+.++..++++++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 23467899999996 3554 59999998875321 234555567788999999996
Q ss_pred -ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHH
Q 000860 788 -SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIF 866 (1250)
Q Consensus 788 -~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 866 (1250)
+..++.+. .||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.
T Consensus 167 ~~~~~~~~~-----~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERSPF-----GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 55665553 59999999999999999999999999999999999999999999998777999999999975 467
Q ss_pred HhhcceeeeecCcEEEEeCCC
Q 000860 867 EAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 867 ~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
..+|++++|.+ |+++..|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999985 799999886
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=350.46 Aligned_cols=219 Identities=26% Similarity=0.352 Sum_probs=182.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++... .....+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~ 71 (305)
T PRK13651 2 QIKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDE 71 (305)
T ss_pred EEEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceec
Confidence 378999999885311 0123589999999999999999999999999999999998763 479999988653
Q ss_pred C---------------------------cccccceEEEEcCCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 000860 729 E---------------------------QSTFARISGYVEQED-VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEV 780 (1250)
Q Consensus 729 ~---------------------------~~~~~~~~~yv~q~~-~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~ 780 (1250)
. ....++.+|||+|++ ..+...||+|++.|..... ..+.++..++++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~ 148 (305)
T PRK13651 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKY 148 (305)
T ss_pred ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHH
Confidence 1 123466799999985 3344579999999875432 34556667789999
Q ss_pred HHHcCCc-ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEec
Q 000860 781 MSLVELD-SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 859 (1250)
Q Consensus 781 l~~l~l~-~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H 859 (1250)
++.+||. +..++.+. .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|
T Consensus 149 l~~~gL~~~~~~~~~~-----~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtH 223 (305)
T PRK13651 149 IELVGLDESYLQRSPF-----ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223 (305)
T ss_pred HHHcCCChhhhhCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEee
Confidence 9999996 66777665 49999999999999999999999999999999999999999999999877999999999
Q ss_pred CCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 860 QPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 860 ~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
++. ++.+.+|++++|++ |++++.|++
T Consensus 224 d~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 224 DLD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred CHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 974 57789999999985 789999886
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=346.61 Aligned_cols=215 Identities=27% Similarity=0.348 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYKD------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeCC------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4789999988741 2358999999999999999999999999999999999876 3589999999876
Q ss_pred Cc---ccccceEEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQ---STFARISGYVEQEDV-HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
.. ...++.+||++|++. .++..||.||+.|..... ..+.++.+++++++++.++|.+..++.+. .|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPY-----HLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChh-----hCCH
Confidence 43 234567999999963 445689999998864321 23444556678999999999888888775 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEe
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 884 (1250)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+.+.+|++++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999975 46688999999985 788888
Q ss_pred CCC
Q 000860 885 GKL 887 (1250)
Q Consensus 885 g~~ 887 (1250)
|+.
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 885
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=349.75 Aligned_cols=218 Identities=24% Similarity=0.327 Sum_probs=181.7
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.|+... ...+++|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECc
Confidence 78999999885311 012469999999999999999999999999999999999876 35799999998763
Q ss_pred c-------ccccceEEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000860 730 Q-------STFARISGYVEQEDV-HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHALVGSPGSF 800 (1250)
Q Consensus 730 ~-------~~~~~~~~yv~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~~ 800 (1250)
. ..+++.+|||+|++. .+...||+||+.|..... ..+.++.+++++++++.++|. +..++.+.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~----- 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPF----- 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcc-----
Confidence 1 234567999999862 233579999999875432 234555567789999999996 56676664
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ ++.+.+|++++|.+ |
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-G 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 49999999999999999999999999999999999999999999999764 899999999985 57788999999985 8
Q ss_pred EEEEeCCC
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 99999875
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=339.07 Aligned_cols=211 Identities=30% Similarity=0.445 Sum_probs=176.7
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcC
Confidence 35788887663 2358999999999999999999999999999999999876 35799999998754
Q ss_pred cc---c-ccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcCCH
Q 000860 730 QS---T-FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLV-ELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 730 ~~---~-~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~v~~~~~~~lSg 804 (1250)
.. . .++.++|++|++.+++.+|++||+.+...... ..+.+++++++++.+ ++.+..++.+. .|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~ 135 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLAG-----TLSG 135 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCchh-----hCCH
Confidence 31 1 24569999999999999999999988754321 123345567788887 57766666664 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEe
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 884 (1250)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++...+|++++|.+ |+++..
T Consensus 136 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 213 (222)
T cd03224 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLE 213 (222)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEe
Confidence 9999999999999999999999999999999999999999999777899999999975 57788999999985 788888
Q ss_pred CCC
Q 000860 885 GKL 887 (1250)
Q Consensus 885 g~~ 887 (1250)
|+.
T Consensus 214 ~~~ 216 (222)
T cd03224 214 GTA 216 (222)
T ss_pred CCH
Confidence 874
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=335.28 Aligned_cols=209 Identities=31% Similarity=0.481 Sum_probs=176.9
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++ ++++|+|+|+++++| +++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccc
Confidence 36788888763 235899999999999 999999999999999999999866 35899999998754
Q ss_pred c--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 730 Q--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 730 ~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
. ..+++.++|++|++.+++.+||+||+.+....+ ..+.++.++.++++++.+++.+..++.++ .||||||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 136 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIG-----SLSGGMR 136 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchh-----hCCHHHH
Confidence 3 234567999999999999999999998865543 12333445678899999999887777765 4999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999876 599999999985 46678999999986 6777654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=345.02 Aligned_cols=217 Identities=24% Similarity=0.306 Sum_probs=179.1
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.+.. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~------------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYPN------------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecCC------------CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 578888877631 2458999999999999999999999999999999999876 35899999998754
Q ss_pred c------ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000860 730 Q------STFARISGYVEQEDVHSPQVTIEESLWFSANLRL-----PKEISKDQRHEFVEEVMSLVELDSLRHALVGSPG 798 (1250)
Q Consensus 730 ~------~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~-----~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~ 798 (1250)
. ..+++.++|++|++.+++.+||+||+.+...... ......++.+++++++++.+++.+..+..+.
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 144 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD--- 144 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc---
Confidence 2 1245679999999999999999999976421100 0011123345678899999999887777664
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeec
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++
T Consensus 145 --~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 145 --QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred --cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 49999999999999999999999999999999999999999999998654 899999999985 46788999999985
Q ss_pred CcEEEEeCCC
Q 000860 878 GGRVIYGGKL 887 (1250)
Q Consensus 878 gg~~~~~g~~ 887 (1250)
|++++.|+.
T Consensus 222 -G~i~~~~~~ 230 (243)
T TIGR02315 222 -GEIVFDGAP 230 (243)
T ss_pred -CEEEecCCH
Confidence 788888875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=339.33 Aligned_cols=195 Identities=30% Similarity=0.441 Sum_probs=167.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHccCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~ 77 (1250)
+++|+||||||||||||+|+|.++|. +|+|.++|+++.+. +..+.++||||.....+.+||+|-+.+|..-+.
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~- 105 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHL- 105 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccc-
Confidence 58999999999999999999999865 99999999998643 567899999999888889999999988743210
Q ss_pred CcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHH
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA 157 (1250)
.... .. ..+.++.++++|+.+|+.+.++..+.+ |||||||||.||
T Consensus 106 --~~~~---~~-------------------------~~~D~~~v~~aL~~~~~~~la~r~~~~-----LSGGerQrv~iA 150 (258)
T COG1120 106 --GLFG---RP-------------------------SKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIA 150 (258)
T ss_pred --cccc---CC-------------------------CHhHHHHHHHHHHHhCcHHHhcCcccc-----cChhHHHHHHHH
Confidence 0000 00 001112478899999999999988866 999999999999
Q ss_pred HHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 158 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|||+++|+||+||||||+||...+.++++.+++++++.|.|+|+++ |+.+.+.++||++++|++|+++.+|+++++.
T Consensus 151 rALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vl-HDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 151 RALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVL-HDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 9999999999999999999999999999999999988899999875 5678999999999999999999999998875
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=344.86 Aligned_cols=215 Identities=20% Similarity=0.308 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 589999998773 2458999999999999999999999999999999999876 3589999999875
Q ss_pred Ccc------cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000860 729 EQS------TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGL 802 (1250)
Q Consensus 729 ~~~------~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~l 802 (1250)
... ..++.++|++|++.+++.+||.||+.+...... ..+.++.++++.++++.+++.+..++.++. |
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPSE-----L 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChhh-----C
Confidence 421 235679999999989999999999987643211 123344456788899999999888877754 9
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEE
Q 000860 803 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRV 881 (1250)
Q Consensus 803 SgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 881 (1250)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999974 57788999999985 789
Q ss_pred EEeCCC
Q 000860 882 IYGGKL 887 (1250)
Q Consensus 882 ~~~g~~ 887 (1250)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 888875
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=335.80 Aligned_cols=209 Identities=24% Similarity=0.293 Sum_probs=177.0
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYLG------------GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEecC------------CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 578899987731 2368999999999999999999999999999999999876 35899999998754
Q ss_pred c---c---cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000860 730 Q---S---TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 730 ~---~---~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lS 803 (1250)
. . .+++.++|++|++.+++.+|++||+.+....+ ..+.++..+.++++++.+++.+..++.++ .||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPI-----QLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCch-----hCC
Confidence 2 1 24567999999998888999999998865432 23344455678889999999887777664 499
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 882 (1250)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|+++ ++...+|++++|++ |+++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 99999999999999999999999999999999999999999999777899999999985 56678999999986 6653
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=351.22 Aligned_cols=229 Identities=22% Similarity=0.264 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++||++.++............+..++|+|||++|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 589999999885321100000011235699999999999999999999999999999999998763 579999999886
Q ss_pred Ccc------cccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000860 729 EQS------TFARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHALVGSPGS 799 (1250)
Q Consensus 729 ~~~------~~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~ 799 (1250)
... .+++.++||+|++ .++|.+||.|++.+......+ ..++++.+++++++++.++|. +..++.+.
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~---- 160 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRYPH---- 160 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCCcc----
Confidence 431 2456799999997 588899999999886543211 245566677889999999994 45566554
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
.||||||||++|||||+.+|++|++||||+|||..++..+++.|+++.++ |.|+|++||++. .+...+|++++|.+
T Consensus 161 -~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 161 -EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 59999999999999999999999999999999999999999999999764 899999999975 46678999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 238 G~ive~g~~ 246 (331)
T PRK15079 238 GHAVELGTY 246 (331)
T ss_pred CEEEEEcCH
Confidence 799998885
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=322.76 Aligned_cols=218 Identities=25% Similarity=0.364 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++.+++++++. ..++++|||+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++
T Consensus 4 lL~v~~l~k~FG-------------Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~i 68 (250)
T COG0411 4 LLEVRGLSKRFG-------------GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDI 68 (250)
T ss_pred eeeeccceeecC-------------CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCccc
Confidence 467788887663 4578999999999999999999999999999999999877 4589999999987
Q ss_pred Ccc----cccceEEEEcCCCCCCCCCCHHHHHHHHHhcC--------CCCC-CCHHHHHHHHHHHHHHcCCccccccccc
Q 000860 729 EQS----TFARISGYVEQEDVHSPQVTIEESLWFSANLR--------LPKE-ISKDQRHEFVEEVMSLVELDSLRHALVG 795 (1250)
Q Consensus 729 ~~~----~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~--------~~~~-~~~~~~~~~v~~~l~~l~l~~~~~~~v~ 795 (1250)
... ..+.-++--+|...+|+++||.||+..++..+ .+.. ...++..+++.++++.+||.+.+|...|
T Consensus 69 t~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~ 148 (250)
T COG0411 69 TGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG 148 (250)
T ss_pred CCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh
Confidence 642 23445788899999999999999999886533 1111 1345667888999999999999999998
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceee
Q 000860 796 SPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLL 874 (1250)
Q Consensus 796 ~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~ 874 (1250)
+ ||+||+||+.|||||+++|++|+||||.+||.+....++.+.|+++.++ |.||+++-|+.+ -++.+||||+|
T Consensus 149 ~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~V 222 (250)
T COG0411 149 N-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVV 222 (250)
T ss_pred c-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEe
Confidence 6 9999999999999999999999999999999999999999999999874 699999999986 48999999999
Q ss_pred eecCcEEEEeCCCC
Q 000860 875 MKRGGRVIYGGKLG 888 (1250)
Q Consensus 875 l~~gg~~~~~g~~~ 888 (1250)
|+. |+++..|+++
T Consensus 223 l~~-G~~IAeG~P~ 235 (250)
T COG0411 223 LNY-GEVIAEGTPE 235 (250)
T ss_pred ccC-CcCcccCCHH
Confidence 985 7999999874
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=350.09 Aligned_cols=191 Identities=27% Similarity=0.420 Sum_probs=169.9
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccc-cceEEeeccccccCCCCCHHHHHHHHHHccCCCcc
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV-QRASAYIGQTDNHIAELTVRETLDFAARCQGANDS 80 (1250)
Q Consensus 2 ~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~~ 80 (1250)
++|+|||||||||||++|+|+.+|+ +|+|.++|.++++..+ +|.+|+|+|+..++|++||+|||.|+++.++....
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ 108 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKA 108 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchH
Confidence 6899999999999999999999865 9999999999987654 67899999999999999999999999887654221
Q ss_pred hhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHHH
Q 000860 81 FAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI 160 (1250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~al 160 (1250)
+ .+.+++++.+.|+|++..|.+.. +|||||||||+|||||
T Consensus 109 ---------------------e--------------i~~rV~eva~~L~l~~lL~r~P~-----~LSGGQrQRVAlaRAl 148 (338)
T COG3839 109 ---------------------E--------------IDKRVKEVAKLLGLEHLLNRKPL-----QLSGGQRQRVALARAL 148 (338)
T ss_pred ---------------------H--------------HHHHHHHHHHHcCChhHHhcCcc-----cCChhhHHHHHHHHHH
Confidence 1 12358889999999999998765 4999999999999999
Q ss_pred hcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 161 VGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 161 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
+++|+++|||||+|+||+..+.++...|+++.++.+.|+|.+ +|+..|+..++|||++|++|++...|++.++.+
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYV-THDq~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYV-THDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEE-cCCHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 999999999999999999999999999999888778787776 567889999999999999999999999999843
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=310.41 Aligned_cols=215 Identities=26% Similarity=0.413 Sum_probs=182.7
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++.+|++|+.. .+.+|++||++++|||++||+||||||||||||+|+|...+ .+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChh
Confidence 57789998764 45799999999999999999999999999999999998763 4799999999865
Q ss_pred c---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCC--CHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 730 Q---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEI--SKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 730 ~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~--~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
. ....+..+..||+..+-...||+|-+.++.. |... ...+..+.++++++..++.+.+.+..- .|||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~-----~LSG 138 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGRDYR-----TLSG 138 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhccchh-----hcCc
Confidence 4 3445667889999888667899999998753 3322 223455668899999999998877664 4999
Q ss_pred HHHHHHHHHHHHhh------CCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 805 EQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 805 Gerqr~~ia~~l~~------~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
||||||.+||.|+. ++++||||||||+||...+..++++.|+++++|..|+++.||.+. ....+|+|++|.+
T Consensus 139 GEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~- 216 (259)
T COG4559 139 GEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ- 216 (259)
T ss_pred hHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-
Confidence 99999999999986 356999999999999999999999999999999999999999974 6788999999985
Q ss_pred cEEEEeCCCCc
Q 000860 879 GRVIYGGKLGV 889 (1250)
Q Consensus 879 g~~~~~g~~~~ 889 (1250)
|+++..|++..
T Consensus 217 Grv~a~g~p~~ 227 (259)
T COG4559 217 GRVIASGSPQD 227 (259)
T ss_pred CeEeecCCHHH
Confidence 89999998753
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=376.71 Aligned_cols=220 Identities=29% Similarity=0.435 Sum_probs=183.1
Q ss_pred CCeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECC
Q 000860 646 HPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG 725 (1250)
Q Consensus 646 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 725 (1250)
....++|+|+.|+|+.+ ++.+||+|+|+.|++||.+||+|||||||||++++|.+... |.+|+|.+||
T Consensus 347 ~~g~ief~nV~FsYPsR----------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~idG 414 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSR----------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLIDG 414 (1228)
T ss_pred cccceEEEEEEecCCCC----------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEcC
Confidence 34579999999999764 35679999999999999999999999999999999999776 5689999999
Q ss_pred ccCCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHH---HHHcCCcccccccccCCCC
Q 000860 726 YPKEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEV---MSLVELDSLRHALVGSPGS 799 (1250)
Q Consensus 726 ~~~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~---l~~l~l~~~~~~~v~~~~~ 799 (1250)
.++.. +.+|.++|.|.|+|++| ..||+||+.|+. .+.+.++..+..+.+ --...|.+-.||.+|+.+.
T Consensus 415 ~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~-----~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~ 488 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGK-----PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV 488 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCC-----CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC
Confidence 98754 56788999999999887 579999998862 133444333322211 1123466677899998665
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
.||||||||++|||||++||+||+||||||+||+++++.+++.|++.. .|+|.|+++|+.+ ..+.+|+|++|++ |
T Consensus 489 -qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS--tIrnaD~I~v~~~-G 563 (1228)
T KOG0055|consen 489 -QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS--TIRNADKIAVMEE-G 563 (1228)
T ss_pred -CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh--hhhccCEEEEEEC-C
Confidence 499999999999999999999999999999999999999999998764 6999999999975 4567999999986 8
Q ss_pred EEEEeCCCC
Q 000860 880 RVIYGGKLG 888 (1250)
Q Consensus 880 ~~~~~g~~~ 888 (1250)
++++.|+.+
T Consensus 564 ~IvE~G~h~ 572 (1228)
T KOG0055|consen 564 KIVEQGTHD 572 (1228)
T ss_pred EEEEecCHH
Confidence 999999874
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=335.73 Aligned_cols=211 Identities=25% Similarity=0.357 Sum_probs=174.6
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++.. .+.+++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 5788998877421 012469999999999999999999999999999999999876 35899999998754
Q ss_pred cc---c---cc-ceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000860 730 QS---T---FA-RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGL 802 (1250)
Q Consensus 730 ~~---~---~~-~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~l 802 (1250)
.. . ++ +.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+|+.+..++.++ .|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPS-----EL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hC
Confidence 31 1 22 56999999998888999999998865432 12233445668899999999887777665 49
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEE
Q 000860 803 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRV 881 (1250)
Q Consensus 803 SgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 881 (1250)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+ ..+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999998764 899999999985 34 56899999986 665
Q ss_pred E
Q 000860 882 I 882 (1250)
Q Consensus 882 ~ 882 (1250)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 3
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=347.78 Aligned_cols=218 Identities=23% Similarity=0.358 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+... ...+++|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 478999999885211 012469999999999999999999999999999999999876 3579999999876
Q ss_pred Cc-------ccccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000860 729 EQ-------STFARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHALVGSPG 798 (1250)
Q Consensus 729 ~~-------~~~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~ 798 (1250)
.. ..+++.+|||+|++ .+++ .||.||+.|..... ..+.++..++++++++.+||. +..++.+.
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~--- 144 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPF--- 144 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcc---
Confidence 32 23567899999986 3454 59999999875332 234556667789999999996 56666654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeec
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|++. ++.+.+|++++|++
T Consensus 145 --~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~ 221 (286)
T PRK13646 145 --QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE 221 (286)
T ss_pred --cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 4999999999999999999999999999999999999999999999875 4899999999975 57788999999985
Q ss_pred CcEEEEeCCC
Q 000860 878 GGRVIYGGKL 887 (1250)
Q Consensus 878 gg~~~~~g~~ 887 (1250)
|++++.|+.
T Consensus 222 -G~i~~~g~~ 230 (286)
T PRK13646 222 -GSIVSQTSP 230 (286)
T ss_pred -CEEEEECCH
Confidence 788888875
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=356.73 Aligned_cols=213 Identities=28% Similarity=0.476 Sum_probs=179.4
Q ss_pred CeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCc
Q 000860 647 PLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 726 (1250)
Q Consensus 647 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~ 726 (1250)
++.++.+|+++.|+. ++++++|+|+++++|+.+||+|+||||||||+++|+|..++ .+|+|.+||.
T Consensus 318 ~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng~ 383 (559)
T COG4988 318 PIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGI 383 (559)
T ss_pred CceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCc
Confidence 456777899998853 23789999999999999999999999999999999998873 5899999998
Q ss_pred cCC---cccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc------ccccccCC
Q 000860 727 PKE---QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL------RHALVGSP 797 (1250)
Q Consensus 727 ~~~---~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~------~~~~v~~~ 797 (1250)
+.. ...++++++||+|++.+++ -|++||+.++.. +.++++ +.++++..+|.+. .|+.+|+
T Consensus 384 ~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~-----~~s~e~----i~~al~~a~l~~~v~~p~GLdt~ige- 452 (559)
T COG4988 384 DLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARP-----DASDEE----IIAALDQAGLLEFVPKPDGLDTVIGE- 452 (559)
T ss_pred cccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCC-----cCCHHH----HHHHHHHhcHHHhhcCCCcccchhcc-
Confidence 754 4578999999999999886 499999987631 234443 5566666666544 4566765
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeec
Q 000860 798 GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 798 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
++++|||||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++|||++||++ +....+|+|++|++
T Consensus 453 ~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl--~~~~~~D~I~vld~ 529 (559)
T COG4988 453 GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRL--EDAADADRIVVLDN 529 (559)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcCh--HHHhcCCEEEEecC
Confidence 4468999999999999999999999999999999999999999999999976 59999999997 45678999999985
Q ss_pred CcEEEEeCCCC
Q 000860 878 GGRVIYGGKLG 888 (1250)
Q Consensus 878 gg~~~~~g~~~ 888 (1250)
|+++..|..+
T Consensus 530 -G~l~~~g~~~ 539 (559)
T COG4988 530 -GRLVEQGTHE 539 (559)
T ss_pred -CceeccCCHH
Confidence 8999998863
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-38 Score=353.14 Aligned_cols=210 Identities=26% Similarity=0.411 Sum_probs=177.1
Q ss_pred eeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCcc
Q 000860 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 727 (1250)
Q Consensus 648 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 727 (1250)
..++|+|++++|.. +++||+++||+|++||.+||+|+|||||||++|+|.+... .+|+|.+||++
T Consensus 350 ~~I~F~dV~f~y~~------------k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~d 414 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGP------------KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQD 414 (591)
T ss_pred CcEEEEeeEEEeCC------------CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCee
Confidence 35999999999852 4569999999999999999999999999999999998664 47999999998
Q ss_pred CCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------cccccccccCC
Q 000860 728 KEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL-------DSLRHALVGSP 797 (1250)
Q Consensus 728 ~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l-------~~~~~~~v~~~ 797 (1250)
+++ +.+|+.|||||||..+| +.||.+|+.|+.. ..+.++ |-++.+..++ .+-.+|.+|+.
T Consensus 415 ik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn~-----sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VGer 484 (591)
T KOG0057|consen 415 IKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGNP-----SASDEE----VVEACKRAGLHDVISRLPDGYQTLVGER 484 (591)
T ss_pred HhhhChHHhhhheeEeCCccccc-chhHHHHhhcCCC-----CcCHHH----HHHHHHHcCcHHHHHhccccchhhHhhc
Confidence 654 56889999999998887 5699999998731 234433 3444445444 44556778875
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeec
Q 000860 798 GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 798 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
+. -|||||||||+||||++.||+|+++|||||.||++++.++++.+++. ..|+|+|++.|+. ++...||+|++|++
T Consensus 485 G~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~n 560 (591)
T KOG0057|consen 485 GL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLDN 560 (591)
T ss_pred cc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEEC
Confidence 54 49999999999999999999999999999999999999999999984 4699999999996 57899999999986
Q ss_pred CcEEEEeCCC
Q 000860 878 GGRVIYGGKL 887 (1250)
Q Consensus 878 gg~~~~~g~~ 887 (1250)
|++...|+.
T Consensus 561 -G~v~e~gth 569 (591)
T KOG0057|consen 561 -GTVKEYGTH 569 (591)
T ss_pred -CeeEEeccH
Confidence 788888886
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=346.86 Aligned_cols=216 Identities=25% Similarity=0.347 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++.. ..+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 47899999987421 12358999999999999999999999999999999999876 3589999999886
Q ss_pred Cc---ccccceEEEEcCCC-CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQ---STFARISGYVEQED-VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~-~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
.. ...++.+||++|++ ..++..||+||+.|..... +.+.++..++++++++.+||.+..+..++ .|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPA-----RLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCH
Confidence 43 23456799999997 3677889999998875432 34455566778999999999988887775 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++ ..+|++++|.+ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999975 34 67999999985 79988
Q ss_pred eCCC
Q 000860 884 GGKL 887 (1250)
Q Consensus 884 ~g~~ 887 (1250)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 8885
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=299.77 Aligned_cols=213 Identities=27% Similarity=0.400 Sum_probs=180.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++.+++++.+... ..+..||++|++.|++||.+||+|||||||||||-+|+|... +.+|+|.+.|++.
T Consensus 6 ii~~~~l~ktvg~~---------~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L 74 (228)
T COG4181 6 IIEVHHLSKTVGQG---------EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPL 74 (228)
T ss_pred eeehhhhhhhhcCC---------CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcch
Confidence 36777777665432 246789999999999999999999999999999999999876 4589999999986
Q ss_pred Cc------cc-ccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000860 729 EQ------ST-FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFG 801 (1250)
Q Consensus 729 ~~------~~-~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~ 801 (1250)
.. .. ..+.+|+|+|...+.|++|..||+.....++-. +..+..+...+.++.+||.+..+..++ +
T Consensus 75 ~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP~-----q 146 (228)
T COG4181 75 HKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYPA-----Q 146 (228)
T ss_pred hhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCcc-----c
Confidence 43 12 346799999999999999999999988877642 233445567889999999988877765 4
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 802 lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
|||||+|||+||||++..|+|||.||||-+||..+...|.+.|-.+.+ .|.|.|++||||. +...|||.+-|.+ |+
T Consensus 147 LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~ 223 (228)
T COG4181 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GR 223 (228)
T ss_pred cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ce
Confidence 999999999999999999999999999999999999999999988754 5999999999984 6789999999986 67
Q ss_pred EEE
Q 000860 881 VIY 883 (1250)
Q Consensus 881 ~~~ 883 (1250)
++.
T Consensus 224 l~~ 226 (228)
T COG4181 224 LVE 226 (228)
T ss_pred ecc
Confidence 653
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=335.71 Aligned_cols=206 Identities=26% Similarity=0.371 Sum_probs=175.1
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++ ++.+|+++|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 5788888763 2358999999999999999999999999999999999875 358999999987632
Q ss_pred -----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000860 731 -----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 731 -----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgG 805 (1250)
..+++.++|++|++.+++.+|++||+.+..... .....++.+++++++++.+|+.+..++.+. .||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADAYPA-----QLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhhCcc-----ccCHH
Confidence 234678999999999999999999998864311 122344455678899999999887777765 49999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|++. ++.+.+|++++|++ |+
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 999999999999999999999999999999999999999999877899999999985 57788999999986 44
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=337.37 Aligned_cols=212 Identities=29% Similarity=0.449 Sum_probs=179.1
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcc
Confidence 57888888763 2358999999999999999999999999999999999875 35899999998754
Q ss_pred c--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 730 Q--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 730 ~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
. ...++.++|++|++.+++.+|++||+.+....+ ..+.++..+.++++++.+||.+..++.++ .||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR-----ELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHH
Confidence 2 122357999999998888999999998765432 22344455678899999999887777765 4999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++ ..+|++++|.+ |+++..|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999875 5899999999985 34 45999999985 78888877
Q ss_pred C
Q 000860 887 L 887 (1250)
Q Consensus 887 ~ 887 (1250)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 4
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=330.24 Aligned_cols=194 Identities=26% Similarity=0.425 Sum_probs=166.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCe---ecCcc-cccceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGW---ELDEF-QVQRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~---~~~~~-~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
++|++|||||||||||++|+|+..|+ +|+|.+||. |.+.. .-.|.||||.|+..+|+++||.|||.||.+++.
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~ 106 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK 106 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccc
Confidence 48999999999999999999999875 999999999 55543 235789999999999999999999999987652
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
...+. ...+.+++++|+.+.|++..+. +..+|||||||||++
T Consensus 107 ~~p~~---------------------------------~~~r~rv~elL~lvqL~~la~r-----yP~QLSGGQrQRVAL 148 (345)
T COG1118 107 ERPSE---------------------------------AEIRARVEELLRLVQLEGLADR-----YPAQLSGGQRQRVAL 148 (345)
T ss_pred cCCCh---------------------------------hhHHHHHHHHHHHhcccchhhc-----CchhcChHHHHHHHH
Confidence 11110 0112347888999999887664 456799999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||||+..|++||||||+++||++.+.++.++|+++.++.|.|++++ +|+.+++.+++|||++|++|+|...|+++|+.+
T Consensus 149 ARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfV-THD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 149 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFV-THDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEE-eCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 9999999999999999999999999999999999988778888876 577899999999999999999999999999843
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=339.89 Aligned_cols=206 Identities=22% Similarity=0.318 Sum_probs=177.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEH
Confidence 589999998873 2458999999999999999999999999999999999876 3579999999765
Q ss_pred CcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000860 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerq 808 (1250)
. .+++.++|++|++.+++.+||+||+.+... . ..+++++++++.++|.+..+..++ .|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWPA-----ALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHH
Confidence 3 345679999999998988999999987421 0 123567889999999887777664 49999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 809 r~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
|++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||+++|++. ++...+|++++|.+ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999985 56788999999985 788887764
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=334.87 Aligned_cols=193 Identities=27% Similarity=0.424 Sum_probs=164.6
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCC-CCCCC
Q 000860 675 LQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFARISGYVEQEDV-HSPQV 750 (1250)
Q Consensus 675 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~q~~~-~~~~l 750 (1250)
+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 469999999999999999999999999999999999865 357999999987542 234567999999974 36678
Q ss_pred CHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000860 751 TIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTS 830 (1250)
Q Consensus 751 tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTs 830 (1250)
||+||+.+..... .....+.++.++++++.++|.+..++.++ .||||||||++|||||+.+|++++|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPF-----TLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998865432 12334445678899999999877777765 499999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 831 GLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 831 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
|||+.++..+.+.|++++++|+|||+++|++. ++...+|++++|.+|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999975 566779999999863
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=338.96 Aligned_cols=214 Identities=25% Similarity=0.368 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 66 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEec
Confidence 478899998873 2358999999999999999999999999999999999876 3579999999875
Q ss_pred C---------cccccceEEEEcCCCCCCCCCCHHHHHHHH-HhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000860 729 E---------QSTFARISGYVEQEDVHSPQVTIEESLWFS-ANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPG 798 (1250)
Q Consensus 729 ~---------~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~-~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~ 798 (1250)
. ....++.++|++|++.+++.+||.||+.+. .... +....+..+++.++++.+|+.+..++.++
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--- 140 (242)
T PRK11124 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFPL--- 140 (242)
T ss_pred ccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh---
Confidence 2 013456799999999999999999999753 2221 12334445678899999999887777765
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|.+
T Consensus 141 --~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~- 216 (242)
T PRK11124 141 --HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN- 216 (242)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 49999999999999999999999999999999999999999999999777999999999985 56678999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|++++.|+.
T Consensus 217 g~i~~~~~~ 225 (242)
T PRK11124 217 GHIVEQGDA 225 (242)
T ss_pred CEEEEeCCH
Confidence 788888875
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=339.69 Aligned_cols=215 Identities=27% Similarity=0.391 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (241)
T PRK10895 3 TLTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDI 67 (241)
T ss_pred eEEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 478899998763 2358999999999999999999999999999999999875 3579999999876
Q ss_pred Ccc----cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQS----TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~~----~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
... ..++.++|++|++.+++.+||.||+.+...+.. ..+.++.+++++++++.+++.+..+..++ .|||
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 140 (241)
T PRK10895 68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMGQ-----SLSG 140 (241)
T ss_pred CCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcchh-----hCCH
Confidence 431 235679999999998989999999987643321 12334455678899999999877766664 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEe
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 884 (1250)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.+++++++|+|||+++|++. ++...+|++++|++ |++++.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~ 218 (241)
T PRK10895 141 GERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAH 218 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEee
Confidence 9999999999999999999999999999999999999999998777999999999974 57889999999985 788888
Q ss_pred CCC
Q 000860 885 GKL 887 (1250)
Q Consensus 885 g~~ 887 (1250)
|+.
T Consensus 219 ~~~ 221 (241)
T PRK10895 219 GTP 221 (241)
T ss_pred CCH
Confidence 875
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=345.35 Aligned_cols=216 Identities=25% Similarity=0.381 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYSD------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 5899999998741 2458999999999999999999999999999999999876 4589999999876
Q ss_pred Cc-----ccccceEEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcC
Q 000860 729 EQ-----STFARISGYVEQEDV-HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGL 802 (1250)
Q Consensus 729 ~~-----~~~~~~~~yv~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~l 802 (1250)
.. ..+++.+||++|++. .+...||+||+.+..... +.+.++.+++++++++.+||.+..++.++ .|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTH-----CL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcc-----cC
Confidence 31 235678999999973 334679999998864322 23445556778999999999988887765 49
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEE
Q 000860 803 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRV 881 (1250)
Q Consensus 803 SgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 881 (1250)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999765 899999999975 46678999999986 789
Q ss_pred EEeCCCC
Q 000860 882 IYGGKLG 888 (1250)
Q Consensus 882 ~~~g~~~ 888 (1250)
++.|+.+
T Consensus 221 ~~~g~~~ 227 (283)
T PRK13636 221 ILQGNPK 227 (283)
T ss_pred EEeCCHH
Confidence 9999863
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=345.67 Aligned_cols=219 Identities=26% Similarity=0.348 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 478899998874210 012469999999999999999999999999999999999876 3589999999875
Q ss_pred Cc-------ccccceEEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000860 729 EQ-------STFARISGYVEQEDV-HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHALVGSPGS 799 (1250)
Q Consensus 729 ~~-------~~~~~~~~yv~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~ 799 (1250)
.. ...++.++|++|++. .+..+||.||+.+..... ....++..++++++++.+||. +..++.++.
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~--- 145 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPFE--- 145 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCccc---
Confidence 32 234567999999963 233589999998865432 234455667789999999997 567777654
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. ++.+.+|++++|++ |
T Consensus 146 --LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G 221 (287)
T PRK13641 146 --LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-G 221 (287)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 9999999999999999999999999999999999999999999999777999999999975 57789999999985 7
Q ss_pred EEEEeCCC
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
+++..|+.
T Consensus 222 ~i~~~g~~ 229 (287)
T PRK13641 222 KLIKHASP 229 (287)
T ss_pred EEEEeCCH
Confidence 89888875
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=336.52 Aligned_cols=217 Identities=26% Similarity=0.322 Sum_probs=174.0
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.+... .+..++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 5788999877421 011368999999999999999999999999999999999865 35799999998764
Q ss_pred c------ccccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000860 730 Q------STFARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHALVGSPGSF 800 (1250)
Q Consensus 730 ~------~~~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~~ 800 (1250)
. ..+++.++|++|++ .+++.+||+||+.+......+ ....+..+..++++++.+++. +..+..++
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRYPH----- 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCCch-----
Confidence 3 23456899999998 466789999999876543311 111111222235788999995 55666664
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 49999999999999999999999999999999999999999999999765 899999999985 56678999999985 7
Q ss_pred EEEEeC
Q 000860 880 RVIYGG 885 (1250)
Q Consensus 880 ~~~~~g 885 (1250)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 777654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=338.73 Aligned_cols=214 Identities=26% Similarity=0.336 Sum_probs=179.1
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEECCc
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISGY 726 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g~ 726 (1250)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 57899998773 235899999999999999999999999999999999986532 12799999998
Q ss_pred cCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 000860 727 PKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD----SLRHALVGSP 797 (1250)
Q Consensus 727 ~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~v~~~ 797 (1250)
++.. ...++.++|++|++.+++ +|++||+.+....+. ..+.++..+.++++++.+|+. +..++.++
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-- 143 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSAL-- 143 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcc--
Confidence 7642 234567999999998888 999999988754431 123345556788999999997 55555554
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeec
Q 000860 798 GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 798 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++...+|++++|++
T Consensus 144 ---~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 144 ---GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred ---cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 5999999999999999999999999999999999999999999999876 589999999985 57788999999986
Q ss_pred CcEEEEeCCC
Q 000860 878 GGRVIYGGKL 887 (1250)
Q Consensus 878 gg~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 788888875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=340.45 Aligned_cols=214 Identities=22% Similarity=0.293 Sum_probs=181.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++++|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEc
Confidence 478999998873 2458999999999999999999999999999999999876 3579999999865
Q ss_pred Cc----------------ccccceEEEEcCCCCCCCCCCHHHHHHHHHh-cCCCCCCCHHHHHHHHHHHHHHcCCcccc-
Q 000860 729 EQ----------------STFARISGYVEQEDVHSPQVTIEESLWFSAN-LRLPKEISKDQRHEFVEEVMSLVELDSLR- 790 (1250)
Q Consensus 729 ~~----------------~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~-l~~~~~~~~~~~~~~v~~~l~~l~l~~~~- 790 (1250)
.. ..+++.++|++|++.+++.+||+||+.+... .. .....+.++++.++++.+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 31 1345679999999999999999999987542 21 123445567788999999998753
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhc
Q 000860 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFD 870 (1250)
Q Consensus 791 ~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 870 (1250)
+..+. .||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|++++++|+|||+++|++. ++...+|
T Consensus 147 ~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d 220 (257)
T PRK10619 147 GKYPV-----HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSS 220 (257)
T ss_pred hCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 55443 59999999999999999999999999999999999999999999999877999999999985 5667899
Q ss_pred ceeeeecCcEEEEeCCC
Q 000860 871 ELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 871 ~v~~l~~gg~~~~~g~~ 887 (1250)
++++|++ |++++.|+.
T Consensus 221 ~i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 221 HVIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEEC-CEEEEeCCH
Confidence 9999986 788888875
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=334.78 Aligned_cols=199 Identities=28% Similarity=0.438 Sum_probs=164.8
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCC--CCCCH
Q 000860 675 LQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHS--PQVTI 752 (1250)
Q Consensus 675 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~--~~ltv 752 (1250)
+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++. ..++.++|++|++.+. +.+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 358999999999999999999999999999999999865 35799999998754 3456799999998763 34899
Q ss_pred HHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000860 753 EESLWFSANLRLP-KEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 831 (1250)
Q Consensus 753 ~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsg 831 (1250)
+||+.+....... .....++.+++++++++.+++.+..++.++ .||||||||++|||||+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG-----ELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 001123345678899999999887777765 4999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 832 LDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 832 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999998777899999999985 57788999999974 5 44443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=339.34 Aligned_cols=215 Identities=23% Similarity=0.286 Sum_probs=177.6
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 689999998873 235899999999999999999999999999999999976532 2479999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD----SLRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~v~~ 796 (1250)
.++.. ...++.++|++|++.+++ +||+||+.+...... .....+.+++++++++.+++. +..++.+
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 148 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA-- 148 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc--
Confidence 87532 234667999999988774 899999988754321 112334456788888988873 3345544
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ +++|||+++|+++ ++...+|++++|.
T Consensus 149 ---~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 149 ---LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 3599999999999999999999999999999999999999999999996 4799999999985 5678899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 5 788888875
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=355.06 Aligned_cols=227 Identities=22% Similarity=0.275 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeCCccc--c--cc-------cccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCee
Q 000860 649 TMTFHNISYYVDTPQAM--R--SK-------GIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYI 717 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~--~--~~-------~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~ 717 (1250)
.++++|+++.+...+.. + .. ....+...+|+|+||+|++||+++|+|||||||||||++|+|..+ +.
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~ 81 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PT 81 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CC
Confidence 47888888766543210 0 00 001123458999999999999999999999999999999999876 35
Q ss_pred EEEEEECCccCCcc---c----ccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccc
Q 000860 718 EGDIKISGYPKEQS---T----FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR 790 (1250)
Q Consensus 718 ~G~i~~~g~~~~~~---~----~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~ 790 (1250)
+|+|.++|.++... . .++.+|||+|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..
T Consensus 82 sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~ 158 (400)
T PRK10070 82 RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYA 158 (400)
T ss_pred CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhh
Confidence 79999999886431 1 2357999999999999999999999876543 233455567789999999999888
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhh
Q 000860 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAF 869 (1250)
Q Consensus 791 ~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~ 869 (1250)
++.+. .||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++...+
T Consensus 159 ~~~~~-----~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~ 232 (400)
T PRK10070 159 HSYPD-----ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIG 232 (400)
T ss_pred hcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhC
Confidence 87775 4999999999999999999999999999999999999999999999865 4899999999985 577899
Q ss_pred cceeeeecCcEEEEeCCC
Q 000860 870 DELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 870 d~v~~l~~gg~~~~~g~~ 887 (1250)
|++++|.+ |+++..|+.
T Consensus 233 Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 233 DRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred CEEEEEEC-CEEEecCCH
Confidence 99999985 788888875
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=314.75 Aligned_cols=206 Identities=24% Similarity=0.370 Sum_probs=162.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCeecCcc-----cccceEEeeccccccCCCCCHHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD--GNLNKSGSITYNGWELDEF-----QVQRASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~--~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~ 73 (1250)
+||++|||||||||||+++.++.+ |....+|+|.++|+++.+. .+|+.+|.|+|.+.-|| +|+.||+.|+.+
T Consensus 35 VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r 113 (253)
T COG1117 35 VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLR 113 (253)
T ss_pred eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHH
Confidence 589999999999999999999765 3446899999999998432 46899999999999999 899999999999
Q ss_pred ccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCcc-ccccccCCCccccCccccch
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDL-CSDTVVGSEMLRGVSGGQKK 152 (1250)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqkq 152 (1250)
+++.... ++ +++|+..|+.-+|.+ ..|.. .+ ...+|||||+|
T Consensus 114 ~~g~~~~------~l-----------------------------deiVe~sLk~AaLWdEVKDrL-~~-sa~~LSGGQQQ 156 (253)
T COG1117 114 LHGIKDK------EL-----------------------------DEIVESSLKKAALWDEVKDRL-HK-SALGLSGGQQQ 156 (253)
T ss_pred hhccchH------HH-----------------------------HHHHHHHHHHhHhHHHhHHHh-hC-CccCCChhHHH
Confidence 8765431 00 012334444444422 12221 11 12459999999
Q ss_pred hhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChh
Q 000860 153 RVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRA 232 (1250)
Q Consensus 153 Rv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~ 232 (1250)
|++|||||+.+|+|||||||||+|||.+..+|-+.+.++.+ .-|+|++ +|...++.+..|+..++..|++++.|+.+
T Consensus 157 RLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviV-THnmqQAaRvSD~taFf~~G~LvE~g~T~ 233 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIV-THNMQQAARVSDYTAFFYLGELVEFGPTD 233 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEE-eCCHHHHHHHhHhhhhhcccEEEEEcCHH
Confidence 99999999999999999999999999999999999999964 4577765 56789999999999999999999999999
Q ss_pred hHHHHHHhCCCCCCCCCCchhHH
Q 000860 233 EVLEFFESLGFRLPPRKGVADFL 255 (1250)
Q Consensus 233 ~~~~~f~~lG~~~~~~~~~~~~~ 255 (1250)
++. ..|.++...||+
T Consensus 234 ~iF--------~~P~~~~TedYi 248 (253)
T COG1117 234 KIF--------TNPKHKRTEDYI 248 (253)
T ss_pred hhh--------cCccHHHHHHHh
Confidence 873 345555555544
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=337.21 Aligned_cols=212 Identities=24% Similarity=0.358 Sum_probs=178.6
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 588999998763 2458999999999999999999999999999999999876 3579999999876
Q ss_pred Ccc----cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcCC
Q 000860 729 EQS----TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLV-ELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 729 ~~~----~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-~l~~~~~~~v~~~~~~~lS 803 (1250)
... ..++.++|++|++.+++.+||.||+.+..... ..++..+.++++++.+ ++.+..++.+. .||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~~-----~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRAG-----TMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCchh-----hCC
Confidence 431 23567999999999999999999998764221 1223344567777877 47666565554 499
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
||||||++|||+|+.+|+|++|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999998877999999999975 57889999999985 79999
Q ss_pred eCCC
Q 000860 884 GGKL 887 (1250)
Q Consensus 884 ~g~~ 887 (1250)
.|+.
T Consensus 218 ~~~~ 221 (237)
T PRK11614 218 EDTG 221 (237)
T ss_pred eCCH
Confidence 9886
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=343.10 Aligned_cols=213 Identities=24% Similarity=0.374 Sum_probs=181.1
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++. ++.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYPD------------GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcCC------------CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 678899987731 2358999999999999999999999999999999999876 35899999998764
Q ss_pred c----ccccceEEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 730 Q----STFARISGYVEQEDV-HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 730 ~----~~~~~~~~yv~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
. ...++.+||++|++. .++..||.||+.+..... ..+.++.+++++++++.+||.+..++.++ .|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPK-----TLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcc-----cCCH
Confidence 2 234567999999975 366789999998865432 23445556778999999999988887765 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEe
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 884 (1250)
|||||++||+||+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++ ..+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999777999999999985 44 67999999985 788888
Q ss_pred CCC
Q 000860 885 GKL 887 (1250)
Q Consensus 885 g~~ 887 (1250)
|+.
T Consensus 217 g~~ 219 (274)
T PRK13644 217 GEP 219 (274)
T ss_pred CCH
Confidence 885
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=348.23 Aligned_cols=195 Identities=32% Similarity=0.480 Sum_probs=169.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCc--ccccceEEeeccccccCCCCCHHHHHHHHHHccCCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDE--FQVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~--~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~ 78 (1250)
+++++||||||||||+|+|+|+.+|+ +|+|.++|.+... ...++.+||++|++.+++.+||+|||.|.+.+++..
T Consensus 33 i~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~ 109 (293)
T COG1131 33 IFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS 109 (293)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC
Confidence 57999999999999999999999875 9999999998754 456788999999999999999999999998887543
Q ss_pred cchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHH
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~ 158 (1250)
... .+.+++++++.+||.+..+++++ +||+|||||++||+
T Consensus 110 ~~~-----------------------------------~~~~~~~~l~~~~L~~~~~~~~~-----~lS~G~kqrl~ia~ 149 (293)
T COG1131 110 KEE-----------------------------------AEERIEELLELFGLEDKANKKVR-----TLSGGMKQRLSIAL 149 (293)
T ss_pred hhH-----------------------------------HHHHHHHHHHHcCCchhhCcchh-----hcCHHHHHHHHHHH
Confidence 100 01237789999999986566665 49999999999999
Q ss_pred HHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHHHH
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFF 238 (1250)
Q Consensus 159 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~~f 238 (1250)
||+++|++|||||||+||||.++.++++.|++++++.++||+++ +|...++..+||+|++|++|++++.|+.+++...+
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlis-sH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLS-THILEEAEELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEe-CCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 99999999999999999999999999999999998655788877 55688899999999999999999999999977654
Q ss_pred H
Q 000860 239 E 239 (1250)
Q Consensus 239 ~ 239 (1250)
.
T Consensus 229 ~ 229 (293)
T COG1131 229 G 229 (293)
T ss_pred c
Confidence 3
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=342.84 Aligned_cols=215 Identities=27% Similarity=0.357 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++. ..+++|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEEC
Confidence 4899999998742 12458999999999999999999999999999999999876 3589999999886
Q ss_pred Cc---ccccceEEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQ---STFARISGYVEQEDV-HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
.. ...++.+||++|++. .++..||.||+.+..... ..+.++.+++++++++.+||.+..++.++. |||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LS~ 143 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPHR-----LSG 143 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCccc-----CCH
Confidence 43 234567999999973 667789999998865432 234455567789999999999888887754 999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
|||||++|||+|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++ ..+|++++|.+ |++++
T Consensus 144 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (279)
T PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILE 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 899999999975 34 46999999985 78899
Q ss_pred eCCC
Q 000860 884 GGKL 887 (1250)
Q Consensus 884 ~g~~ 887 (1250)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13635 221 EGTP 224 (279)
T ss_pred ECCH
Confidence 8885
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=325.35 Aligned_cols=177 Identities=27% Similarity=0.359 Sum_probs=154.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccccceEEeeccccccCCCCCHHHHHHHHHHccCCCcc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGANDS 80 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~~ 80 (1250)
+++|+||||||||||||+|+|+.+|+ +|+|.++|.++ ..+...++||+|++.++|=+||+||+.++...++....
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v--~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~ 105 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPV--TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKA 105 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccc--CCCCCCEEEEeccCcccchhhHHhhheehhhccccchH
Confidence 47999999999999999999999875 99999999987 34567899999999999999999999999876542111
Q ss_pred hhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHHH
Q 000860 81 FAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI 160 (1250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~al 160 (1250)
+ .+.++++.|+.+||.+..|... ++|||||||||+|||||
T Consensus 106 -----------e------------------------~~~~a~~~L~~VgL~~~~~~~P-----~qLSGGMrQRVaiARAL 145 (248)
T COG1116 106 -----------E------------------------ARERAKELLELVGLAGFEDKYP-----HQLSGGMRQRVAIARAL 145 (248)
T ss_pred -----------h------------------------HHHHHHHHHHHcCCcchhhcCc-----cccChHHHHHHHHHHHH
Confidence 0 0123678999999999888665 55999999999999999
Q ss_pred hcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCC
Q 000860 161 VGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDG 223 (1250)
Q Consensus 161 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G 223 (1250)
+.+|+||+||||+++||+.++.++.+.|.++.++.++|++++ +|+.+|+..++|||++|.++
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllV-THdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLV-THDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEE-eCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999999999888888898886 56789999999999999984
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=338.93 Aligned_cols=214 Identities=23% Similarity=0.330 Sum_probs=180.9
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 36788988773 2358999999999999999999999999999999999876 35899999998753
Q ss_pred c----------------ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccccccc
Q 000860 730 Q----------------STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHAL 793 (1250)
Q Consensus 730 ~----------------~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~ 793 (1250)
. ..+++.++|++|++.+++..||.||+.+..... .....++.++.++++++.+|+.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 124567999999999999999999998764211 1223445556788999999998877776
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcce
Q 000860 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDEL 872 (1250)
Q Consensus 794 v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 872 (1250)
+. .||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++...+|++
T Consensus 144 ~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 PA-----QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred hh-----hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 64 49999999999999999999999999999999999999999999998765 899999999985 577889999
Q ss_pred eeeecCcEEEEeCCC
Q 000860 873 LLMKRGGRVIYGGKL 887 (1250)
Q Consensus 873 ~~l~~gg~~~~~g~~ 887 (1250)
++|++ |++++.|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 788888875
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=338.37 Aligned_cols=214 Identities=27% Similarity=0.316 Sum_probs=178.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 589999998763 235899999999999999999999999999999999976531 3589999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD----SLRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++ +|++||+.+..... +.+.++.+++++++++.+++. +..++.++
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~- 153 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPAL- 153 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChh-
Confidence 87532 134567999999988887 89999999875432 223444456688899999884 33444443
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++.+.+|++++|+
T Consensus 154 ----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 154 ----SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 5999999999999999999999999999999999999999999999864 899999999975 5678899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |++++.|+.
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 5 789888875
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=349.49 Aligned_cols=191 Identities=26% Similarity=0.404 Sum_probs=168.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccc-cceEEeeccccccCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV-QRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
+++++|||||||||||++|+|+..|+ +|+|.++|++++...+ +|.+|+|+|+..+||++||+||+.|+++.+....
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~ 109 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLK 109 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCC
Confidence 36899999999999999999999975 9999999999987644 6889999999999999999999999987432111
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
. ++ .+++++++|+.++|++..+..+ .+|||||||||+||||
T Consensus 110 ~--------------------~~--------------i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQqQRVALARA 150 (352)
T COG3842 110 K--------------------AE--------------IKARVEEALELVGLEGFADRKP-----HQLSGGQQQRVALARA 150 (352)
T ss_pred H--------------------HH--------------HHHHHHHHHHHcCchhhhhhCh-----hhhChHHHHHHHHHHH
Confidence 0 00 1135889999999999877665 4599999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhH
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~ 234 (1250)
|+.+|++||||||.|+||..-+.++..-|+++.++.|.|.|.+ +|+..|.+.++|||++|++|++...|+++++
T Consensus 151 L~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~V-THDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYV-THDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred hhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEE-ECCHHHHhhhccceEEccCCceeecCCHHHH
Confidence 9999999999999999999999999999999998889998887 5678999999999999999999999999998
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=336.80 Aligned_cols=217 Identities=24% Similarity=0.271 Sum_probs=179.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 478999998763 235899999999999999999999999999999999976531 3589999999
Q ss_pred ccCCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCCC
Q 000860 726 YPKEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS----LRHALVGSPG 798 (1250)
Q Consensus 726 ~~~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~v~~~~ 798 (1250)
.++.. ..+++.+||++|++.+++.+||+||+.+....+.. ....++.++.++++++.++|.+ ..++.+
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~---- 144 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPA---- 144 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc----
Confidence 87642 23466799999999888899999999886543211 1123444567889999999854 334444
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++...+|++++|++
T Consensus 145 -~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~- 220 (250)
T PRK14247 145 -GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK- 220 (250)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 35999999999999999999999999999999999999999999999864 899999999985 56788999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 221 G~i~~~g~~ 229 (250)
T PRK14247 221 GQIVEWGPT 229 (250)
T ss_pred CeEEEECCH
Confidence 788888875
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=338.21 Aligned_cols=214 Identities=27% Similarity=0.421 Sum_probs=180.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~ 66 (258)
T PRK13548 2 MLEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPL 66 (258)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEc
Confidence 368899998773 2358999999999999999999999999999999999865 3579999999875
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgG 805 (1250)
.. ..+++.++|++|++.+++.+||+||+.+..... ....++.++.++++++.+++.+..++.++. ||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG 138 (258)
T PRK13548 67 ADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYPQ-----LSGG 138 (258)
T ss_pred ccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCccc-----CCHH
Confidence 42 234567999999988888899999998864321 112233445688999999998877777754 9999
Q ss_pred HHHHHHHHHHHh------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 806 QRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRAVRNTV-DTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 806 erqr~~ia~~l~------~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
||||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||+++|++. ++...+|++++|.+
T Consensus 139 e~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~- 216 (258)
T PRK13548 139 EQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ- 216 (258)
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-
Confidence 999999999999 5999999999999999999999999999987 56899999999975 57778999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|++++.|+.
T Consensus 217 G~i~~~~~~ 225 (258)
T PRK13548 217 GRLVADGTP 225 (258)
T ss_pred CEEEeeCCH
Confidence 788888875
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=330.74 Aligned_cols=208 Identities=25% Similarity=0.383 Sum_probs=178.0
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 5778887663 2458999999999999999999999999999999999865 458999999987643
Q ss_pred ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH
Q 000860 731 STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRL 810 (1250)
Q Consensus 731 ~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~ 810 (1250)
.. ++.++|++|++.+++.+|++||+.+....+. .. ++.+.++++.+|+.+..+..++ .||||||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKAK-----QFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhHh-----hCCHHHHHHH
Confidence 22 3578999999988989999999987654321 11 2357788999999988777765 4999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCCC
Q 000860 811 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLG 888 (1250)
Q Consensus 811 ~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 888 (1250)
+|||+++.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|.+ |+++..|++.
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 9999999999999999999999999999999999999777999999999985 57788999999985 7888888764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=300.40 Aligned_cols=214 Identities=29% Similarity=0.411 Sum_probs=185.0
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
+...+++.+|+.. ...+|+|+|++|.+||.++++||||||||||||+++|..+ +..|.|.+||.++.
T Consensus 4 l~~~~~sl~y~g~-----------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~ 70 (259)
T COG4525 4 LNVSHLSLSYEGK-----------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIE 70 (259)
T ss_pred eehhheEEecCCc-----------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEecc
Confidence 4555666666432 2458999999999999999999999999999999999877 45799999999876
Q ss_pred cccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000860 730 QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKR 809 (1250)
Q Consensus 730 ~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr 809 (1250)
...- .-|.|+|++.++|.+||.+|+.|+.+++ ++++.++.+++.+.+..+||++..++.+- .||||||||
T Consensus 71 gPga--ergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~-----qLSGGmrQR 140 (259)
T COG4525 71 GPGA--ERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIW-----QLSGGMRQR 140 (259)
T ss_pred CCCc--cceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccceE-----eecchHHHH
Confidence 5332 2478999999999999999999999887 67889999999999999999999888774 599999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeec-CcEEEEeCCC
Q 000860 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKR-GGRVIYGGKL 887 (1250)
Q Consensus 810 ~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~-gg~~~~~g~~ 887 (1250)
+.|||||..+|++|+||||.++||.-+++.+++.|-++.+ .|+.++++||+.. |..-+++++++|+. .|+++..=++
T Consensus 141 vGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 141 VGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 9999999999999999999999999999999999888754 5999999999985 45557899999973 2577776665
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=340.56 Aligned_cols=215 Identities=25% Similarity=0.384 Sum_probs=182.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 68 (277)
T PRK13652 3 LIETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPI 68 (277)
T ss_pred eEEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4788999988742 2358999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQ---STFARISGYVEQEDV-HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
.. ..+++.++|++|++. .+...||.||+.+..... ..+.++.+++++++++.++|.+..++.+. .|||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 140 (277)
T PRK13652 69 TKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPH-----HLSG 140 (277)
T ss_pred CcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcc-----cCCH
Confidence 43 234567899999974 344679999998765422 23445556678999999999988887775 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 141 Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~ 218 (277)
T PRK13652 141 GEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVA 218 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998765 899999999985 57789999999986 78899
Q ss_pred eCCC
Q 000860 884 GGKL 887 (1250)
Q Consensus 884 ~g~~ 887 (1250)
.|+.
T Consensus 219 ~g~~ 222 (277)
T PRK13652 219 YGTV 222 (277)
T ss_pred ECCH
Confidence 8886
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=335.19 Aligned_cols=216 Identities=24% Similarity=0.342 Sum_probs=180.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 66 (242)
T TIGR03411 2 ILYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDL 66 (242)
T ss_pred eEEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeec
Confidence 368899998763 2358999999999999999999999999999999999865 3579999999875
Q ss_pred Ccc----cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCC-----CCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000860 729 EQS----TFARISGYVEQEDVHSPQVTIEESLWFSANLRLP-----KEISKDQRHEFVEEVMSLVELDSLRHALVGSPGS 799 (1250)
Q Consensus 729 ~~~----~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~-----~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~ 799 (1250)
... ..++.++|++|++.+++.+||+||+.+....... .....++.+++++++++.+|+.+..++.++.
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 143 (242)
T TIGR03411 67 TGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGL--- 143 (242)
T ss_pred CCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhh---
Confidence 431 1234699999999999999999999886432100 0012234456789999999998877777654
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |
T Consensus 144 --LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g 218 (242)
T TIGR03411 144 --LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-G 218 (242)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 999999999999999999999999999999999999999999999865 799999999975 57778999999985 7
Q ss_pred EEEEeCCC
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
+++..|+.
T Consensus 219 ~~~~~~~~ 226 (242)
T TIGR03411 219 SVLAEGSL 226 (242)
T ss_pred eEEeeCCH
Confidence 88888875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=336.91 Aligned_cols=217 Identities=25% Similarity=0.286 Sum_probs=179.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 725 (1250)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 578999998873 235899999999999999999999999999999999986542 3589999999
Q ss_pred ccCC-----cccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000860 726 YPKE-----QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS----LRHALVGS 796 (1250)
Q Consensus 726 ~~~~-----~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~v~~ 796 (1250)
.++. ...+++.++|++|++.+++.+||.||+.+....+. ...+.++..++++++++.+++.. ..++.+
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 147 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLNDYP-- 147 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccCh--
Confidence 8764 12345679999999999999999999988754321 11123444566888999998853 233433
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++...+|++++|+
T Consensus 148 ---~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 148 ---SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 35999999999999999999999999999999999999999999999865 799999999985 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |+++..|+.
T Consensus 223 ~-G~i~~~~~~ 232 (253)
T PRK14267 223 L-GKLIEVGPT 232 (253)
T ss_pred C-CEEEEeCCH
Confidence 5 788888875
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=336.12 Aligned_cols=219 Identities=21% Similarity=0.266 Sum_probs=177.2
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 36788888773 23589999999999999999999999999999999997411146899999998754
Q ss_pred cc---c-ccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCC----CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000860 730 QS---T-FARISGYVEQEDVHSPQVTIEESLWFSANLRLPK----EISKDQRHEFVEEVMSLVELD-SLRHALVGSPGSF 800 (1250)
Q Consensus 730 ~~---~-~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~----~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~~ 800 (1250)
.. . .+..++|++|++.+++.+|++|++.+........ ..+.++..++++++++.++|. ...++.++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 31 2 2334899999999999999999998764322110 112333456788999999997 45555543 1
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHh-hcceeeeecCc
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEA-FDELLLMKRGG 879 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gg 879 (1250)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+... +|++++|++ |
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-G 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-C
Confidence 49999999999999999999999999999999999999999999999877899999999985 45566 799999985 7
Q ss_pred EEEEeCCC
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 88888875
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=340.75 Aligned_cols=213 Identities=25% Similarity=0.385 Sum_probs=179.2
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 67899998773 2358999999999999999999999999999999999876 35899999998763
Q ss_pred c-----ccccceEEEEcCCCCC-CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000860 730 Q-----STFARISGYVEQEDVH-SPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 730 ~-----~~~~~~~~yv~q~~~~-~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lS 803 (1250)
. ..+++.++|++|++.. ++..|+.||+.+..... +...++..++++++++.+++.+..++.++ .||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQ-----CLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCch-----hCC
Confidence 1 1345679999999753 34568999998764332 22344455678899999999888777665 499
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++...+|++++|.+ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999998777899999999985 56688999999985 78888
Q ss_pred eCCC
Q 000860 884 GGKL 887 (1250)
Q Consensus 884 ~g~~ 887 (1250)
.|+.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 8875
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=308.81 Aligned_cols=191 Identities=27% Similarity=0.323 Sum_probs=169.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecC--cccccceEEeeccccccCCCCCHHHHHHHHHHccCCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELD--EFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~--~~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~ 78 (1250)
+++|+|||||||||+|++|++++.|+ +|.|+++|.+.. +...++.+|.++.+..++..+|++|||.|.+++.+..
T Consensus 30 i~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~ 106 (245)
T COG4555 30 ITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLS 106 (245)
T ss_pred EEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhhh
Confidence 58999999999999999999999875 999999999874 3356889999998889999999999999998876543
Q ss_pred cchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHH
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~ 158 (1250)
.. +.+.+++++.+.|+|.++.|+++|+ +|-|+||||+|||
T Consensus 107 ~~-----------------------------------~~kari~~l~k~l~l~~~~~rRv~~-----~S~G~kqkV~iAR 146 (245)
T COG4555 107 RK-----------------------------------EIKARIAELSKRLQLLEYLDRRVGE-----FSTGMKQKVAIAR 146 (245)
T ss_pred hh-----------------------------------HHHHHHHHHHHHhChHHHHHHHHhh-----hchhhHHHHHHHH
Confidence 21 1123477889999999999999987 9999999999999
Q ss_pred HHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 159 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||+++|++++|||||||||..+...+.+.++++.. .|+++|.+ +|..+++..+||+|+++++|++++.|+.+++.+
T Consensus 147 Alvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFS-SH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 147 ALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFS-SHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEe-cccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999999999999999999999999864 48999998 567899999999999999999999999998754
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=315.30 Aligned_cols=199 Identities=26% Similarity=0.380 Sum_probs=166.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc------cccceEEeeccccccCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~ 74 (1250)
+++|+|||||||||||++|.|+.+++ +|+|.+||.++... .+++.+|+++|++.+.+.+||.+|+..+...
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~ 108 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG 108 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcc
Confidence 58999999999999999999999865 99999999877432 3578899999999999999999999887532
Q ss_pred cCCCcchhhHhHhh-hHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchh
Q 000860 75 QGANDSFAAYIKDL-TRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKR 153 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqR 153 (1250)
+. +.+.....+ +..+ +..+-+.|+.+|+.+.+.++.+. |||||+||
T Consensus 109 ~~---s~~~slfglfsk~d-------------------------k~~Al~aLervgi~~~A~qra~~-----LSGGQQQR 155 (258)
T COG3638 109 YT---STWRSLFGLFSKED-------------------------KAQALDALERVGILDKAYQRAST-----LSGGQQQR 155 (258)
T ss_pred cc---hHHHHHhCCCCHHH-------------------------HHHHHHHHHHcCcHHHHHHHhcc-----CCcchhHH
Confidence 21 111111111 1111 11245689999999888888765 99999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhh
Q 000860 154 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233 (1250)
Q Consensus 154 v~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~ 233 (1250)
|+|||||+.+|+|+|-|||+++|||.+++++++.|++++++.|.|+|+.+|+ .+-+.++||||+-|++|+++|+|++++
T Consensus 156 VaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~-vdlA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 156 VAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDLAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred HHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHHhhheEecCCcEEEeCChhh
Confidence 9999999999999999999999999999999999999999999999999776 677888999999999999999999998
Q ss_pred HHH
Q 000860 234 VLE 236 (1250)
Q Consensus 234 ~~~ 236 (1250)
+.+
T Consensus 235 l~~ 237 (258)
T COG3638 235 LTD 237 (258)
T ss_pred hhH
Confidence 754
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=349.53 Aligned_cols=204 Identities=23% Similarity=0.335 Sum_probs=176.8
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCc----cCCc---c---cc-cceEEEEc
Q 000860 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY----PKEQ---S---TF-ARISGYVE 741 (1250)
Q Consensus 673 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~----~~~~---~---~~-~~~~~yv~ 741 (1250)
+...+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|. ++.. . .. ++.++||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 45678999999999999999999999999999999999876 45799999996 3221 1 12 25799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCc
Q 000860 742 QEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPS 821 (1250)
Q Consensus 742 q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~ 821 (1250)
|++.++|.+||+||+.+....+ ..++++.+++++++++.+||.+..++.++. ||||||||++|||+|+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~~-----LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPGE-----LSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999886543 234556677889999999999888887754 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCCC
Q 000860 822 IIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLG 888 (1250)
Q Consensus 822 il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 888 (1250)
||+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|.+ |+++..|+.+
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999999999999998764 899999999985 57789999999985 7899988863
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=337.54 Aligned_cols=217 Identities=21% Similarity=0.263 Sum_probs=180.8
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 588999998773 2468999999999999999999999999999999999866 4589999999876
Q ss_pred Ccc---c-ccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCC----------CCC--CHHHHHHHHHHHHHHcCCcccccc
Q 000860 729 EQS---T-FARISGYVEQEDVHSPQVTIEESLWFSANLRLP----------KEI--SKDQRHEFVEEVMSLVELDSLRHA 792 (1250)
Q Consensus 729 ~~~---~-~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~----------~~~--~~~~~~~~v~~~l~~l~l~~~~~~ 792 (1250)
... . .+..++|++|++.+++.+||+||+.+....... ... ...+..+.++++++.+|+.+..++
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 234589999999999999999999986432110 000 112334567888999999887777
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcc
Q 000860 793 LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDE 871 (1250)
Q Consensus 793 ~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~ 871 (1250)
.++. ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|+
T Consensus 150 ~~~~-----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QAGN-----LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Chhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 7654 9999999999999999999999999999999999999999999998765 899999999975 57788999
Q ss_pred eeeeecCcEEEEeCCC
Q 000860 872 LLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 872 v~~l~~gg~~~~~g~~ 887 (1250)
+++|++ |++++.|+.
T Consensus 224 i~~l~~-g~i~~~~~~ 238 (255)
T PRK11300 224 IYVVNQ-GTPLANGTP 238 (255)
T ss_pred EEEEEC-CeEEecCCH
Confidence 999985 788888875
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=341.35 Aligned_cols=218 Identities=24% Similarity=0.361 Sum_probs=179.2
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++... ...+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEc
Confidence 478999998874210 012468999999999999999999999999999999999866 3589999999875
Q ss_pred Cc-------ccccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000860 729 EQ-------STFARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHALVGSPG 798 (1250)
Q Consensus 729 ~~-------~~~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~ 798 (1250)
.. ..+++.++|++|++ .+++ .||+||+.+..... ..+.++.+++++++++.++|. ...++.++
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 144 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPF--- 144 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcc---
Confidence 42 23456799999996 3444 69999998865432 223445556788999999997 35566654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++...+|++++|++
T Consensus 145 --~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~- 220 (280)
T PRK13649 145 --ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK- 220 (280)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-
Confidence 49999999999999999999999999999999999999999999999777899999999985 56778999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 221 G~i~~~g~~ 229 (280)
T PRK13649 221 GKLVLSGKP 229 (280)
T ss_pred CEEEEeCCH
Confidence 788888875
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=330.18 Aligned_cols=213 Identities=25% Similarity=0.365 Sum_probs=177.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++... ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~~---------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQGE---------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCCC---------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEc
Confidence 589999998874210 11358999999999999999999999999999999999876 3589999999876
Q ss_pred Cccc------c-cceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000860 729 EQST------F-ARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFG 801 (1250)
Q Consensus 729 ~~~~------~-~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~ 801 (1250)
.... . ++.++|++|++.+++.+||.||+.+....+ .....+.+++++++++.+++.+..++.+. .
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPA-----Q 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----h
Confidence 4311 1 257999999999999999999998865432 12334456778999999999887777765 4
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 802 lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |+|||+++|++. .+ ..+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 899999999985 34 56999999985 67
Q ss_pred EEE
Q 000860 881 VIY 883 (1250)
Q Consensus 881 ~~~ 883 (1250)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 654
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=339.22 Aligned_cols=215 Identities=24% Similarity=0.376 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++. +++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEec
Confidence 6899999987731 13468999999999999999999999999999999999876 3579999999886
Q ss_pred Cc---ccccceEEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQ---STFARISGYVEQEDV-HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
.. ..+++.++|++|++. .++.+||+||+.+..... ..+.++.+++++++++.++|.+..++.++ .|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQ-----NLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcc-----cCCH
Confidence 43 235678999999974 567889999998865422 22344456678999999999988888775 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|++. ++ ..+|++++|.+ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998766 589999999986 34 57999999985 78888
Q ss_pred eCCC
Q 000860 884 GGKL 887 (1250)
Q Consensus 884 ~g~~ 887 (1250)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8875
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=338.01 Aligned_cols=218 Identities=24% Similarity=0.358 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 66 (255)
T PRK11231 2 TLRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPI 66 (255)
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEh
Confidence 478899998773 2468999999999999999999999999999999999865 3579999999875
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLP-KEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
.. ..+++.++|++|++.+++.+|+.|++.++...... .....++..++++++++.+++.+..++.++ .|||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 141 (255)
T PRK11231 67 SMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLT-----DLSG 141 (255)
T ss_pred HHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcc-----cCCH
Confidence 32 23456799999999888889999999875311000 011123345568889999999887777765 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEe
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 884 (1250)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |+++..
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (255)
T PRK11231 142 GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQ 219 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEE
Confidence 9999999999999999999999999999999999999999998777999999999985 57889999999985 788888
Q ss_pred CCCC
Q 000860 885 GKLG 888 (1250)
Q Consensus 885 g~~~ 888 (1250)
|+.+
T Consensus 220 ~~~~ 223 (255)
T PRK11231 220 GTPE 223 (255)
T ss_pred cCHH
Confidence 8763
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=328.60 Aligned_cols=208 Identities=25% Similarity=0.395 Sum_probs=172.9
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++. +. .|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~-------------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~ 64 (211)
T cd03298 2 RLDKIRFSYGE-------------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTA 64 (211)
T ss_pred EEEeEEEEeCC-------------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCc
Confidence 57888887631 11 29999999999999999999999999999999876 357999999987643
Q ss_pred -ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000860 731 -STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKR 809 (1250)
Q Consensus 731 -~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr 809 (1250)
...++.++|++|++.+++.+||+||+.+....+. .. .++.+++++++++.+++.+..++.+. .||||||||
T Consensus 65 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 136 (211)
T cd03298 65 APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLPG-----ELSGGERQR 136 (211)
T ss_pred CCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHH
Confidence 2234679999999999999999999987543211 11 12345568899999999887777765 499999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 810 ~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 99999999999999999999999999999999999998754 899999999974 56678999999985 7776653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=338.21 Aligned_cols=220 Identities=26% Similarity=0.376 Sum_probs=182.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEEECCcc
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYP 727 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 727 (1250)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 588999998773 246899999999999999999999999999999999986543 236999999987
Q ss_pred CCc--------ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCC-----CCCHHHHHHHHHHHHHHcCCcccccccc
Q 000860 728 KEQ--------STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPK-----EISKDQRHEFVEEVMSLVELDSLRHALV 794 (1250)
Q Consensus 728 ~~~--------~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~l~l~~~~~~~v 794 (1250)
+.. ...++.++|++|++.+++.+||+||+.+......+. ....++.+++++++++.+|+.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 123557899999999999999999998754211110 1112334567899999999988777776
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhccee
Q 000860 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELL 873 (1250)
Q Consensus 795 ~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~ 873 (1250)
+ .||||||||++|||+|+.+|++|+|||||+|||..++..+.+.|+++++ .|+|||+++|++. ++...+|+++
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 5 4999999999999999999999999999999999999999999999975 4899999999985 4778899999
Q ss_pred eeecCcEEEEeCCCC
Q 000860 874 LMKRGGRVIYGGKLG 888 (1250)
Q Consensus 874 ~l~~gg~~~~~g~~~ 888 (1250)
+|.+ |++++.|+.+
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9985 7888888763
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=344.06 Aligned_cols=225 Identities=24% Similarity=0.274 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.+....... ...+.+.+|+|||++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 589999999885321100 001235699999999999999999999999999999999998763 579999999886
Q ss_pred Cc------ccccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000860 729 EQ------STFARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-LRHALVGSPGS 799 (1250)
Q Consensus 729 ~~------~~~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~v~~~~~ 799 (1250)
.. ..+++.++||+|++ .+.|.+||.+++........ ...+++.++++.++++.+||.+ ..++.+.
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~---- 153 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRYPH---- 153 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCCCc----
Confidence 43 13456799999997 58899999999877654321 2345566678999999999963 5566554
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
.||||||||++|||||+.+|++|++||||++||..++..+++.|+++.++ |.|||++||+.+ .+...+|++++|.+
T Consensus 154 -~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 154 -MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 59999999999999999999999999999999999999999999998764 999999999975 46678999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|++++.|+.
T Consensus 231 G~ive~g~~ 239 (327)
T PRK11308 231 GRCVEKGTK 239 (327)
T ss_pred CEEEEECCH
Confidence 799999985
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=316.27 Aligned_cols=193 Identities=27% Similarity=0.401 Sum_probs=163.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc------cccceEEeeccccccCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~ 74 (1250)
+++|+||||||||||||+|.|+++|+ +|+|.++|.++... ..++++|+++|+-.+|..+||.||+.|..+-
T Consensus 36 i~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre 112 (263)
T COG1127 36 ILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE 112 (263)
T ss_pred EEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh
Confidence 47999999999999999999999975 99999999998432 3578899999999999999999999997643
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccc-cccccCCCccccCccccchh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLC-SDTVVGSEMLRGVSGGQKKR 153 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqkqR 153 (1250)
+..- +.+.+ ++.+..-|+..||... .+... .+||||++||
T Consensus 113 ~~~l--------------------p~~~i--------------~~lv~~KL~~VGL~~~~~~~~P-----sELSGGM~KR 153 (263)
T COG1127 113 HTKL--------------------PESLI--------------RELVLMKLELVGLRGAAADLYP-----SELSGGMRKR 153 (263)
T ss_pred hccC--------------------CHHHH--------------HHHHHHHHHhcCCChhhhhhCc-----hhhcchHHHH
Confidence 2111 10111 1124455888999765 55444 4599999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhh
Q 000860 154 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233 (1250)
Q Consensus 154 v~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~ 233 (1250)
++||||++.+|+++++||||+||||.++..+-+.++++.+..+.|++++ +|+..++...+||+++|.+|+|++.|++++
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~V-THDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMV-THDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEE-ECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998888888886 566899999999999999999999999999
Q ss_pred HHH
Q 000860 234 VLE 236 (1250)
Q Consensus 234 ~~~ 236 (1250)
+.+
T Consensus 233 l~~ 235 (263)
T COG1127 233 LLA 235 (263)
T ss_pred HHh
Confidence 865
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=338.72 Aligned_cols=217 Identities=31% Similarity=0.411 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 589999998773 2368999999999999999999999999999999999865 3579999999875
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLP-KEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
.. ..+++.++|++|++.+++.+||.||+.+....... ........+++++++++.+++.+..++.++. |||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDS-----LSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCccc-----CCH
Confidence 32 23456799999998888899999999875321100 0111223346688999999998877777754 999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
|||||++|||+|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998765 899999999985 57788999999985 78888
Q ss_pred eCCC
Q 000860 884 GGKL 887 (1250)
Q Consensus 884 ~g~~ 887 (1250)
.|+.
T Consensus 229 ~~~~ 232 (265)
T PRK10575 229 QGTP 232 (265)
T ss_pred ecCH
Confidence 8875
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=332.21 Aligned_cols=201 Identities=28% Similarity=0.453 Sum_probs=170.6
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc--ccccceEEEEc-CCCCCCCC
Q 000860 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ--STFARISGYVE-QEDVHSPQ 749 (1250)
Q Consensus 673 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~--~~~~~~~~yv~-q~~~~~~~ 749 (1250)
+.+++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ..+++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 34679999999999999999999999999999999999876 358999999986432 23456799997 55677889
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000860 750 VTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPT 829 (1250)
Q Consensus 750 ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPT 829 (1250)
+||+|++.+..... ....++..++++++++.+++.+..++.++ .||||||||++||++|+.+|++++|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998876543 22344455678889999999988888775 49999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 830 SGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 830 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998764 899999999985 56788999999985 7877654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=322.71 Aligned_cols=196 Identities=35% Similarity=0.617 Sum_probs=163.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEEECCcc
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYP 727 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 727 (1250)
.+.|+|++|.|+.+ .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57999999998653 13457999999999999999999999999999999999986532 468999999987
Q ss_pred CCc--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000860 728 KEQ--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 728 ~~~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgG 805 (1250)
+.. ...++.++|++|++.+++.+||+||+.+..... .+..+ ..||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~-----~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFV-----RGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccch-----hhCCHH
Confidence 643 235667999999999999999999998764211 22333 359999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEe
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 884 (1250)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999998765 678777776654567889999999986 788765
Q ss_pred C
Q 000860 885 G 885 (1250)
Q Consensus 885 g 885 (1250)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=335.25 Aligned_cols=217 Identities=23% Similarity=0.308 Sum_probs=179.6
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 725 (1250)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 478999998873 235899999999999999999999999999999999976532 2589999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD----SLRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++.+||+||+.+....+. ..+.++.+++++++++.+++. +..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 146 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPG-- 146 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc--
Confidence 87531 2345679999999999999999999988754321 113344556788899999984 2334444
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 147 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 147 ---GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 35999999999999999999999999999999999999999999999864 689999999975 5778899999997
Q ss_pred -----cCcEEEEeCCC
Q 000860 877 -----RGGRVIYGGKL 887 (1250)
Q Consensus 877 -----~gg~~~~~g~~ 887 (1250)
+.|++++.|+.
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 24899998875
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=343.04 Aligned_cols=221 Identities=18% Similarity=0.271 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC-C-eeEEEEEECCc
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG-G-YIEGDIKISGY 726 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~-~-~~~G~i~~~g~ 726 (1250)
.++++|+++.+.... +..++|+||||+|++||++||+|+||||||||+++|+|..++ + +.+|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 3 LLNVDKLSVHFGDES---------APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred eEEEeCeEEEECCCC---------ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 478999999885321 124699999999999999999999999999999999997642 2 35899999998
Q ss_pred cCCcc---c----ccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc---ccccc
Q 000860 727 PKEQS---T----FARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL---RHALV 794 (1250)
Q Consensus 727 ~~~~~---~----~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~---~~~~v 794 (1250)
++... . .++.++||+|++ .+.|.+||.+++....... .+...++.++++.++++.+||.+. .+..+
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p 151 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH--QGGNKKTRRQRAIDLLNQVGIPDPASRLDVYP 151 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhCCc
Confidence 86431 1 224699999998 4788999999886654332 123455667788999999999753 34444
Q ss_pred cCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhccee
Q 000860 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELL 873 (1250)
Q Consensus 795 ~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~ 873 (1250)
..|||||||||+|||||+.+|++|++||||+|||+.++..+++.|+++.+ .|.|+|++||+.+ .+.+.+|+|+
T Consensus 152 -----~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~ 225 (326)
T PRK11022 152 -----HQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKII 225 (326)
T ss_pred -----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 35999999999999999999999999999999999999999999999976 4899999999975 4668899999
Q ss_pred eeecCcEEEEeCCC
Q 000860 874 LMKRGGRVIYGGKL 887 (1250)
Q Consensus 874 ~l~~gg~~~~~g~~ 887 (1250)
+|.+ |+++..|+.
T Consensus 226 vm~~-G~ive~g~~ 238 (326)
T PRK11022 226 VMYA-GQVVETGKA 238 (326)
T ss_pred EEEC-CEEEEECCH
Confidence 9985 899999885
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=338.44 Aligned_cols=214 Identities=27% Similarity=0.370 Sum_probs=180.6
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.+.. ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYPD------------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 678999988731 2358999999999999999999999999999999999876 35799999998763
Q ss_pred c-----ccccceEEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000860 730 Q-----STFARISGYVEQEDV-HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 730 ~-----~~~~~~~~yv~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lS 803 (1250)
. ...++.++|++|++. .+...||.|++.+..... ....++..+++.++++.++|.+..++.++. ||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPHH-----LS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChhh-----CC
Confidence 1 124567999999963 334579999998764321 233445566788999999999888887754 99
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++...+|++++|++ |+++.
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999777999999999975 56778999999986 78888
Q ss_pred eCCC
Q 000860 884 GGKL 887 (1250)
Q Consensus 884 ~g~~ 887 (1250)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 8886
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=337.85 Aligned_cols=218 Identities=22% Similarity=0.311 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEh
Confidence 689999999874 2358999999999999999999999999999999999876 3579999999875
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLP-KEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
.. ...++.++|++|++.+++..|++|++.+......+ .....+..+++++++++.++|.+..++.+. .|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVD-----TLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCh
Confidence 43 23456799999999988899999999865211100 001112334568899999999887777765 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.+.+|++++|.+ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999985 57889999999985 78888
Q ss_pred eCCCC
Q 000860 884 GGKLG 888 (1250)
Q Consensus 884 ~g~~~ 888 (1250)
.|+..
T Consensus 225 ~g~~~ 229 (265)
T PRK10253 225 QGAPK 229 (265)
T ss_pred eCCHH
Confidence 88863
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=335.37 Aligned_cols=216 Identities=25% Similarity=0.330 Sum_probs=178.2
Q ss_pred eeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CeeEEEEEEC
Q 000860 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKT--G-GYIEGDIKIS 724 (1250)
Q Consensus 648 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~ 724 (1250)
..++++|+++.++ ++++|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++
T Consensus 12 ~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~ 78 (260)
T PRK10744 12 SKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLD 78 (260)
T ss_pred ceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEEC
Confidence 4689999998873 2358999999999999999999999999999999999754 1 1357999999
Q ss_pred CccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc----cccccccc
Q 000860 725 GYPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD----SLRHALVG 795 (1250)
Q Consensus 725 g~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~v~ 795 (1250)
|.++.. ..+++.++|++|++.+++ .||+||+.+...... ..+.++.+++++++++.+++. +..+..+
T Consensus 79 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 154 (260)
T PRK10744 79 GENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQSG- 154 (260)
T ss_pred CEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCC-
Confidence 987632 234677999999988887 899999987654321 233444556788999999984 2334444
Q ss_pred CCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeee
Q 000860 796 SPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLM 875 (1250)
Q Consensus 796 ~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 875 (1250)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|++. ++...+|++++|
T Consensus 155 ----~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l 228 (260)
T PRK10744 155 ----YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAFM 228 (260)
T ss_pred ----CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 3599999999999999999999999999999999999999999999985 4789999999975 567789999999
Q ss_pred ecCcEEEEeCCC
Q 000860 876 KRGGRVIYGGKL 887 (1250)
Q Consensus 876 ~~gg~~~~~g~~ 887 (1250)
++ |+++..|+.
T Consensus 229 ~~-G~i~~~g~~ 239 (260)
T PRK10744 229 YL-GELIEFGNT 239 (260)
T ss_pred EC-CEEEEeCCH
Confidence 85 788888875
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=336.29 Aligned_cols=224 Identities=22% Similarity=0.327 Sum_probs=181.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++...... ..+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDL 75 (265)
T ss_pred eEEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEc
Confidence 378899998874210000 0113569999999999999999999999999999999999876 4589999999876
Q ss_pred Ccc------cccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000860 729 EQS------TFARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHALVGSPGS 799 (1250)
Q Consensus 729 ~~~------~~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~ 799 (1250)
... .+++.++|++|++ .+.+.+||+|++.+..... .....++.+++++++++.+|+. +..+..++
T Consensus 76 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 149 (265)
T TIGR02769 76 YQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLPR---- 149 (265)
T ss_pred cccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCChh----
Confidence 431 1356799999996 4667899999997754321 1123334456788999999996 56666654
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+...+|++++|++
T Consensus 150 -~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~- 226 (265)
T TIGR02769 150 -QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK- 226 (265)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-
Confidence 49999999999999999999999999999999999999999999998765 899999999975 56678999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|++++.|+.
T Consensus 227 G~i~~~g~~ 235 (265)
T TIGR02769 227 GQIVEECDV 235 (265)
T ss_pred CEEEEECCH
Confidence 799998886
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=336.89 Aligned_cols=216 Identities=25% Similarity=0.340 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 5899999988742 12358999999999999999999999999999999999876 3589999999876
Q ss_pred Cc---ccccceEEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQ---STFARISGYVEQEDV-HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
.. ..+++.++|++|++. +++..|+++|+.+..... ....++..+.++++++.+++.+..++.++ .|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPN-----ALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCcc-----cCCH
Confidence 43 235667999999974 677889999998864322 22344455678899999999887777664 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++. .+|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 454 4999999985 78988
Q ss_pred eCCCC
Q 000860 884 GGKLG 888 (1250)
Q Consensus 884 ~g~~~ 888 (1250)
.|+.+
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 88863
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=333.77 Aligned_cols=215 Identities=27% Similarity=0.355 Sum_probs=176.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC---CCeeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKT---GGYIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~---~~~~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|... +.+.+|+|.++|
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14242 6 KMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG 72 (253)
T ss_pred EEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECC
Confidence 589999998873 2358999999999999999999999999999999999642 113589999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL----RHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++ .||+||+.+....+. ....+..+++++++++.+++.+. .++.+
T Consensus 73 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 147 (253)
T PRK14242 73 ENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHESA-- 147 (253)
T ss_pred EEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc--
Confidence 87642 234567999999998887 599999988754321 11233445678889999998542 23333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 148 ---~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14242 148 ---LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFY 222 (253)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEE
Confidence 35999999999999999999999999999999999999999999999854 799999999985 5678899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |+++..|+.
T Consensus 223 ~-G~i~~~g~~ 232 (253)
T PRK14242 223 M-GKLIEVGPT 232 (253)
T ss_pred C-CEEEEeCCH
Confidence 6 788888775
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=331.32 Aligned_cols=211 Identities=27% Similarity=0.370 Sum_probs=174.9
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 35788888763 2368999999999999999999999999999999999876 35899999998754
Q ss_pred cc----cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCcCCH
Q 000860 730 QS----TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVE-LDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 730 ~~----~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~-l~~~~~~~v~~~~~~~lSg 804 (1250)
.. ..++.++|++|++.+++.+|++|++.+....+ ... ..+..+++++.++ +.+..++.++ .|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~~~-----~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRRGG-----DLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCChh-----hCCH
Confidence 31 12457999999999999999999998875432 111 1234567777776 5665666654 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++...+|++++|.+ |+++.
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~ 212 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVA 212 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999975 56678999999985 78888
Q ss_pred eCCCC
Q 000860 884 GGKLG 888 (1250)
Q Consensus 884 ~g~~~ 888 (1250)
.|+.+
T Consensus 213 ~~~~~ 217 (230)
T TIGR03410 213 SGAGD 217 (230)
T ss_pred ECCHH
Confidence 88864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=330.20 Aligned_cols=212 Identities=29% Similarity=0.431 Sum_probs=180.8
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 5788888763 2359999999999999999999999999999999999866 357999999987643
Q ss_pred c-cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000860 731 S-TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKR 809 (1250)
Q Consensus 731 ~-~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr 809 (1250)
. ..++.++|++|++.+++.+|+.||+.+....+ ..+.....+.++++++.+++.+..++.++ .|||||+||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPN-----QLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHHHH
Confidence 2 23567999999999999999999998765432 12333445677899999999877777765 499999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 810 ~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
++|||+|+.+|++++|||||+|||..++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998765 899999999985 57788999999985 788888875
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=319.12 Aligned_cols=190 Identities=60% Similarity=0.964 Sum_probs=162.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++... +++++|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCCC---------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 478999998875310 12468999999999999999999999999999999999643224689999999876
Q ss_pred CcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000860 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerq 808 (1250)
. ..+++.++|++|++.+++.+||+||+.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 5 345677999999998999999999998653110 39999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 809 r~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
|++|||+|+.+|++++|||||+|||+.++..+.+.|+++++.|+|||+++|+++.++...+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999887799999999998634678899999998547888765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=329.02 Aligned_cols=212 Identities=28% Similarity=0.398 Sum_probs=180.8
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
.++|+++.++ .+.+|+|+|++++|||+++|+||||||||||+++|+|..+ +..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 5788888763 2369999999999999999999999999999999999876 357999999987643
Q ss_pred c-cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000860 731 S-TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKR 809 (1250)
Q Consensus 731 ~-~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr 809 (1250)
. ..++.++|++|++.+++.+|++||+.+....+ ..+.....+.++++++.+|+.+..++.+. .||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKPS-----QLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHH
Confidence 1 23567999999999988999999998876543 12334445678899999999888877764 499999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 810 ~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |++.+.|+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999998764 899999999984 57788999999985 788888764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=325.05 Aligned_cols=209 Identities=22% Similarity=0.333 Sum_probs=175.0
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++ .+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~---------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 64 (213)
T TIGR01277 2 ALDKVRYEYE---------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTG 64 (213)
T ss_pred eEEeeeEEeC---------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccc
Confidence 5788887663 13579999999999999999999999999999999876 358999999987643
Q ss_pred -ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000860 731 -STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKR 809 (1250)
Q Consensus 731 -~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr 809 (1250)
...++.++|++|++.+++.+|+.||+.+...... . ...+.+++++++++.+|+.+..++.+. .||||||||
T Consensus 65 ~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 136 (213)
T TIGR01277 65 LAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLPE-----QLSGGQRQR 136 (213)
T ss_pred CChhccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCcc-----cCCHHHHHH
Confidence 2345679999999999999999999987543211 1 112234567889999999887777765 499999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCC
Q 000860 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 810 ~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
++|||+|+.+|++++|||||+|||..++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|.+ |+++..|.
T Consensus 137 l~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 99999999999999999999999999999999999998764 899999999975 56678999999985 78887764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=332.18 Aligned_cols=215 Identities=22% Similarity=0.310 Sum_probs=176.2
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC---CCCeeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRK---TGGYIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~---~~~~~~G~i~~~g 725 (1250)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 578999998773 235899999999999999999999999999999999952 2212479999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL----RHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++ .|++||+.+....+. ....+...+.++++++.+++.+. .+..+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 144 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKESA-- 144 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhCCc--
Confidence 87642 234567999999988886 699999988654331 11223345668889999998642 33333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 145 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14245 145 ---FALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFY 219 (250)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 3599999999999999999999999999999999999999999999985 4899999999985 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |++++.|+.
T Consensus 220 ~-G~~~~~~~~ 229 (250)
T PRK14245 220 M-GEMVEYDDT 229 (250)
T ss_pred C-CEEEEECCH
Confidence 5 789999875
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=335.51 Aligned_cols=216 Identities=26% Similarity=0.385 Sum_probs=179.7
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 57889988773 2368999999999999999999999999999999999866 35799999998754
Q ss_pred c---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000860 730 Q---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLP-KEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 730 ~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgG 805 (1250)
. ...++.++|++|++.+++.+||+||+.+....... .....++..+++.++++.+++.+..++.++ .||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS-----TLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHH
Confidence 3 23355789999998778889999999875311000 011122334568899999999887777765 49999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999777899999999985 57789999999985 7888888
Q ss_pred CC
Q 000860 886 KL 887 (1250)
Q Consensus 886 ~~ 887 (1250)
+.
T Consensus 220 ~~ 221 (256)
T TIGR03873 220 PP 221 (256)
T ss_pred CH
Confidence 75
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=325.36 Aligned_cols=189 Identities=23% Similarity=0.395 Sum_probs=162.9
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC---c----ccccceEEEEcCCCCCC
Q 000860 675 LQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE---Q----STFARISGYVEQEDVHS 747 (1250)
Q Consensus 675 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~---~----~~~~~~~~yv~q~~~~~ 747 (1250)
+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 458999999999999999999999999999999999876 35899999998743 1 12456799999999999
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000860 748 PQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDE 827 (1250)
Q Consensus 748 ~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDE 827 (1250)
+.+|++||+.+..... .....+..++++++++.+++.+..++.+. .||||||||++|||+|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIY-----ELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999865432 22344456678899999999888777765 499999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeee
Q 000860 828 PTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLM 875 (1250)
Q Consensus 828 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 875 (1250)
||+|||+.+...+.+.|+++.++|+|||+++|++. ....+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998777999999999974 45689998875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=334.11 Aligned_cols=216 Identities=25% Similarity=0.307 Sum_probs=177.7
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CeeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 689999998873 23589999999999999999999999999999999997643 13589999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS----LRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++. ||.||+.+....+.. ..+..+..++++++++.+++.+ ..++.+
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 161 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEPG-- 161 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCCc--
Confidence 87642 2346679999999888875 999999987543311 1123344566888999999964 233333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+...+|++++|+
T Consensus 162 ---~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 162 ---TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 35999999999999999999999999999999999999999999999865 789999999975 5668899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |+++..|+.
T Consensus 237 ~-G~i~~~g~~ 246 (267)
T PRK14235 237 L-GNLVEVGDT 246 (267)
T ss_pred C-CEEEEeCCH
Confidence 5 788888874
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=337.76 Aligned_cols=219 Identities=23% Similarity=0.335 Sum_probs=182.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++.... ...+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~-------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNEE-------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCCC-------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 5899999998853110 013469999999999999999999999999999999999876 3589999999876
Q ss_pred Cc----ccccceEEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000860 729 EQ----STFARISGYVEQEDV-HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 729 ~~----~~~~~~~~yv~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lS 803 (1250)
.. ...++.+||++|++. .+...||.|++.|..... ..+..+.+++++++++.+||.+..++.++. ||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPHL-----LS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCccc-----CC
Confidence 43 234678999999974 233569999998875432 234455567789999999999888887754 99
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 882 (1250)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++. .+|++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 999999999986 344 5999999985 7888
Q ss_pred EeCCC
Q 000860 883 YGGKL 887 (1250)
Q Consensus 883 ~~g~~ 887 (1250)
..|+.
T Consensus 224 ~~g~~ 228 (280)
T PRK13633 224 MEGTP 228 (280)
T ss_pred EecCH
Confidence 88876
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=368.17 Aligned_cols=123 Identities=24% Similarity=0.335 Sum_probs=103.2
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCCHHHHHHHHHHHHHhhCC---cEEE
Q 000860 749 QVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-LRHALVGSPGSFGLSTEQRKRLTIAVELVANP---SIIF 824 (1250)
Q Consensus 749 ~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p---~il~ 824 (1250)
.+||.|++.|...+. . . ....+.++.+||.. ..+..+. .||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~---~-----i-~~~l~~L~~vgL~~l~l~~~~~-----tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP---K-----I-ARKLQTLVDVGLGYIKLGQPAT-----TLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch---h-----h-hHHHHHHHHCCCCcccccCCcc-----cCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 378999988876542 1 1 22467889999986 3555554 49999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee-----cCcEEEEeCCC
Q 000860 825 MDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK-----RGGRVIYGGKL 887 (1250)
Q Consensus 825 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~ 887 (1250)
|||||+|||+.+...+++.|+++.++|.|||+++|++. ....+|+++.|. +||++++.|++
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 99999999999999999999999878999999999974 457899999994 47899999986
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=323.17 Aligned_cols=224 Identities=24% Similarity=0.332 Sum_probs=184.4
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC-C-C-eeEEEEEECCc
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKT-G-G-YIEGDIKISGY 726 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~-~-~-~~~G~i~~~g~ 726 (1250)
++++||+.++.... +..++++||||++++||++||+|.|||||||+.++|.|..+ + + ..+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~~---------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTDA---------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecCC---------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 57889988776431 24579999999999999999999999999999999999765 2 2 46789999999
Q ss_pred cCCc---c---c-ccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHcCCcccccccccC
Q 000860 727 PKEQ---S---T-FARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEI-SKDQRHEFVEEVMSLVELDSLRHALVGS 796 (1250)
Q Consensus 727 ~~~~---~---~-~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~-~~~~~~~~v~~~l~~l~l~~~~~~~v~~ 796 (1250)
++.. + . +.+.|+|++|++ .+.|.+||.+.+.-....+. .. ++++..+++.++++.+||.+-.... +
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~--~ 148 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRL--K 148 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHH--h
Confidence 7432 2 1 235799999996 57899999998876655432 22 4566778899999999998643222 2
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLM 875 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l 875 (1250)
..+..|||||||||.||.||+.+|++||.||||++||...+.+|++.|+++.+ .|.++|++|||.. -+.+.+|||+||
T Consensus 149 ~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VM 227 (316)
T COG0444 149 SYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVM 227 (316)
T ss_pred hCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEE
Confidence 23346999999999999999999999999999999999999999999999976 5999999999986 488999999999
Q ss_pred ecCcEEEEeCCCC
Q 000860 876 KRGGRVIYGGKLG 888 (1250)
Q Consensus 876 ~~gg~~~~~g~~~ 888 (1250)
.. |++++.|+..
T Consensus 228 Ya-G~iVE~g~~~ 239 (316)
T COG0444 228 YA-GRIVEEGPVE 239 (316)
T ss_pred EC-cEEEEeCCHH
Confidence 85 8999999973
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=318.92 Aligned_cols=180 Identities=28% Similarity=0.441 Sum_probs=152.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc------c-cceEEeeccccccCCCCCHHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ------V-QRASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~-~~~~~yv~Q~~~~~~~~TV~e~l~f~~~ 73 (1250)
+++|+|||||||||||++|.|+..|+ +|.|.++|.++.... + ++.+|||+|+..++|++||+||+..++.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence 48999999999999999999999875 999999998885432 2 4669999999999999999999998765
Q ss_pred ccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccc-cccCCCccccCccccch
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSD-TVVGSEMLRGVSGGQKK 152 (1250)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-t~vg~~~~~~LSGGqkq 152 (1250)
..+.... ..++.++.+++.+||.+..+ ..+.+ |||||||
T Consensus 110 ~~~~~~~-----------------------------------~~~~~~~~l~~~lgl~~~~~~~~p~e-----LSGGqqQ 149 (226)
T COG1136 110 IAGKSAG-----------------------------------RRKRAAEELLEVLGLEDRLLKKKPSE-----LSGGQQQ 149 (226)
T ss_pred HcCCChh-----------------------------------HHHHHHHHHHHhcCChhhhccCCchh-----cCHHHHH
Confidence 5432210 00123667889999987655 55544 9999999
Q ss_pred hhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeE
Q 000860 153 RVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYL 225 (1250)
Q Consensus 153 Rv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i 225 (1250)
||+|||||+.+|++++.||||.+||+.++..|++.+++++++.|+|+|+++|. .++...|||++.|.+|++
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd--~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD--PELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC--HHHHHhCCEEEEEeCCee
Confidence 99999999999999999999999999999999999999998888899988654 578889999999999994
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=331.14 Aligned_cols=216 Identities=23% Similarity=0.307 Sum_probs=176.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEEEECCcc
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYP 727 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~ 727 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|.+
T Consensus 2 ~~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~ 68 (246)
T PRK14269 2 IAKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKD 68 (246)
T ss_pred ceeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEe
Confidence 467889998873 23589999999999999999999999999999999997532 2458999999987
Q ss_pred CCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCCCCC
Q 000860 728 KEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS----LRHALVGSPGSF 800 (1250)
Q Consensus 728 ~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~v~~~~~~ 800 (1250)
+.. ..+++.++|++|++.+++ .||+||+.+....+... ...+..+++++++++.+++.. ..+..+ +
T Consensus 69 i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~ 141 (246)
T PRK14269 69 VKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLKQNA-----L 141 (246)
T ss_pred cccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhcCCc-----c
Confidence 643 234667999999998887 69999998875433110 012344556788999999953 233333 4
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++...+|++++|++ |+
T Consensus 142 ~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~ 218 (246)
T PRK14269 142 ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GE 218 (246)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CE
Confidence 5999999999999999999999999999999999999999999999864 899999999985 57788999999985 78
Q ss_pred EEEeCCC
Q 000860 881 VIYGGKL 887 (1250)
Q Consensus 881 ~~~~g~~ 887 (1250)
++..|+.
T Consensus 219 i~~~g~~ 225 (246)
T PRK14269 219 LIEFGES 225 (246)
T ss_pred EEEECCH
Confidence 8888875
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=337.11 Aligned_cols=217 Identities=24% Similarity=0.341 Sum_probs=182.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCe-eEEEEEECCcc
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYP 727 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~-~~G~i~~~g~~ 727 (1250)
.++++|+++.++. .++++|+|+|++|++||+++|+||||||||||+++|+|..++.. .+|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 5899999988742 12358999999999999999999999999999999999865321 13899999998
Q ss_pred CCc---ccccceEEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000860 728 KEQ---STFARISGYVEQEDV-HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 728 ~~~---~~~~~~~~yv~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lS 803 (1250)
+.. ...++.+||++|++. .++..||+||+.|..... ..+.++..++++++++.++|.+..++.+. .||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPA-----NLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCcc-----cCC
Confidence 653 234567999999974 567899999998764322 23455666778999999999988777764 599
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 882 (1250)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++ ..+|++++|.+ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999985 34 57999999985 7888
Q ss_pred EeCCC
Q 000860 883 YGGKL 887 (1250)
Q Consensus 883 ~~g~~ 887 (1250)
..|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 88875
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=323.67 Aligned_cols=193 Identities=30% Similarity=0.423 Sum_probs=161.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccccceEEeeccc---cccCCCCCHHHHHHHHHHccCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQT---DNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~---~~~~~~~TV~e~l~f~~~~~~~ 77 (1250)
+++|+||||||||||+|+|+|+++|. +|+|.+.|.+.+....+..||||||. |.-|| .||+|.+..+..-+..
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g 107 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKG 107 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCccccc
Confidence 58999999999999999999999865 99999999987665556789999995 34454 7999999886322110
Q ss_pred CcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHH
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA 157 (1250)
-.. ... ...++.++++|+.+|+.+.+|..+|+ |||||+|||-||
T Consensus 108 ~~~------~~~-------------------------~~d~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lA 151 (254)
T COG1121 108 WFR------RLN-------------------------KKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLA 151 (254)
T ss_pred ccc------ccc-------------------------HHHHHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHH
Confidence 000 000 01123488999999999999999987 999999999999
Q ss_pred HHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 158 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
|||+++|++|+|||||+|+|+.++..+.+.|+++.++ |+||+++ +|+...+.++||+|+.|+ +++.+.|+++++.+
T Consensus 152 RAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~v-tHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 152 RALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMV-THDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred HHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 9999999999999999999999999999999999887 8998886 678899999999999995 66789999988643
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=332.74 Aligned_cols=221 Identities=23% Similarity=0.280 Sum_probs=179.3
Q ss_pred CeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CeeEEEEEE
Q 000860 647 PLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG---GYIEGDIKI 723 (1250)
Q Consensus 647 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~ 723 (1250)
...++++|+++.++ ++++|+|+|+++++||+++|+|||||||||||++|+|..++ .+.+|+|.+
T Consensus 18 ~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 84 (267)
T PRK14237 18 EIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY 84 (267)
T ss_pred CeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEE
Confidence 34689999998873 24689999999999999999999999999999999997642 146899999
Q ss_pred CCccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000860 724 SGYPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPG 798 (1250)
Q Consensus 724 ~g~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~ 798 (1250)
+|.++.. ...++.++|++|++.+++ .||+||+.+..... ....+++.++++.++++.++|.+..+.... ..
T Consensus 85 ~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~ 160 (267)
T PRK14237 85 RGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLH-KS 160 (267)
T ss_pred CCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhc-CC
Confidence 9987642 134667999999988887 69999998865322 112334455678889999998532211111 12
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
...||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++. ++.|||+++|+++ ++.+.+|++++|++
T Consensus 161 ~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~- 237 (267)
T PRK14237 161 ALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYL- 237 (267)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEEC-
Confidence 24699999999999999999999999999999999999999999999985 4799999999985 57789999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 238 G~i~~~g~~ 246 (267)
T PRK14237 238 GDLIEYDKT 246 (267)
T ss_pred CEEEEeCCH
Confidence 789888885
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=340.54 Aligned_cols=224 Identities=21% Similarity=0.304 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-eeEEEEEECCcc
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYP 727 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~~~G~i~~~g~~ 727 (1250)
.++++|+++.+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 58999999887532 12346999999999999999999999999999999999976532 237999999998
Q ss_pred CCc---cc---cc-ceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000860 728 KEQ---ST---FA-RISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPG 798 (1250)
Q Consensus 728 ~~~---~~---~~-~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~ 798 (1250)
+.. .. ++ +.++||+|++ .+.|.+|+.+++........ ..+.++..+++.++++.++|.+..+. . +..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KMY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cCC
Confidence 643 11 22 4799999998 67899999999877654331 23455666788999999999753322 1 122
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeec
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
+..||||||||++|||||+.+|++|++||||+|||..++..+++.|+++.++ |.|+|++|||+. .+...+|++++|.+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 3569999999999999999999999999999999999999999999999765 899999999975 46678999999985
Q ss_pred CcEEEEeCCC
Q 000860 878 GGRVIYGGKL 887 (1250)
Q Consensus 878 gg~~~~~g~~ 887 (1250)
|++++.|+.
T Consensus 238 -G~ive~g~~ 246 (330)
T PRK09473 238 -GRTMEYGNA 246 (330)
T ss_pred -CEEEEECCH
Confidence 799999986
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=338.96 Aligned_cols=219 Identities=23% Similarity=0.325 Sum_probs=178.7
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEc
Confidence 589999999874210 001358999999999999999999999999999999999876 3579999999875
Q ss_pred Cc--------ccccceEEEEcCCCCC-CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000860 729 EQ--------STFARISGYVEQEDVH-SPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHALVGSPG 798 (1250)
Q Consensus 729 ~~--------~~~~~~~~yv~q~~~~-~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~ 798 (1250)
.. ..+++.++|++|++.. +...||+||+.+..... ....++..++++++++.++|. +..++.++
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~--- 149 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPF--- 149 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChh---
Confidence 31 2345679999999732 22469999998865322 223444556788899999994 56666664
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeec
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 150 --~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 150 --ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred --hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 49999999999999999999999999999999999999999999998764 899999999985 57789999999985
Q ss_pred CcEEEEeCCC
Q 000860 878 GGRVIYGGKL 887 (1250)
Q Consensus 878 gg~~~~~g~~ 887 (1250)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 788888875
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=366.74 Aligned_cols=221 Identities=24% Similarity=0.331 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|..++++.+|+|.++|.++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 589999998873 2369999999999999999999999999999999999876433589999999876
Q ss_pred Ccc----cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQS----TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~~----~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
... ..++.+|||+|++.+++.+||+||+.+....+.....+.++..++++++++.+++.+..++.+++ |||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGN-----LGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhh-----CCH
Confidence 432 12466999999998899999999998865432111123344556789999999998888887754 999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEe
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 884 (1250)
|||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++...+|++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999877999999999975 56778999999985 788888
Q ss_pred CCCCc
Q 000860 885 GKLGV 889 (1250)
Q Consensus 885 g~~~~ 889 (1250)
|+...
T Consensus 225 ~~~~~ 229 (506)
T PRK13549 225 RPAAG 229 (506)
T ss_pred ccccc
Confidence 88754
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=334.54 Aligned_cols=219 Identities=24% Similarity=0.359 Sum_probs=178.7
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC------eeEEEEEE
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG------YIEGDIKI 723 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~------~~~G~i~~ 723 (1250)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 67889998763 246899999999999999999999999999999999976532 12799999
Q ss_pred CCccCCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000860 724 SGYPKEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLP-KEISKDQRHEFVEEVMSLVELDSLRHALVGSPGS 799 (1250)
Q Consensus 724 ~g~~~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~ 799 (1250)
+|.+... ..+++.++|++|++..++.+||+||+.+....... ......+.+++++++++.+++.+..++.++
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---- 144 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVT---- 144 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcc----
Confidence 9987642 23456689999998766679999999875321110 011112345668899999999887776664
Q ss_pred CcCCHHHHHHHHHHHHHh---------hCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhh
Q 000860 800 FGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAF 869 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~---------~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~ 869 (1250)
.||||||||++|||+|+ .+|++|+|||||+|||+.+...+.+.|++++++ |+|||+++|++. ++...+
T Consensus 145 -~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 145 -TLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred -cCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 49999999999999999 599999999999999999999999999998765 899999999985 577789
Q ss_pred cceeeeecCcEEEEeCCCC
Q 000860 870 DELLLMKRGGRVIYGGKLG 888 (1250)
Q Consensus 870 d~v~~l~~gg~~~~~g~~~ 888 (1250)
|++++|.+ |++++.|+.+
T Consensus 223 d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred CEEEEEEC-CeEEEecCHH
Confidence 99999985 7888888763
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=328.87 Aligned_cols=198 Identities=26% Similarity=0.386 Sum_probs=168.2
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHHHHHH
Q 000860 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLW 757 (1250)
Q Consensus 678 L~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~ 757 (1250)
|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.... ...+|++|++.+++.+||+||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999876 35899999998764322 22489999999999999999998
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000860 758 FSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 837 (1250)
Q Consensus 758 ~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~ 837 (1250)
+......+ ..++++.+++++++++.+++.+..++.++ .||||||||++|||+|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 86421111 23344555678899999999887777765 4999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 838 AIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 838 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999985 57788999999985 788887764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=377.33 Aligned_cols=135 Identities=23% Similarity=0.294 Sum_probs=108.9
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHh---hCCc
Q 000860 746 HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL-RHALVGSPGSFGLSTEQRKRLTIAVELV---ANPS 821 (1250)
Q Consensus 746 ~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~v~~~~~~~lSgGerqr~~ia~~l~---~~p~ 821 (1250)
.+...||.|+|.+...-........++.++++ ++++.+||.+. .+..+. .||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~-----tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLS-----SLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccc-----cCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999877542211112234455566 47889999875 566664 49999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee-----cCcEEEEeCCCC
Q 000860 822 IIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK-----RGGRVIYGGKLG 888 (1250)
Q Consensus 822 il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~~ 888 (1250)
+++|||||+|||+.+...+++.|+++++.|.|||+++|++. .+ ..+|++++|. ++|+++..|+++
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999999888999999999975 34 8999999995 358999999874
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=330.57 Aligned_cols=216 Identities=22% Similarity=0.309 Sum_probs=178.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKT--GG-YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478999998873 2358999999999999999999999999999999999754 21 2479999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS----LRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++.+|++||+.+..... ...+..+.+++++++++.+++.. ..++.+
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 146 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLKSNA-- 146 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCc--
Confidence 87632 234677999999999999999999998764432 11223344566888999999864 223333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|.
T Consensus 147 ---~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14256 147 ---MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY 221 (252)
T ss_pred ---CcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE
Confidence 35999999999999999999999999999999999999999999999975 689999999985 5678899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |+++..|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14256 222 M-GDLVECGET 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 788888875
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=330.46 Aligned_cols=209 Identities=26% Similarity=0.368 Sum_probs=175.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 578999998773 2358999999999999999999999999999999999865 3579999999875
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCH
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~~~lSg 804 (1250)
.. ...++.++|++|++.+++ .||+||+.+....+ . ...++++++++.+++. +..++.+. .|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDVK-----NLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCcc-----cCCH
Confidence 42 234567999999988876 69999987653321 1 1134578899999996 45565554 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
|||||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999985 56778999999985 78888
Q ss_pred eCCC
Q 000860 884 GGKL 887 (1250)
Q Consensus 884 ~g~~ 887 (1250)
.|+.
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 7775
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=341.16 Aligned_cols=223 Identities=16% Similarity=0.243 Sum_probs=179.7
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--CeeEEEEEECCc
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG--GYIEGDIKISGY 726 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~--~~~~G~i~~~g~ 726 (1250)
.++++|+++.|... .+...+|+|||++|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|.
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 47899999988532 1234699999999999999999999999999999999997642 245799999998
Q ss_pred cCCc---cc----ccceEEEEcCCCC--CCCCCCHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHHHHcCCccc---cc
Q 000860 727 PKEQ---ST----FARISGYVEQEDV--HSPQVTIEESLWFSANLRLPKE---ISKDQRHEFVEEVMSLVELDSL---RH 791 (1250)
Q Consensus 727 ~~~~---~~----~~~~~~yv~q~~~--~~~~ltv~e~l~~~~~l~~~~~---~~~~~~~~~v~~~l~~l~l~~~---~~ 791 (1250)
++.. .. .++.++||+|++. +.|.+||.+++.+......... ....+.++++.++++.+||.+. .+
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~ 153 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMR 153 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 7642 11 1346999999975 6788999999976432110000 1123445678899999999753 34
Q ss_pred ccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhc
Q 000860 792 ALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFD 870 (1250)
Q Consensus 792 ~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d 870 (1250)
+.+ ..|||||||||+||+||+.+|+||++||||+|||+.++..+++.|+++.++ |.|||++||+.+ .+...+|
T Consensus 154 ~~p-----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~d 227 (330)
T PRK15093 154 SFP-----YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWAD 227 (330)
T ss_pred CCc-----hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCC
Confidence 444 359999999999999999999999999999999999999999999999764 899999999975 5678899
Q ss_pred ceeeeecCcEEEEeCCC
Q 000860 871 ELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 871 ~v~~l~~gg~~~~~g~~ 887 (1250)
++++|.+ |++++.|+.
T Consensus 228 ri~vm~~-G~ive~g~~ 243 (330)
T PRK15093 228 KINVLYC-GQTVETAPS 243 (330)
T ss_pred EEEEEEC-CEEEEECCH
Confidence 9999985 899999885
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=333.58 Aligned_cols=214 Identities=23% Similarity=0.297 Sum_probs=175.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CeeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 13 ~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g 79 (269)
T PRK14259 13 IISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG 79 (269)
T ss_pred eEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 689999998873 23589999999999999999999999999999999997542 13589999999
Q ss_pred ccCC-----cccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000860 726 YPKE-----QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD----SLRHALVGS 796 (1250)
Q Consensus 726 ~~~~-----~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~v~~ 796 (1250)
.++. ...+++.++|++|++.+++ .||+||+.+....+ ... .+.++.++++++.+++. +..++.+
T Consensus 80 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 152 (269)
T PRK14259 80 TDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARIN---GYT-GDMDELVERSLRKAAVWDECKDKLNESG-- 152 (269)
T ss_pred EEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhc---CCc-HHHHHHHHHHHHHhCCcchhhhhhCCCc--
Confidence 8753 1234567999999998887 49999998876433 112 22345567788888774 2334443
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++...+|++++|+
T Consensus 153 ---~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 227 (269)
T PRK14259 153 ---YSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFN 227 (269)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEe
Confidence 35999999999999999999999999999999999999999999999854 799999999985 5788999999998
Q ss_pred c----------CcEEEEeCCC
Q 000860 877 R----------GGRVIYGGKL 887 (1250)
Q Consensus 877 ~----------gg~~~~~g~~ 887 (1250)
+ +|++++.|++
T Consensus 228 ~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 228 AEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred ccccccccccccceEEEeCCH
Confidence 5 2578888875
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=326.55 Aligned_cols=211 Identities=27% Similarity=0.374 Sum_probs=179.2
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.+. + ++|+|+|++++|||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~ 65 (235)
T cd03299 2 KVENLSKDWK-------------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITN 65 (235)
T ss_pred eeEeEEEEeC-------------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCc
Confidence 5677777652 1 27999999999999999999999999999999999866 457999999987643
Q ss_pred -ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000860 731 -STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKR 809 (1250)
Q Consensus 731 -~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr 809 (1250)
...++.++|++|++.+++.+|+.||+.+..... ..+..+..+.+.++++.++|.+..++.+. .||||||||
T Consensus 66 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 137 (235)
T cd03299 66 LPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPE-----TLSGGEQQR 137 (235)
T ss_pred CChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcc-----cCCHHHHHH
Confidence 123567999999999999999999998765332 22344455667889999999888887775 499999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 810 ~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 138 l~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 138 VAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998764 899999999984 56778999999985 788888875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=315.61 Aligned_cols=190 Identities=53% Similarity=0.891 Sum_probs=162.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCC--CCCeeEEEEEECCc
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRK--TGGYIEGDIKISGY 726 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~--~~~~~~G~i~~~g~ 726 (1250)
.++++|+++.++.... ...+++|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~~-------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSPS-------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCCC-------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 5789999998853100 01246999999999999999999999999999999999986 5 46899999999
Q ss_pred cCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000860 727 PKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQ 806 (1250)
Q Consensus 727 ~~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGe 806 (1250)
+......++.++|++|++.+++.+|++||+.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8755455678999999999899999999997643210 399999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 807 rqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
|||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999998777999999999986557788999999986 7877654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=344.92 Aligned_cols=190 Identities=24% Similarity=0.387 Sum_probs=167.4
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc-------ccccceEEEEcCCCCCCCCCCH
Q 000860 680 NVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-------STFARISGYVEQEDVHSPQVTI 752 (1250)
Q Consensus 680 ~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~yv~q~~~~~~~ltv 752 (1250)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.++|.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999876 358999999987532 1245789999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000860 753 EESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 832 (1250)
Q Consensus 753 ~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgL 832 (1250)
+||+.|... ...+++++++++.+||.+..++.++ .||||||||++|||||+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYPG-----SLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987632 1123568899999999988888775 49999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 833 DARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 833 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
|+.++..+.+.|++++++ |+|+|++||++. ++...+|++++|++ |+++..|+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 999999999999998765 899999999985 68889999999985 789888886
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=326.54 Aligned_cols=211 Identities=23% Similarity=0.355 Sum_probs=177.2
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++. + ..|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 678999988742 1 138999999999999999999999999999999876 45799999998764
Q ss_pred cc-cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000860 730 QS-TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808 (1250)
Q Consensus 730 ~~-~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerq 808 (1250)
.. ..++.++|++|++.+++.+|+.||+.+...... .. .+..+++++++++.+|+.+..++.+.. |||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLPGQ-----LSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCccc-----CCHHHHH
Confidence 32 234579999999999999999999987532111 11 223456689999999999888887754 9999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 809 r~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
|++|||+++.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999985 56778999999985 788888875
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=328.99 Aligned_cols=215 Identities=24% Similarity=0.276 Sum_probs=177.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 578999998773 235899999999999999999999999999999999975421 2579999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS----LRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~v~~ 796 (1250)
.++.. ...++.++|++|++.+++ .|++||+.+...... ....++.+++++++++.+++.+ ..+..+
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 145 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKSA-- 145 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCCc--
Confidence 87642 134567999999998887 899999988754321 1123344566788999998742 334433
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|+|++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 146 ---~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 146 ---LKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 35999999999999999999999999999999999999999999999876 689999999985 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |++++.|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14270 221 M-GDLIEFNKT 230 (251)
T ss_pred C-CeEEEeCCH
Confidence 5 788888875
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=332.42 Aligned_cols=224 Identities=21% Similarity=0.297 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++++..+.. +.+.+.+++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 77 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPL 77 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 4899999998852110 000113469999999999999999999999999999999999876 3589999999876
Q ss_pred Cc---ccccceEEEEcCCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcC
Q 000860 729 EQ---STFARISGYVEQEDV--HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHALVGSPGSFGL 802 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~--~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~~~l 802 (1250)
.. ...++.++|++|++. +++.+||.+++.+...... .....+..+.++++++.+++. +..+..+. .|
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~L 150 (267)
T PRK15112 78 HFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYPH-----ML 150 (267)
T ss_pred CCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCch-----hc
Confidence 42 123456999999975 5678899999987654431 123344556788999999994 55666554 49
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEE
Q 000860 803 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRV 881 (1250)
Q Consensus 803 SgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 881 (1250)
|||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |++
T Consensus 151 S~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i 228 (267)
T PRK15112 151 APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEV 228 (267)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998764 899999999985 57778999999985 788
Q ss_pred EEeCCC
Q 000860 882 IYGGKL 887 (1250)
Q Consensus 882 ~~~g~~ 887 (1250)
+..|+.
T Consensus 229 ~~~~~~ 234 (267)
T PRK15112 229 VERGST 234 (267)
T ss_pred EecCCH
Confidence 888775
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=343.14 Aligned_cols=212 Identities=24% Similarity=0.416 Sum_probs=179.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++++|+.. +.++|+|+|+++++||.+||+|+||||||||++.|+|..+ +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 68999999999753 4579999999999999999999999999999999999766 4589999999886
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR-------HALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~-------~~~v~~~~ 798 (1250)
.. ..+++.+++++|...+| ..|+|+||..+. | +.++++ +.++++++||++.. |+.+|+.
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA~----~-~AsDEe----l~~aL~qvgL~~l~~~~p~gl~t~lge~- 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLF-SGTLRDNLRLAN----P-DASDEE----LWAALQQVGLEKLLESAPDGLNTWLGEG- 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHH-HHHHHHHHhhcC----C-CCCHHH----HHHHHHHcCHHHHHHhChhhhhchhccC-
Confidence 43 34677899999998777 469999998753 1 344443 56788888887654 4456654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
++.||||||||++|||+|++|.++++|||||.|||+.|++++++.|.+.++ |+|+|++||+.. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 467999999999999999999999999999999999999999999988764 999999999975 4688999999985
Q ss_pred cEEEEeCCCC
Q 000860 879 GRVIYGGKLG 888 (1250)
Q Consensus 879 g~~~~~g~~~ 888 (1250)
|+++..|..+
T Consensus 548 Gkiie~G~~~ 557 (573)
T COG4987 548 GKIIEEGTHA 557 (573)
T ss_pred CeeeecCCHH
Confidence 7999998863
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=344.56 Aligned_cols=194 Identities=26% Similarity=0.413 Sum_probs=169.7
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc-------ccccceEEEEcCCCCCCCCCCH
Q 000860 680 NVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-------STFARISGYVEQEDVHSPQVTI 752 (1250)
Q Consensus 680 ~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~yv~q~~~~~~~ltv 752 (1250)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999876 357999999987532 1345679999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000860 753 EESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 832 (1250)
Q Consensus 753 ~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgL 832 (1250)
+||+.|+.... ...+.+++++++++.++|.+..++.+.. ||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999875421 1233456789999999999888887754 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 833 DARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 833 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
|+.++..+.+.|++++++ |+|||+++|++. ++...+|++++|++ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999998765 899999999985 57788999999985 788888875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=332.68 Aligned_cols=216 Identities=25% Similarity=0.353 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++.. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 58899999987421 12358999999999999999999999999999999999876 4579999999876
Q ss_pred Cc---ccccceEEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQ---STFARISGYVEQEDV-HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~-~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
.. ...++.+||++|++. .++..||.||+.+..... ..+.++..++++++++.++|.+..++.+. .|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPA-----RLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCH
Confidence 43 234677999999974 577789999998765422 23344555678999999999888777664 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++ ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999765 999999999985 34 46999999986 78888
Q ss_pred eCCC
Q 000860 884 GGKL 887 (1250)
Q Consensus 884 ~g~~ 887 (1250)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 8875
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=321.85 Aligned_cols=191 Identities=27% Similarity=0.391 Sum_probs=163.7
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc-------ccccceEEEEcCCCCCCCCCCH
Q 000860 680 NVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-------STFARISGYVEQEDVHSPQVTI 752 (1250)
Q Consensus 680 ~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~yv~q~~~~~~~ltv 752 (1250)
|+|+++++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 9999999999999999999999875 358999999987531 1245679999999999989999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000860 753 EESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 832 (1250)
Q Consensus 753 ~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgL 832 (1250)
+||+.+..... .....+++++++++.+++.+..++.++ .||||||||++||++|+.+|++++|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPA-----QLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998765321 223345668899999999877777665 49999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 833 DARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 833 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
|+.++..+.+.|++++++ |+|||+++|++. ++...+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999765 899999999975 46678999999985 7877654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=329.71 Aligned_cols=215 Identities=23% Similarity=0.319 Sum_probs=176.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKT--GG-YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 725 (1250)
.++++|+++.++ ++++|+|+|++|++||+++|+||||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 589999998773 2358999999999999999999999999999999999754 21 2479999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL----RHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~v~~ 796 (1250)
.++.. ...++.+||++|++.+++. ||+||+.+....+. ...+++.+++++++++.+++.+. .++.+
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~-- 153 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQA-- 153 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCCc--
Confidence 87632 2345679999999888875 99999988654321 11234445667888999988542 33333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 154 ---~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 228 (259)
T PRK14274 154 ---LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY 228 (259)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 35999999999999999999999999999999999999999999999865 799999999985 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |+++..|+.
T Consensus 229 ~-G~i~~~g~~ 238 (259)
T PRK14274 229 M-GELVECNDT 238 (259)
T ss_pred C-CEEEEECCH
Confidence 5 799988875
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=328.82 Aligned_cols=215 Identities=27% Similarity=0.326 Sum_probs=175.6
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKT--GG-YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 725 (1250)
.++++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 478999998873 2358999999999999999999999999999999999632 21 2479999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS----LRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++ .||+||+.+....+ . ....+..++.++++++.+++.. ..+..+
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 146 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSA-- 146 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCc--
Confidence 87632 234567999999988887 89999998875432 1 1123334566788899988743 234443
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++...+|++++|+
T Consensus 147 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 147 ---LGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 35999999999999999999999999999999999999999999999865 689999999975 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |++++.|+.
T Consensus 222 ~-G~i~~~g~~ 231 (252)
T PRK14239 222 D-GDLIEYNDT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 788888875
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=318.46 Aligned_cols=200 Identities=24% Similarity=0.315 Sum_probs=182.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc---c---c-ccceEEEEcCCCCCCCC
Q 000860 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---S---T-FARISGYVEQEDVHSPQ 749 (1250)
Q Consensus 677 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~---~-~~~~~~yv~q~~~~~~~ 749 (1250)
-++|+|++|+.||+..|||-||||||||+++|.+... +..|+|.++|.++.. . . .++.+++|+|...++|+
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPh 120 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPH 120 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccc
Confidence 4899999999999999999999999999999999877 468999999998643 1 2 34579999999999999
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000860 750 VTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPT 829 (1250)
Q Consensus 750 ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPT 829 (1250)
.||.||..|+..++ +.+++++++++.++++..||+...+..+.. ||||+||||.|||||+.+|+||++|||+
T Consensus 121 rtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp~e-----LSGGMqQRVGLARAla~~~~IlLMDEaF 192 (386)
T COG4175 121 RTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYPNE-----LSGGMQQRVGLARALANDPDILLMDEAF 192 (386)
T ss_pred hhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCccc-----ccchHHHHHHHHHHHccCCCEEEecCch
Confidence 99999999998776 678899999999999999999999998864 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCCC
Q 000860 830 SGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLG 888 (1250)
Q Consensus 830 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 888 (1250)
|+|||--+.++++-|.++.++ ++|||++|||.. |.++.-|||.+|. +|+++..|+++
T Consensus 193 SALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~ 250 (386)
T COG4175 193 SALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPE 250 (386)
T ss_pred hhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHH
Confidence 999999999999999888554 899999999986 7899999999997 58999999984
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=336.60 Aligned_cols=220 Identities=21% Similarity=0.277 Sum_probs=178.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CeeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 725 (1250)
.++++|+++.+.. +.+++|+|+|++|++||++||+||||||||||+++|+|.... .+.+|+|.+||
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 6899999998842 124689999999999999999999999999999999997532 23579999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHHHcCCcccccccccCCCC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKD-QRHEFVEEVMSLVELDSLRHALVGSPGS 799 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~-~~~~~v~~~l~~l~l~~~~~~~v~~~~~ 799 (1250)
.++.. ..+++.++||||++.+++ .|++||+.|..... ..+++ ..++.++++++.++|.+..++.++. ..
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~ 223 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AG 223 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-Cc
Confidence 98752 235678999999998875 79999999864322 22222 2344567888888875433333433 23
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|+|++|++ |
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G 300 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-G 300 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 46999999999999999999999999999999999999999999999875 799999999974 46677999999985 7
Q ss_pred EEEEeCCC
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
+++..|++
T Consensus 301 ~i~e~g~~ 308 (329)
T PRK14257 301 WIEEAGET 308 (329)
T ss_pred EEEEeCCH
Confidence 99999886
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=327.39 Aligned_cols=215 Identities=23% Similarity=0.326 Sum_probs=175.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 725 (1250)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 478999998873 235899999999999999999999999999999999964321 2479999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS----LRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~v~~ 796 (1250)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ..+.++.++.++++++.+++.+ ..++.+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 144 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSA-- 144 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCC--
Confidence 87642 234667999999988887 899999998754321 1123344567888888888742 334444
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++...+|++++|+
T Consensus 145 ---~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 145 ---LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred ---CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 35999999999999999999999999999999999999999999999854 899999999974 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |+++..|+.
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 6 788888774
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=320.26 Aligned_cols=202 Identities=23% Similarity=0.340 Sum_probs=173.8
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+++++|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEc
Confidence 589999998763 2358999999999999999999999999999999999876 3579999999876
Q ss_pred CcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000860 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerq 808 (1250)
.....++.++|++|++.+++.+|++||+.+....+ .. ..++.++++++.++|.+..++.++ .|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH---GR---RAKQMPGSALAIVGLAGYEDTLVR-----QLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhc---CC---cHHHHHHHHHHHcCChhhccCChh-----hCCHHHHH
Confidence 54334556899999998888899999998865432 11 123456788999999887777765 49999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeec
Q 000860 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 809 r~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
|++|||+++.+|++++|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+.+|++++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 999999999999999999999999999999999999998888999999999985 68889999999863
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=327.90 Aligned_cols=219 Identities=22% Similarity=0.332 Sum_probs=174.8
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eeEEEEEECCc
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKT--GG-YIEGDIKISGY 726 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g~ 726 (1250)
-+++|+++.++ ++++|+|+||++++||+++|+||||||||||+++|+|... +. +.+|+|.++|.
T Consensus 6 ~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 72 (251)
T PRK14244 6 ASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI 72 (251)
T ss_pred EEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE
Confidence 46788888763 2468999999999999999999999999999999999754 11 35899999998
Q ss_pred cCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000860 727 PKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFG 801 (1250)
Q Consensus 727 ~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~ 801 (1250)
++.. ..+++.++|++|++.+++. ||+||+.+....+. .....++.++.++++++.+++.+...+.... ....
T Consensus 73 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~ 149 (251)
T PRK14244 73 DVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFE 149 (251)
T ss_pred ehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-Chhh
Confidence 7532 1346679999999888875 99999988643321 1112234455678899999996522111111 1245
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEE
Q 000860 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRV 881 (1250)
Q Consensus 802 lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 881 (1250)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |++
T Consensus 150 LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i 226 (251)
T PRK14244 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRI 226 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999985 4899999999985 56778999999986 788
Q ss_pred EEeCCC
Q 000860 882 IYGGKL 887 (1250)
Q Consensus 882 ~~~g~~ 887 (1250)
++.|+.
T Consensus 227 ~~~~~~ 232 (251)
T PRK14244 227 VEYNTT 232 (251)
T ss_pred EEeCCH
Confidence 888875
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=328.37 Aligned_cols=216 Identities=23% Similarity=0.310 Sum_probs=177.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC-e--eEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG-Y--IEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~-~--~~G~i~~~g 725 (1250)
.++++|+++.++ ++++|+|+|+++++||+++|+|+||||||||+++|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 588999998873 235899999999999999999999999999999999976532 2 479999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD----SLRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++ .||+||+.+....+. ..++.+..+.++++++.+++. +..++.+
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 148 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKSA-- 148 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCc--
Confidence 87632 234567999999998887 899999988654321 123334456678889988884 2334433
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 149 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 149 ---LGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 35999999999999999999999999999999999999999999999865 699999999985 6788999999997
Q ss_pred c----CcEEEEeCCC
Q 000860 877 R----GGRVIYGGKL 887 (1250)
Q Consensus 877 ~----gg~~~~~g~~ 887 (1250)
+ .|++++.|+.
T Consensus 224 ~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 224 TDESRIGQMVEFGVT 238 (259)
T ss_pred ccCCCCceEEEeCCH
Confidence 3 4899999886
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=327.11 Aligned_cols=216 Identities=24% Similarity=0.299 Sum_probs=176.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCe---eEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY---IEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~---~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 578899998773 2358999999999999999999999999999999999765322 379999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD----SLRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++.+|+.||+.+..... .....++..+.++++++.+++. +..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 146 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVKDRLKTPA-- 146 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCc--
Confidence 87642 234567999999999999999999998765422 1112333455667777777653 3334444
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++...+|++++|+
T Consensus 147 ---~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 147 ---TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 35999999999999999999999999999999999999999999999864 799999999985 5777899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |++++.|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 788888875
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=326.59 Aligned_cols=215 Identities=27% Similarity=0.345 Sum_probs=176.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g 69 (250)
T PRK14262 3 IIEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69 (250)
T ss_pred eEEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478999998773 235899999999999999999999999999999999975421 2579999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL----RHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~v~~ 796 (1250)
.++.. ...++.++|++|++.+++ .||+||+.+...... ....+..++.++++++.+++.+. .+..+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 144 (250)
T PRK14262 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKPG-- 144 (250)
T ss_pred EEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCCh--
Confidence 87542 234567999999998887 899999988654321 11233445567888899888542 33333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++...+|++++|+
T Consensus 145 ---~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~ 219 (250)
T PRK14262 145 ---TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMY 219 (250)
T ss_pred ---hhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 45999999999999999999999999999999999999999999999865 799999999975 4778899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |+++..|+.
T Consensus 220 ~-G~i~~~g~~ 229 (250)
T PRK14262 220 R-GELIEYGPT 229 (250)
T ss_pred C-CEEEEecCH
Confidence 6 788888875
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=328.94 Aligned_cols=215 Identities=26% Similarity=0.342 Sum_probs=177.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CeeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 725 (1250)
.++++|+++.+. ++++|+|+|+++++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 25 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 589999999873 23589999999999999999999999999999999997642 13589999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS----LRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++. ||+||+.+..... .....+..++.++++++.+++.+ ..+..+
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 166 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRLHENA-- 166 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCc--
Confidence 87642 2346789999999988876 9999998765432 11122334466888899988863 233333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 167 ---~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 241 (272)
T PRK14236 167 ---FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMY 241 (272)
T ss_pred ---ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 35999999999999999999999999999999999999999999999975 799999999985 5678899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |+++..|+.
T Consensus 242 ~-G~i~~~g~~ 251 (272)
T PRK14236 242 M-GKLVEYGDT 251 (272)
T ss_pred C-CEEEecCCH
Confidence 5 788888875
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=320.50 Aligned_cols=173 Identities=25% Similarity=0.327 Sum_probs=133.8
Q ss_pred eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHHHHHH
Q 000860 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLW 757 (1250)
Q Consensus 678 L~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~ 757 (1250)
|.==.+++..||+++++||||-||||+.++|+|..++ .+|+ .. .-.++|=||--.--...||++-|.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 3334567888999999999999999999999997763 3454 11 123677787644345789999765
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHH
Q 000860 758 FSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 837 (1250)
Q Consensus 758 ~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~ 837 (1250)
-...-+... .-...++.+-|+|+...+..+.+ |||||.|||+||.+|.+++++.+||||++.||++.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v~~-----LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPVDE-----LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccccc-----CCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 433221111 11235788889999999988864 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeee
Q 000860 838 AIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 838 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..+.+.||+.... ++|.+++-||... +--..||+++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999998754 7899999999643 334567777774
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=326.65 Aligned_cols=215 Identities=25% Similarity=0.299 Sum_probs=176.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 478899998773 245899999999999999999999999999999999976531 3579999999
Q ss_pred ccCCc----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000860 726 YPKEQ----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS----LRHALVGSP 797 (1250)
Q Consensus 726 ~~~~~----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~v~~~ 797 (1250)
.++.. ...++.++|++|++.+++ .||.||+.+..... ....++..++++.++++.+++.+ ..++.+
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--- 143 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRLKSHA--- 143 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHhhcCc---
Confidence 87531 234667999999998887 89999998764332 11123344566778888888753 233333
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeec
Q 000860 798 GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 798 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++...+|++++|++
T Consensus 144 --~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~ 219 (249)
T PRK14253 144 --FGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM 219 (249)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 35999999999999999999999999999999999999999999999875 689999999985 57788999999985
Q ss_pred CcEEEEeCCC
Q 000860 878 GGRVIYGGKL 887 (1250)
Q Consensus 878 gg~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 220 -G~i~~~g~~ 228 (249)
T PRK14253 220 -GELVEHDDT 228 (249)
T ss_pred -CEEEEeCCH
Confidence 789888875
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=360.95 Aligned_cols=219 Identities=27% Similarity=0.372 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++++++ ++++|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEC
Confidence 488999998873 2468999999999999999999999999999999999876 3579999999876
Q ss_pred Ccc----cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000860 729 EQS----TFARISGYVEQEDVHSPQVTIEESLWFSANLRLP-KEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 729 ~~~----~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lS 803 (1250)
... ..++.++|++|++.+++.+||+|++.++...... ...+.++.+++++++++.+||.+..+..+++ ||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS 143 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGE-----LS 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhh-----CC
Confidence 421 1245799999999899999999999886432211 1122344456788999999999888887765 99
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|++. ++...+|++++|.+ |+++.
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIA 221 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999985 57789999999985 78888
Q ss_pred eCCCCc
Q 000860 884 GGKLGV 889 (1250)
Q Consensus 884 ~g~~~~ 889 (1250)
.|+...
T Consensus 222 ~~~~~~ 227 (501)
T PRK10762 222 EREVAD 227 (501)
T ss_pred ecCcCc
Confidence 888754
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=319.31 Aligned_cols=211 Identities=25% Similarity=0.414 Sum_probs=177.4
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.+... .+.+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5788999876421 112569999999999999999999999999999999999865 45899999998764
Q ss_pred cc------cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000860 730 QS------TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 730 ~~------~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lS 803 (1250)
.. ..++.++|++|++.+++.+|+.||+.+...... ..+.++..++++++++.+||.+..++.+. .||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYPH-----NLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCC
Confidence 21 245679999999999988999999998754321 13345556678999999999887777764 499
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeecCcEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRV 881 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 881 (1250)
||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ..+.+|++++|.+ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999876 4899999999974 5689999999985 553
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=373.06 Aligned_cols=209 Identities=25% Similarity=0.414 Sum_probs=175.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.+.. ++++|+|+|++++|||++||+||||||||||+++|+|.. + .+|+|.+||.++
T Consensus 349 ~i~~~~vsf~~~~------------~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSPD------------GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEeccC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEec
Confidence 5899999975431 246899999999999999999999999999999999987 4 479999999886
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-------SLRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~v~~~~ 798 (1250)
.+ ..+++.++||+|++.+|. .|++||+.++. | +.++++ ++++++..++. +-.||.+|+.+
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~----~-~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN----P-DASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred ccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhcccccccccccCC
Confidence 53 467889999999999885 59999998752 1 234443 44555555543 34578888754
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
..||||||||++|||||+++|+||+||||||+||+++++.+++.|+++. +++|+|+++|+++ ..+.+|+|++|++
T Consensus 484 -~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~- 558 (588)
T PRK11174 484 -AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD- 558 (588)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC-
Confidence 4699999999999999999999999999999999999999999999885 5899999999984 5788999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 559 G~i~e~G~~ 567 (588)
T PRK11174 559 GQIVQQGDY 567 (588)
T ss_pred CeEeecCCH
Confidence 799998874
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=327.40 Aligned_cols=219 Identities=24% Similarity=0.324 Sum_probs=178.6
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 725 (1250)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 689999999874 246899999999999999999999999999999999976531 3589999999
Q ss_pred ccCCc----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000860 726 YPKEQ----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFG 801 (1250)
Q Consensus 726 ~~~~~----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~ 801 (1250)
.++.. ..+++.++|++|++.+++ .||+||+.+..... ...+.++.++++.++++.+++.+..++... .....
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 234677999999998887 89999998764322 112344455567888999998753221111 12245
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEE
Q 000860 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRV 881 (1250)
Q Consensus 802 lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 881 (1250)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 589999999975 57788999999985 799
Q ss_pred EEeCCC
Q 000860 882 IYGGKL 887 (1250)
Q Consensus 882 ~~~g~~ 887 (1250)
+..|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 888875
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=330.23 Aligned_cols=203 Identities=20% Similarity=0.236 Sum_probs=153.4
Q ss_pred eeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCcc
Q 000860 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 727 (1250)
Q Consensus 648 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 727 (1250)
..+++.++++.|+.. +-+++.+++..++.-+..+++|+||+||||++|++.|...+ ..|-+.++
T Consensus 361 p~l~i~~V~f~y~p~-----------~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~--- 424 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPS-----------EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRH--- 424 (582)
T ss_pred CeeEEEeeeccCCCc-----------chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeec---
Confidence 368888888876532 12688999999999999999999999999999999986542 34555443
Q ss_pred CCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHH
Q 000860 728 KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL-RHALVGSPGSFGLSTEQ 806 (1250)
Q Consensus 728 ~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~v~~~~~~~lSgGe 806 (1250)
-|.+++|..|..+-+-.+.|.+ +.+....+ | +.+++ .+++-+..+||+.- +... ..+|||||
T Consensus 425 -----~r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~-p-G~~~e----e~r~hl~~~Gl~g~la~~s-----i~~LSGGQ 487 (582)
T KOG0062|consen 425 -----PRLRIKYFAQHHVDFLDKNVNA-VDFMEKSF-P-GKTEE----EIRRHLGSFGLSGELALQS-----IASLSGGQ 487 (582)
T ss_pred -----ccceecchhHhhhhHHHHHhHH-HHHHHHhC-C-CCCHH----HHHHHHHhcCCCchhhhcc-----ccccCCcc
Confidence 3467899999865554555554 33444443 2 22333 35677888999753 2222 24699999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCC
Q 000860 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 807 rqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
|-||++|.....+|.+|+|||||+.||..+-..+.+.|+.. +..||+++|+.+ -+-..|+.+.+.++|...-+.|.
T Consensus 488 KsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ieg~ 563 (582)
T KOG0062|consen 488 KSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTPIEGG 563 (582)
T ss_pred hhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEeeecc
Confidence 99999999999999999999999999999999999999875 568999999964 46778999999987655555555
Q ss_pred C
Q 000860 887 L 887 (1250)
Q Consensus 887 ~ 887 (1250)
.
T Consensus 564 ~ 564 (582)
T KOG0062|consen 564 I 564 (582)
T ss_pred H
Confidence 3
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=322.38 Aligned_cols=210 Identities=20% Similarity=0.311 Sum_probs=171.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 589999998763 2458999999999999999999999999999999999765 3589999999875
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcCCH
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~~~lSg 804 (1250)
.. ..+++.++|++|++.+++ .||+||+.+....+. .. ..+++++++++.+++. ...++.++ .|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTKNIA-----ELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcCCcc-----cCCH
Confidence 42 234567899999988886 599999987654321 11 1234578899999995 45566654 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
|||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++++ .|.|||+++|++. ++ ..+|++++|.+.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 999999999999999999999999999999999999999999875 4899999999985 34 57999999964343444
Q ss_pred eCC
Q 000860 884 GGK 886 (1250)
Q Consensus 884 ~g~ 886 (1250)
.|.
T Consensus 219 ~~~ 221 (225)
T PRK10247 219 EAR 221 (225)
T ss_pred hhh
Confidence 443
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=323.49 Aligned_cols=201 Identities=24% Similarity=0.326 Sum_probs=167.2
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--eeEEEEEECCccCCcccc-cceEEEEcCCCC--CCCCCC
Q 000860 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG--YIEGDIKISGYPKEQSTF-ARISGYVEQEDV--HSPQVT 751 (1250)
Q Consensus 677 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~~~~~~~~-~~~~~yv~q~~~--~~~~lt 751 (1250)
+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999987531 158999999988654323 357999999984 556789
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc---ccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000860 752 IEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD---SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEP 828 (1250)
Q Consensus 752 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~---~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEP 828 (1250)
+.|++.+..... .....+.+++++++++.+++. +..++.++ .||||||||++|||+|+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKKYPF-----QLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhCChh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999997765332 112234456789999999997 34555554 4999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 829 TSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 829 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
|+|||..+...+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999985 57788999999985 788888875
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=326.74 Aligned_cols=215 Identities=27% Similarity=0.307 Sum_probs=176.2
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCcc-
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP- 727 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 727 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccc
Confidence 589999998773 2358999999999999999999999999999999999865 357999999987
Q ss_pred ----CCcc---c----ccceEEEEcCCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000860 728 ----KEQS---T----FARISGYVEQEDV--HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-LRHAL 793 (1250)
Q Consensus 728 ----~~~~---~----~~~~~~yv~q~~~--~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~ 793 (1250)
+... . .++.++|++|++. +.+.+|+.||+.+...... .....+.++.+.++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2446999999973 5677899999876432111 1122344566889999999974 55665
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcce
Q 000860 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDEL 872 (1250)
Q Consensus 794 v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 872 (1250)
+. .||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|++. .+...+|++
T Consensus 149 ~~-----~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 PT-----TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred Cc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 54 49999999999999999999999999999999999999999999998764 899999999974 466789999
Q ss_pred eeeecCcEEEEeCCC
Q 000860 873 LLMKRGGRVIYGGKL 887 (1250)
Q Consensus 873 ~~l~~gg~~~~~g~~ 887 (1250)
++|.+ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 799988875
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=327.90 Aligned_cols=215 Identities=23% Similarity=0.309 Sum_probs=175.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CeeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 589999998873 2458999999999999999999999999999999999642 1 13579999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD----SLRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++. |++||+.+...... .......++.+.++++.+++. +..++.++
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~- 163 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSSAL- 163 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcc-
Confidence 87642 1345679999999988875 99999987643221 112223345677888888885 23344443
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 164 ----~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 164 ----SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred ----cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 5999999999999999999999999999999999999999999999865 689999999975 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 5 788888875
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=325.57 Aligned_cols=217 Identities=24% Similarity=0.309 Sum_probs=178.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 725 (1250)
.++++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 589999998873 235899999999999999999999999999999999976532 1469999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL----RHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~----~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++ .|++||+.+...... ..+..+.++++.++++.+++.+. .++.+
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 148 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHKSA-- 148 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcCCc--
Confidence 87531 234567999999988887 899999988654321 11233445678889999988542 33333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLM 875 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l 875 (1250)
..||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|
T Consensus 149 ---~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l 224 (261)
T PRK14258 149 ---LDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFF 224 (261)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEE
Confidence 35999999999999999999999999999999999999999999999865 4899999999985 578899999999
Q ss_pred ecC----cEEEEeCCC
Q 000860 876 KRG----GRVIYGGKL 887 (1250)
Q Consensus 876 ~~g----g~~~~~g~~ 887 (1250)
+++ |++++.|+.
T Consensus 225 ~~~~~~~G~i~~~~~~ 240 (261)
T PRK14258 225 KGNENRIGQLVEFGLT 240 (261)
T ss_pred ccCCCcCceEEEeCCH
Confidence 853 789999886
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=325.33 Aligned_cols=213 Identities=22% Similarity=0.304 Sum_probs=174.7
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--eeEEEEEECCc
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG--YIEGDIKISGY 726 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 726 (1250)
.++++|+++.++ +.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~ 69 (254)
T PRK10418 4 QIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69 (254)
T ss_pred EEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe
Confidence 689999998761 24899999999999999999999999999999999986531 15799999998
Q ss_pred cCCcccc-cceEEEEcCCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCCC
Q 000860 727 PKEQSTF-ARISGYVEQEDV--HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS---LRHALVGSPGSF 800 (1250)
Q Consensus 727 ~~~~~~~-~~~~~yv~q~~~--~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~---~~~~~v~~~~~~ 800 (1250)
++..... ++.++||+|++. +.+..|+.+++.+..... .... ..+++.++++.+++.+ ..++.++
T Consensus 70 ~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~----- 139 (254)
T PRK10418 70 PVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKLYPF----- 139 (254)
T ss_pred eccccccccceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhcCCc-----
Confidence 8653332 357999999974 446689999887654322 1111 2356788999999976 3455543
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|.+ |
T Consensus 140 ~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~-G 217 (254)
T PRK10418 140 EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH-G 217 (254)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 59999999999999999999999999999999999999999999998764 899999999975 46678999999985 7
Q ss_pred EEEEeCCC
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
+++..|+.
T Consensus 218 ~i~~~~~~ 225 (254)
T PRK10418 218 RIVEQGDV 225 (254)
T ss_pred EEEEecCH
Confidence 89888875
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=315.80 Aligned_cols=195 Identities=28% Similarity=0.344 Sum_probs=167.0
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccc
Confidence 5788887763 2458999999999999999999999999999999999876 357999999987532
Q ss_pred --ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000860 731 --STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808 (1250)
Q Consensus 731 --~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerq 808 (1250)
..+++.++|++|++.+++.+||+||+.+.... . .+++++++++.+++.+..++.+. .|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPVA-----QLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCchh-----hCCHHHHH
Confidence 23566799999999888899999999875311 1 23457889999999887777664 49999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeee
Q 000860 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLM 875 (1250)
Q Consensus 809 r~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 875 (1250)
|++|||+|+.+|++++|||||+|||+.+...+.+.|+++.++|+|+|+++|++. +....+|+++++
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999999999999999999999999999998777999999999985 577788888776
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=329.67 Aligned_cols=215 Identities=23% Similarity=0.306 Sum_probs=175.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CeeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 589999998873 2358999999999999999999999999999999999642 1 12589999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD----SLRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++. ||.||+.+....+. ..+....++++.++++.+++. +..++.+
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 180 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKNA-- 180 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCCh--
Confidence 87532 1346679999999988875 99999998754321 112233456677888888874 3334444
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 181 ---~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 181 ---LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 35999999999999999999999999999999999999999999999865 689999999985 5678899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |+++..|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 5 788888875
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=327.46 Aligned_cols=213 Identities=23% Similarity=0.325 Sum_probs=174.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CeeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 725 (1250)
.++++|+++.+. ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 589999998873 23589999999999999999999999999999999997642 13579999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS----LRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++. ||.||+.+....+. ... +..++++++++.+++.+ ..+..+
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~-- 178 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSSG-- 178 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCCc--
Confidence 87532 2346789999999888875 99999988754331 122 33456888999998853 334444
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhccee-ee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELL-LM 875 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~-~l 875 (1250)
..||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++...+|+++ +|
T Consensus 179 ---~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 179 ---LDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 35999999999999999999999999999999999999999999999976 489999999975 5677899976 55
Q ss_pred ecCcEEEEeCCC
Q 000860 876 KRGGRVIYGGKL 887 (1250)
Q Consensus 876 ~~gg~~~~~g~~ 887 (1250)
. +|+++..|+.
T Consensus 254 ~-~G~i~~~g~~ 264 (285)
T PRK14254 254 T-GGELVEFDDT 264 (285)
T ss_pred e-CCEEEEeCCH
Confidence 6 4788888774
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=316.28 Aligned_cols=199 Identities=24% Similarity=0.311 Sum_probs=166.3
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 57889988763 2358999999999999999999999999999999999876 35799999998754
Q ss_pred c--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 730 Q--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 730 ~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
. ..+++.++|++|++.+++.+||.|++.+....+. . ..+++++++++.+|+.+..++.++ .||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPVR-----QLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCChh-----hcCHHHH
Confidence 3 2345678999999988999999999988754321 1 223567889999999887777665 4999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeee
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLM 875 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 875 (1250)
||++||++|+.+|++++|||||+|||+.+...+.+.|++++++|+|||+++|++. .+-..-+|++.+
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999998777899999999975 344433455444
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=371.44 Aligned_cols=214 Identities=29% Similarity=0.459 Sum_probs=178.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++|+|+++.|+. ++++|+|+|++++|||++||+||||||||||+++|.|..+ +.+|+|.+||.++
T Consensus 328 ~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~dI 393 (567)
T COG1132 328 SIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGIDI 393 (567)
T ss_pred eEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEeh
Confidence 5899999999853 4579999999999999999999999999999999999876 3589999999886
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHH-HH--HcCCcccccccccCCCCCcC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEV-MS--LVELDSLRHALVGSPGSFGL 802 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~-l~--~l~l~~~~~~~v~~~~~~~l 802 (1250)
+. ..+|+.++||+||+.+|. .||+||+.++.. +.++++..+.++.+ ++ ...+.+..||.+|+. +..|
T Consensus 394 ~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~-G~~L 466 (567)
T COG1132 394 RDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIANLPDGYDTIVGER-GVNL 466 (567)
T ss_pred hhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCcccccceecCC-CccC
Confidence 54 567899999999999987 799999988632 24555544443332 11 113344678999853 4579
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEE
Q 000860 803 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882 (1250)
Q Consensus 803 SgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 882 (1250)
|||||||++||||+++||+||+||||||+||+.++..+++.++++. +++|+|+++|+++ ....+|+|++|++ |+++
T Consensus 467 SgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~-G~i~ 542 (567)
T COG1132 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN-GRIV 542 (567)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999876 5789999999985 4566999999986 7899
Q ss_pred EeCCC
Q 000860 883 YGGKL 887 (1250)
Q Consensus 883 ~~g~~ 887 (1250)
+.|+.
T Consensus 543 e~G~h 547 (567)
T COG1132 543 ERGTH 547 (567)
T ss_pred EecCH
Confidence 99986
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=360.68 Aligned_cols=219 Identities=26% Similarity=0.322 Sum_probs=184.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEEC
Confidence 589999998873 2458999999999999999999999999999999999875 3579999999876
Q ss_pred Ccc----cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCC-CCC---CCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000860 729 EQS----TFARISGYVEQEDVHSPQVTIEESLWFSANLRL-PKE---ISKDQRHEFVEEVMSLVELDSLRHALVGSPGSF 800 (1250)
Q Consensus 729 ~~~----~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~-~~~---~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~ 800 (1250)
... ..++.++||+|++.+++.+||+||+.+...... ..+ .+.++.+++++++++.+||.+..++.+++
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 145 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVAN---- 145 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhh----
Confidence 431 123569999999989999999999987532110 001 12334556789999999999888887764
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++...+|++++|.+ |+
T Consensus 146 -LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 146 -LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999878999999999975 57788999999985 78
Q ss_pred EEEeCCCCc
Q 000860 881 VIYGGKLGV 889 (1250)
Q Consensus 881 ~~~~g~~~~ 889 (1250)
+++.|+.+.
T Consensus 223 i~~~g~~~~ 231 (510)
T PRK09700 223 SVCSGMVSD 231 (510)
T ss_pred Eeeecchhh
Confidence 889888753
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=356.83 Aligned_cols=123 Identities=24% Similarity=0.360 Sum_probs=100.2
Q ss_pred CCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCcCCHHHHHHHHHHHHHhh---CCcEEE
Q 000860 749 QVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL-RHALVGSPGSFGLSTEQRKRLTIAVELVA---NPSIIF 824 (1250)
Q Consensus 749 ~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~v~~~~~~~lSgGerqr~~ia~~l~~---~p~il~ 824 (1250)
.+||.|.+.|...+. .. .+..++++.+||... .+..+. .|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~~~-----tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQPAT-----TLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCccc-----cCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467777777765432 11 124578888999753 455543 499999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee-----cCcEEEEeCCC
Q 000860 825 MDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK-----RGGRVIYGGKL 887 (1250)
Q Consensus 825 lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~-----~gg~~~~~g~~ 887 (1250)
|||||+|||+.+...+++.|+++.++|.|||+++|++. ....+|++++|. +||++++.|++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999974 457899999994 47899999986
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=324.61 Aligned_cols=215 Identities=27% Similarity=0.314 Sum_probs=175.6
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..... +.+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 588999998773 235899999999999999999999999999999999964321 2479999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS----LRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~v~~ 796 (1250)
.++.. ...++.++|++|++.+++. ||+||+.+....+. .....+.++.+.++++.+++.+ ..++.+
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 147 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHDSA-- 147 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhcCh--
Confidence 87642 2345679999999988874 99999998754431 1122334556788888888753 233433
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 148 ---~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14261 148 ---LSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY 222 (253)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE
Confidence 35999999999999999999999999999999999999999999999865 689999999975 4667899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |+++..|+.
T Consensus 223 ~-G~i~~~g~~ 232 (253)
T PRK14261 223 L-GKLIEFDKT 232 (253)
T ss_pred C-CEEEEcCCH
Confidence 5 788888875
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=375.72 Aligned_cols=208 Identities=30% Similarity=0.391 Sum_probs=176.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++++|+. .++++|+|+|++++|||.+||+|+||||||||+|+|+|..+ +.+|+|.+||.++
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEc
Confidence 6899999999852 23569999999999999999999999999999999999876 4589999999986
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~v~~~~ 798 (1250)
++ ..+|+.+|||+|++.+|+ .|++||+.++. | .+++ .+.++++..++.+ -.||.+|+.+
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige~G 586 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISEGG 586 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CCHH----HHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 53 467889999999999885 59999998752 1 2333 3566677776654 3467777644
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|+++|+++ ..+.+|+|++|++
T Consensus 587 -~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~- 659 (686)
T TIGR03797 587 -GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA- 659 (686)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999876 589999999974 5688999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 660 G~iv~~G~~ 668 (686)
T TIGR03797 660 GRVVQQGTY 668 (686)
T ss_pred CEEEEECCH
Confidence 899999985
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=324.08 Aligned_cols=215 Identities=22% Similarity=0.293 Sum_probs=175.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--C-eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG--G-YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g 725 (1250)
.++++|+++.++ .+++|+|+|++|++||+++|+|+||||||||+++|+|..++ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478999998873 23589999999999999999999999999999999997641 1 2589999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS----LRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++ .||+||+.+...... ....+..++.++++++.+++.. ..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 145 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRNA-- 145 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccCh--
Confidence 87532 234567999999988876 799999987654321 1122334456788899999842 233333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 146 ---~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 146 ---QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 45999999999999999999999999999999999999999999999854 799999999985 5677899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 5 788888775
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=290.59 Aligned_cols=216 Identities=22% Similarity=0.326 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++.+|+.+.| +...+|++||+..+.|+.+.|+|.|||||||+|+||.-..+ +..|.|.+||..+
T Consensus 6 ~l~v~dlHK~~-------------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei 70 (256)
T COG4598 6 ALEVEDLHKRY-------------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEI 70 (256)
T ss_pred ceehhHHHhhc-------------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEE
Confidence 35666766555 34569999999999999999999999999999999987655 4579999999753
Q ss_pred Cc----------------ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccc
Q 000860 729 EQ----------------STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHA 792 (1250)
Q Consensus 729 ~~----------------~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~ 792 (1250)
.- ...|.+.|+|+|...+++.+||.||+.-+.- +. .+.++.+..++.+..+...|+.+.+|.
T Consensus 71 ~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPv-hV-Lg~~k~ea~e~Ae~~L~kVGi~ek~~~ 148 (256)
T COG4598 71 RLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPV-HV-LGVSKAEAIERAEKYLAKVGIAEKADA 148 (256)
T ss_pred EeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcch-Hh-hcCCHHHHHHHHHHHHHHhCchhhhhc
Confidence 21 1234467999999999999999999865421 11 245677888889999999999998887
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcce
Q 000860 793 LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDEL 872 (1250)
Q Consensus 793 ~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 872 (1250)
.... |||||+||++|||||+.+|+++++|||||+|||+-.-++.+.+++++++|+|.+++||.... .-+...++
T Consensus 149 YP~~-----LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v 222 (256)
T COG4598 149 YPAH-----LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHV 222 (256)
T ss_pred Cccc-----cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhhe
Confidence 7654 99999999999999999999999999999999999999999999999999999999998753 55677899
Q ss_pred eeeecCcEEEEeCCCC
Q 000860 873 LLMKRGGRVIYGGKLG 888 (1250)
Q Consensus 873 ~~l~~gg~~~~~g~~~ 888 (1250)
+.|.+ |.+...||++
T Consensus 223 ~fLh~-G~iEE~G~P~ 237 (256)
T COG4598 223 IFLHQ-GKIEEEGPPE 237 (256)
T ss_pred EEeec-ceecccCChH
Confidence 99986 8999999983
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=322.99 Aligned_cols=220 Identities=24% Similarity=0.311 Sum_probs=176.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|.....+.+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 589999998773 2358999999999999999999999999999999999631124689999999876
Q ss_pred Ccc---cccc-eEEEEcCCCCCCCCCCHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000860 729 EQS---TFAR-ISGYVEQEDVHSPQVTIEESLWFSANLRLP----KEISKDQRHEFVEEVMSLVELD-SLRHALVGSPGS 799 (1250)
Q Consensus 729 ~~~---~~~~-~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~----~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~ 799 (1250)
... ..++ .++|++|++.+++.+|+.+++.+....... ......+..+++.++++.+++. +..++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 2222 478999999999999999998875432110 0112223345678899999997 35555543
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHh-hcceeeeecC
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEA-FDELLLMKRG 878 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~g 878 (1250)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+... +|++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeC-
Confidence 149999999999999999999999999999999999999999999998877999999999975 34444 799999975
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 899999886
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=323.22 Aligned_cols=215 Identities=24% Similarity=0.321 Sum_probs=173.6
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--CC-eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKT--GG-YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~~-~~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 589999998873 2358999999999999999999999999999999999643 11 2479999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD----SLRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++ .||+||+.+....+.. ...+..++.+.+.++.+++. +..+..+
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~-- 146 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHESA-- 146 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcCc--
Confidence 87632 234567999999998887 6999999886543211 12222345567778888764 2233433
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.+.+|++++|+
T Consensus 147 ---~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 147 ---LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 35999999999999999999999999999999999999999999999865 589999999985 5778899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |+++..|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14255 222 T-GNLIEFADT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 788888775
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=327.84 Aligned_cols=218 Identities=25% Similarity=0.409 Sum_probs=175.8
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~~------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWRN------------GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEecC------------CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 5889999988731 2468999999999999999999999999999999999876 3589999999876
Q ss_pred CcccccceEEEEcCCCCCC--CCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000860 729 EQSTFARISGYVEQEDVHS--PQVTIEESLWFSANLRLP-KEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~~~~--~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgG 805 (1250)
.....++.++|++|++.+. ...++++++.+....... ........+++++++++.+||.+..++.++. ||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGE-----LSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCccc-----CCHH
Confidence 4322234699999997652 234788887653210000 0111223345678899999999888887764 9999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999975 577889998766 4 7888888
Q ss_pred CCC
Q 000860 886 KLG 888 (1250)
Q Consensus 886 ~~~ 888 (1250)
+.+
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=322.87 Aligned_cols=215 Identities=24% Similarity=0.316 Sum_probs=174.7
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 725 (1250)
.++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 478999998773 235899999999999999999999999999999999976532 2369999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS----LRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++. |++||+.+....+.. ...++.++.++++++.+++.+ ..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 145 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLHKSG-- 145 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhhCCc--
Confidence 87532 2346779999999988875 999999887543211 112233456777888888753 233333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|.
T Consensus 146 ---~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14249 146 ---LALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLL 220 (251)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEe
Confidence 4599999999999999999999999999999999999999999999985 5899999999975 5677899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |++++.|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14249 221 T-GDLVEYGRT 230 (251)
T ss_pred C-CeEEEeCCH
Confidence 5 788888875
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=280.54 Aligned_cols=216 Identities=25% Similarity=0.377 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.+.++++++.|.. .++|.||+++.+.||.+.++||||||||||++.|.-... +.+|+..+.|...
T Consensus 2 sirv~~in~~yg~-------------~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~f 66 (242)
T COG4161 2 SIQLNGINCFYGA-------------HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred ceEEccccccccc-------------chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEeccccc
Confidence 4678888887743 457999999999999999999999999999999985443 3578888876532
Q ss_pred --Cc-------ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000860 729 --EQ-------STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGS 799 (1250)
Q Consensus 729 --~~-------~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~ 799 (1250)
+. ..+|+.+|+|+|+-.++|.+||.||+.-+. ++. .+.++++.+.+..++++.+.|.+.+|+..-
T Consensus 67 d~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~pl---- 140 (242)
T COG4161 67 DFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYPL---- 140 (242)
T ss_pred ccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCce----
Confidence 11 246788999999999999999999996553 221 256788888899999999999999998764
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
.|||||+|||+|||||+.+|.+|++||||++||++-..+++++|++++..|.|=++++|.... .-+.+.+++.|.+ |
T Consensus 141 -hlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme~-g 217 (242)
T COG4161 141 -HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYMEN-G 217 (242)
T ss_pred -ecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeeec-C
Confidence 499999999999999999999999999999999999999999999999999999999998642 4567899999985 8
Q ss_pred EEEEeCCCC
Q 000860 880 RVIYGGKLG 888 (1250)
Q Consensus 880 ~~~~~g~~~ 888 (1250)
+++..|+..
T Consensus 218 ~ive~g~a~ 226 (242)
T COG4161 218 HIVEQGDAS 226 (242)
T ss_pred eeEeecchh
Confidence 999999864
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=325.66 Aligned_cols=225 Identities=24% Similarity=0.343 Sum_probs=180.8
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.+.... ..+ ...++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 3 ~l~~~nl~~~~~~~~---~~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~ 76 (268)
T PRK10419 3 LLNVSGLSHHYAHGG---LSG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPL 76 (268)
T ss_pred eEEEeceEEEecCCc---ccc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEec
Confidence 478999998874210 000 0013569999999999999999999999999999999999865 3589999999875
Q ss_pred Cc------ccccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000860 729 EQ------STFARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHALVGSPGS 799 (1250)
Q Consensus 729 ~~------~~~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~ 799 (1250)
.. ...++.++|++|++ .+.+..|+.|++.+..... ......+..++++++++.+|+. +..++.++
T Consensus 77 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 150 (268)
T PRK10419 77 AKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRPP---- 150 (268)
T ss_pred cccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCCc----
Confidence 42 12456799999997 3567899999987653211 1223444556789999999996 46666554
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|++++++ |+|||+++|++. ++...+|++++|.+
T Consensus 151 -~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~- 227 (268)
T PRK10419 151 -QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN- 227 (268)
T ss_pred -cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-
Confidence 49999999999999999999999999999999999999999999998765 899999999975 56678999999985
Q ss_pred cEEEEeCCCC
Q 000860 879 GRVIYGGKLG 888 (1250)
Q Consensus 879 g~~~~~g~~~ 888 (1250)
|++++.|+..
T Consensus 228 G~i~~~g~~~ 237 (268)
T PRK10419 228 GQIVETQPVG 237 (268)
T ss_pred CEEeeeCChh
Confidence 7898888864
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=325.63 Aligned_cols=215 Identities=23% Similarity=0.256 Sum_probs=173.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CeeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 589999998874 2358999999999999999999999999999999999754 1 13589999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD----SLRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++ .||+||+.+....+. ....+..++.+.++++.+++. +..+..+
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~-- 165 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNA-- 165 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCc--
Confidence 87632 234667999999998887 499999988754321 112223345567777777542 2333333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 166 ---~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 166 ---YGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 45999999999999999999999999999999999999999999999865 799999999975 5678899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |+++..|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 5 788888875
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=326.25 Aligned_cols=211 Identities=22% Similarity=0.322 Sum_probs=173.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++. +...+|+|+|++|++||+++|+||||||||||+++|+|..+ .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4789999998842 12358999999999999999999999999999999999875 369999999886
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccC------CCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS------PGS 799 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~------~~~ 799 (1250)
.. ..+++.++|++|++.+++ .||++|+.... ..++ +.+.++++.+||.+..+..++. +..
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 345678999999999887 49999995321 1122 3456778888987665554432 133
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
..||||||||++|||||+.+|+|++|||||++||+.+...+++.|+++. .++|||+++|++. ....+|++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~--~i~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE--AMLECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEecC-C
Confidence 5699999999999999999999999999999999999999999999875 4899999999974 3456999999985 7
Q ss_pred EEEEeCCCC
Q 000860 880 RVIYGGKLG 888 (1250)
Q Consensus 880 ~~~~~g~~~ 888 (1250)
++++.|+++
T Consensus 213 ~i~~~g~~~ 221 (275)
T cd03289 213 KVRQYDSIQ 221 (275)
T ss_pred eEeecCCHH
Confidence 888988863
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=351.19 Aligned_cols=193 Identities=25% Similarity=0.431 Sum_probs=159.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHccCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~ 77 (1250)
.||||||||+||||+.++|..+++|+ +|+|.+||+|+++. .+++.||+|.|+|.+|. .||+|||.|+.. ..
T Consensus 496 ~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~--~~ 569 (716)
T KOG0058|consen 496 VVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD--NA 569 (716)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC--CC
Confidence 48999999999999999999999976 99999999998655 46899999999988886 599999999854 11
Q ss_pred CcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHH
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA 157 (1250)
.+ +++.+..+.. .. .++ ..++++.+||.||++|. +||||||||++||
T Consensus 570 t~------e~i~~AAk~A------Na-----------------h~F---I~~~p~gY~T~VGEkG~-qLSGGQKQRIAIA 616 (716)
T KOG0058|consen 570 TD------EEIEAAAKMA------NA-----------------HEF---ITNFPDGYNTVVGEKGS-QLSGGQKQRIAIA 616 (716)
T ss_pred CH------HHHHHHHHHh------Ch-----------------HHH---HHhCccccccccCCccc-cccchHHHHHHHH
Confidence 11 1111111100 01 222 23589999999998765 4999999999999
Q ss_pred HHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 158 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
|||++||.||||||.||+||+.++..+.+.|.+..+ ++||+++- |+.++.+.+|+|+++++|++++.|+++|+.+
T Consensus 617 RALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIA--HRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 617 RALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIA--HRLSTVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEe--hhhhHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999999999999999999999999999999875 58888763 3678899999999999999999999999875
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=326.34 Aligned_cols=209 Identities=28% Similarity=0.432 Sum_probs=163.2
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++. .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHh
Confidence 57888887632 12468999999999999999999999999999999999875 357999999987532
Q ss_pred ---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHH-----HHHHHHHHc--CCcccccccccCCCCC
Q 000860 731 ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHE-----FVEEVMSLV--ELDSLRHALVGSPGSF 800 (1250)
Q Consensus 731 ---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--~l~~~~~~~v~~~~~~ 800 (1250)
..+++.++|++|++.+++ .||+||+.+... ........+ ..+++++.+ ++....+..+ .
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-----~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQG-----A 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCC-----C
Confidence 234667999999987764 699999976421 111111111 112333333 3333333333 4
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++++ |+|||+++|++. ++ ..+|++++|.+ |+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~-G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK-GR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC-CE
Confidence 5999999999999999999999999999999999999999999999864 899999999985 34 57999999985 78
Q ss_pred EEEeCCC
Q 000860 881 VIYGGKL 887 (1250)
Q Consensus 881 ~~~~g~~ 887 (1250)
+++.|+.
T Consensus 214 i~~~~~~ 220 (237)
T cd03252 214 IVEQGSH 220 (237)
T ss_pred EEEEcCH
Confidence 8888875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=356.80 Aligned_cols=220 Identities=22% Similarity=0.370 Sum_probs=182.3
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..++++.+|+|.++|.++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 57889998773 23589999999999999999999999999999999997653235899999998764
Q ss_pred ccc----ccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCcCC
Q 000860 730 QST----FARISGYVEQEDVHSPQVTIEESLWFSANLRLPK-EISKDQRHEFVEEVMSLVELDSLR-HALVGSPGSFGLS 803 (1250)
Q Consensus 730 ~~~----~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~l~l~~~~-~~~v~~~~~~~lS 803 (1250)
... .++.+|||+|++.+++.+||+|++.+........ ....++.+++++++++.+++.+.. ++.++ .||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVG-----DYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchh-----hCC
Confidence 311 2456999999998899999999998864332111 122344556788999999998654 45554 499
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
|||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++...+|++++|++ |+++.
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999975 57788999999986 78888
Q ss_pred eCCCCc
Q 000860 884 GGKLGV 889 (1250)
Q Consensus 884 ~g~~~~ 889 (1250)
.|+...
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 887653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=328.71 Aligned_cols=217 Identities=28% Similarity=0.404 Sum_probs=182.7
Q ss_pred CCeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECC
Q 000860 646 HPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG 725 (1250)
Q Consensus 646 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 725 (1250)
....++|+|+++.|+. ++++|+||||++.||+.+|++||||+||||++++|....+ ..+|.|.+||
T Consensus 534 ~~G~i~fsnvtF~Y~p------------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~iDg 599 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYDP------------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSITIDG 599 (790)
T ss_pred cCCeEEEEEeEEecCC------------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEEEcC
Confidence 3457999999999863 5689999999999999999999999999999999997654 4589999999
Q ss_pred ccCCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHH--HH-HHcCCcccccccccCCCC
Q 000860 726 YPKEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEE--VM-SLVELDSLRHALVGSPGS 799 (1250)
Q Consensus 726 ~~~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~--~l-~~l~l~~~~~~~v~~~~~ 799 (1250)
++++. .++|+.||.||||..+| +.|+..|++|+. | +.++++..+.++. +- +.++..+-.++.||+.+.
T Consensus 600 qdIrnvt~~SLRs~IGVVPQDtvLF-NdTI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGL 673 (790)
T KOG0056|consen 600 QDIRNVTQSSLRSSIGVVPQDTVLF-NDTILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGL 673 (790)
T ss_pred chHHHHHHHHHHHhcCcccCcceee-cceeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccc
Confidence 99764 56888999999999988 469999998862 2 2344444333222 11 346778888999998665
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
+ |||||||||+|||+++++|.|++|||+||+||..+++.|+..|.++++ ++|.|++.|+.|. .-.+|.|+++++ |
T Consensus 674 k-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~-G 748 (790)
T KOG0056|consen 674 K-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVISN-G 748 (790)
T ss_pred c-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEeC-C
Confidence 4 999999999999999999999999999999999999999999999974 8999999999863 457899999986 8
Q ss_pred EEEEeCCC
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
++++.|.-
T Consensus 749 ~IvErG~H 756 (790)
T KOG0056|consen 749 RIVERGRH 756 (790)
T ss_pred eEeecCcH
Confidence 99999874
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=356.60 Aligned_cols=211 Identities=23% Similarity=0.369 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEC
Confidence 589999999873 2458999999999999999999999999999999999876 3589999999876
Q ss_pred Ccc---c-ccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQS---T-FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~~---~-~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
... . .++.+||++|++.+++.+||+|++.+... ...+.+++++++++.++|.+..++.++. |||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP-------KRQASMQKMKQLLAALGCQLDLDSSAGS-----LEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc-------cchHHHHHHHHHHHHcCCCccccCChhh-----CCH
Confidence 431 1 23468999999999999999999987531 1123456788999999999888887764 999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEe
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 884 (1250)
||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++...||++++|.+ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999878999999999975 57788999999985 788888
Q ss_pred CCCC
Q 000860 885 GKLG 888 (1250)
Q Consensus 885 g~~~ 888 (1250)
|+.+
T Consensus 222 g~~~ 225 (510)
T PRK15439 222 GKTA 225 (510)
T ss_pred cChH
Confidence 8864
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=317.01 Aligned_cols=191 Identities=26% Similarity=0.417 Sum_probs=160.1
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCCHH
Q 000860 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIE 753 (1250)
Q Consensus 674 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~ 753 (1250)
++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+||+
T Consensus 34 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~tv~ 102 (224)
T cd03220 34 EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELTGR 102 (224)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCcHH
Confidence 4679999999999999999999999999999999999866 458999999986421 11123345779999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCC
Q 000860 754 ESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833 (1250)
Q Consensus 754 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD 833 (1250)
||+.+..... ..+..+.+++++++++.+++.+..++.++ .||||||||++|||+|+.+|++++|||||+|||
T Consensus 103 enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP~~gLD 174 (224)
T cd03220 103 ENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILLIDEVLAVGD 174 (224)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9998875432 12334455678889999999888887775 499999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 834 ARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 834 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
+.++..+.+.|++++++|+|||+++|++. ++...+|++++|.+ |++++.|
T Consensus 175 ~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 175 AAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999998777899999999974 56778999999985 7877654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=367.14 Aligned_cols=212 Identities=26% Similarity=0.386 Sum_probs=177.7
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++|.|+. +++++|+|+|++++|||++||+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 341 ~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 407 (582)
T PRK11176 341 DIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD--IDEGEILLDGHDL 407 (582)
T ss_pred eEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC--CCCceEEECCEEh
Confidence 5899999998853 23569999999999999999999999999999999999876 3579999999986
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-------SLRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~v~~~~ 798 (1250)
+. ..+++.++||||++.+++ .|++||+.++. +...+++ .++++++..++. +-.||.+|+.+
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~----~i~~al~~~~l~~~i~~lp~Gldt~ig~~g 478 (582)
T PRK11176 408 RDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSRE----QIEEAARMAYAMDFINKMDNGLDTVIGENG 478 (582)
T ss_pred hhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCHH----HHHHHHHHhCcHHHHHhcccccCceeCCCC
Confidence 53 457788999999999886 69999997642 2123333 355566666543 34577787644
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
..||||||||++|||||+++|+|++||||||+||+.++..+++.|+++. +++|+|+++|+++ ..+.||+|++|++
T Consensus 479 -~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~- 553 (582)
T PRK11176 479 -VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED- 553 (582)
T ss_pred -CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC-
Confidence 5799999999999999999999999999999999999999999999874 4799999999974 6788999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 554 g~i~e~g~~ 562 (582)
T PRK11176 554 GEIVERGTH 562 (582)
T ss_pred CEEEEeCCH
Confidence 799999885
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=324.90 Aligned_cols=214 Identities=21% Similarity=0.247 Sum_probs=174.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 20 ~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 86 (274)
T PRK14265 20 VFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRD 86 (274)
T ss_pred eEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECC
Confidence 689999998873 235899999999999999999999999999999999975321 2479999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD----SLRHALVGS 796 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~----~~~~~~v~~ 796 (1250)
.++.. ..+++.++|++|++.+++. ||.||+.+....+. .. ...++.+++.++.+++. +..++.+
T Consensus 87 ~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 159 (274)
T PRK14265 87 RNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEKG-- 159 (274)
T ss_pred EecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCCc--
Confidence 87632 2346689999999888875 99999988654321 11 12234466778887764 2333333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.
T Consensus 160 ---~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 234 (274)
T PRK14265 160 ---TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFN 234 (274)
T ss_pred ---ccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 35999999999999999999999999999999999999999999999865 789999999985 5778999999997
Q ss_pred --------cCcEEEEeCCC
Q 000860 877 --------RGGRVIYGGKL 887 (1250)
Q Consensus 877 --------~gg~~~~~g~~ 887 (1250)
+.|++++.|+.
T Consensus 235 ~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 235 TEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred cccccccccCceEEEeCCH
Confidence 25889999886
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=314.15 Aligned_cols=198 Identities=28% Similarity=0.379 Sum_probs=166.6
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 66 (207)
T PRK13539 2 MLEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDI 66 (207)
T ss_pred EEEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeC
Confidence 478999998773 2358999999999999999999999999999999999865 3579999999875
Q ss_pred CcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000860 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerq 808 (1250)
.....++.++|++|++.+++.+||+||+.+....+ ... .+.++++++.+||.+..+..++ .|||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 134 (207)
T PRK13539 67 DDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPFG-----YLSAGQKR 134 (207)
T ss_pred cchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCChh-----hcCHHHHH
Confidence 32225667899999988888999999998765432 111 2347889999999877666665 49999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 809 r~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
|++|||+|+.+|++++|||||+|||+.+...+.+.|++++++|+|||+++|++. ++. . |+++.+.
T Consensus 135 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~-~-~~~~~~~ 199 (207)
T PRK13539 135 RVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLP-G-ARELDLG 199 (207)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhc-c-CcEEeec
Confidence 999999999999999999999999999999999999998777999999999975 343 3 8887774
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=311.00 Aligned_cols=179 Identities=26% Similarity=0.349 Sum_probs=152.3
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc-----ccccceEEEEcCCCC-CC
Q 000860 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-----STFARISGYVEQEDV-HS 747 (1250)
Q Consensus 674 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-----~~~~~~~~yv~q~~~-~~ 747 (1250)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++. .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3569999999999999999999999999999999999876 358999999987531 134567999999973 33
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeC
Q 000860 748 PQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDE 827 (1250)
Q Consensus 748 ~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDE 827 (1250)
...||+||+.+..... ..+.++..++++++++.++|.+..++.+. .||||||||++|||+|+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTH-----CLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999999865432 23344455678899999999888787775 499999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCC
Q 000860 828 PTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPS 862 (1250)
Q Consensus 828 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 862 (1250)
||+|||+.+...+.+.|++++++|+|||+++|++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999974
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=364.79 Aligned_cols=209 Identities=26% Similarity=0.380 Sum_probs=177.8
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+. ++++|+|+|++++|||++||+|+||||||||+|+|+|..++ .+|+|.+||.++
T Consensus 340 ~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i 405 (592)
T PRK10790 340 RIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRPL 405 (592)
T ss_pred eEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEh
Confidence 5899999998842 23599999999999999999999999999999999998764 579999999986
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~v~~~~ 798 (1250)
++ ..+++.++||||++.+|+. |++||+.++. ..++ +.++++++..|+.+ -.|+.+|+.
T Consensus 406 ~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~- 473 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLYTPLGEQ- 473 (592)
T ss_pred hhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhccccccccccCC-
Confidence 53 4678899999999999875 9999998752 1233 33667777777654 346677663
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
+..||||||||++|||||+++|+|++||||||+||+.+++.+.+.|+++.+ ++|+|+++|+++ ....+|+|++|++
T Consensus 474 g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~- 549 (592)
T PRK10790 474 GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHR- 549 (592)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEEC-
Confidence 356999999999999999999999999999999999999999999998854 799999999984 5778999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 550 G~i~~~G~~ 558 (592)
T PRK10790 550 GQAVEQGTH 558 (592)
T ss_pred CEEEEEcCH
Confidence 899999885
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=304.72 Aligned_cols=168 Identities=29% Similarity=0.453 Sum_probs=148.7
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEccc
Confidence 5788887763 2358999999999999999999999999999999999865 357999999987643
Q ss_pred --ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000860 731 --STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808 (1250)
Q Consensus 731 --~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerq 808 (1250)
..+++.++|++|++.+++.+|+.|++. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567999999998888899999763 8999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 809 r~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++. ++...+|++++|++|
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999877899999999975 567789999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=362.32 Aligned_cols=211 Identities=28% Similarity=0.452 Sum_probs=178.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+. +++++|+|+|++++|||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 338 ~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--p~~G~I~i~g~~i 404 (574)
T PRK11160 338 SLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD--PQQGEILLNGQPI 404 (574)
T ss_pred eEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEh
Confidence 6899999998842 12468999999999999999999999999999999999876 4589999999986
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc------ccccccCCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL------RHALVGSPGS 799 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~------~~~~v~~~~~ 799 (1250)
++ ..+++.++||+|++.+++ .|++||+.++. | +.++ +.++++++..++.+. .||.+|+. .
T Consensus 405 ~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge~-g 473 (574)
T PRK11160 405 ADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NASD----EALIEVLQQVGLEKLLEDDKGLNAWLGEG-G 473 (574)
T ss_pred hhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-ccCH----HHHHHHHHHcCCHHHHcCccccCchhcCC-C
Confidence 54 457788999999998886 59999998753 1 2232 346777888887654 46777664 3
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
..||||||||++|||+|+++|++|+||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|++++|++ |
T Consensus 474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~-G 549 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN-G 549 (574)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC-C
Confidence 5699999999999999999999999999999999999999999999885 5899999999985 4567999999985 7
Q ss_pred EEEEeCCC
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
+++..|+.
T Consensus 550 ~i~~~g~~ 557 (574)
T PRK11160 550 QIIEQGTH 557 (574)
T ss_pred eEEEeCCH
Confidence 99998885
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=354.94 Aligned_cols=216 Identities=27% Similarity=0.348 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEC
Confidence 488999998873 2358999999999999999999999999999999999865 3579999999876
Q ss_pred Cc----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQ----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
.. ..+++.+||++|++.+++.+||+||+.+.............+.+++++++++.++|.+..++.++ .|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK-----YLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchh-----hCCH
Confidence 42 12456799999999899999999999885321111112334455678899999999877777665 4999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEe
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 884 (1250)
|||||++|||+|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++...+|++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999985 57788999999986 677766
Q ss_pred CC
Q 000860 885 GK 886 (1250)
Q Consensus 885 g~ 886 (1250)
++
T Consensus 222 ~~ 223 (501)
T PRK11288 222 FD 223 (501)
T ss_pred cC
Confidence 54
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=329.64 Aligned_cols=231 Identities=26% Similarity=0.374 Sum_probs=188.8
Q ss_pred cccCCCCeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE
Q 000860 641 MIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 720 (1250)
Q Consensus 641 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~ 720 (1250)
+..|.+...+.++++++..+ ..++++|+|+||.+++||-+||+||||||||||.|+|.|..+ +.+|.
T Consensus 326 m~LP~P~g~L~Ve~l~~~PP-----------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~~G~ 392 (580)
T COG4618 326 MPLPAPQGALSVERLTAAPP-----------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGS 392 (580)
T ss_pred CCCCCCCceeeEeeeeecCC-----------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cCCCc
Confidence 44555556799999987321 245789999999999999999999999999999999999766 45899
Q ss_pred EEECCccCCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCCcccccc
Q 000860 721 IKISGYPKEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQR-----HEFVEEVMSLVELDSLRHA 792 (1250)
Q Consensus 721 i~~~g~~~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~-----~~~v~~~l~~l~l~~~~~~ 792 (1250)
|.+||.++++ +.+-+.+||.||+-.+|+. ||.||+.-. ..+.+.+.. ...|.|++ +.+.+-.||
T Consensus 393 VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf-----~~~~d~~kIieAA~lAgvHelI--l~lP~GYdT 464 (580)
T COG4618 393 VRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIARF-----GEEADPEKVIEAARLAGVHELI--LRLPQGYDT 464 (580)
T ss_pred EEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHhc-----cccCCHHHHHHHHHHcChHHHH--HhCcCCccC
Confidence 9999998654 5677899999999888864 999999522 222232221 12233332 467788899
Q ss_pred cccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcce
Q 000860 793 LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDEL 872 (1250)
Q Consensus 793 ~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 872 (1250)
.+|+.+ ..||||||||+++||||-.||.+++||||-|+||.+.+..+.+.|.+.+++|.|+|+++|+|+ +...+|+|
T Consensus 465 ~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dki 541 (580)
T COG4618 465 RIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKI 541 (580)
T ss_pred ccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhccee
Confidence 999754 579999999999999999999999999999999999999999999999999999999999985 67899999
Q ss_pred eeeecCcEEEEeCCCCccchhHHHHhhh
Q 000860 873 LLMKRGGRVIYGGKLGVHSQIMIDYFQG 900 (1250)
Q Consensus 873 ~~l~~gg~~~~~g~~~~~~~~~~~yf~~ 900 (1250)
++|+ +|++..+|+. ++++.....
T Consensus 542 lvl~-~G~~~~FG~r----~eVLa~~~~ 564 (580)
T COG4618 542 LVLQ-DGRIAAFGPR----EEVLAKVLR 564 (580)
T ss_pred eeec-CChHHhcCCH----HHHHHHhcC
Confidence 9998 5899999997 456665543
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=320.33 Aligned_cols=216 Identities=22% Similarity=0.314 Sum_probs=175.7
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--Ce--eEEEEEEC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG--GY--IEGDIKIS 724 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~--~~--~~G~i~~~ 724 (1250)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ |. +.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 488999998763 34689999999999999999999999999999999997653 11 23666666
Q ss_pred CccCCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000860 725 GYPKEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS----LRHALVGSP 797 (1250)
Q Consensus 725 g~~~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~v~~~ 797 (1250)
|.+... ..+++.++|++|++.+++.+||+||+.+...... ...+++.+++++++++.+++.+ ..+..+
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--- 151 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSPA--- 151 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCCc---
Confidence 665432 2346779999999999999999999998754321 1123455567889999999964 334433
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeec
Q 000860 798 GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 798 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
..||||||||++|||+|+.+|++++|||||+|||..+...+.+.|+++.+ ++|||+++|++. .+...+|++++|++
T Consensus 152 --~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~ 227 (257)
T PRK14246 152 --SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN 227 (257)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 35999999999999999999999999999999999999999999999864 699999999975 46688999999985
Q ss_pred CcEEEEeCCC
Q 000860 878 GGRVIYGGKL 887 (1250)
Q Consensus 878 gg~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 228 -g~i~~~g~~ 236 (257)
T PRK14246 228 -GELVEWGSS 236 (257)
T ss_pred -CEEEEECCH
Confidence 788888875
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=320.47 Aligned_cols=219 Identities=20% Similarity=0.242 Sum_probs=177.1
Q ss_pred eeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEEC
Q 000860 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKIS 724 (1250)
Q Consensus 648 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~ 724 (1250)
..+..+++++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 3577788877652 346899999999999999999999999999999999976431 258999999
Q ss_pred CccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000860 725 GYPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGS 799 (1250)
Q Consensus 725 g~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~ 799 (1250)
|.++.. ..+++.++|++|++.++ .+|+.||+.+....+. . ..+..+.++++++.+++.+..+...+ ...
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCc
Confidence 987632 23466799999998877 5999999998765431 1 22334678889999998643222221 123
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee---
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK--- 876 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~--- 876 (1250)
+.||||||||++|||||+++|++++|||||+|||+.++..+.+.|+++. +++|||+++|++. ++.+.+|++++|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 4699999999999999999999999999999999999999999999985 4799999999985 5778899999996
Q ss_pred ----cCcEEEEeCCC
Q 000860 877 ----RGGRVIYGGKL 887 (1250)
Q Consensus 877 ----~gg~~~~~g~~ 887 (1250)
++|+++..|+.
T Consensus 226 ~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 226 SQGTRTGYLVEMGPT 240 (261)
T ss_pred ccccCCceEEEeCCH
Confidence 35899998875
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=335.35 Aligned_cols=224 Identities=23% Similarity=0.323 Sum_probs=188.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC--eeEEEEEECCc
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG--YIEGDIKISGY 726 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~--~~~G~i~~~g~ 726 (1250)
.++++||+..+.... +...+++||||++.+||++||+|.|||||||+.++|.|..+.+ ..+|+|.++|.
T Consensus 5 lL~V~nL~v~~~~~~---------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATDG---------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecCC---------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 589999998886531 2357999999999999999999999999999999999976543 35799999998
Q ss_pred cCCc-------ccccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000860 727 PKEQ-------STFARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSP 797 (1250)
Q Consensus 727 ~~~~-------~~~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~ 797 (1250)
++.. ....+.++|++|++ .+.|-+||.+.+.-...++.. .+.++.++++.++++++||.+-... +.
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 6432 12346799999996 466789999988766665532 3477788889999999999887655 33
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 798 GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 798 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
.+..||||||||+.||+||+.+|++|++||||++||+.++.+|.+.|+++.+ .|.++|+||||+. -+.+.+|||+||.
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEE
Confidence 4567999999999999999999999999999999999999999999999974 5999999999985 4788999999998
Q ss_pred cCcEEEEeCCCC
Q 000860 877 RGGRVIYGGKLG 888 (1250)
Q Consensus 877 ~gg~~~~~g~~~ 888 (1250)
+ |++++.|+.+
T Consensus 230 ~-G~iVE~G~~~ 240 (539)
T COG1123 230 K-GEIVETGPTE 240 (539)
T ss_pred C-CEEEEecCHH
Confidence 5 8999999973
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=316.05 Aligned_cols=191 Identities=27% Similarity=0.411 Sum_probs=165.9
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecC----cccccceEEeecccc-ccCCCCCHHHHHHHHHHccC
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELD----EFQVQRASAYIGQTD-NHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 2 ~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~----~~~~~~~~~yv~Q~~-~~~~~~TV~e~l~f~~~~~~ 76 (1250)
++|+||||||||||+++|+|+++|. +|.|.++|.+.. ....++.+|||.|++ ..+...||.|.+.|+....+
T Consensus 33 ~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g 109 (235)
T COG1122 33 VLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG 109 (235)
T ss_pred EEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC
Confidence 7899999999999999999999975 899999999875 345688999999985 67777899999999987655
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
...+ + .+.+++++|+.+||.+.++..+-. |||||||||+|
T Consensus 110 ~~~~---------------------e--------------~~~rv~~~l~~vgl~~~~~r~p~~-----LSGGqkqRvaI 149 (235)
T COG1122 110 LPRE---------------------E--------------IEERVAEALELVGLEELLDRPPFN-----LSGGQKQRVAI 149 (235)
T ss_pred CCHH---------------------H--------------HHHHHHHHHHHcCchhhccCCccc-----cCCcceeeHHh
Confidence 4321 0 112478899999999988877654 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
|.+|+.+|++|+|||||||||+.++.++++.++++.++.++|+|++ +|+.+.+..++|++++|++|+++++|++.++.+
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~-tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIV-THDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEE-eCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 9999999999999999999999999999999999987667788876 567889999999999999999999999887754
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=310.58 Aligned_cols=194 Identities=24% Similarity=0.319 Sum_probs=162.3
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEccc
Confidence 5678887663 2468999999999999999999999999999999999865 357999999987542
Q ss_pred --ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000860 731 --STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808 (1250)
Q Consensus 731 --~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerq 808 (1250)
..+++.++|++|++.+++.+||.|++.+....+. . + +++++++++.+++.+..++.++. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPAAQ-----LSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCChhh-----cCHHHHH
Confidence 2345678999999888888999999987654321 1 1 34578899999998887777654 9999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceee
Q 000860 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLL 874 (1250)
Q Consensus 809 r~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 874 (1250)
|++|||+++.+|++++|||||+|||+.+...+.+.|++++++|+|||+++|++.. + .+++++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~--~~~~~~~ 197 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG-L--VEARELR 197 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc-c--cceEEee
Confidence 9999999999999999999999999999999999999987779999999999742 2 3455543
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=375.13 Aligned_cols=209 Identities=31% Similarity=0.440 Sum_probs=175.8
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++|+|+. .++++|+|+|++|+|||.+||+||||||||||+|+|+|..+ +.+|+|.+||.++
T Consensus 477 ~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 543 (710)
T TIGR03796 477 YVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ--PWSGEILFDGIPR 543 (710)
T ss_pred eEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeH
Confidence 6899999999853 23569999999999999999999999999999999999876 4579999999986
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~v~~~~ 798 (1250)
++ ..+|+.+|||+|++.+++ .|++||+.++. | +.+++ .+.++++..++.+ -.|+.+|+.+
T Consensus 544 ~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 544 EEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIPDA----DLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred HHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC----C-CCCHH----HHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 43 457889999999999885 59999997641 1 23333 3455666666543 3467777644
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
.+||||||||++|||||+++|+||+||||||+||+.++..+++.|++ .++|+|+++|+++ ....+|+|++|++
T Consensus 614 -~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~- 686 (710)
T TIGR03796 614 -ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER- 686 (710)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC-
Confidence 57999999999999999999999999999999999999999999985 4899999999974 5678999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 687 G~i~~~G~~ 695 (710)
T TIGR03796 687 GKVVQRGTH 695 (710)
T ss_pred CEEEEecCH
Confidence 899999985
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=321.03 Aligned_cols=215 Identities=27% Similarity=0.303 Sum_probs=174.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCcc-
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP- 727 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~- 727 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccc
Confidence 478999998873 2358999999999999999999999999999999999876 357999999876
Q ss_pred ----CCc---c----cccceEEEEcCCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-cccccc
Q 000860 728 ----KEQ---S----TFARISGYVEQEDV--HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-SLRHAL 793 (1250)
Q Consensus 728 ----~~~---~----~~~~~~~yv~q~~~--~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-~~~~~~ 793 (1250)
+.. . ..++.++|++|++. +.+..|+.||+.+..... . .....+.++.++++++.+++. +..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 322 1 12356899999974 445679999987543211 1 111123446788999999997 356666
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcce
Q 000860 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDEL 872 (1250)
Q Consensus 794 v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 872 (1250)
+. .||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++...+|++
T Consensus 146 ~~-----~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 PR-----AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred ch-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 54 49999999999999999999999999999999999999999999998654 899999999974 566789999
Q ss_pred eeeecCcEEEEeCCC
Q 000860 873 LLMKRGGRVIYGGKL 887 (1250)
Q Consensus 873 ~~l~~gg~~~~~g~~ 887 (1250)
++|++ |+++..|+.
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99985 788888875
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=370.96 Aligned_cols=210 Identities=28% Similarity=0.415 Sum_probs=174.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++++|+.. +++++|+|+|++++|||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 478 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~idg~~i 545 (711)
T TIGR00958 478 LIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ--PTGGQVLLDGVPL 545 (711)
T ss_pred eEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence 58999999998532 13569999999999999999999999999999999999876 3579999999986
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~v~~~~ 798 (1250)
++ ..+++.++||+|++.+++ .|++||+.++. + +.++ +.+.++++..++.+ -.||.+|+.+
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~-~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~G 615 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL----T-DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615 (711)
T ss_pred HhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence 54 457788999999999885 69999998752 1 2233 33566677666644 3567777643
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
.+||||||||++|||||+++|+|++||||||+||++++..+.+ .. ..+++|+|+++|+++ ..+.+|+|++|++
T Consensus 616 -~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~- 688 (711)
T TIGR00958 616 -SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK- 688 (711)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC-
Confidence 5799999999999999999999999999999999999999998 22 235899999999974 5688999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 689 G~ive~Gt~ 697 (711)
T TIGR00958 689 GSVVEMGTH 697 (711)
T ss_pred CEEEEeeCH
Confidence 799999985
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=322.13 Aligned_cols=214 Identities=22% Similarity=0.288 Sum_probs=173.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC--C-eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG--G-YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~--~-~~~G~i~~~g 725 (1250)
.++++|+++.++ ++++|+|+|++|++||+++|+||||||||||+++|+|...+ . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 589999998873 23589999999999999999999999999999999996431 1 2579999999
Q ss_pred ccCC-----cccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000860 726 YPKE-----QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS----LRHALVGS 796 (1250)
Q Consensus 726 ~~~~-----~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~----~~~~~v~~ 796 (1250)
.++. ...+++.++|++|++.+++ .||.||+.+....+ ... .+.++.++++++.+++.+ ..+..+
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~-- 149 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKLKQSG-- 149 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCCc--
Confidence 8753 1234667999999988887 49999998865432 111 223455677788877743 233333
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 150 ---~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~ 224 (264)
T PRK14243 150 ---LSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFN 224 (264)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 35999999999999999999999999999999999999999999999865 589999999985 6888999999997
Q ss_pred c--------CcEEEEeCCC
Q 000860 877 R--------GGRVIYGGKL 887 (1250)
Q Consensus 877 ~--------gg~~~~~g~~ 887 (1250)
+ .|+++..|+.
T Consensus 225 ~~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 225 VELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccccccCceEEEeCCH
Confidence 2 4789988875
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=319.67 Aligned_cols=219 Identities=25% Similarity=0.333 Sum_probs=175.8
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCC--C-CeeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~--~-~~~~G~i~~~g 725 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.+||
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 578899998763 2358999999999999999999999999999999999643 1 12579999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSF 800 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~ 800 (1250)
.++.. ...++.++|++|++.+++. |+.||+.+..... ...+.+..++++.++++.+++.+....... ....
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKLD-KSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcc
Confidence 87642 2346679999999988875 9999998764322 112233455678889999988542111111 1224
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++...+|++++|++ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 5999999999999999999999999999999999999999999999864 899999999985 57888999999985 79
Q ss_pred EEEeCCC
Q 000860 881 VIYGGKL 887 (1250)
Q Consensus 881 ~~~~g~~ 887 (1250)
+++.|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14266 223 IIESGLT 229 (250)
T ss_pred EEEeCCH
Confidence 9888875
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=317.69 Aligned_cols=218 Identities=19% Similarity=0.263 Sum_probs=177.4
Q ss_pred eeEEEEeEEEEEeCCcc----ccc--ccc-cccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEE
Q 000860 648 LTMTFHNISYYVDTPQA----MRS--KGI-HEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGD 720 (1250)
Q Consensus 648 ~~l~~~~l~~~~~~~~~----~~~--~~~-~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~ 720 (1250)
+.++++|+++.+..... .+. .++ ....+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 36788999877765311 110 011 2245679999999999999999999999999999999999876 35799
Q ss_pred EEECCccCCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000860 721 IKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSF 800 (1250)
Q Consensus 721 i~~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~ 800 (1250)
|.++|. +++++|+..+.+.+|+.||+.+..... ..+.++..+.++++++.+++.+..+..++
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVK----- 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----
Confidence 999985 356777777778899999998765432 23344555667888889999887777665
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CE
Confidence 49999999999999999999999999999999999999999999998777999999999974 56778999999985 78
Q ss_pred EEEeCCC
Q 000860 881 VIYGGKL 887 (1250)
Q Consensus 881 ~~~~g~~ 887 (1250)
++..|+.
T Consensus 221 i~~~g~~ 227 (264)
T PRK13546 221 LKDYGEL 227 (264)
T ss_pred EEEeCCH
Confidence 8888875
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=309.74 Aligned_cols=194 Identities=22% Similarity=0.316 Sum_probs=164.1
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
+.++|+++.+. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccc
Confidence 67889998763 2458999999999999999999999999999999999876 35899999998764
Q ss_pred c--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 730 Q--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 730 ~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
. ..+++.++|++|+..+++.+||+|++.+..... .. ...++++++.+++.+..++.++ .||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS------PG--AVGITELCRLFSLEHLIDYPCG-----LLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC------cc--hHHHHHHHHHcCCchhhhCChh-----hcCHHHH
Confidence 3 335678999999988888999999998764211 11 2357889999999877676665 4999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhccee
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELL 873 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~ 873 (1250)
||++|||+|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ....+|..+
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 9999999999999999999999999999999999999998777999999999974 445666544
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=332.19 Aligned_cols=229 Identities=26% Similarity=0.394 Sum_probs=196.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++++++ ..++|+||||++++||++||+|.||||||||+|+|+|..+ +.+|+|.+||.+.
T Consensus 8 ll~~~~i~K~Fg-------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSFG-------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEcC-------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEc
Confidence 578999999874 3579999999999999999999999999999999999876 4689999999986
Q ss_pred Cc----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCC
Q 000860 729 EQ----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLP-KEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 729 ~~----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lS 803 (1250)
.. .....-|+.|.||..+.|++||.||+.++...+.+ .-.+.++.+++..++++.+++....++.+++ ||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~-----Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGD-----LS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhh-----CC
Confidence 43 23345689999999999999999999887654432 2356677788899999999996557888876 99
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
+||||.|.|||||..+++||+||||||.|+......+.+.+++++++|.+||+++|... |+++.|||+.||.+ |+.+-
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEee
Confidence 99999999999999999999999999999999999999999999999999999999985 89999999999986 78888
Q ss_pred eCCC-C-ccchhHHHHhh
Q 000860 884 GGKL-G-VHSQIMIDYFQ 899 (1250)
Q Consensus 884 ~g~~-~-~~~~~~~~yf~ 899 (1250)
.++. . ...++++...-
T Consensus 226 ~~~~~~~~~~~~lv~~Mv 243 (500)
T COG1129 226 TRPTAAETSEDELVRLMV 243 (500)
T ss_pred ecccccCCCHHHHHHHhh
Confidence 8873 3 33345555553
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=318.63 Aligned_cols=219 Identities=24% Similarity=0.315 Sum_probs=172.0
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++ ++++|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.++.
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 67899998773 23589999999999999999999999999999999997421145899999998764
Q ss_pred cc---c-ccceEEEEcCCCCCCCCCCHHHHHHHHH-hcCCC--C-CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000860 730 QS---T-FARISGYVEQEDVHSPQVTIEESLWFSA-NLRLP--K-EISKDQRHEFVEEVMSLVELD-SLRHALVGSPGSF 800 (1250)
Q Consensus 730 ~~---~-~~~~~~yv~q~~~~~~~ltv~e~l~~~~-~l~~~--~-~~~~~~~~~~v~~~l~~l~l~-~~~~~~v~~~~~~ 800 (1250)
.. . .++.++|++|++.+++.+|+.+++.+.. +++.. . .....+..++++++++.+++. +..++.+. +
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----C
Confidence 31 1 2346899999998888888777665432 11110 0 011223356678889999985 44454442 2
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHh-hcceeeeecCc
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEA-FDELLLMKRGG 879 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~v~~l~~gg 879 (1250)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||+++|++. .+... +|++++|.+ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-C
Confidence 59999999999999999999999999999999999999999999999877899999999975 34444 799999975 7
Q ss_pred EEEEeCCC
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 88898885
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=289.91 Aligned_cols=230 Identities=24% Similarity=0.312 Sum_probs=195.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++||..++.. ++.||++||++|++||+.+||||||||||||.++|+|.......+|+|.++|.++
T Consensus 3 ~L~I~dLhv~v~~------------~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI 70 (251)
T COG0396 3 MLEIKDLHVEVEG------------KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDI 70 (251)
T ss_pred eeEEeeeEEEecC------------chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccc
Confidence 5899999988742 2579999999999999999999999999999999999887777899999999987
Q ss_pred Cc----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcCC
Q 000860 729 EQ----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-LRHALVGSPGSFGLS 803 (1250)
Q Consensus 729 ~~----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~v~~~~~~~lS 803 (1250)
.. ...|.-+..-+|.|.-+|..|+.+.|..+.+.+........+..+.+++.++.+++.. ..++.+.. |+|
T Consensus 71 ~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~----GFS 146 (251)
T COG0396 71 LELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE----GFS 146 (251)
T ss_pred ccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC----CcC
Confidence 54 2345567788999999999999999998877643221112345667888999999987 56666653 799
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhh--cceeeeecCcEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAF--DELLLMKRGGRV 881 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~--d~v~~l~~gg~~ 881 (1250)
||||||.-|+..++.+|++.+||||-||||..+-+.|.+.++++++.|++++++||.. ++.... |++.+|.+ |++
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~-GrI 223 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYD-GRI 223 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999999999999999984 577766 99999996 799
Q ss_pred EEeCCCCccchhHHHHhhhCC
Q 000860 882 IYGGKLGVHSQIMIDYFQGLD 902 (1250)
Q Consensus 882 ~~~g~~~~~~~~~~~yf~~~~ 902 (1250)
+..|.+ ++.++.+.-|
T Consensus 224 v~sG~~-----el~~~le~~g 239 (251)
T COG0396 224 VKSGDP-----ELAEELEEKG 239 (251)
T ss_pred EecCCH-----HHHHHHHHhc
Confidence 998885 5777777765
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=294.34 Aligned_cols=216 Identities=24% Similarity=0.395 Sum_probs=186.7
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|++++|. ++.+|+++|+.|++|.+++++|||||||||||.++++..+ ..+|+|.++|.++.
T Consensus 2 I~i~nv~K~y~-------------~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~ 66 (252)
T COG4604 2 ITIENVSKSYG-------------TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELT 66 (252)
T ss_pred eeehhhhHhhC-------------CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecc
Confidence 46677877663 5679999999999999999999999999999999998765 45899999999865
Q ss_pred c---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000860 730 Q---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQ 806 (1250)
Q Consensus 730 ~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGe 806 (1250)
. ..+.+.++.+-|+......+||+|-+.|+.... ..+...++.+..++++++.++|++..|+.... |||||
T Consensus 67 ~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryLd~-----LSGGQ 140 (252)
T COG4604 67 STPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYLDE-----LSGGQ 140 (252)
T ss_pred cCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhHHh-----cccch
Confidence 3 456677888999988888999999999874322 12233456678899999999999999998864 99999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 807 rqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
|||.-||+.++.+.+.++||||.++||...+..+|+.||+++++ |+|||++.||.+. .-...|.|+-|.+ |+++..|
T Consensus 141 rQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G 218 (252)
T COG4604 141 RQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQG 218 (252)
T ss_pred hhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecC
Confidence 99999999999999999999999999999999999999999876 9999999999874 4567899999985 8999999
Q ss_pred CCC
Q 000860 886 KLG 888 (1250)
Q Consensus 886 ~~~ 888 (1250)
+++
T Consensus 219 ~~~ 221 (252)
T COG4604 219 SPD 221 (252)
T ss_pred CHH
Confidence 985
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=322.46 Aligned_cols=209 Identities=26% Similarity=0.390 Sum_probs=165.0
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++. .++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhh
Confidence 57888887632 12368999999999999999999999999999999999876 358999999987532
Q ss_pred ---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHH-----HHHHHHHHc--CCcccccccccCCCCC
Q 000860 731 ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHE-----FVEEVMSLV--ELDSLRHALVGSPGSF 800 (1250)
Q Consensus 731 ---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--~l~~~~~~~v~~~~~~ 800 (1250)
...++.++|++|++.+++ .||+||+.+.... ....+..+ .+++.++.+ ++.+..+..+ .
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGERG-----V 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCC-----C
Confidence 234567999999988876 6999999765321 11111111 234444444 4554444443 3
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++. +++|||+++|++. ++ ..+|++++|.+ |+
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~ 213 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLED-GK 213 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEecC-Ce
Confidence 599999999999999999999999999999999999999999999986 4899999999985 45 45999999986 68
Q ss_pred EEEeCCC
Q 000860 881 VIYGGKL 887 (1250)
Q Consensus 881 ~~~~g~~ 887 (1250)
++..|+.
T Consensus 214 i~~~~~~ 220 (234)
T cd03251 214 IVERGTH 220 (234)
T ss_pred EeeeCCH
Confidence 8887764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=319.89 Aligned_cols=214 Identities=25% Similarity=0.309 Sum_probs=174.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 725 (1250)
.++++|+++.++ ++++|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 16 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g 82 (265)
T PRK14252 16 KSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHP 82 (265)
T ss_pred eEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcC
Confidence 589999998874 235899999999999999999999999999999999976431 2589999999
Q ss_pred ccCC-------cccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHcCCc----cccccc
Q 000860 726 YPKE-------QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEIS-KDQRHEFVEEVMSLVELD----SLRHAL 793 (1250)
Q Consensus 726 ~~~~-------~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~-~~~~~~~v~~~l~~l~l~----~~~~~~ 793 (1250)
.+.. ...+++.++|++|++.+++. ||+||+.+..... ... ....++.++++++.+++. +..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (265)
T PRK14252 83 DNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLGDL 158 (265)
T ss_pred ccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHhCC
Confidence 7642 12346679999999988876 9999998765432 111 222345677888888774 223343
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhccee
Q 000860 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELL 873 (1250)
Q Consensus 794 v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~ 873 (1250)
+ ..||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|+++
T Consensus 159 ~-----~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~ 231 (265)
T PRK14252 159 A-----FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTA 231 (265)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEE
Confidence 3 35999999999999999999999999999999999999999999999865 689999999974 5778899999
Q ss_pred eeecCcEEEEeCCC
Q 000860 874 LMKRGGRVIYGGKL 887 (1250)
Q Consensus 874 ~l~~gg~~~~~g~~ 887 (1250)
+|++ |+++..|+.
T Consensus 232 ~l~~-G~i~~~g~~ 244 (265)
T PRK14252 232 YMYM-GELIEFGAT 244 (265)
T ss_pred EEEC-CEEEEeCCH
Confidence 9985 788888875
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=323.47 Aligned_cols=206 Identities=31% Similarity=0.440 Sum_probs=161.9
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++.. +++++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~i~~l~~~~~~~----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPSR----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCCC----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhh
Confidence 578888876421 12468999999999999999999999999999999999865 358999999987532
Q ss_pred ---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-----------cccccccccC
Q 000860 731 ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL-----------DSLRHALVGS 796 (1250)
Q Consensus 731 ---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l-----------~~~~~~~v~~ 796 (1250)
...++.++|++|++.+++ .||+|++.+.... ...++ .++.++..++ ....+..+
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 137 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPD-----ATDEE----VEEAAKKANIHDFIMSLPDGYDTLVGERG-- 137 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCC-----CCHHH----HHHHHHHcChHHHHHhhccccceeeccCC--
Confidence 233567999999988776 6999999764221 11111 2222333333 22222222
Q ss_pred CCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 797 ~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++ ..+|++++|+
T Consensus 138 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~ 211 (238)
T cd03249 138 ---SQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQ 211 (238)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEE
Confidence 4699999999999999999999999999999999999999999999987 7899999999975 34 4899999998
Q ss_pred cCcEEEEeCCC
Q 000860 877 RGGRVIYGGKL 887 (1250)
Q Consensus 877 ~gg~~~~~g~~ 887 (1250)
+ |++++.|+.
T Consensus 212 ~-G~i~~~~~~ 221 (238)
T cd03249 212 N-GQVVEQGTH 221 (238)
T ss_pred C-CEEEEeCCH
Confidence 6 788888874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=319.67 Aligned_cols=197 Identities=25% Similarity=0.374 Sum_probs=168.8
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCCCCHH
Q 000860 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFARISGYVEQEDVHSPQVTIE 753 (1250)
Q Consensus 677 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~q~~~~~~~ltv~ 753 (1250)
+|+|+|+++++||+++|+||||||||||+++|+|..+ .+|+|.++|.++.. ..+++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 6999999999999999999999999999999999764 27999999987643 23345689999998888889999
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhh-------CCcEEEEe
Q 000860 754 ESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVA-------NPSIIFMD 826 (1250)
Q Consensus 754 e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~-------~p~il~lD 826 (1250)
||+.+.... ....++..++++++++.++|.+..++.++ .||||||||++||++|+. +|++++||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVN-----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999876321 12233445678899999999887777665 499999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 827 EPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 827 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
|||+|||+.++..+.+.|++++++|+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 217 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRR 217 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999877999999999975 57789999999985 788888875
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=353.87 Aligned_cols=206 Identities=26% Similarity=0.349 Sum_probs=174.4
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc----ccccceEEEEcCCCCCCCCC
Q 000860 675 LQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ----STFARISGYVEQEDVHSPQV 750 (1250)
Q Consensus 675 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~----~~~~~~~~yv~q~~~~~~~l 750 (1250)
+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 468999999999999999999999999999999999876 358999999987642 12356799999999888999
Q ss_pred CHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000860 751 TIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTS 830 (1250)
Q Consensus 751 tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTs 830 (1250)
||+||+.+..........+.++..++++++++.+++.+..++.++. |||||||||+|||+|+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVAT-----LSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 9999998753211010113344456788999999998877777754 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCCCc
Q 000860 831 GLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGV 889 (1250)
Q Consensus 831 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~ 889 (1250)
|||+.+...+.+.|+++++.|+|||+++|++. ++...||++++|++ |+++..|+...
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 99999999999999999878999999999985 57788999999985 79999888654
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=316.88 Aligned_cols=210 Identities=26% Similarity=0.440 Sum_probs=168.7
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.+.. .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~ 68 (220)
T cd03245 2 RIEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDI 68 (220)
T ss_pred eEEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEh
Confidence 3678899887632 12468999999999999999999999999999999999865 3579999999875
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccccccccc------CCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVG------SPGS 799 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~------~~~~ 799 (1250)
.. ...++.++|++|++.+++ .||.|++.+... ... .+.+.++++.+++.+..+..+. ....
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 138 (220)
T cd03245 69 RQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERG 138 (220)
T ss_pred HHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCC
Confidence 32 234567999999998776 699999876421 111 2345678888888776665431 1112
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||+++|++. . .+.+|++++|.+ |
T Consensus 139 ~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~-~~~~d~v~~l~~-g 214 (220)
T cd03245 139 RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-L-LDLVDRIIVMDS-G 214 (220)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-H-HHhCCEEEEEeC-C
Confidence 469999999999999999999999999999999999999999999998764 89999999985 3 479999999986 6
Q ss_pred EEEEeC
Q 000860 880 RVIYGG 885 (1250)
Q Consensus 880 ~~~~~g 885 (1250)
++++.|
T Consensus 215 ~i~~~~ 220 (220)
T cd03245 215 RIVADG 220 (220)
T ss_pred eEeecC
Confidence 776653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=369.46 Aligned_cols=211 Identities=27% Similarity=0.467 Sum_probs=177.8
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++++|+. .++++|+|+|++|+|||.+||+|+||||||||+|+|+|..+ +.+|+|.+||.++
T Consensus 463 ~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~l 529 (694)
T TIGR03375 463 EIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ--PTEGSVLLDGVDI 529 (694)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEh
Confidence 6899999999853 23469999999999999999999999999999999999876 4579999999986
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~v~~~~ 798 (1250)
++ ..+|+.++||+|++.+++ .|++||+.++. | +.++++ +.++++..++.+ -.||.+|+.+
T Consensus 530 ~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~----~-~~~~~~----i~~a~~~~~l~~~i~~lp~gl~T~i~e~G 599 (694)
T TIGR03375 530 RQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA----P-YADDEE----ILRAAELAGVTEFVRRHPDGLDMQIGERG 599 (694)
T ss_pred hhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC----C-CCCHHH----HHHHHHHcChHHHHHhCcccccceecCCC
Confidence 54 467889999999999886 59999998652 1 233333 455566555543 4577777644
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
.+||||||||++|||||+++|+|++||||||+||+.++..+++.|+++. +++|+|+++|+++ ..+.+|+|++|++
T Consensus 600 -~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~- 674 (694)
T TIGR03375 600 -RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN- 674 (694)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC-
Confidence 5799999999999999999999999999999999999999999999885 4899999999984 5689999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 675 G~i~e~G~~ 683 (694)
T TIGR03375 675 GRIVADGPK 683 (694)
T ss_pred CEEEeeCCH
Confidence 899999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=314.28 Aligned_cols=210 Identities=24% Similarity=0.292 Sum_probs=168.0
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEEC--Cc-
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKIS--GY- 726 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~--g~- 726 (1250)
++++|+++.++.... .+.++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCc
Confidence 678999988753110 0012469999999999999999999999999999999999866 357999998 42
Q ss_pred -cCCc---cc----ccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCC
Q 000860 727 -PKEQ---ST----FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL-RHALVGSP 797 (1250)
Q Consensus 727 -~~~~---~~----~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~v~~~ 797 (1250)
++.. .. .++.++|++|++.+++.+||+|++.+..... ....++..+++.++++.+++.+. .+..+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 148 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPPA-- 148 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCcc--
Confidence 3221 11 2346899999999999999999998764322 22334445678889999999763 455543
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeee
Q 000860 798 GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 798 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+...+|+++.+.
T Consensus 149 ---~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 149 ---TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred ---cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 59999999999999999999999999999999999999999999999777999999999963 4556899998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=287.92 Aligned_cols=185 Identities=26% Similarity=0.376 Sum_probs=158.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc------cccceEEeeccccccCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~ 74 (1250)
++.|+||||||||||||+|.+...|+ +|+|.++|+++... ..||+||.|.|+.-+++..||.||+.|+.+.
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v 106 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV 106 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc
Confidence 46799999999999999999999875 99999999998543 2589999999999999999999999999887
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 154 (1250)
.+.+.+. .++++.++|+..||.+..+... .+|||||||||
T Consensus 107 ~G~~~~~-----------------------------------i~~rV~~~L~~VgL~~k~~~lP-----~~LSGGEQQRv 146 (223)
T COG2884 107 IGKPPRE-----------------------------------IRRRVSEVLDLVGLKHKARALP-----SQLSGGEQQRV 146 (223)
T ss_pred cCCCHHH-----------------------------------HHHHHHHHHHHhccchhhhcCc-----cccCchHHHHH
Confidence 6543221 1234788999999999877664 45999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecC
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGP 230 (1250)
Q Consensus 155 ~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~ 230 (1250)
+||||++.+|++||-||||-+|||..+.+|++.+.++.+ .|+||++++ |+..-+..+-.|++.|++|+++.+..
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~AT-Hd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMAT-HDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEe-ccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999999976 589999885 44555556778999999999987654
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=336.00 Aligned_cols=191 Identities=27% Similarity=0.391 Sum_probs=163.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc-ccceEEeeccccccCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
+++|+|||||||||||++|+|+.+|+ +|+|.++|.++.... .++.++||+|+..+++++||+||+.|+.+.++...
T Consensus 32 ~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~ 108 (356)
T PRK11650 32 FIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPK 108 (356)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCH
Confidence 47999999999999999999999864 999999999885432 35789999999999999999999999865332110
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
. + .+.+++++++.+||.+..+..+.+ |||||||||+||||
T Consensus 109 ~-----------~------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~QRvalARA 148 (356)
T PRK11650 109 A-----------E------------------------IEERVAEAARILELEPLLDRKPRE-----LSGGQRQRVAMGRA 148 (356)
T ss_pred H-----------H------------------------HHHHHHHHHHHcCChhHhhCChhh-----CCHHHHHHHHHHHH
Confidence 0 0 011367889999999888877654 99999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|+.+|++||||||||+||+.++.++.+.|+++.++.+.|+|+++ |+..++..++|+|++|++|+++..|+++++.
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vT-Hd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVT-HDQVEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999999999999999999998876688888774 5578899999999999999999999999874
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=333.56 Aligned_cols=191 Identities=25% Similarity=0.349 Sum_probs=162.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc------cccceEEeeccccccCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~ 74 (1250)
+++|+||||||||||+++|+|+.+|+ +|+|.++|.++... ..++.++|++|+..+++..||+||+.|+...
T Consensus 33 i~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~ 109 (343)
T TIGR02314 33 IYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (343)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHH
Confidence 47999999999999999999999865 99999999988543 1366899999999999999999999987643
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 154 (1250)
.+.... + .++++.++++.+||.+..|..++. |||||||||
T Consensus 110 ~~~~~~-----------~------------------------~~~~v~e~l~~vgL~~~~~~~~~~-----LSgGqkQRV 149 (343)
T TIGR02314 110 DNTPKD-----------E------------------------IKRKVTELLALVGLGDKHDSYPSN-----LSGGQKQRV 149 (343)
T ss_pred cCCCHH-----------H------------------------HHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHH
Confidence 321100 0 012367789999999888876654 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhH
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 155 ~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~ 234 (1250)
+|||||+.+|++||||||||+||+.++..+++.|+++.++.+.|+|+++ |+.+.+.++||+|++|++|++++.|+++++
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliT-H~~~~v~~~~d~v~vl~~G~iv~~g~~~~v 228 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLIT-HEMDVVKRICDCVAVISNGELIEQGTVSEI 228 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999876688888874 557788889999999999999999999887
Q ss_pred H
Q 000860 235 L 235 (1250)
Q Consensus 235 ~ 235 (1250)
.
T Consensus 229 ~ 229 (343)
T TIGR02314 229 F 229 (343)
T ss_pred H
Confidence 4
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=352.28 Aligned_cols=212 Identities=31% Similarity=0.450 Sum_probs=176.4
Q ss_pred eeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCcc
Q 000860 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 727 (1250)
Q Consensus 648 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 727 (1250)
..++++|+++.|+. .++.+|+|+|++++|||.+||+|+||||||||+|+|+|..+ +.+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~--p~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT--PQHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEe
Confidence 36899999998852 23468999999999999999999999999999999999876 357999999998
Q ss_pred CCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000860 728 KEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSP 797 (1250)
Q Consensus 728 ~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~v~~~ 797 (1250)
+++ ..+|+.++||+|++.+++ .|++||+.++. | +.+++ .+.++++..++.+ -.|+.+++.
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN----P-GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC----C-CCCHH----HHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 654 457888999999998885 59999997642 1 23333 3445555555443 356777764
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeec
Q 000860 798 GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 798 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ....+|++++|++
T Consensus 591 -g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~ 666 (694)
T TIGR01846 591 -GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK 666 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC
Confidence 35799999999999999999999999999999999999999999999884 5899999999985 4577999999985
Q ss_pred CcEEEEeCCC
Q 000860 878 GGRVIYGGKL 887 (1250)
Q Consensus 878 gg~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 667 -G~i~~~g~~ 675 (694)
T TIGR01846 667 -GQIAESGRH 675 (694)
T ss_pred -CEEEEeCCH
Confidence 799999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=370.93 Aligned_cols=210 Identities=24% Similarity=0.401 Sum_probs=176.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++|+|+. ++++|+|+|++|+|||.+||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 473 ~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i 538 (708)
T TIGR01193 473 DIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSL 538 (708)
T ss_pred cEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEH
Confidence 5899999999842 2468999999999999999999999999999999999876 4589999999986
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~v~~~~ 798 (1250)
++ ..+|+.+|||+|++.+++. |++||+.++.+ + +.+++ .+.++++..++.+ -.|+.+|+.+
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e~G 609 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK---E-NVSQD----EIWAACEIAEIKDDIENMPLGYQTELSEEG 609 (708)
T ss_pred HHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC---C-CCCHH----HHHHHHHHhCCHHHHHhcccccCcEecCCC
Confidence 43 5678899999999998864 99999987521 1 23333 3455566555543 3577787643
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++ +|+|+|+++|+++ +...+|+|++|++
T Consensus 610 -~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~- 683 (708)
T TIGR01193 610 -SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH- 683 (708)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999875 4899999999985 5688999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 684 G~i~~~G~~ 692 (708)
T TIGR01193 684 GKIIEQGSH 692 (708)
T ss_pred CEEEEECCH
Confidence 799999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=283.84 Aligned_cols=191 Identities=20% Similarity=0.325 Sum_probs=165.6
Q ss_pred cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc---ccccceEEEEcCCCCCCCC
Q 000860 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ---STFARISGYVEQEDVHSPQ 749 (1250)
Q Consensus 673 ~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~---~~~~~~~~yv~q~~~~~~~ 749 (1250)
...++|+++|+.+++||..+|.||||||||||+|+++...+ +.+|.+++.|.+++. ..+|++++||.|.+.+|+.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis--p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC--CCCceEEEcCccccccChHHHHHHHHHHHcCcccccc
Confidence 45679999999999999999999999999999999999877 468999999998754 5688999999999999975
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCC
Q 000860 750 VTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR-HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEP 828 (1250)
Q Consensus 750 ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~-~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEP 828 (1250)
||++|+.|...+|-.. + .+.+..+.++.+++.+.. ++.+. .||||||||++|+|-|..-|+||+||||
T Consensus 92 -tVeDNlifP~~~r~rr--~---dr~aa~~llar~~l~~~~L~k~it-----~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 92 -TVEDNLIFPWQIRNRR--P---DRAAALDLLARFALPDSILTKNIT-----ELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred -chhhccccchHHhccC--C---ChHHHHHHHHHcCCchhhhcchhh-----hccchHHHHHHHHHHhhcCCceEEecCc
Confidence 9999999988776322 1 234567788999987643 33343 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh-hCCCEEEEEecCCCHHHHHhhcceeeeec
Q 000860 829 TSGLDARAAAIVMRAVRNTV-DTGRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 829 TsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
||+||..+++.|.++|.++. .+.+.++-+||++. +....+||++-+..
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~ 209 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQP 209 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEecc
Confidence 99999999999999999986 66899999999985 56789999999976
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=334.57 Aligned_cols=191 Identities=25% Similarity=0.403 Sum_probs=163.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccc-cceEEeeccccccCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV-QRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
+++|+|||||||||||++|+|+.+|+ +|+|.++|.++..... ++.++||+|+..+|+++||+||+.|+.+.++...
T Consensus 34 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~ 110 (351)
T PRK11432 34 MVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK 110 (351)
T ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCH
Confidence 47999999999999999999999865 9999999998865433 5789999999999999999999999865432111
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
. + .+++++++++.+||.+..+..+. .|||||||||+||||
T Consensus 111 ~-----------~------------------------~~~~v~~~l~~~gl~~~~~r~~~-----~LSgGq~QRVaLARa 150 (351)
T PRK11432 111 E-----------E------------------------RKQRVKEALELVDLAGFEDRYVD-----QISGGQQQRVALARA 150 (351)
T ss_pred H-----------H------------------------HHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHH
Confidence 0 0 01236788999999887776665 499999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|+.+|++||||||||+||+.++.++.+.|+++.++.++|+|++ +|+..++.+++|+|++|++|+++..|+++++.
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v-THd~~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYV-THDQSEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-cCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999987668888776 56678899999999999999999999998874
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=334.06 Aligned_cols=192 Identities=20% Similarity=0.304 Sum_probs=163.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc---c----cceEEeeccccccCCCCCHHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ---V----QRASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~---~----~~~~~yv~Q~~~~~~~~TV~e~l~f~~~ 73 (1250)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++.... . ++.++||+|++.+++++||+||+.|+..
T Consensus 21 i~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~ 97 (363)
T TIGR01186 21 IFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPE 97 (363)
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999865 999999999986432 2 5689999999999999999999999865
Q ss_pred ccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchh
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKR 153 (1250)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqR 153 (1250)
..+.... + ..+++.++++.+||++..++.+++ ||||||||
T Consensus 98 ~~~~~~~-----------~------------------------~~~~~~~~l~~vgL~~~~~~~p~~-----LSGGq~QR 137 (363)
T TIGR01186 98 LLGWPEQ-----------E------------------------RKEKALELLKLVGLEEYEHRYPDE-----LSGGMQQR 137 (363)
T ss_pred HcCCCHH-----------H------------------------HHHHHHHHHHhcCCchhhhCChhh-----CCHHHHHH
Confidence 4321100 0 011367789999998877777654 99999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhh
Q 000860 154 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233 (1250)
Q Consensus 154 v~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~ 233 (1250)
|+|||||+.+|+||||||||++||+.++.++.+.|+++.++.++|+|+++ |+..++.+++|+|++|++|+++..|++++
T Consensus 138 V~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vT-Hd~~ea~~~~drI~vl~~G~iv~~g~~~e 216 (363)
T TIGR01186 138 VGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFIT-HDLDEAIRIGDRIVIMKAGEIVQVGTPDE 216 (363)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 99999999999999999999999999999999999998766688888874 56788899999999999999999999998
Q ss_pred HHH
Q 000860 234 VLE 236 (1250)
Q Consensus 234 ~~~ 236 (1250)
+..
T Consensus 217 i~~ 219 (363)
T TIGR01186 217 ILR 219 (363)
T ss_pred HHh
Confidence 753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=303.53 Aligned_cols=170 Identities=30% Similarity=0.430 Sum_probs=149.2
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++ ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5788887763 2358999999999999999999999999999999999866 358999999987542
Q ss_pred -----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000860 731 -----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 731 -----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgG 805 (1250)
..+++.++|++|++.+++.+|++|++.+. ||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 23467899999999888889999976431 8999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++|
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877 899999999974 566689999999863
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=318.74 Aligned_cols=211 Identities=27% Similarity=0.406 Sum_probs=165.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeH
Confidence 4788999987631 2358999999999999999999999999999999999876 3579999999875
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccc------cCCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV------GSPGS 799 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v------~~~~~ 799 (1250)
.. ..+++.++|++|++.+++. ||+||+.+... .... +.+++.++.+++.+..+... -....
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 42 2346679999999887775 99999976521 1111 22344444444443332211 01113
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
..||||||||++||++|+.+|++++|||||+|||+.++..+++.|+++. +|+|||+++|++. ++ ..+|++++|++ |
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-G 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-C
Confidence 4699999999999999999999999999999999999999999999985 5899999999985 34 56999999985 7
Q ss_pred EEEEeCCC
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 88887764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=333.66 Aligned_cols=192 Identities=24% Similarity=0.406 Sum_probs=164.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc-ccceEEeeccccccCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.... .++.++||+|+..+||++||+||+.|+.+.++...
T Consensus 32 ~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~ 108 (353)
T TIGR03265 32 FVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGR 108 (353)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCH
Confidence 47999999999999999999999865 999999999886432 35789999999999999999999999865332110
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
.+ .+.+++++++.+||.+..|..+. +|||||||||+||||
T Consensus 109 -----------~~------------------------~~~~~~~~l~~l~L~~~~~~~~~-----~LSgGq~QRvaLARa 148 (353)
T TIGR03265 109 -----------AE------------------------VAERVAELLDLVGLPGSERKYPG-----QLSGGQQQRVALARA 148 (353)
T ss_pred -----------HH------------------------HHHHHHHHHHHcCCCchhhCChh-----hCCHHHHHHHHHHHH
Confidence 00 01236789999999988887665 499999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
|+.+|+++|||||||+||+.++.++.+.|+++.++.+.|+|+++ |+..++..++|+|++|++|+++..|+++++.+
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vT-Hd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVT-HDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEc-CCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999876688888774 55788999999999999999999999988753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=292.63 Aligned_cols=193 Identities=22% Similarity=0.381 Sum_probs=164.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccc----cceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV----QRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++++|||||||||.+.++.|+.+|+ +|+|.+||.+++...+ +.-+||+||+...|..+||+|||....+.+.
T Consensus 32 iVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~ 108 (243)
T COG1137 32 IVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIRE 108 (243)
T ss_pred EEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhh
Confidence 57899999999999999999999975 9999999999976533 3458999999999999999999987665432
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
.... ..+ .+.+.+.+|+.|+|.|.++.+-.+ ||||||+|+.|
T Consensus 109 ~d~~---------~~~------------------------~~~~l~~LL~ef~i~hlr~~~a~s-----LSGGERRR~EI 150 (243)
T COG1137 109 KDLK---------KAE------------------------RKEELDALLEEFHITHLRDSKAYS-----LSGGERRRVEI 150 (243)
T ss_pred cchh---------HHH------------------------HHHHHHHHHHHhchHHHhcCcccc-----cccchHHHHHH
Confidence 1100 000 012367899999999999987554 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||||+.+|+.++||||++|+||.+..+|.+.++.+.. .|..|+++ .|+..++...+||.+++.+|++..+|+++++.+
T Consensus 151 ARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLIT-DHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 151 ARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLIT-DHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred HHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEc-cccHHHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 9999999999999999999999999999999999976 47777776 677889999999999999999999999999864
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=295.86 Aligned_cols=191 Identities=25% Similarity=0.398 Sum_probs=158.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc----ccceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ----VQRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||+||||||++|+|..++. +|+|.++|+|++... .+.-++||||....|+.+||+|||..++..+.
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~ 107 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARR 107 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhccc
Confidence 58999999999999999999999864 999999999997543 35679999999999999999999998764432
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhC-CccccccccCCCccccCccccchhhH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLG-LDLCSDTVVGSEMLRGVSGGQKKRVT 155 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqkqRv~ 155 (1250)
..... +...+++.+.|- |.+.++.+-|. |||||||-++
T Consensus 108 ~~~~~------------------------------------~~~~e~v~~lFP~Lker~~~~aG~-----LSGGEQQMLA 146 (237)
T COG0410 108 DKEAQ------------------------------------ERDLEEVYELFPRLKERRNQRAGT-----LSGGEQQMLA 146 (237)
T ss_pred ccccc------------------------------------cccHHHHHHHChhHHHHhcCcccC-----CChHHHHHHH
Confidence 10000 001334444443 44555666665 9999999999
Q ss_pred HHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 156 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 156 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|||||+++|++|+|||||.||-|.-..+|.+.++++.++.+.||+++ .|+...+.+++||.++|.+|+++++|+.+++.
T Consensus 147 iaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLV-EQn~~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 147 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLV-EQNARFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred HHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEE-eccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 99999999999999999999999999999999999987656666665 89999999999999999999999999999985
Q ss_pred H
Q 000860 236 E 236 (1250)
Q Consensus 236 ~ 236 (1250)
+
T Consensus 226 ~ 226 (237)
T COG0410 226 A 226 (237)
T ss_pred c
Confidence 4
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=322.48 Aligned_cols=221 Identities=25% Similarity=0.337 Sum_probs=174.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC---CeeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~---~~~~G~i~~~g 725 (1250)
.+.++|+++.+. ++.+|+++|++|++||+++|+|||||||||||++|+|..++ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 589999998873 23589999999999999999999999999999999997542 13589999999
Q ss_pred ccCCc-----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCC---------CCC-HHHHHHHHHHHHHHcCCcccc
Q 000860 726 YPKEQ-----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPK---------EIS-KDQRHEFVEEVMSLVELDSLR 790 (1250)
Q Consensus 726 ~~~~~-----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~---------~~~-~~~~~~~v~~~l~~l~l~~~~ 790 (1250)
.++.. ...++.++|++|++.+++ .||+||+.+........ ... .+..++.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87542 134567999999988887 59999999865421100 011 123356688899999885322
Q ss_pred cccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhc
Q 000860 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFD 870 (1250)
Q Consensus 791 ~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 870 (1250)
+.... .....||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|
T Consensus 191 ~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 11111 12246999999999999999999999999999999999999999999999876 589999999985 5678899
Q ss_pred cee-eeecCcEEEEeCCC
Q 000860 871 ELL-LMKRGGRVIYGGKL 887 (1250)
Q Consensus 871 ~v~-~l~~gg~~~~~g~~ 887 (1250)
+++ +|.+ |+++..|+.
T Consensus 268 ~i~~~l~~-G~i~~~g~~ 284 (305)
T PRK14264 268 QTAVFLTG-GELVEYDDT 284 (305)
T ss_pred EEEEEecC-CEEEEeCCH
Confidence 975 6664 799988875
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=327.73 Aligned_cols=191 Identities=28% Similarity=0.381 Sum_probs=163.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc--cccceEEeeccccccCCCCCHHHHHHHHHHccCCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF--QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~ 78 (1250)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.+|||+|++.+++.+||+||+.|.++..+..
T Consensus 35 i~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 111 (306)
T PRK13537 35 CFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS 111 (306)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999865 99999999987532 34678999999999999999999999865543211
Q ss_pred cchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHH
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~ 158 (1250)
.. + ...+++++++.+||.+..++.++. ||||||||++||+
T Consensus 112 ~~-----------~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~ 151 (306)
T PRK13537 112 AA-----------A------------------------ARALVPPLLEFAKLENKADAKVGE-----LSGGMKRRLTLAR 151 (306)
T ss_pred HH-----------H------------------------HHHHHHHHHHHcCCchHhcCchhh-----CCHHHHHHHHHHH
Confidence 10 0 011256788999999888888865 9999999999999
Q ss_pred HHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 159 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||+++|++|+|||||+|||+.++.++++.|+++.+ .|+|++++ +|+..++.++||+|++|++|++++.|+++++.+
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~-sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLT-THFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999865 47888887 456788899999999999999999999998864
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=350.35 Aligned_cols=215 Identities=23% Similarity=0.298 Sum_probs=177.0
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECC----
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG---- 725 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g---- 725 (1250)
++++|++++|. ++.+|+|+|+++++||+++|+|||||||||||++|+|..+..+.+|+|.++|
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~ 67 (520)
T TIGR03269 1 IEVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCE 67 (520)
T ss_pred CEEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccc
Confidence 36788888773 2468999999999999999999999999999999999741013579999872
Q ss_pred -------------------ccCC----------c---ccccceEEEEcCC-CCCCCCCCHHHHHHHHHhcCCCCCCCHHH
Q 000860 726 -------------------YPKE----------Q---STFARISGYVEQE-DVHSPQVTIEESLWFSANLRLPKEISKDQ 772 (1250)
Q Consensus 726 -------------------~~~~----------~---~~~~~~~~yv~q~-~~~~~~ltv~e~l~~~~~l~~~~~~~~~~ 772 (1250)
.++. . ..+++.++|++|+ +.+++.+||+|++.+..... ..+.++
T Consensus 68 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~ 144 (520)
T TIGR03269 68 KCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKE 144 (520)
T ss_pred cccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 2110 0 1235679999997 67888899999998865432 233445
Q ss_pred HHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CC
Q 000860 773 RHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TG 851 (1250)
Q Consensus 773 ~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g 851 (1250)
.+++++++++.+||.+..++.+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ .|
T Consensus 145 ~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g 219 (520)
T TIGR03269 145 AVGRAVDLIEMVQLSHRITHIARD-----LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG 219 (520)
T ss_pred HHHHHHHHHHHcCChhhhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 567889999999998887777654 999999999999999999999999999999999999999999999865 48
Q ss_pred CEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 852 RTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 852 ~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
+|||+++|++. .+.+.+|++++|++ |++++.|+.
T Consensus 220 ~tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 253 (520)
T TIGR03269 220 ISMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTP 253 (520)
T ss_pred cEEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCH
Confidence 99999999985 46678999999986 788888875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=330.05 Aligned_cols=208 Identities=20% Similarity=0.289 Sum_probs=172.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.+... ..+.+|+|+||++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~----------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDG----------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA 88 (549)
T ss_pred eeEEEEEEEecCCC----------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee
Confidence 47788887765321 12469999999999999999999999999999999999876 3589999999641
Q ss_pred CcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000860 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerq 808 (1250)
++.+...+.+.+||+|++.+..... ..+.++..++++++++.+++.+..++.++ .|||||||
T Consensus 89 ----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~-----~LSGGQrQ 150 (549)
T PRK13545 89 ----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVK-----TYSSGMKS 150 (549)
T ss_pred ----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcc-----cCCHHHHH
Confidence 1222344567789999998754332 23344555678889999999888777765 49999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCCC
Q 000860 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLG 888 (1250)
Q Consensus 809 r~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 888 (1250)
|++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++...||++++|.+ |++++.|+.+
T Consensus 151 RVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~ 228 (549)
T PRK13545 151 RLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999999999999998777999999999985 57788999999985 7888888763
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=304.87 Aligned_cols=184 Identities=24% Similarity=0.313 Sum_probs=153.6
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.+||.++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~ 67 (200)
T cd03217 1 LEIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT 67 (200)
T ss_pred CeEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECC
Confidence 35788888763 23589999999999999999999999999999999997421146899999998764
Q ss_pred cc---c-ccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000860 730 QS---T-FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 730 ~~---~-~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgG 805 (1250)
.. . .++.++|++|++.+++..|+++++. ... ..||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~~~-----~~LS~G 108 (200)
T cd03217 68 DLPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------YVN-----EGFSGG 108 (200)
T ss_pred cCCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------hcc-----ccCCHH
Confidence 31 1 2345999999998888888887650 000 249999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHH-hhcceeeeecCcEEEEe
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFE-AFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~-~~d~v~~l~~gg~~~~~ 884 (1250)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++.|+|||+++|++. .+.. .+|++++|++ |++...
T Consensus 109 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~-G~i~~~ 186 (200)
T cd03217 109 EKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYD-GRIVKS 186 (200)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999777899999999985 4545 6999999985 788888
Q ss_pred CCC
Q 000860 885 GKL 887 (1250)
Q Consensus 885 g~~ 887 (1250)
|+.
T Consensus 187 ~~~ 189 (200)
T cd03217 187 GDK 189 (200)
T ss_pred ccH
Confidence 854
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=314.28 Aligned_cols=198 Identities=26% Similarity=0.362 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--
Confidence 578999998873 2358999999999999999999999999999999999876 35799999872
Q ss_pred CcccccceEEEEcCCCCCCCC--CCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000860 729 EQSTFARISGYVEQEDVHSPQ--VTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQ 806 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~~~~~~--ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGe 806 (1250)
..++|++|++.+++. .|+++++.+. .... ++++.++++.+++.+..++.+. .|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAPMQ-----KLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCChh-----hCCHHH
Confidence 358999999877765 4777766431 1111 2346789999999888777665 499999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 807 rqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. + +++..|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeC
Confidence 99999999999999999999999999999999999999998765 899999999985 5778899999995 4 577777
Q ss_pred CC
Q 000860 886 KL 887 (1250)
Q Consensus 886 ~~ 887 (1250)
+.
T Consensus 203 ~~ 204 (251)
T PRK09544 203 TP 204 (251)
T ss_pred CH
Confidence 75
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=316.66 Aligned_cols=207 Identities=28% Similarity=0.398 Sum_probs=165.6
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++.. .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 78 (226)
T cd03248 11 IVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKPI 78 (226)
T ss_pred eEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCch
Confidence 58999999987431 12358999999999999999999999999999999999865 3579999999875
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCH---HHHHHHHHHHHHHc--CCcccccccccCCCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISK---DQRHEFVEEVMSLV--ELDSLRHALVGSPGSF 800 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~---~~~~~~v~~~l~~l--~l~~~~~~~v~~~~~~ 800 (1250)
.. ...++.++|++|++.+++ .||+||+.+..... .... ...+..+++.++.+ |+.+..+..+.
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~----- 149 (226)
T cd03248 79 SQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC---SFECVKEAAQKAHAHSFISELASGYDTEVGEKGS----- 149 (226)
T ss_pred HHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCC---CHHHHHHHHHHcCcHHHHHhccccccchhhcCCC-----
Confidence 32 234567999999988775 69999997653211 1111 11112356777777 67766555553
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++ ..+|++++|++ |+
T Consensus 150 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~-g~ 225 (226)
T cd03248 150 QLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQILVLDG-GR 225 (226)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEecC-Cc
Confidence 5999999999999999999999999999999999999999999999865 689999999985 45 56999999986 44
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=332.58 Aligned_cols=192 Identities=22% Similarity=0.353 Sum_probs=163.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCcee--eEEEECCeecCccc-ccceEEeeccccccCCCCCHHHHHHHHHHccCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKS--GSITYNGWELDEFQ-VQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~--G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~ 77 (1250)
+++|+|||||||||||++|+|+.+|+ + |+|.++|.++.... .++.++||+|+..+++++||+||+.|+.+.++.
T Consensus 33 ~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~ 109 (362)
T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM 109 (362)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999865 7 99999999875432 356799999999999999999999998654321
Q ss_pred CcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHH
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA 157 (1250)
... + .+.+++++++.+||.+..++.+++ |||||||||+||
T Consensus 110 ~~~-----------~------------------------~~~~v~~~l~~~gL~~~~~~~~~~-----LSgGq~QRvaLA 149 (362)
T TIGR03258 110 PKA-----------D------------------------IAERVADALKLVGLGDAAAHLPAQ-----LSGGMQQRIAIA 149 (362)
T ss_pred CHH-----------H------------------------HHHHHHHHHHhcCCCchhhCChhh-----CCHHHHHHHHHH
Confidence 100 0 011367889999999888877754 999999999999
Q ss_pred HHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhC-CCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQM-DATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 158 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~-~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
|||+.+|++|||||||||||+.++.++.+.|+++.++. |.|+|++ +|+..++..++|+|++|++|+++..|+++++.+
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~v-THd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCV-THDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988764 6787776 466788899999999999999999999998743
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=300.62 Aligned_cols=171 Identities=25% Similarity=0.425 Sum_probs=149.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.+ +|+++|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~-----------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 64 (182)
T cd03215 4 VLEVRGLSVKG-----------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPV 64 (182)
T ss_pred EEEEeccEEEe-----------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 47888887643 6999999999999999999999999999999999876 3579999999876
Q ss_pred Ccc----cccceEEEEcCCC---CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000860 729 EQS----TFARISGYVEQED---VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFG 801 (1250)
Q Consensus 729 ~~~----~~~~~~~yv~q~~---~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~ 801 (1250)
... ..++.++|++|++ .+++.+|++||+.+...
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------- 104 (182)
T cd03215 65 TRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------- 104 (182)
T ss_pred CccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------
Confidence 432 2456799999984 57888999999876421
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 802 lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++|+|+|+++|+++ ++.+.+|++++|++ |+
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~-G~ 181 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYE-GR 181 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecC-Cc
Confidence 8999999999999999999999999999999999999999999998777899999999974 57788999999986 44
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=353.86 Aligned_cols=212 Identities=26% Similarity=0.427 Sum_probs=173.7
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+. +++++|+|+|++++|||+++|+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 316 ~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~i 382 (544)
T TIGR01842 316 HLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADL 382 (544)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeh
Confidence 5899999998842 23468999999999999999999999999999999999876 4589999999886
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-------SLRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~v~~~~ 798 (1250)
.. ..+++.++||+|++.+++. |++||+.+.. .+.++++ +.++++..++. +-.|+.+|+.
T Consensus 383 ~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~l~~gl~t~~~~~- 451 (544)
T TIGR01842 383 KQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPEK----IIEAAKLAGVHELILRLPDGYDTVIGPG- 451 (544)
T ss_pred hhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHHH----HHHHHHHhChHHHHHhCccccccccCCC-
Confidence 43 3567889999999998875 9999997432 1233333 33333433332 2345666653
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
...||||||||++|||||+++|++++|||||||||+.++..+.+.|+++..+|+|+|+++|+++ ..+.+|++++|++
T Consensus 452 g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~- 528 (544)
T TIGR01842 452 GATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQD- 528 (544)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999998656899999999984 5678999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|++++.|+.
T Consensus 529 G~i~~~g~~ 537 (544)
T TIGR01842 529 GRIARFGER 537 (544)
T ss_pred CEEEeeCCH
Confidence 799998885
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=354.42 Aligned_cols=219 Identities=21% Similarity=0.280 Sum_probs=180.7
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|.... +..++|+||||++++||++||+||||||||||+++|+|..++ .+|+|.++|..+
T Consensus 12 ~l~v~~l~~~y~~~~---------~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p--~~G~i~~~g~~~ 80 (623)
T PRK10261 12 VLAVENLNIAFMQEQ---------QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ--AGGLVQCDKMLL 80 (623)
T ss_pred eEEEeceEEEecCCC---------CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCeEEEECCEEe
Confidence 589999999885311 134699999999999999999999999999999999998753 479999888532
Q ss_pred C-------------cc---cc-cceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-
Q 000860 729 E-------------QS---TF-ARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS- 788 (1250)
Q Consensus 729 ~-------------~~---~~-~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~- 788 (1250)
. .. .+ ++.+|||+|++ .++|.+||.|++.+...... ..+..+.+++++++++.+||.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 81 RRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred ccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCCh
Confidence 1 11 12 24689999997 67888999999998765421 2344556678899999999963
Q ss_pred --cccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHH
Q 000860 789 --LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEI 865 (1250)
Q Consensus 789 --~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~ 865 (1250)
..+..+. .|||||||||+||+||+.+|++|+|||||++||+.++..+.+.|++++++ |+|||+++|++. .+
T Consensus 159 ~~~~~~~~~-----~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~ 232 (623)
T PRK10261 159 QTILSRYPH-----QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VV 232 (623)
T ss_pred hhHHhCCCc-----cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HH
Confidence 3556554 49999999999999999999999999999999999999999999999755 899999999975 57
Q ss_pred HHhhcceeeeecCcEEEEeCCC
Q 000860 866 FEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 866 ~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
...+|+|++|++ |+++..|+.
T Consensus 233 ~~~adri~vl~~-G~i~~~g~~ 253 (623)
T PRK10261 233 AEIADRVLVMYQ-GEAVETGSV 253 (623)
T ss_pred HHhCCEEEEeeC-CeecccCCH
Confidence 789999999985 788888875
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=332.44 Aligned_cols=191 Identities=25% Similarity=0.367 Sum_probs=163.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc-ccceEEeeccccccCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
+++|+|||||||||||++|+|+.+|+ +|+|.++|.++.... .++.++||+|+..+||++||+||+.|+.+.++...
T Consensus 42 ~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~ 118 (375)
T PRK09452 42 FLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPA 118 (375)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCH
Confidence 47999999999999999999999865 999999999885432 35779999999999999999999999865332110
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
. + .+.+++++++.+||.+..+..+. +|||||||||+||||
T Consensus 119 ~-----------~------------------------~~~~~~~~l~~~~l~~~~~~~p~-----~LSgGq~QRVaLARa 158 (375)
T PRK09452 119 A-----------E------------------------ITPRVMEALRMVQLEEFAQRKPH-----QLSGGQQQRVAIARA 158 (375)
T ss_pred H-----------H------------------------HHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHHHHHHHH
Confidence 0 0 01136788999999988887765 499999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|+.+|++||||||||+||+.++.++.+.|+++.++.+.|+|++ +|+..++..++|+|++|++|+++..|+++++.
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~v-THd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFV-THDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999987668888876 46678899999999999999999999998874
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=311.55 Aligned_cols=209 Identities=26% Similarity=0.348 Sum_probs=166.6
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++. .++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 68 (221)
T cd03244 2 DIEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDI 68 (221)
T ss_pred cEEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEh
Confidence 3688999987742 12469999999999999999999999999999999999865 3579999999875
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHA-------LVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~v~~~~ 798 (1250)
.. ..+++.++|++|++.+++ .||+||+.+.. ... .+.+.+.++.+++.+..++ ..+ ..
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~-~~ 136 (221)
T cd03244 69 SKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYS----DEELWQALERVGLKEFVESLPGGLDTVVE-EG 136 (221)
T ss_pred HhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCC----HHHHHHHHHHhCcHHHHHhcccccccccc-cC
Confidence 42 245678999999988775 59999986421 111 1235566666776554332 111 12
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++ ..+|++++|++
T Consensus 137 ~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i~~l~~- 212 (221)
T cd03244 137 GENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TI-IDSDRILVLDK- 212 (221)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-hhCCEEEEEEC-
Confidence 356999999999999999999999999999999999999999999999864 689999999985 34 45999999985
Q ss_pred cEEEEeCC
Q 000860 879 GRVIYGGK 886 (1250)
Q Consensus 879 g~~~~~g~ 886 (1250)
|++++.|+
T Consensus 213 g~~~~~~~ 220 (221)
T cd03244 213 GRVVEFDS 220 (221)
T ss_pred CeEEecCC
Confidence 78887775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=347.89 Aligned_cols=221 Identities=22% Similarity=0.316 Sum_probs=180.8
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCC---eeEEEEEECC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 725 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~---~~~G~i~~~g 725 (1250)
.++++|+++.|+.. ...+.+|+|+||++++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQ---------QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCC---------CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 48899999987421 01246999999999999999999999999999999999976531 2589999999
Q ss_pred ccCCcc------ccc-ceEEEEcCCCC--CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccc---cccc
Q 000860 726 YPKEQS------TFA-RISGYVEQEDV--HSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL---RHAL 793 (1250)
Q Consensus 726 ~~~~~~------~~~-~~~~yv~q~~~--~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~---~~~~ 793 (1250)
.++... ..+ +.+||++|++. +.+.+|++|++.+..... ...+..+.+++++++++.+||.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 876431 122 46999999974 567789999987654321 123345566788999999999763 4666
Q ss_pred ccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcce
Q 000860 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDEL 872 (1250)
Q Consensus 794 v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v 872 (1250)
++ .|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. .+...+|++
T Consensus 154 ~~-----~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 PH-----QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred Cc-----ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 65 49999999999999999999999999999999999999999999999765 899999999985 567789999
Q ss_pred eeeecCcEEEEeCCC
Q 000860 873 LLMKRGGRVIYGGKL 887 (1250)
Q Consensus 873 ~~l~~gg~~~~~g~~ 887 (1250)
++|++ |++++.|+.
T Consensus 228 ~~l~~-G~i~~~g~~ 241 (529)
T PRK15134 228 AVMQN-GRCVEQNRA 241 (529)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 788888775
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=299.89 Aligned_cols=176 Identities=27% Similarity=0.490 Sum_probs=149.5
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++. .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 i~~~~~~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPE-----------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCC-----------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCEEHH
Confidence 367888887642 12358999999999999999999999999999999999865 35799999998653
Q ss_pred c--ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 730 Q--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 730 ~--~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
. ..+++.++|++|++.+++ .|++||+ + ..||||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~i-------------------------------------~-----~~LS~G~~ 104 (178)
T cd03247 68 DLEKALSSLISVLNQRPYLFD-TTLRNNL-------------------------------------G-----RRFSGGER 104 (178)
T ss_pred HHHHHHHhhEEEEccCCeeec-ccHHHhh-------------------------------------c-----ccCCHHHH
Confidence 2 234667999999987775 6998876 1 24999999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
||++|||+|+.+|++++|||||+|||+.++..+++.|+++. +++|||+++|++. ++ ..+|++++|++ |++++.|
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~-g~i~~~~ 178 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLEN-GKIIMQG 178 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999985 5899999999985 34 57999999985 7877654
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=316.27 Aligned_cols=208 Identities=28% Similarity=0.445 Sum_probs=162.1
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~ 67 (236)
T cd03253 2 EFENVTFAYDP------------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIRE 67 (236)
T ss_pred EEEEEEEEeCC------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhh
Confidence 57888877631 2358999999999999999999999999999999999875 458999999987542
Q ss_pred ---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCC
Q 000860 731 ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHA-------LVGSPGSF 800 (1250)
Q Consensus 731 ---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~v~~~~~~ 800 (1250)
..+++.++|++|++.+++ .||+||+.+... ..+..+ +.+.++..++.+..+. .... ..+
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~~ 136 (236)
T cd03253 68 VTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIVGE-RGL 136 (236)
T ss_pred CCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchhhc-CCC
Confidence 234567999999988775 699999977531 112221 2233333333322111 1111 134
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++++ |+|||+++|++. .+ ..+|++++|++ |+
T Consensus 137 ~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~~~l~~-g~ 212 (236)
T cd03253 137 KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKIIVLKD-GR 212 (236)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEEC-CE
Confidence 6999999999999999999999999999999999999999999999876 999999999985 34 55999999986 78
Q ss_pred EEEeCCC
Q 000860 881 VIYGGKL 887 (1250)
Q Consensus 881 ~~~~g~~ 887 (1250)
++..|+.
T Consensus 213 i~~~~~~ 219 (236)
T cd03253 213 IVERGTH 219 (236)
T ss_pred EEeeCCH
Confidence 8887764
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=297.43 Aligned_cols=190 Identities=27% Similarity=0.315 Sum_probs=160.1
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc----cccceEEeecccc--ccCCCCCHHHHHHHHHHcc
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF----QVQRASAYIGQTD--NHIAELTVRETLDFAARCQ 75 (1250)
Q Consensus 2 ~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~----~~~~~~~yv~Q~~--~~~~~~TV~e~l~f~~~~~ 75 (1250)
.+|+|+||||||||.++|+|+.+|. +|+|.++|.+.... ..++.+-+|+|++ .+-|..||++.|.-+.+..
T Consensus 36 lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~ 112 (252)
T COG1124 36 LGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH 112 (252)
T ss_pred EEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC
Confidence 6899999999999999999999875 99999999877543 3567899999996 7888999999997665443
Q ss_pred CCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhH
Q 000860 76 GANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVT 155 (1250)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ 155 (1250)
+.+.. ++++.++|+.+||++..-. +...+|||||||||+
T Consensus 113 ~~~~~-------------------------------------~~~i~~~L~~VgL~~~~l~----R~P~eLSGGQ~QRia 151 (252)
T COG1124 113 GLSKS-------------------------------------QQRIAELLDQVGLPPSFLD----RRPHELSGGQRQRIA 151 (252)
T ss_pred CccHH-------------------------------------HHHHHHHHHHcCCCHHHHh----cCchhcChhHHHHHH
Confidence 22110 1125678999999764322 234569999999999
Q ss_pred HHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 156 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 156 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|||||..+|++||||||||+||+..+.+|++.|.++.++++.|.+++ +|+..-+..+||||+||++|++++.++.+++.
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~I-sHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFI-SHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEE-eCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 99999999999999999999999999999999999998888888876 67788888999999999999999999999986
Q ss_pred H
Q 000860 236 E 236 (1250)
Q Consensus 236 ~ 236 (1250)
.
T Consensus 231 ~ 231 (252)
T COG1124 231 S 231 (252)
T ss_pred c
Confidence 4
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=301.52 Aligned_cols=190 Identities=25% Similarity=0.409 Sum_probs=167.8
Q ss_pred ceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc-------ccccceEEEEcCCCCCCCCCCH
Q 000860 680 NVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-------STFARISGYVEQEDVHSPQVTI 752 (1250)
Q Consensus 680 ~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~yv~q~~~~~~~ltv 752 (1250)
++++..+.-.++||-|+||||||||+|+|+|... +.+|.|.+||..... ...+|++|||+||..+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 6778877767999999999999999999999876 458999999975321 2357889999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCC
Q 000860 753 EESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 832 (1250)
Q Consensus 753 ~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgL 832 (1250)
+.||.|+..-- .....+++.+.||++|..++...+ |||||||||+|+|||+++|++|+||||.++|
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~~-----LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCCc-----cCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 99999985321 233468899999999999998865 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 833 DARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 833 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
|-....+++-.|.+++++ +..|+.++|.+. |+..++|+|++|++ |++...|+.
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~-GkV~A~g~~ 213 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLEN-GKVKASGPL 213 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecC-CeEEecCcH
Confidence 999999999999999876 789999999984 79999999999985 899999986
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=297.10 Aligned_cols=168 Identities=31% Similarity=0.496 Sum_probs=146.1
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++. .++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~ 68 (173)
T cd03246 2 EVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQ 68 (173)
T ss_pred EEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEccc
Confidence 57888887642 12458999999999999999999999999999999999866 357999999987643
Q ss_pred ---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 731 ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 731 ---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
..+++.++|++|++.+++ .||+||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~l---------------------------------------------LS~G~~ 102 (173)
T cd03246 69 WDPNELGDHVGYLPQDDELFS-GSIAENI---------------------------------------------LSGGQR 102 (173)
T ss_pred CCHHHHHhheEEECCCCcccc-CcHHHHC---------------------------------------------cCHHHH
Confidence 234667999999988777 4999875 899999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|++. .+ ..+|++++|++ |+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~ 172 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLED-GR 172 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEEC-CC
Confidence 9999999999999999999999999999999999999999777999999999974 34 68999999986 44
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=299.34 Aligned_cols=204 Identities=24% Similarity=0.351 Sum_probs=167.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccc----cceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV----QRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~----~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||||||||+|+|+|.++|+ +|+|.++|++++.... +.-++.-+|...+|+++||.||+..+...+.
T Consensus 32 i~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~ 108 (250)
T COG0411 32 IVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARL 108 (250)
T ss_pred EEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhh
Confidence 58999999999999999999999975 9999999999975543 4457888999999999999999998865432
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
.- .......+..+. ..+..+++.++|+.+||.+.+|++.|+ ||+|||||+.|
T Consensus 109 ~~----~~~l~~~~~~~~-------------------e~~~~e~A~~~Le~vgL~~~a~~~A~~-----LsyG~qR~LEI 160 (250)
T COG0411 109 GL----SGLLGRPRARKE-------------------EREARERARELLEFVGLGELADRPAGN-----LSYGQQRRLEI 160 (250)
T ss_pred hh----hhhhccccchhh-------------------HHHHHHHHHHHHHHcCCchhhcchhhc-----CChhHhHHHHH
Confidence 10 000000000000 001123467899999999999999987 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||||+++|++||||||.+||.+....++.+.|+++.++.|.|+++ |.|+..-+..+||||+||+.|+++.+|+|+++.+
T Consensus 161 ArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~till-IEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 161 ARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILL-IEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred HHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEE-EEeccHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 999999999999999999999999999999999998765677666 4788999999999999999999999999999864
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=355.72 Aligned_cols=210 Identities=29% Similarity=0.414 Sum_probs=175.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+. ++++|+|+|++++|||+++|+|+||||||||+|+|+|..++ .+|+|.+||.++
T Consensus 334 ~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~i 399 (588)
T PRK13657 334 AVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTDI 399 (588)
T ss_pred eEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEEh
Confidence 5899999999852 23589999999999999999999999999999999998763 589999999886
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~v~~~~ 798 (1250)
.. ..+++.++||||++.+++ .|++||+.++. | +.++++ +.++++..++.+ -.|+.+|+.
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~~- 468 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR----P-DATDEE----MRAAAERAQAHDFIERKPDGYDTVVGER- 468 (588)
T ss_pred hhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhCcccccchhcCC-
Confidence 53 457788999999998885 59999998752 1 233333 445555555443 356777653
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
+..||||||||++|||+|+++|+|++||||||+||+.++..+++.|+++. +++|+|++||+++ ..+.+|++++|++
T Consensus 469 g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~- 544 (588)
T PRK13657 469 GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDN- 544 (588)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEEC-
Confidence 35699999999999999999999999999999999999999999999874 4899999999974 5788999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 545 G~i~~~g~~ 553 (588)
T PRK13657 545 GRVVESGSF 553 (588)
T ss_pred CEEEEeCCH
Confidence 788888874
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=354.82 Aligned_cols=192 Identities=26% Similarity=0.442 Sum_probs=157.1
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHccCCC
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 2 ~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~ 78 (1250)
+||+|+||||||||+|+|+|+++|. +|+|++||.|+.+. ..|+.+|||+|++.+| +.||+||+.++...
T Consensus 502 vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~p~---- 573 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGNPE---- 573 (709)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhh-cCcHHHHHhcCCCC----
Confidence 7999999999999999999999975 99999999998654 4689999999996665 57999999875321
Q ss_pred cchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHH
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~ 158 (1250)
.+ .++.++++...+- .+. ...++..+||.||+.+ .+||||||||++|||
T Consensus 574 ~~----------------------~e~i~~A~~~ag~-----~~f---I~~lP~gy~t~v~E~G-~~LSGGQrQrlalAR 622 (709)
T COG2274 574 AT----------------------DEEIIEAAQLAGA-----HEF---IENLPMGYDTPVGEGG-ANLSGGQRQRLALAR 622 (709)
T ss_pred CC----------------------HHHHHHHHHHhCc-----HHH---HHhcccccccccccCC-CCCCHHHHHHHHHHH
Confidence 11 0111111111110 112 3358889999999765 569999999999999
Q ss_pred HHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 159 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||+++|+||+||||||+||+.+++.|.+.|.++.+ |+|+|++.|+ ..+.+.+|||+||++|+++++|+++|+.+
T Consensus 623 aLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHR--l~ti~~adrIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 623 ALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHR--LSTIRSADRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred HhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEcc--chHhhhccEEEEccCCceeccCCHHHHHH
Confidence 99999999999999999999999999999999864 6888887554 57889999999999999999999999876
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=324.76 Aligned_cols=191 Identities=27% Similarity=0.417 Sum_probs=162.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc--cccceEEeeccccccCCCCCHHHHHHHHHHccCCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF--QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~ 78 (1250)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.++.++..
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 97 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLP 97 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999865 99999999987432 34567999999999999999999999876543211
Q ss_pred cchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHH
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~ 158 (1250)
.. + .+.+++++++.+||.+..++.++. |||||||||+||+
T Consensus 98 ~~-----------~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~ 137 (302)
T TIGR01188 98 KD-----------E------------------------AEERAEELLELFELGEAADRPVGT-----YSGGMRRRLDIAA 137 (302)
T ss_pred HH-----------H------------------------HHHHHHHHHHHcCChhHhCCchhh-----CCHHHHHHHHHHH
Confidence 00 0 011256789999999888887765 9999999999999
Q ss_pred HHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 159 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|+|++ +|+..++.+.||+|++|++|++++.|+++++.+
T Consensus 138 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvi~~-sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 138 SLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLT-THYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999999999999998754 7888877 456788889999999999999999999998765
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=354.70 Aligned_cols=187 Identities=27% Similarity=0.431 Sum_probs=157.7
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++|.|+. ++++|+|+|++++|||++||+||||||||||+|+|+|..+ +.+|+|.+||.++
T Consensus 334 ~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~i~g~~i 399 (529)
T TIGR02868 334 TLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD--PLQGEVTLDGVSV 399 (529)
T ss_pred eEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEh
Confidence 5899999999852 2358999999999999999999999999999999999876 4589999999875
Q ss_pred C--cccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCCC
Q 000860 729 E--QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSPGS 799 (1250)
Q Consensus 729 ~--~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~v~~~~~ 799 (1250)
+ ...+++.++||||++.+|+ .|++||+.++. | +.+++ .++++++..++.+ -.||.+|+.+
T Consensus 400 ~~~~~~lr~~i~~V~Q~~~lF~-~TI~eNI~~g~----~-~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige~G- 468 (529)
T TIGR02868 400 SSLQDELRRRISVFAQDAHLFD-TTVRDNLRLGR----P-DATDE----ELWAALERVGLADWLRSLPDGLDTVLGEGG- 468 (529)
T ss_pred hhHHHHHHhheEEEccCccccc-ccHHHHHhccC----C-CCCHH----HHHHHHHHcCCHHHHHhCcccccchhcccc-
Confidence 5 3566789999999999885 59999998752 1 23333 3566666666543 4578888744
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCC
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQP 861 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 861 (1250)
..||||||||++|||||+++|+||+||||||+||++++..+++.|+++. +++|+|+++|++
T Consensus 469 ~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 469 ARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 4699999999999999999999999999999999999999999999863 589999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=301.93 Aligned_cols=201 Identities=21% Similarity=0.306 Sum_probs=153.9
Q ss_pred eeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCcc
Q 000860 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 727 (1250)
Q Consensus 648 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 727 (1250)
..+-++||+|.|+ +.++++++++|-|.=-..+||+||||.||||||++|.|...+ ..|+..-
T Consensus 585 PvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RK---- 646 (807)
T KOG0066|consen 585 PVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRK---- 646 (807)
T ss_pred CeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhc----
Confidence 3578899998875 356789999999999999999999999999999999998764 3455432
Q ss_pred CCcccccceEEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000860 728 KEQSTFARISGYVEQED--VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 728 ~~~~~~~~~~~yv~q~~--~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgG 805 (1250)
..+-+||+..|.. .+-...|..|.|.-..++ +. +.....+..+||...++|+- ...||||
T Consensus 647 ----nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNl------py----q~ARK~LG~fGL~sHAHTik----ikdLSGG 708 (807)
T KOG0066|consen 647 ----NHRLRIGWFDQHANEALNGEETPVEYLQRKFNL------PY----QEARKQLGTFGLASHAHTIK----IKDLSGG 708 (807)
T ss_pred ----cceeeeechhhhhHHhhccccCHHHHHHHhcCC------Ch----HHHHHHhhhhhhhhccceEe----eeecCCc
Confidence 2334688888873 344566777776533222 22 22456788899999888863 2469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
||-||++|..-++.|+||||||||++||.++...+.+.|++. ...||+++|+.+. +.+--..+.|+.+.|.-.-.|
T Consensus 709 QKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eIdG 784 (807)
T KOG0066|consen 709 QKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEIDG 784 (807)
T ss_pred chHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhccc
Confidence 999999999999999999999999999999999999999876 4589999999653 444445677776656555555
Q ss_pred CCC
Q 000860 886 KLG 888 (1250)
Q Consensus 886 ~~~ 888 (1250)
..+
T Consensus 785 dFe 787 (807)
T KOG0066|consen 785 DFE 787 (807)
T ss_pred cHH
Confidence 543
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=312.43 Aligned_cols=192 Identities=28% Similarity=0.380 Sum_probs=158.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc------cccceEEeeccccccCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~ 74 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 104 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE 104 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhh
Confidence 47999999999999999999999865 99999999887532 2356799999999999999999999886432
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 154 (1250)
... ... .+ ...+++++++.+||.+..++.+++ |||||||||
T Consensus 105 ~~~-~~~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv 145 (235)
T cd03261 105 HTR-LSE---------EE------------------------IREIVLEKLEAVGLRGAEDLYPAE-----LSGGMKKRV 145 (235)
T ss_pred ccC-CCH---------HH------------------------HHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHH
Confidence 110 000 00 011256788999998777777654 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhH
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 155 ~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~ 234 (1250)
+|||||+.+|+++||||||+|||+.++..+.+.|++++++.++|+|++. |+..++.+++|++++|++|++++.|+++++
T Consensus 146 ~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vs-H~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (235)
T cd03261 146 ALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVT-HDLDTAFAIADRIAVLYDGKIVAEGTPEEL 224 (235)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe-cCHHHHHHhcCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999999999999999999999998764577887764 556778889999999999999999998775
Q ss_pred H
Q 000860 235 L 235 (1250)
Q Consensus 235 ~ 235 (1250)
.
T Consensus 225 ~ 225 (235)
T cd03261 225 R 225 (235)
T ss_pred c
Confidence 3
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=328.76 Aligned_cols=191 Identities=24% Similarity=0.339 Sum_probs=162.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc-cccceEEeeccccccCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF-QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~-~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
+++|+|||||||||||++|+|+.+|+ +|+|.++|.++... ..++.+|||+|+..+|+++||.||+.|+.+.++...
T Consensus 47 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~ 123 (377)
T PRK11607 47 IFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPK 123 (377)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCH
Confidence 47999999999999999999999865 99999999987543 236789999999999999999999999865332110
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
.+ .+++++++++.+||.+..+..+. +|||||||||+||||
T Consensus 124 -----------~~------------------------~~~~v~~~l~~l~L~~~~~~~~~-----~LSgGq~QRVaLARA 163 (377)
T PRK11607 124 -----------AE------------------------IASRVNEMLGLVHMQEFAKRKPH-----QLSGGQRQRVALARS 163 (377)
T ss_pred -----------HH------------------------HHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHH
Confidence 00 01236788999999887777665 499999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|+.+|++||||||||+||+.++.++.+.|+++.++.+.|+|++ +|+..++..++|++++|++|+++..|+++++.
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~v-THd~~ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMV-THDQEEAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-cCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999877668888876 56678899999999999999999999999874
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=304.50 Aligned_cols=192 Identities=22% Similarity=0.346 Sum_probs=169.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc------c-cceEEeeccccccCCCCCHHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ------V-QRASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~-~~~~~yv~Q~~~~~~~~TV~e~l~f~~~ 73 (1250)
|..|||-||||||||+++|.++.+|+ +|+|.++|.++.... . ++.++.|+|...++|+.||.||..|+.+
T Consensus 56 IfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe 132 (386)
T COG4175 56 IFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 132 (386)
T ss_pred EEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee
Confidence 57899999999999999999999975 999999999884332 2 4679999999999999999999999998
Q ss_pred ccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchh
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKR 153 (1250)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqR 153 (1250)
.++.+... . ++++.+.|+..||....+..+. +||||+|||
T Consensus 133 v~Gv~~~e-----------r------------------------~~~a~~~l~~VgL~~~~~~yp~-----eLSGGMqQR 172 (386)
T COG4175 133 VQGVPKAE-----------R------------------------EERALEALELVGLEGYADKYPN-----ELSGGMQQR 172 (386)
T ss_pred ecCCCHHH-----------H------------------------HHHHHHHHHHcCchhhhhcCcc-----cccchHHHH
Confidence 88764321 1 1236778999999998887765 499999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhh
Q 000860 154 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233 (1250)
Q Consensus 154 v~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~ 233 (1250)
|.|||||+.+|+|||+|||+|+|||--+.++.+.|.++.++.++|+|++ +|+.+|++++-|||.+|.+|+++..|+++|
T Consensus 173 VGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFi-tHDLdEAlriG~rIaimkdG~ivQ~Gtp~e 251 (386)
T COG4175 173 VGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFI-THDLDEALRIGDRIAIMKDGEIVQVGTPEE 251 (386)
T ss_pred HHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEE-ecCHHHHHhccceEEEecCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999988889999886 678999999999999999999999999999
Q ss_pred HHH
Q 000860 234 VLE 236 (1250)
Q Consensus 234 ~~~ 236 (1250)
+..
T Consensus 252 Il~ 254 (386)
T COG4175 252 ILL 254 (386)
T ss_pred HHc
Confidence 864
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=355.03 Aligned_cols=212 Identities=26% Similarity=0.400 Sum_probs=177.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++++|+. .++++|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 330 ~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~--~~~G~I~i~g~~i 396 (571)
T TIGR02203 330 DVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE--PDSGQILLDGHDL 396 (571)
T ss_pred eEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEeH
Confidence 5899999998853 13468999999999999999999999999999999999876 3579999999876
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~v~~~~ 798 (1250)
++ ..+++.++||||++.+++ .|++||+.++. +.+.++ +.++++++.+|+.+ -.|+.+|+.
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~- 466 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGEN- 466 (571)
T ss_pred HhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCC-
Confidence 43 456788999999998875 59999998652 112333 34566777776643 346777764
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
.+.||||||||++|||+++++|+|++||||||+||..+++.+++.|++++ +++|+|++||++ +..+.+|+|++|++
T Consensus 467 g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~- 542 (571)
T TIGR02203 467 GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDD- 542 (571)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeC-
Confidence 35799999999999999999999999999999999999999999999874 579999999997 46788999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 543 g~i~~~g~~ 551 (571)
T TIGR02203 543 GRIVERGTH 551 (571)
T ss_pred CEEEeeCCH
Confidence 788888875
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=327.97 Aligned_cols=196 Identities=24% Similarity=0.386 Sum_probs=162.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc-ccceEEeeccccccCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
+++|+|||||||||||++|+|+++|+ +|+|.++|+++.... .++.++||+|+..+++++||+||+.|+.+......
T Consensus 30 ~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~ 106 (353)
T PRK10851 30 MVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE 106 (353)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccccc
Confidence 47999999999999999999999865 999999999885432 34679999999999999999999999764321000
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
. ....+ .+++++++++.+||++..+..+.+ |||||||||+||||
T Consensus 107 ~-------~~~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGq~QRvalArA 150 (353)
T PRK10851 107 R-------PNAAA------------------------IKAKVTQLLEMVQLAHLADRYPAQ-----LSGGQKQRVALARA 150 (353)
T ss_pred C-------CCHHH------------------------HHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHHHHHHH
Confidence 0 00000 012367889999998887777654 99999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
|+.+|++|||||||+|||+.++.++.+.|+++.++.+.|+|++ +|+..++..++|+|++|++|++++.|+++++.+
T Consensus 151 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~v-THd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 151 LAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFV-THDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999987667887776 566788999999999999999999999988743
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=292.37 Aligned_cols=217 Identities=27% Similarity=0.421 Sum_probs=181.5
Q ss_pred eeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCcc
Q 000860 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 727 (1250)
Q Consensus 648 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 727 (1250)
..++++|++..+ ++++||+|+|.+|+|||..+|+|||||||||||++++|..++. +|.+.+.|+.
T Consensus 30 ~li~l~~v~v~r-------------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~~~G~~ 94 (257)
T COG1119 30 PLIELKNVSVRR-------------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGRR 94 (257)
T ss_pred ceEEecceEEEE-------------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCceeeeeee
Confidence 468999999876 3568999999999999999999999999999999999987643 7899999987
Q ss_pred CCc----ccccceEEEEcCC--CCCCCCCCHHHHHH--HHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000860 728 KEQ----STFARISGYVEQE--DVHSPQVTIEESLW--FSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGS 799 (1250)
Q Consensus 728 ~~~----~~~~~~~~yv~q~--~~~~~~ltv~e~l~--~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~ 799 (1250)
..+ .+.|+.||||.-+ ..+.+..+|+|-+. |.+..........++..+++..+++.+|+.+.+|+..+.
T Consensus 95 ~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~--- 171 (257)
T COG1119 95 FGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS--- 171 (257)
T ss_pred ccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhh---
Confidence 533 4568899999744 33445778888653 222222222123456677889999999999999999876
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC--CCEEEEEecCCCHHHHHhhcceeeeec
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT--GRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
||-|||||+-|||||+.+|.+||||||++|||...++.+.+.|.+++.. +.++|++||++. |+-..|++++++++
T Consensus 172 --LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~ 248 (257)
T COG1119 172 --LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKE 248 (257)
T ss_pred --cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeC
Confidence 9999999999999999999999999999999999999999999999865 789999999985 78899999999985
Q ss_pred CcEEEEeCC
Q 000860 878 GGRVIYGGK 886 (1250)
Q Consensus 878 gg~~~~~g~ 886 (1250)
|+++++|.
T Consensus 249 -g~v~~~g~ 256 (257)
T COG1119 249 -GEVVAQGK 256 (257)
T ss_pred -Cceeeccc
Confidence 78988874
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=298.59 Aligned_cols=175 Identities=30% Similarity=0.463 Sum_probs=145.9
Q ss_pred EEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc-
Q 000860 652 FHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ- 730 (1250)
Q Consensus 652 ~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~- 730 (1250)
++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~ 66 (180)
T cd03214 2 VENLSVGYG-------------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASL 66 (180)
T ss_pred eeEEEEEEC-------------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcC
Confidence 567777663 2358999999999999999999999999999999999866 358999999987642
Q ss_pred --ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHH
Q 000860 731 --STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808 (1250)
Q Consensus 731 --~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerq 808 (1250)
..+++.++|++| +++.+++.+..++.+. .|||||||
T Consensus 67 ~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~~~-----~LS~G~~q 104 (180)
T cd03214 67 SPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRPFN-----ELSGGERQ 104 (180)
T ss_pred CHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCCcc-----cCCHHHHH
Confidence 123445677776 5556677665555543 49999999
Q ss_pred HHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 809 r~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
|++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|+++ ++.+.+|++++|.+ |++.+.|
T Consensus 105 rl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~~~ 180 (180)
T cd03214 105 RVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKD-GRIVAQG 180 (180)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999998766 899999999985 56688999999985 6776543
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=323.07 Aligned_cols=191 Identities=28% Similarity=0.358 Sum_probs=162.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc--cccceEEeeccccccCCCCCHHHHHHHHHHccCCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF--QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~ 78 (1250)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.+||++|++.+++.+||+||+.+.....+..
T Consensus 69 i~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 145 (340)
T PRK13536 69 CFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMS 145 (340)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999865 99999999987532 34678999999999999999999998755433211
Q ss_pred cchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHH
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~ 158 (1250)
.. + ....++++++.+||++..++.+++ ||||||||++||+
T Consensus 146 ~~-----------~------------------------~~~~~~~ll~~~~L~~~~~~~~~~-----LS~G~kqrv~lA~ 185 (340)
T PRK13536 146 TR-----------E------------------------IEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLAR 185 (340)
T ss_pred HH-----------H------------------------HHHHHHHHHHHcCCchhhCCChhh-----CCHHHHHHHHHHH
Confidence 00 0 001255678999999888888865 9999999999999
Q ss_pred HHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 159 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||+++|++|||||||+|||+.++.++++.|+++.+ .|+|+|++ +|+.+++.++||+|++|++|++++.|+++++.+
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilis-SH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLT-THFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999876 48888887 456788999999999999999999999999864
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=298.18 Aligned_cols=191 Identities=19% Similarity=0.299 Sum_probs=158.5
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|++++++ ++.+++ +|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccC
Confidence 67889998773 123555 999999999999999999999999999999866 35899999998765
Q ss_pred cccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHH
Q 000860 730 QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKR 809 (1250)
Q Consensus 730 ~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr 809 (1250)
... ++.++|++|++.+++..||+||+.+..... . ..+.++++++.+++.+..++.++ .||||||||
T Consensus 66 ~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~r 131 (195)
T PRK13541 66 NIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKCY-----SLSSGMQKI 131 (195)
T ss_pred hhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccChh-----hCCHHHHHH
Confidence 422 345899999987888899999998765332 1 13456788899999877777664 499999999
Q ss_pred HHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcce
Q 000860 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDEL 872 (1250)
Q Consensus 810 ~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v 872 (1250)
++|||+|+.+|++++|||||+|||+.++..+.+.|++..++|+|||+++|+++ ....+|.+
T Consensus 132 l~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~i~~~~~~ 192 (195)
T PRK13541 132 VAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES--SIKSAQIL 192 (195)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc--ccchhhee
Confidence 99999999999999999999999999999999999877677999999999985 34456654
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=301.67 Aligned_cols=198 Identities=25% Similarity=0.317 Sum_probs=159.2
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++. .++.+|+|+|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 72 (207)
T cd03369 6 EIEVENLSVRYAP-----------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDI 72 (207)
T ss_pred eEEEEEEEEEeCC-----------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEh
Confidence 5789999988742 12358999999999999999999999999999999999866 3579999999875
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgG 805 (1250)
.. ...++.++|++|++.+++ .||+||+.+.. ..+.+ .+.+.++ + +.. ...||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~~----~~~~~l~---~----~~~-----~~~LS~G 129 (207)
T cd03369 73 STIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSDE----EIYGALR---V----SEG-----GLNLSQG 129 (207)
T ss_pred HHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCHH----HHHHHhh---c----cCC-----CCcCCHH
Confidence 32 234567999999998776 59999986421 11221 1233333 1 222 2469999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeC
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g 885 (1250)
|+||++|||+|+.+|++++|||||+|||+.+...+.+.|+++. +|+|+|+++|++. ++ ..+|++++|++ |++...|
T Consensus 130 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~-~~~d~v~~l~~-g~i~~~g 205 (207)
T cd03369 130 QRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TI-IDYDKILVMDA-GEVKEYD 205 (207)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999999999999999985 4899999999975 34 45999999986 6887776
Q ss_pred C
Q 000860 886 K 886 (1250)
Q Consensus 886 ~ 886 (1250)
+
T Consensus 206 ~ 206 (207)
T cd03369 206 H 206 (207)
T ss_pred C
Confidence 5
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=327.77 Aligned_cols=191 Identities=26% Similarity=0.396 Sum_probs=161.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc-ccceEEeeccccccCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++.... .++.++||+|+..+++.+||+||+.|+...++...
T Consensus 31 ~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~ 107 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 107 (369)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCH
Confidence 47999999999999999999999865 999999999875432 34679999999999999999999999764332110
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
. + .+.+++++++.+||.+..++.+++ |||||||||+||||
T Consensus 108 ~-----------~------------------------~~~~~~~~l~~lgL~~~~~~~~~~-----LSgGq~QRvaLAra 147 (369)
T PRK11000 108 E-----------E------------------------INQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRT 147 (369)
T ss_pred H-----------H------------------------HHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHHH
Confidence 0 0 011367789999998877777654 99999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|+.+|++|||||||+|||+.++.++.+.|+++.++.+.|+|++. |+..++..++|+|++|++|+++..|+++++.
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vT-Hd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVT-HDQVEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999998776578888764 5567888999999999999999999998874
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=315.84 Aligned_cols=210 Identities=23% Similarity=0.341 Sum_probs=164.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++. .++.+|+|+|++++|||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 19 ~i~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 85 (257)
T cd03288 19 EIKIHDLCVRYEN-----------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDI 85 (257)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEEh
Confidence 5899999988742 12468999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccccccc-------ccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHAL-------VGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~-------v~~~~ 798 (1250)
.. ..+++.++|++|++.+++ .|++||+.... .... +.+.++++..++.+..+.. .+. .
T Consensus 86 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~----~~~~~~l~~~~l~~~~~~~~~~l~~~~~~-~ 153 (257)
T cd03288 86 SKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTD----DRLWEALEIAQLKNMVKSLPGGLDAVVTE-G 153 (257)
T ss_pred hhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCH----HHHHHHHHHhCcHHHHhhcccccCcEecc-C
Confidence 43 245678999999998776 59999874211 1111 1233344444443322221 211 2
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
...||||||||++|||+|+.+|++++|||||+|||+.++..+.+.++++. ++.|||+++|++. ++. .+|++++|++
T Consensus 154 ~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~-~~dri~~l~~- 229 (257)
T cd03288 154 GENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TIL-DADLVLVLSR- 229 (257)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHH-hCCEEEEEEC-
Confidence 34699999999999999999999999999999999999999999999874 5899999999986 344 5999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 230 G~i~~~g~~ 238 (257)
T cd03288 230 GILVECDTP 238 (257)
T ss_pred CEEEEeCCH
Confidence 789888875
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=289.74 Aligned_cols=164 Identities=27% Similarity=0.381 Sum_probs=141.6
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++. ++++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.
T Consensus 2 ~~~~~~~~~~~------------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~---- 63 (166)
T cd03223 2 ELENLSLATPD------------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG---- 63 (166)
T ss_pred EEEEEEEEcCC------------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC----
Confidence 57888877631 2458999999999999999999999999999999999865 35799999873
Q ss_pred ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHH
Q 000860 731 STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRL 810 (1250)
Q Consensus 731 ~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~ 810 (1250)
+.++|++|++.++ ..||+||+.+. . ...||||||||+
T Consensus 64 ----~~i~~~~q~~~~~-~~tv~~nl~~~---------------------------------~-----~~~LS~G~~~rv 100 (166)
T cd03223 64 ----EDLLFLPQRPYLP-LGTLREQLIYP---------------------------------W-----DDVLSGGEQQRL 100 (166)
T ss_pred ----ceEEEECCCCccc-cccHHHHhhcc---------------------------------C-----CCCCCHHHHHHH
Confidence 5689999998764 67999998642 1 135999999999
Q ss_pred HHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcE
Q 000860 811 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 811 ~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
+|||+|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|+++|++. ....+|++++|+++|.
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~~ 165 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEGG 165 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCCC
Confidence 9999999999999999999999999999999999876 689999999974 4578999999998764
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=305.44 Aligned_cols=194 Identities=26% Similarity=0.387 Sum_probs=160.4
Q ss_pred EEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCC--CCCCHHHHHHHHH
Q 000860 683 GIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHS--PQVTIEESLWFSA 760 (1250)
Q Consensus 683 ~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~--~~ltv~e~l~~~~ 760 (1250)
+++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.+.. ..++.++|++|++.++ ..+|+.|++.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4689999999999999999999999999866 35799999998753 2456799999998664 3479999998753
Q ss_pred hcCCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHH
Q 000860 761 NLRLP-KEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 839 (1250)
Q Consensus 761 ~l~~~-~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~ 839 (1250)
..... ........+++++++++.+++.+..++.++ .||||||||++|||+|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 21100 001122334568899999999887777765 499999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCCC
Q 000860 840 VMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLG 888 (1250)
Q Consensus 840 i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 888 (1250)
+.+.|++++++|+|||+++|++. ++.+.+|+++++ + |++++.|+.+
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~ 197 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQ 197 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHH
Confidence 99999999877999999999985 577889999999 5 7888888864
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=348.80 Aligned_cols=211 Identities=24% Similarity=0.388 Sum_probs=174.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+. .++.+|+|+|++++|||+++|+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 313 ~I~~~~v~~~y~~-----------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~--p~~G~i~~~g~~~ 379 (569)
T PRK10789 313 ELDVNIRQFTYPQ-----------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD--VSEGDIRFHDIPL 379 (569)
T ss_pred cEEEEEEEEECCC-----------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEH
Confidence 5899999998742 13468999999999999999999999999999999999876 4589999999986
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD-------SLRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~v~~~~ 798 (1250)
.. ..+++.++||+|++.+++ .|++||+.++. + +.+++ .++++++..++. +-.|+.+|+.
T Consensus 380 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~- 448 (569)
T PRK10789 380 TKLQLDSWRSRLAVVSQTPFLFS-DTVANNIALGR----P-DATQQ----EIEHVARLASVHDDILRLPQGYDTEVGER- 448 (569)
T ss_pred hhCCHHHHHhheEEEccCCeecc-ccHHHHHhcCC----C-CCCHH----HHHHHHHHcCCHHHHHhCcCcccceecCC-
Confidence 43 456788999999998886 59999997642 1 22333 344555555543 3346777664
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
...||||||||++|||||+++|+|++||||||+||+.++..+++.|+++. +|+|+|+++|+++ ....+|++++|++
T Consensus 449 g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~- 524 (569)
T PRK10789 449 GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQH- 524 (569)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeC-
Confidence 34699999999999999999999999999999999999999999999875 5899999999984 5678999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 525 G~i~~~g~~ 533 (569)
T PRK10789 525 GHIAQRGNH 533 (569)
T ss_pred CEEEEecCH
Confidence 799999885
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=348.96 Aligned_cols=200 Identities=31% Similarity=0.482 Sum_probs=167.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++++|+. .++++|+|+|++++|||++||+||||||||||+|+|+|..+ +.+|+|.+||.++
T Consensus 320 ~i~~~~v~f~y~~-----------~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~I~~~g~~i 386 (529)
T TIGR02857 320 SLEFSGLSVAYPG-----------RRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD--PTEGSIAVNGVPL 386 (529)
T ss_pred eEEEEEEEEECCC-----------CCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEeh
Confidence 5899999999853 12468999999999999999999999999999999999876 3579999999986
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~v~~~~ 798 (1250)
++ ..+++.++||+|++.+++ .|++||+.++. + ..++ +.++++++..++.+ -.||.+|+.+
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g 456 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR----P-DASD----AEIRRALERAGLDEFVAALPQGLDTLIGEGG 456 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccC----C-CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcccc
Confidence 53 457788999999998885 59999998752 1 2233 33566667666654 3467777633
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeee
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLM 875 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 875 (1250)
..||||||||++|||||+++|++++||||||+||+.+++.+++.|+++. +++|+|+++|+++ ..+.+|++++|
T Consensus 457 -~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 457 -AGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 4699999999999999999999999999999999999999999999875 5899999999974 56789999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=295.90 Aligned_cols=186 Identities=28% Similarity=0.439 Sum_probs=162.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc-------cccceEEeeccccccCCCCCHHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF-------QVQRASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~ 73 (1250)
+|||-|+||||||||+|+|+|+.+|+ +|.|.+||.-+.+. .-+|.+|||+|+-.+||++||+.||.|+..
T Consensus 26 vTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~ 102 (352)
T COG4148 26 ITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMW 102 (352)
T ss_pred eEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhc
Confidence 58999999999999999999999975 99999999876332 136889999999999999999999999753
Q ss_pred ccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchh
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKR 153 (1250)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqR 153 (1250)
... ....+++.+.||++|..+..... ||||||||
T Consensus 103 ~~~-----------------------------------------~~~fd~iv~lLGI~hLL~R~P~~-----LSGGEkQR 136 (352)
T COG4148 103 KSM-----------------------------------------RAQFDQLVALLGIEHLLDRYPGT-----LSGGEKQR 136 (352)
T ss_pred ccc-----------------------------------------hHhHHHHHHHhCcHHHHhhCCCc-----cCcchhhH
Confidence 110 00146788999999999887765 99999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhh
Q 000860 154 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233 (1250)
Q Consensus 154 v~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~ 233 (1250)
|+|+|||++.|++|++|||.|.||-.-..+++-.|+++.++.+.-++-+ +|-..|+.+++|+|++|++|++...|+.++
T Consensus 137 VAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYV-SHS~~Ev~RLAd~vV~le~GkV~A~g~~e~ 215 (352)
T COG4148 137 VAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYV-SHSLDEVLRLADRVVVLENGKVKASGPLEE 215 (352)
T ss_pred HHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEE-ecCHHHHHhhhheEEEecCCeEEecCcHHH
Confidence 9999999999999999999999999999999999999998877777665 566899999999999999999999999998
Q ss_pred HHH
Q 000860 234 VLE 236 (1250)
Q Consensus 234 ~~~ 236 (1250)
+.+
T Consensus 216 v~~ 218 (352)
T COG4148 216 VWG 218 (352)
T ss_pred Hhc
Confidence 743
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=342.82 Aligned_cols=206 Identities=17% Similarity=0.215 Sum_probs=173.1
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+ ++++|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~ 67 (490)
T PRK10938 3 SLQISQGTFRLS-------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHI 67 (490)
T ss_pred eEEEEeEEEEcC-------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCccc
Confidence 478999998873 2358999999999999999999999999999999999865 3579999998764
Q ss_pred Cc---ccccceEEEEcCCCCC--C------CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000860 729 EQ---STFARISGYVEQEDVH--S------PQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSP 797 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~--~------~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~ 797 (1250)
.. ...++.++|++|++.. + ..+||+|++.+. .+.+++++++++.+||.+..++.++.
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~- 135 (490)
T PRK10938 68 TRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFKY- 135 (490)
T ss_pred ccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCccc-
Confidence 32 2234568999998642 1 146888876431 12345688999999999888887765
Q ss_pred CCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeec
Q 000860 798 GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 798 ~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.+|++++|++
T Consensus 136 ----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~ 210 (490)
T PRK10938 136 ----LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLAD 210 (490)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999877999999999985 57788999999985
Q ss_pred CcEEEEeCCC
Q 000860 878 GGRVIYGGKL 887 (1250)
Q Consensus 878 gg~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 211 -G~i~~~~~~ 219 (490)
T PRK10938 211 -CTLAETGER 219 (490)
T ss_pred -CEEEEeCCH
Confidence 788888875
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=346.50 Aligned_cols=210 Identities=27% Similarity=0.336 Sum_probs=171.5
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+. ++++|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 334 ~i~~~~v~~~y~~------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~ 399 (585)
T TIGR01192 334 AVEFRHITFEFAN------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD--PTVGQILIDGIDI 399 (585)
T ss_pred eEEEEEEEEECCC------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC--CCCCEEEECCEEh
Confidence 5899999998742 2358999999999999999999999999999999999876 4589999999876
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCC-------cccccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL-------DSLRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l-------~~~~~~~v~~~~ 798 (1250)
.. ..+++.++||+|++.+++ .|++||+.++. + +.++++. .++++..++ .+..|+.+|+.
T Consensus 400 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~----~~a~~~~~~~~~i~~l~~g~~t~~~~~- 468 (585)
T TIGR01192 400 NTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR----E-GATDEEV----YEAAKAAAAHDFILKRSNGYDTLVGER- 468 (585)
T ss_pred hhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC----C-CCCHHHH----HHHHHHhCcHHHHHhccccccchhcCC-
Confidence 43 456788999999998875 69999998752 1 2334333 233333333 23345666654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
...||||||||++|||+|+++|++++|||||||||+.++..+.+.|+++. +++|+|+++|+++ ....+|++++|++
T Consensus 469 ~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~--~~~~~d~i~~l~~- 544 (585)
T TIGR01192 469 GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS--TVRNADLVLFLDQ- 544 (585)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH--HHHcCCEEEEEEC-
Confidence 34699999999999999999999999999999999999999999999874 5899999999984 4577999999985
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 545 G~i~~~g~~ 553 (585)
T TIGR01192 545 GRLIEKGSF 553 (585)
T ss_pred CEEEEECCH
Confidence 788888874
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=313.49 Aligned_cols=216 Identities=24% Similarity=0.336 Sum_probs=190.2
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++++++.++ ...+++|||++|++||+.||+|.||||||||+++|.|... +.+|+|.+||++.
T Consensus 4 ~l~~~~itK~f~-------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~--P~~GeI~v~G~~v 68 (501)
T COG3845 4 ALEMRGITKRFP-------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ--PDSGEIRVDGKEV 68 (501)
T ss_pred eEEEeccEEEcC-------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc--CCcceEEECCEEe
Confidence 578899998874 3568999999999999999999999999999999999877 4689999999985
Q ss_pred Cc----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQ----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
.- ...+.-||+|.|+..+.|++||.||+..+..-......+.++.+++++++.+..||.--.|.++++ ||-
T Consensus 69 ~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~d-----LsV 143 (501)
T COG3845 69 RIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD-----LSV 143 (501)
T ss_pred ccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeec-----CCc
Confidence 42 234567999999999999999999999886432222345677788899999999999888999976 999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEe
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 884 (1250)
||||||.|-++|.++|++|+|||||+-|-|....++.++|++++++|+|||++||... |+.+.+||+.||.+ |+++-.
T Consensus 144 G~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~-Gkvvgt 221 (501)
T COG3845 144 GEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRR-GKVVGT 221 (501)
T ss_pred chhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeC-CeEEee
Confidence 9999999999999999999999999999999999999999999999999999999985 79999999999986 676655
Q ss_pred CC
Q 000860 885 GK 886 (1250)
Q Consensus 885 g~ 886 (1250)
-+
T Consensus 222 ~~ 223 (501)
T COG3845 222 VD 223 (501)
T ss_pred ec
Confidence 44
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=326.07 Aligned_cols=186 Identities=32% Similarity=0.426 Sum_probs=154.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHccCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~ 77 (1250)
.+||+|+||||||||+++|+|+.+|+ +|+|.+||.+.++. .++++++||+|++.+|+ .|+||||.++...
T Consensus 349 ~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~~--- 421 (559)
T COG4988 349 LTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLARPD--- 421 (559)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCCc---
Confidence 38999999999999999999999865 99999999987654 57899999999977665 6999999886311
Q ss_pred CcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCC------ccccccccCCCccccCccccc
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGL------DLCSDTVVGSEMLRGVSGGQK 151 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~~t~vg~~~~~~LSGGqk 151 (1250)
.+. . .+.++++..|| ++..||.+|++ +++|||||+
T Consensus 422 -~s~----e---------------------------------~i~~al~~a~l~~~v~~p~GLdt~ige~-G~~LSgGQ~ 462 (559)
T COG4988 422 -ASD----E---------------------------------EIIAALDQAGLLEFVPKPDGLDTVIGEG-GAGLSGGQA 462 (559)
T ss_pred -CCH----H---------------------------------HHHHHHHHhcHHHhhcCCCcccchhccC-CCCCCHHHH
Confidence 110 0 12223333333 45779999975 567999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecCh
Q 000860 152 KRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPR 231 (1250)
Q Consensus 152 qRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~ 231 (1250)
|||++||||+++++++++||||++||.+++..|.+.|.++++ ++|++++.| +.+....+|+|++|++|++++.|.+
T Consensus 463 QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itH--rl~~~~~~D~I~vld~G~l~~~g~~ 538 (559)
T COG4988 463 QRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITH--RLEDAADADRIVVLDNGRLVEQGTH 538 (559)
T ss_pred HHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEc--ChHHHhcCCEEEEecCCceeccCCH
Confidence 999999999999999999999999999999999999999986 588888755 4567778999999999999999999
Q ss_pred hhHHH
Q 000860 232 AEVLE 236 (1250)
Q Consensus 232 ~~~~~ 236 (1250)
+++.+
T Consensus 539 ~~L~~ 543 (559)
T COG4988 539 EELSE 543 (559)
T ss_pred HHHhh
Confidence 99854
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=323.05 Aligned_cols=191 Identities=25% Similarity=0.361 Sum_probs=160.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc------ccceEEeeccccccCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ------VQRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~ 74 (1250)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++...
T Consensus 33 i~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~ 109 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLEL 109 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999865 999999999875421 256799999999999999999999987543
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 154 (1250)
.+.... + .+.+++++++.+||.+..++.+++ |||||||||
T Consensus 110 ~~~~~~-----------~------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qRv 149 (343)
T PRK11153 110 AGTPKA-----------E------------------------IKARVTELLELVGLSDKADRYPAQ-----LSGGQKQRV 149 (343)
T ss_pred cCCCHH-----------H------------------------HHHHHHHHHHHcCCchhhhCChhh-----CCHHHHHHH
Confidence 321100 0 011256789999998877777654 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhH
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 155 ~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~ 234 (1250)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.++.++|+|++. |+..++.++||++++|++|++++.|+++++
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvt-H~~~~i~~~~d~v~~l~~G~i~~~g~~~~~ 228 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLIT-HEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999765578888775 556778889999999999999999998887
Q ss_pred H
Q 000860 235 L 235 (1250)
Q Consensus 235 ~ 235 (1250)
.
T Consensus 229 ~ 229 (343)
T PRK11153 229 F 229 (343)
T ss_pred H
Confidence 4
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=304.54 Aligned_cols=190 Identities=28% Similarity=0.393 Sum_probs=157.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCc--ccccceEEeeccccccCCCCCHHHHHHHHHHccCCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDE--FQVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~--~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~ 78 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.. ...++.++|++|++.+++.+||+||+.+.....+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 104 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVP 104 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999864 9999999987643 133567999999998999999999998865432210
Q ss_pred cchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHH
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~ 158 (1250)
.. + .+..++++++.+||++..++.+++ ||||||||++||+
T Consensus 105 ~~-----------~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~la~ 144 (220)
T cd03265 105 GA-----------E------------------------RRERIDELLDFVGLLEAADRLVKT-----YSGGMRRRLEIAR 144 (220)
T ss_pred HH-----------H------------------------HHHHHHHHHHHcCCHHHhhCChhh-----CCHHHHHHHHHHH
Confidence 00 0 011256789999998877877765 9999999999999
Q ss_pred HHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhH
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 159 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~ 234 (1250)
|++.+|++++|||||+|||+.++..+.+.|+++.++.++|+|++ +|+.+++.+.+|++++|++|++++.|+++++
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~-tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 145 SLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT-THYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999999999876557787776 4557788889999999999999999887653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=338.54 Aligned_cols=217 Identities=23% Similarity=0.345 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i 72 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDV 72 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEc
Confidence 58999999987421 113469999999999999999999999999999999999876 3589999999886
Q ss_pred Ccc---c----ccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 000860 729 EQS---T----FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFG 801 (1250)
Q Consensus 729 ~~~---~----~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~ 801 (1250)
... . .++.++|++|++.+++.+|+.||+.+..... ....++.++++.++++.+||.+..|+.++.
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~----- 144 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPSQ----- 144 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCccc-----
Confidence 531 1 1467999999999999999999998765322 223455567789999999999887777754
Q ss_pred CCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEE
Q 000860 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRV 881 (1250)
Q Consensus 802 lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 881 (1250)
|||||+||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|+|+++|++. ..+.+|++++|.+ |++
T Consensus 145 LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~-G~i 221 (648)
T PRK10535 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRD-GEI 221 (648)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999998777999999999974 4567999999985 789
Q ss_pred EEeCCC
Q 000860 882 IYGGKL 887 (1250)
Q Consensus 882 ~~~g~~ 887 (1250)
++.|+.
T Consensus 222 ~~~g~~ 227 (648)
T PRK10535 222 VRNPPA 227 (648)
T ss_pred EeecCc
Confidence 988876
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=350.49 Aligned_cols=212 Identities=26% Similarity=0.401 Sum_probs=174.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.|+.. .++.+|+|+|++++|||.++|+|+||||||||+|+|+|..+ +.+|+|.+||.++
T Consensus 337 ~i~~~~v~f~y~~~----------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~--p~~G~I~i~g~~i 404 (576)
T TIGR02204 337 EIEFEQVNFAYPAR----------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD--PQSGRILLDGVDL 404 (576)
T ss_pred eEEEEEEEEECCCC----------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCEEEECCEEH
Confidence 58999999988531 12569999999999999999999999999999999999876 3579999999886
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCC
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~-------~~~~~v~~~~ 798 (1250)
++ ..+++.++|+||++.+++ .|++||+.++. | +.++ +.++++++..++.+ -.|+.+|+.
T Consensus 405 ~~~~~~~~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~----~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~- 473 (576)
T TIGR02204 405 RQLDPAELRARMALVPQDPVLFA-ASVMENIRYGR----P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGER- 473 (576)
T ss_pred HhcCHHHHHHhceEEccCCcccc-ccHHHHHhcCC----C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCC-
Confidence 53 456788999999998875 69999997642 1 1232 33556666666543 235566653
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
...||||||||++|||+++++|++++||||||+||+.+++.+++.|+++. +++|+|++||+++ ....+|++++|++
T Consensus 474 g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~- 549 (576)
T TIGR02204 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQ- 549 (576)
T ss_pred CCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC-
Confidence 35699999999999999999999999999999999999999999999985 5899999999974 5678999999986
Q ss_pred cEEEEeCCC
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 550 g~~~~~g~~ 558 (576)
T TIGR02204 550 GRIVAQGTH 558 (576)
T ss_pred CEEEeeecH
Confidence 788888875
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=286.12 Aligned_cols=158 Identities=28% Similarity=0.423 Sum_probs=137.9
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.++ ++++|+++|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 1 l~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 65 (163)
T cd03216 1 LELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVS 65 (163)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECC
Confidence 36788888773 2358999999999999999999999999999999999876 35799999998764
Q ss_pred cc----cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000860 730 QS----TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 730 ~~----~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgG 805 (1250)
.. ..++.++|++| ||||
T Consensus 66 ~~~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G 86 (163)
T cd03216 66 FASPRDARRAGIAMVYQ-----------------------------------------------------------LSVG 86 (163)
T ss_pred cCCHHHHHhcCeEEEEe-----------------------------------------------------------cCHH
Confidence 31 23456788887 8999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEE
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIY 883 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~ 883 (1250)
||||++|||+|+.+|++++|||||+|||..++..+.+.|++++++|+|||+++|++. ++.+.+|++++|.+ |++++
T Consensus 87 ~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~-g~i~~ 162 (163)
T cd03216 87 ERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRD-GRVVG 162 (163)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEe
Confidence 999999999999999999999999999999999999999999777999999999974 46778999999986 67654
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=323.72 Aligned_cols=191 Identities=21% Similarity=0.322 Sum_probs=160.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc-------ccceEEeeccccccCCCCCHHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-------VQRASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~ 73 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.... .++.++|++|+..+++++||+||+.++..
T Consensus 56 i~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~ 132 (400)
T PRK10070 56 IFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132 (400)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999865 999999999875432 13579999999999999999999998765
Q ss_pred ccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchh
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKR 153 (1250)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqR 153 (1250)
.++.... + ...+++++++.+||.+..++.+.+ ||||||||
T Consensus 133 ~~~~~~~-----------~------------------------~~~~~~e~L~~~gL~~~~~~~~~~-----LSgGq~QR 172 (400)
T PRK10070 133 LAGINAE-----------E------------------------RREKALDALRQVGLENYAHSYPDE-----LSGGMRQR 172 (400)
T ss_pred hcCCCHH-----------H------------------------HHHHHHHHHHHcCCChhhhcCccc-----CCHHHHHH
Confidence 4321100 0 001256789999998877776654 99999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhh
Q 000860 154 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233 (1250)
Q Consensus 154 v~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~ 233 (1250)
|+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.++|+|++. |+.+++.+++|+|++|++|+++..|++++
T Consensus 173 v~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivT-Hd~~~~~~~~Dri~vL~~G~i~~~g~~~~ 251 (400)
T PRK10070 173 VGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS-HDLDEAMRIGDRIAIMQNGEVVQVGTPDE 251 (400)
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEE-CCHHHHHHhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999998765678888774 55778889999999999999999999888
Q ss_pred HH
Q 000860 234 VL 235 (1250)
Q Consensus 234 ~~ 235 (1250)
+.
T Consensus 252 l~ 253 (400)
T PRK10070 252 IL 253 (400)
T ss_pred HH
Confidence 64
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=298.72 Aligned_cols=195 Identities=23% Similarity=0.402 Sum_probs=149.6
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++.+.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 1 l~~~~l~~~~~~~~--------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g---- 66 (204)
T cd03250 1 ISVEDASFTWDSGE--------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG---- 66 (204)
T ss_pred CEEeEEEEecCCCC--------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC----
Confidence 36788888764210 001369999999999999999999999999999999999866 4589999998
Q ss_pred cccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCCCCCcC
Q 000860 730 QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRH-------ALVGSPGSFGL 802 (1250)
Q Consensus 730 ~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~-------~~v~~~~~~~l 802 (1250)
.++|++|++.++ ..|++||+.+... ...+ ...++.+.+++.+..+ +.... ....|
T Consensus 67 ------~i~~~~q~~~l~-~~t~~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l 128 (204)
T cd03250 67 ------SIAYVSQEPWIQ-NGTIRENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIGE-KGINL 128 (204)
T ss_pred ------EEEEEecCchhc-cCcHHHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceecC-CCCcC
Confidence 489999999887 5699999977421 1111 1233344444432221 11221 23469
Q ss_pred CHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHH-HHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 803 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-AVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 803 SgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~-~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
|||||||++|||+|+.+|++++|||||+|||+.+...+.+ +++++.++|+|||+++|++. .+.. +|++++|.+|
T Consensus 129 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G 203 (204)
T cd03250 129 SGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNG 203 (204)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCC
Confidence 9999999999999999999999999999999999999988 56766666899999999975 3444 9999999863
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=302.10 Aligned_cols=185 Identities=25% Similarity=0.396 Sum_probs=152.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc-cccceEEeeccccccCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF-QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~-~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++....+...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~ 104 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPK 104 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCCH
Confidence 47999999999999999999999864 99999999987532 234679999999888989999999988643221100
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
.. .+.+++++++.+||.+..++.+++ ||||||||++||||
T Consensus 105 -----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~a 144 (213)
T cd03259 105 -----------AE------------------------IRARVRELLELVGLEGLLNRYPHE-----LSGGQQQRVALARA 144 (213)
T ss_pred -----------HH------------------------HHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHH
Confidence 00 001256788999998877777654 99999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeec
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G 229 (1250)
|+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++. |+..++.+.+|++++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s-H~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVT-HDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe-cCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999998765577887764 5567788899999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=318.93 Aligned_cols=191 Identities=26% Similarity=0.376 Sum_probs=156.1
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHccCCC
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 2 ~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~ 78 (1250)
+||+|+|||||||++|+|.++.+ . +|+|.+||+++++. ..|+.+|||||+..+|. .||.+||.||..- .
T Consensus 381 VaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn~s--a- 452 (591)
T KOG0057|consen 381 VAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGNPS--A- 452 (591)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCCCC--c-
Confidence 79999999999999999999997 3 99999999998654 46889999999866665 6999999997321 1
Q ss_pred cchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHH
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~ 158 (1250)
.. + .....+++.. ..++ ...++++++|.||+++.. |||||||||++||
T Consensus 453 -s~-e--eV~e~~k~a~-------------------------~hd~--i~~l~~GY~T~VGerG~~-LSGGekQrvslaR 500 (591)
T KOG0057|consen 453 -SD-E--EVVEACKRAG-------------------------LHDV--ISRLPDGYQTLVGERGLM-LSGGEKQRVSLAR 500 (591)
T ss_pred -CH-H--HHHHHHHHcC-------------------------cHHH--HHhccccchhhHhhcccc-cccchHHHHHHHH
Confidence 11 1 1111111110 1111 235788999999997765 9999999999999
Q ss_pred HHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 159 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
|++.+|+|+++|||||+||.+++.++++.+.+.. .++|+|++.|. ......||+|++|++|++.+.|+++|+..
T Consensus 501 a~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~--l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 501 AFLKDAPILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHR--LDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHhcCCCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEec--chhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999999999999999853 48999998765 47788999999999999999999999875
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=342.12 Aligned_cols=208 Identities=21% Similarity=0.287 Sum_probs=166.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++++|+. ++++|+|+|++++|||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 322 ~i~~~~v~f~y~~------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~ 387 (547)
T PRK10522 322 TLELRNVTFAYQD------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ--PQSGEILLDGKPV 387 (547)
T ss_pred eEEEEEEEEEeCC------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEC
Confidence 6899999999852 2358999999999999999999999999999999999876 4589999999986
Q ss_pred Cc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHH
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTE 805 (1250)
Q Consensus 729 ~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgG 805 (1250)
.. ..+++.++||+|++.+++ .|++|| . .. ..++.++++++.+++....+...+...+.+||||
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n---~------~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgG 453 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFHLFD-QLLGPE---G------KP----ANPALVEKWLERLKMAHKLELEDGRISNLKLSKG 453 (547)
T ss_pred CCCCHHHHhhheEEEecChhHHH-Hhhccc---c------Cc----hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHH
Confidence 53 356788999999998775 477775 0 11 2234567888888887644321111113579999
Q ss_pred HHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEe
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 806 erqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 884 (1250)
||||++||||++++|++|+||||||+||+.++..+.+.+.+..+ .|+|+|+++|++ +....+|++++|++|+.+.+.
T Consensus 454 q~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 454 QKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999876543 589999999997 467899999999874444443
Q ss_pred CC
Q 000860 885 GK 886 (1250)
Q Consensus 885 g~ 886 (1250)
|.
T Consensus 532 ~~ 533 (547)
T PRK10522 532 GE 533 (547)
T ss_pred CC
Confidence 43
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=342.29 Aligned_cols=224 Identities=25% Similarity=0.371 Sum_probs=197.3
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.+..+|+++.++.. ++ +++++|+.|++||+.|++|+|||||||++|+|.|..+ +.+|++.++|.++
T Consensus 564 ~~~~~~L~k~y~~~-----------~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~--~t~G~a~i~g~~i 629 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGK-----------DG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK--PTSGEALIKGHDI 629 (885)
T ss_pred eEEEcceeeeecch-----------hh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc--CCcceEEEecCcc
Confidence 46677777766431 12 8999999999999999999999999999999999876 4589999999987
Q ss_pred Cc----ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCH
Q 000860 729 EQ----STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 729 ~~----~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSg 804 (1250)
.. ...++.+|||||+|.+++.+|.||++.+.++++ +.+..+.++.++.+++.++|.+.+++.++. +||
T Consensus 630 ~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~~-----ySg 701 (885)
T KOG0059|consen 630 TVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVRT-----YSG 701 (885)
T ss_pred ccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchhh-----CCC
Confidence 54 236778999999999999999999999999987 456667777899999999999999999876 999
Q ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEe
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884 (1250)
Q Consensus 805 Gerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~ 884 (1250)
|+|||+++|.||+.+|++++|||||+|+||.+++.++++++++.+.|+.||.|+|..+ |.-.+|||+.+|.+ |+..--
T Consensus 702 G~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~-G~l~ci 779 (885)
T KOG0059|consen 702 GNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVI-GQLRCI 779 (885)
T ss_pred cchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeec-CeeEEe
Confidence 9999999999999999999999999999999999999999999888889999999874 67789999999986 788888
Q ss_pred CCCCccchhHHHHhhh
Q 000860 885 GKLGVHSQIMIDYFQG 900 (1250)
Q Consensus 885 g~~~~~~~~~~~yf~~ 900 (1250)
|++ +++...|.+
T Consensus 780 Gs~----q~LKsrfG~ 791 (885)
T KOG0059|consen 780 GSP----QELKSRYGS 791 (885)
T ss_pred cCh----HHHHhhcCC
Confidence 886 677777754
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=309.99 Aligned_cols=191 Identities=24% Similarity=0.352 Sum_probs=158.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc-------ccceEEeeccccccCCCCCHHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-------VQRASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~ 73 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++..
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 128 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLE 128 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHH
Confidence 47999999999999999999999864 999999998875321 13579999999989989999999988654
Q ss_pred ccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchh
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKR 153 (1250)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqR 153 (1250)
..+... .+ ...+++++++.+||.+..++.+++ ||||||||
T Consensus 129 ~~~~~~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qr 168 (269)
T cd03294 129 VQGVPR-----------AE------------------------REERAAEALELVGLEGWEHKYPDE-----LSGGMQQR 168 (269)
T ss_pred hcCCCH-----------HH------------------------HHHHHHHHHHHcCCHhHhhCCccc-----CCHHHHHH
Confidence 321100 00 001256788999998877877765 99999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhh
Q 000860 154 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233 (1250)
Q Consensus 154 v~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~ 233 (1250)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++.++.|+|+|++. |+..++.+.+|++++|++|++++.|++++
T Consensus 169 v~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~t-H~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 247 (269)
T cd03294 169 VGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFIT-HDLDEALRLGDRIAIMKDGRLVQVGTPEE 247 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998765578888775 45667788999999999999999999887
Q ss_pred HH
Q 000860 234 VL 235 (1250)
Q Consensus 234 ~~ 235 (1250)
+.
T Consensus 248 ~~ 249 (269)
T cd03294 248 IL 249 (269)
T ss_pred HH
Confidence 64
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=289.02 Aligned_cols=166 Identities=33% Similarity=0.533 Sum_probs=142.4
Q ss_pred EEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc
Q 000860 651 TFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ 730 (1250)
Q Consensus 651 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~ 730 (1250)
+++|+++.++. ++.++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~ 68 (171)
T cd03228 2 EFKNVSFSYPG-----------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRD 68 (171)
T ss_pred EEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhh
Confidence 57788877632 11358999999999999999999999999999999999866 357999999987542
Q ss_pred ---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHH
Q 000860 731 ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 731 ---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGer 807 (1250)
..+++.++|++|++.+++ .|+.||+ ||||||
T Consensus 69 ~~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~ 102 (171)
T cd03228 69 LDLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQR 102 (171)
T ss_pred cCHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHH
Confidence 234567999999987765 5888765 899999
Q ss_pred HHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 808 qr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.. +|++++|++|
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g 170 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDG 170 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCC
Confidence 999999999999999999999999999999999999999854 799999999985 4544 9999999863
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=305.67 Aligned_cols=195 Identities=26% Similarity=0.403 Sum_probs=157.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc-ccceEEeeccccccCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++....+...
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 106 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSE 106 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccc
Confidence 47999999999999999999999864 999999999875332 24579999999888888999999988643221100
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
.. ...+ ....++++++.+||.+..++.+++ |||||||||+||||
T Consensus 107 ~~-------~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~a 150 (239)
T cd03296 107 RP-------PEAE------------------------IRAKVHELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARA 150 (239)
T ss_pred cC-------CHHH------------------------HHHHHHHHHHHcCChhhhhcChhh-----CCHHHHHHHHHHHH
Confidence 00 0000 001256788999998777776654 99999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|+.+|++|+|||||+|||+.++..+.+.|++++++.++|+|++.| +..++.+.+|++++|++|++++.|+++++.
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH-~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 151 LAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTH-DQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999999999999999987655788887754 467778899999999999999999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=311.50 Aligned_cols=192 Identities=26% Similarity=0.405 Sum_probs=156.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc-----cccceEEeecccc-ccCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF-----QVQRASAYIGQTD-NHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~-~~~~~~TV~e~l~f~~~~ 74 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.+|||+|++ ..+...||+||+.|+...
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 111 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN 111 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHH
Confidence 47999999999999999999999865 99999999988542 3457899999985 244457999999986533
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCc--cccccccCCCccccCccccch
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLD--LCSDTVVGSEMLRGVSGGQKK 152 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~~t~vg~~~~~~LSGGqkq 152 (1250)
.+... .+ ...+++++++.+||. +..|+.+. .|||||||
T Consensus 112 ~~~~~-----------~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~~-----~LSgGq~q 151 (287)
T PRK13637 112 LGLSE-----------EE------------------------IENRVKRAMNIVGLDYEDYKDKSPF-----ELSGGQKR 151 (287)
T ss_pred CCCCH-----------HH------------------------HHHHHHHHHHHcCCCchhhccCCcc-----cCCHHHHH
Confidence 21110 00 011366789999996 55666654 49999999
Q ss_pred hhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChh
Q 000860 153 RVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRA 232 (1250)
Q Consensus 153 Rv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~ 232 (1250)
|++|||||+.+|++|||||||+|||+.++.++.+.|++++++.++|+|+++ |+..++.++||+|++|++|++++.|+++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vt-Hd~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVS-HSMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999765578888775 4567778899999999999999999998
Q ss_pred hHHH
Q 000860 233 EVLE 236 (1250)
Q Consensus 233 ~~~~ 236 (1250)
++.+
T Consensus 231 ~~~~ 234 (287)
T PRK13637 231 EVFK 234 (287)
T ss_pred HHHh
Confidence 8743
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=315.64 Aligned_cols=191 Identities=29% Similarity=0.364 Sum_probs=159.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc--cccceEEeeccccccCCCCCHHHHHHHHHHccCCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF--QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~ 78 (1250)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 108 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS 108 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999865 99999999887432 24567999999998899999999998654322110
Q ss_pred cchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHH
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~ 158 (1250)
.. + ...+++++++.+||++..++.+++ ||||||||++|||
T Consensus 109 ~~-----------~------------------------~~~~~~~ll~~~~l~~~~~~~~~~-----LSgG~~qrv~la~ 148 (303)
T TIGR01288 109 TR-----------E------------------------IEAVIPSLLEFARLESKADVRVAL-----LSGGMKRRLTLAR 148 (303)
T ss_pred HH-----------H------------------------HHHHHHHHHHHCCChhHhcCchhh-----CCHHHHHHHHHHH
Confidence 00 0 001245678899999888888765 9999999999999
Q ss_pred HHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 159 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||+.+|++|||||||+|||+.++..+++.|+++++ .|+|+|++ +|+..++.++||++++|++|++++.|+++++.+
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~-sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLT-THFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEE-CCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999875 47888876 455778888999999999999999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=299.20 Aligned_cols=187 Identities=28% Similarity=0.385 Sum_probs=147.9
Q ss_pred cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc-------ccccceEEEEcCCCCCC
Q 000860 675 LQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-------STFARISGYVEQEDVHS 747 (1250)
Q Consensus 675 ~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-------~~~~~~~~yv~q~~~~~ 747 (1250)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccccchhhcceEEEEcCCCccc
Confidence 468999999999999999999999999999999999875 357999999986532 12346799999998877
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCCCCCcCCHHHHHHHHHHHHHhhCC
Q 000860 748 PQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHA-------LVGSPGSFGLSTEQRKRLTIAVELVANP 820 (1250)
Q Consensus 748 ~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~-------~v~~~~~~~lSgGerqr~~ia~~l~~~p 820 (1250)
..|++||+.+... ... +...++++.+++.+..+. ..+. ....||||||||++|||+|+.+|
T Consensus 92 -~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 92 -NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGE-RGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred -cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCccc-CCCcCCHHHHHHHHHHHHHhhCC
Confidence 5799999976421 111 123455566666443221 1111 23469999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHH--HHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeec
Q 000860 821 SIIFMDEPTSGLDARAAAIVMR--AVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 821 ~il~lDEPTsgLD~~~~~~i~~--~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
++++|||||+|||+.+...+++ .++.+.+.|+|+|+++|+++ .+ ..+|++++|.+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~ 216 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKD 216 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecC
Confidence 9999999999999999999998 66666666899999999985 34 57999999975
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=316.15 Aligned_cols=184 Identities=29% Similarity=0.429 Sum_probs=159.2
Q ss_pred EEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCc-ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHH
Q 000860 693 LVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKD 771 (1250)
Q Consensus 693 i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~ 771 (1250)
|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||+||+.|....+ ..+.+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999876 358999999987643 224567999999999999999999999876532 23344
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhC-
Q 000860 772 QRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT- 850 (1250)
Q Consensus 772 ~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~- 850 (1250)
+.+++++++++.++|.+..++.+. .||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPH-----QLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 556778999999999988887765 49999999999999999999999999999999999999999999998765
Q ss_pred CCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCCC
Q 000860 851 GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLG 888 (1250)
Q Consensus 851 g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~ 888 (1250)
|+|||++||++. ++...+|++++|++ |+++..|+.+
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~-G~i~~~g~~~ 186 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRK-GKIAQIGTPE 186 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 899999999985 67889999999985 7898888863
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=300.78 Aligned_cols=186 Identities=26% Similarity=0.340 Sum_probs=153.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccccceEEeeccccccCCCCCHHHHHHHHHHccCCCcc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGANDS 80 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~~ 80 (1250)
+++|+||||||||||+++|+|+.+|. +|+|.++|.++.. .++.++|++|++.+++.+||+||+.++...++...
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~- 105 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPK- 105 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHHHHHHHHHHHcCCCH-
Confidence 47999999999999999999999864 9999999988753 35679999999888888999999988654322100
Q ss_pred hhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHHH
Q 000860 81 FAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI 160 (1250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~al 160 (1250)
.. ....++++++.+||.+..++.+++ ||||||||++|||||
T Consensus 106 ----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl~la~al 146 (220)
T cd03293 106 ----------AE------------------------ARERAEELLELVGLSGFENAYPHQ-----LSGGMRQRVALARAL 146 (220)
T ss_pred ----------HH------------------------HHHHHHHHHHHcCChhhhhCCccc-----CCHHHHHHHHHHHHH
Confidence 00 001256788999998777776654 999999999999999
Q ss_pred hcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEec--CCeEEeecChh
Q 000860 161 VGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLS--DGYLVYQGPRA 232 (1250)
Q Consensus 161 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~--~G~i~~~G~~~ 232 (1250)
+.+|+++||||||+|||+.++..+.+.|+++.++.++|+|++. |+..++.+.+|++++|+ +|++++.++.+
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~s-H~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVT-HDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe-cCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999998665577888765 45667888999999999 79999887653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=304.13 Aligned_cols=200 Identities=24% Similarity=0.343 Sum_probs=157.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc----ccceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ----VQRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++.....
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~ 104 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQART 104 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhcc
Confidence 47999999999999999999999864 999999999875432 13569999999999999999999988754321
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
... ........... .....++++++.+||++..++.+++ |||||||||+|
T Consensus 105 ~~~-~~~~~~~~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~l 154 (236)
T cd03219 105 GSG-LLLARARREER------------------------EARERAEELLERVGLADLADRPAGE-----LSYGQQRRLEI 154 (236)
T ss_pred ccc-cccccccccHH------------------------HHHHHHHHHHHHcCccchhhCChhh-----CCHHHHHHHHH
Confidence 100 00000000000 0012367789999998877776654 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
||||+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++. |+..++.+++|++++|++|++++.|+++++.
T Consensus 155 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vs-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVE-HDMDVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-cCHHHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 9999999999999999999999999999999999876 578887764 5567788899999999999999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=303.43 Aligned_cols=191 Identities=26% Similarity=0.354 Sum_probs=157.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc------cccceEEeeccccccCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~ 74 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++.+++.+|++||+.++...
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~ 109 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEI 109 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999865 99999999987532 1256799999999999899999999886543
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 154 (1250)
++... .. ....++++++.+||.+..+..+. .|||||||||
T Consensus 110 ~~~~~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 149 (233)
T cd03258 110 AGVPK-----------AE------------------------IEERVLELLELVGLEDKADAYPA-----QLSGGQKQRV 149 (233)
T ss_pred cCCCH-----------HH------------------------HHHHHHHHHHHCCChhhhhcChh-----hCCHHHHHHH
Confidence 21100 00 00125678899999877776664 4999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhH
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 155 ~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~ 234 (1250)
+|||||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.| +.+++.+.+|++++|++|++++.|+.+++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH-~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITH-EMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999987655788887755 46677889999999999999999988775
Q ss_pred H
Q 000860 235 L 235 (1250)
Q Consensus 235 ~ 235 (1250)
.
T Consensus 229 ~ 229 (233)
T cd03258 229 F 229 (233)
T ss_pred h
Confidence 3
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=299.85 Aligned_cols=200 Identities=21% Similarity=0.240 Sum_probs=159.8
Q ss_pred eeeceEEEEe-----CCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCCcccccceEEEEcCCCCCCCCCC
Q 000860 677 LLSNVSGIFS-----PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVT 751 (1250)
Q Consensus 677 iL~~vs~~i~-----~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~lt 751 (1250)
.++|++++++ +||+++|+||||||||||+++|+|..+ +.+|+|.++|. .++|++|+....+.+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~---------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD---------TVSYKPQYIKADYEGT 77 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc---------eEEEecccccCCCCCC
Confidence 5667777765 799999999999999999999999876 35799999884 4899999987777899
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCC
Q 000860 752 IEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 831 (1250)
Q Consensus 752 v~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsg 831 (1250)
|+|++.+...... . .....+++++.+++.+..++.++. ||||||||++||++|+.+|++++|||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~~-----LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVPE-----LSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999876432110 1 122357889999998877777654 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeecCcEEE--EeCCCCccchhHHHHhhhC
Q 000860 832 LDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI--YGGKLGVHSQIMIDYFQGL 901 (1250)
Q Consensus 832 LD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~--~~g~~~~~~~~~~~yf~~~ 901 (1250)
||+.++..+.+.|+++++ .|+|||+++|++. .+...+|++++|.. +..+ ..+++....+.+..|++..
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 216 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEG-EPSVNGVANPPQSLRSGMNRFLKNL 216 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcC-CCeeEEEeCCchHHHHHHHHHHHHC
Confidence 999999999999999875 4899999999974 56678999999963 3333 2233332234567777765
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=271.20 Aligned_cols=190 Identities=25% Similarity=0.348 Sum_probs=162.4
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccccceEEeeccccccCCCCCHHHHHHHHHHccCCCcch
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGANDSF 81 (1250)
Q Consensus 2 ~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~~~ 81 (1250)
++++||||||||||||+++|+.+|. .|.|.+||+++... -...|.|.|++.++|=+||.||++|+.++++.++..
T Consensus 34 vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~ 108 (259)
T COG4525 34 VVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQ 108 (259)
T ss_pred EEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHHHHHHHHHHhcCCCHHH
Confidence 6899999999999999999999865 99999999988543 234689999999999999999999999998765321
Q ss_pred hhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHHHh
Q 000860 82 AAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIV 161 (1250)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~al~ 161 (1250)
+ .+++.+.+...||++..+..| -+|||||||||.|||||.
T Consensus 109 --------R---------------------------~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa 148 (259)
T COG4525 109 --------R---------------------------REIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALA 148 (259)
T ss_pred --------H---------------------------HHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhh
Confidence 0 123667899999998777665 459999999999999999
Q ss_pred cCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEec--CCeEEeecChhhHHHH
Q 000860 162 GPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLS--DGYLVYQGPRAEVLEF 237 (1250)
Q Consensus 162 ~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~--~G~i~~~G~~~~~~~~ 237 (1250)
.+|++|+||||+++||+.+++++.+.|.++.+..|+.++++ +|+.++..-+++++++|+ .|+|+..-+++-.+.|
T Consensus 149 ~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lli-TH~ieEAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 149 VEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLI-THDIEEALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred cCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEE-eccHHHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 99999999999999999999999999999888888887775 567889999999999998 5899988777754443
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=313.43 Aligned_cols=190 Identities=26% Similarity=0.409 Sum_probs=161.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc--cccceEEeeccccccCCCCCHHHHHHHHHHccCCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF--QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~ 78 (1250)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++... ..++.+||++|++.+++.+||.||+.+.+.+.+..
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~ 106 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK 106 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC
Confidence 47999999999999999999999865 99999999987532 34567999999999999999999999876543211
Q ss_pred cchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHH
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~ 158 (1250)
.. + ...+++++++.+||++..++.++. ||||||||++||+
T Consensus 107 ~~-----------~------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~la~ 146 (301)
T TIGR03522 107 GQ-----------L------------------------LKQRVEEMIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQ 146 (301)
T ss_pred HH-----------H------------------------HHHHHHHHHHHCCCchHhcCchhh-----CCHHHHHHHHHHH
Confidence 00 0 001256789999999888887765 9999999999999
Q ss_pred HHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 159 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||+++|++|+|||||+|||+.++..+++.|+++.+ ++|+|++ +|+.+++.++||||++|++|++++.|+.+++.+
T Consensus 147 al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~-sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 147 ALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILS-THIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEE-cCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999853 6787776 566788999999999999999999999998765
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=319.65 Aligned_cols=186 Identities=26% Similarity=0.413 Sum_probs=158.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc-------cccceEEeeccccccCCCCCHHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF-------QVQRASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~ 73 (1250)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++... ..++.++|++|+..+++.+||+||+.|+.+
T Consensus 26 ~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 102 (352)
T PRK11144 26 ITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA 102 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh
Confidence 47999999999999999999999865 99999999887431 235679999999999999999999988532
Q ss_pred ccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchh
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKR 153 (1250)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqR 153 (1250)
.. . +.+++++++.+||.+..+..+++ ||||||||
T Consensus 103 ~~----------------~-------------------------~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qR 136 (352)
T PRK11144 103 KS----------------M-------------------------VAQFDKIVALLGIEPLLDRYPGS-----LSGGEKQR 136 (352)
T ss_pred hh----------------h-------------------------HHHHHHHHHHcCCchhhhCCccc-----CCHHHHHH
Confidence 00 0 01256788999998877777654 99999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhh
Q 000860 154 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233 (1250)
Q Consensus 154 v~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~ 233 (1250)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++.++.++|+|++. |+..++.+++|++++|++|+++..|++++
T Consensus 137 valaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vT-Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 215 (352)
T PRK11144 137 VAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVS-HSLDEILRLADRVVVLEQGKVKAFGPLEE 215 (352)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEe-cCHHHHHHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999998876578887764 55678889999999999999999999988
Q ss_pred HHH
Q 000860 234 VLE 236 (1250)
Q Consensus 234 ~~~ 236 (1250)
+.+
T Consensus 216 i~~ 218 (352)
T PRK11144 216 VWA 218 (352)
T ss_pred HHh
Confidence 743
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=307.05 Aligned_cols=217 Identities=28% Similarity=0.400 Sum_probs=179.8
Q ss_pred CCeeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECC
Q 000860 646 HPLTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG 725 (1250)
Q Consensus 646 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g 725 (1250)
.+..+.|.++++.|.. ++++|+++|+++++|+++|++||||+||||++++|..... ..+|.|.+||
T Consensus 259 ~~g~v~F~~V~F~y~~------------~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD--~~sG~I~id~ 324 (497)
T COG5265 259 RLGAVAFINVSFAYDP------------RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD--VNSGSITIDG 324 (497)
T ss_pred ccceEEEEEEEeeccc------------cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC--CcCceEEEcc
Confidence 3456899999998853 5689999999999999999999999999999999998665 4589999999
Q ss_pred ccCC---cccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH---HcCCcccccccccCCCC
Q 000860 726 YPKE---QSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMS---LVELDSLRHALVGSPGS 799 (1250)
Q Consensus 726 ~~~~---~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~---~l~l~~~~~~~v~~~~~ 799 (1250)
+++. ....|+.||.||||..|| +.|+..|+.|+.. ..+.+++.+.++..-. .-.+.+..++.||+.+.
T Consensus 325 qdir~vtq~slR~aIg~VPQDtvLF-NDti~yni~ygr~-----~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 325 QDIRDVTQQSLRRAIGIVPQDTVLF-NDTIAYNIKYGRP-----DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred hhHHHhHHHHHHHHhCcCcccceeh-hhhHHHHHhccCc-----cccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 9864 356788999999999888 5699999987632 3345544433332110 11356667888988554
Q ss_pred CcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 800 ~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
.|||||||||+|||+++.+|+||++||+||+||..+++.++..|++.+ +|+|.+++.|+.| +.-.+|.|++|++ |
T Consensus 399 -klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrls--ti~~adeiivl~~-g 473 (497)
T COG5265 399 -KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLS--TIIDADEIIVLDN-G 473 (497)
T ss_pred -eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhh--hccCCceEEEeeC-C
Confidence 399999999999999999999999999999999999999999999986 6999999999986 4567899999985 8
Q ss_pred EEEEeCCC
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
++++.|+-
T Consensus 474 ~i~erg~h 481 (497)
T COG5265 474 RIVERGTH 481 (497)
T ss_pred EEEecCcH
Confidence 99999985
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=316.98 Aligned_cols=192 Identities=23% Similarity=0.350 Sum_probs=160.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCe----ecCcc---c---c-cceEEeeccccccCCCCCHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGW----ELDEF---Q---V-QRASAYIGQTDNHIAELTVRETLD 69 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~----~~~~~---~---~-~~~~~yv~Q~~~~~~~~TV~e~l~ 69 (1250)
+++|+||||||||||+++|+|+++|+ +|+|.++|. ++... . . ++.++||+|+..+++.+||+||+.
T Consensus 52 i~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~ 128 (382)
T TIGR03415 52 ICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVA 128 (382)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHH
Confidence 47999999999999999999999865 999999996 33221 1 1 257999999999999999999999
Q ss_pred HHHHccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccc
Q 000860 70 FAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGG 149 (1250)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 149 (1250)
|+....+.... +. +.+++++++.+||.+..+..+++ ||||
T Consensus 129 ~~~~~~g~~~~-----------~~------------------------~~~a~e~le~vgL~~~~~~~~~~-----LSgG 168 (382)
T TIGR03415 129 FGLEMQGMPEA-----------ER------------------------RKRVDEQLELVGLAQWADKKPGE-----LSGG 168 (382)
T ss_pred HHHHhcCCCHH-----------HH------------------------HHHHHHHHHHcCCchhhcCChhh-----CCHH
Confidence 98644321110 00 11356789999998887777654 9999
Q ss_pred cchhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeec
Q 000860 150 QKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229 (1250)
Q Consensus 150 qkqRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G 229 (1250)
|||||+|||||+.+|+||||||||+|||+.++.++.+.|+++.++.++|+|++. |+.+++.+++|+|++|++|+++..|
T Consensus 169 q~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iT-Hdl~e~~~l~DrI~vl~~G~iv~~g 247 (382)
T TIGR03415 169 MQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVS-HDLDEALKIGNRIAIMEGGRIIQHG 247 (382)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999998776678888874 5577888999999999999999999
Q ss_pred ChhhHHH
Q 000860 230 PRAEVLE 236 (1250)
Q Consensus 230 ~~~~~~~ 236 (1250)
+++++.+
T Consensus 248 ~~~ei~~ 254 (382)
T TIGR03415 248 TPEEIVL 254 (382)
T ss_pred CHHHHhh
Confidence 9988753
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=302.17 Aligned_cols=190 Identities=23% Similarity=0.369 Sum_probs=156.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc----ccceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ----VQRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+|||||||||||++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+.....+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG 104 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC
Confidence 47999999999999999999999865 999999998874322 23569999999999999999999988643221
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
... .+ ....++++++.+|+.+..++.+++ ||||||||++|
T Consensus 105 ~~~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~l 144 (232)
T cd03218 105 LSK-----------KE------------------------REEKLEELLEEFHITHLRKSKASS-----LSGGERRRVEI 144 (232)
T ss_pred CCH-----------HH------------------------HHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHHHH
Confidence 100 00 001256788899998877777654 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .++|+|++. |+.+++.+.+|++++|++|++++.|+.+++.
T Consensus 145 a~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 145 ARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITD-HNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999999999999999999999875 477877764 5567888999999999999999999987753
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=300.19 Aligned_cols=180 Identities=26% Similarity=0.349 Sum_probs=148.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc------cccceEEeeccccccCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~ 74 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~ 107 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRI 107 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHh
Confidence 47999999999999999999999864 99999999987432 1356799999999899999999999887543
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 154 (1250)
.+... .+ .+.+++++++.+||.+..++.+++ |||||||||
T Consensus 108 ~~~~~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv 147 (216)
T TIGR00960 108 IGVPP-----------RD------------------------ANERVSAALEKVGLEGKAHALPMQ-----LSGGEQQRV 147 (216)
T ss_pred cCCCH-----------HH------------------------HHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHH
Confidence 21100 00 011256788999998877777654 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeE
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYL 225 (1250)
Q Consensus 155 ~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i 225 (1250)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .++|+|++. |+.+.+.+++|++++|++|++
T Consensus 148 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vs-H~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVAT-HDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999865 477877764 556777789999999999974
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=303.97 Aligned_cols=199 Identities=28% Similarity=0.360 Sum_probs=157.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc------cccceEEeeccccccCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~ 74 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 105 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLG 105 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcc
Confidence 47999999999999999999999864 99999999987532 2356799999998889999999999875321
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 154 (1250)
.. ......... ... ....+++++++.+||.+..++.++ +|||||||||
T Consensus 106 ~~---~~~~~~~~~----------~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 153 (241)
T cd03256 106 RR---STWRSLFGL----------FPK--------------EEKQRALAALERVGLLDKAYQRAD-----QLSGGQQQRV 153 (241)
T ss_pred cc---hhhhhhccc----------CcH--------------HHHHHHHHHHHHcCChhhhCCCcc-----cCCHHHHHHH
Confidence 00 000000000 000 001235678899999877676654 4999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhH
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 155 ~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~ 234 (1250)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++.++|+|++. |+.+++.+++|++++|++|++++.|+++++
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~t-H~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSL-HQVDLAREYADRIVGLKDGRIVFDGPPAEL 232 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEeecCHHHh
Confidence 9999999999999999999999999999999999998765578887764 556778889999999999999999998876
Q ss_pred H
Q 000860 235 L 235 (1250)
Q Consensus 235 ~ 235 (1250)
.
T Consensus 233 ~ 233 (241)
T cd03256 233 T 233 (241)
T ss_pred h
Confidence 3
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=319.45 Aligned_cols=190 Identities=29% Similarity=0.465 Sum_probs=159.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc-------cccceEEeeccccccCCCCCHHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF-------QVQRASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~ 73 (1250)
+++|+|||||||||||++|+|+++|+ +|+|.++|.++... ..++.++|++|++.+++.+||+||+.|+..
T Consensus 25 i~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~ 101 (354)
T TIGR02142 25 VTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMK 101 (354)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHHHHHHHhh
Confidence 47999999999999999999999864 99999999987421 235679999999999999999999988643
Q ss_pred ccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchh
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKR 153 (1250)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqR 153 (1250)
... . .+ .+.+++++++.+||.+..++.+.+ ||||||||
T Consensus 102 ~~~--~-----------~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGqkqR 139 (354)
T TIGR02142 102 RAR--P-----------SE------------------------RRISFERVIELLGIGHLLGRLPGR-----LSGGEKQR 139 (354)
T ss_pred ccC--h-----------hH------------------------HHHHHHHHHHHcCChhHhcCChhh-----CCHHHHHH
Confidence 110 0 00 011256789999998877877654 99999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhh
Q 000860 154 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233 (1250)
Q Consensus 154 v~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~ 233 (1250)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++.++.++|+|++. |+.+++..++|++++|++|+++..|++++
T Consensus 140 valAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivt-H~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (354)
T TIGR02142 140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVS-HSLQEVLRLADRVVVLEDGRVAAAGPIAE 218 (354)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHHhCCEEEEEeCCEEEEECCHHH
Confidence 99999999999999999999999999999999999998775578887775 55678888999999999999999999888
Q ss_pred HHH
Q 000860 234 VLE 236 (1250)
Q Consensus 234 ~~~ 236 (1250)
+.+
T Consensus 219 ~~~ 221 (354)
T TIGR02142 219 VWA 221 (354)
T ss_pred Hhc
Confidence 643
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=309.87 Aligned_cols=191 Identities=22% Similarity=0.339 Sum_probs=155.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCc-------ccccceEEeecccc-ccCCCCCHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDE-------FQVQRASAYIGQTD-NHIAELTVRETLDFAA 72 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~-------~~~~~~~~yv~Q~~-~~~~~~TV~e~l~f~~ 72 (1250)
+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. ...++.++||+|++ ..+...||+||+.|+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~ 111 (290)
T PRK13634 35 YVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGP 111 (290)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHH
Confidence 47999999999999999999999865 9999999998742 12356799999985 2344579999999875
Q ss_pred HccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCc-cccccccCCCccccCccccc
Q 000860 73 RCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLD-LCSDTVVGSEMLRGVSGGQK 151 (1250)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqk 151 (1250)
...+.... + ..++++++++.+||. +..++.+.. ||||||
T Consensus 112 ~~~~~~~~-----------~------------------------~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq~ 151 (290)
T PRK13634 112 MNFGVSEE-----------D------------------------AKQKAREMIELVGLPEELLARSPFE-----LSGGQM 151 (290)
T ss_pred HHcCCCHH-----------H------------------------HHHHHHHHHHHCCCChhhhhCCccc-----CCHHHH
Confidence 43221100 0 011367789999996 556766654 999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecCh
Q 000860 152 KRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPR 231 (1250)
Q Consensus 152 qRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~ 231 (1250)
|||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|.|+|++. |+..++.+.+|||++|++|++++.|++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiit-Hd~~~~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVT-HSMEDAARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999776678888774 556778889999999999999999998
Q ss_pred hhHH
Q 000860 232 AEVL 235 (1250)
Q Consensus 232 ~~~~ 235 (1250)
+++.
T Consensus 231 ~~~~ 234 (290)
T PRK13634 231 REIF 234 (290)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=321.33 Aligned_cols=194 Identities=27% Similarity=0.423 Sum_probs=160.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHccCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~ 77 (1250)
+++|+||||||||||||+|+|+++|. +|+|.++|.++... ..++.++||+|+..+++.+||+||+.++......
T Consensus 31 iv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~ 107 (402)
T PRK09536 31 LVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS 107 (402)
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcc
Confidence 47999999999999999999999865 99999999987542 3467899999998888899999999885321100
Q ss_pred CcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHH
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA 157 (1250)
... .... ....+++++++.+||.+..++.+.+ |||||||||+||
T Consensus 108 ~~~------~~~~-------------------------~~~~~v~~~le~vgl~~~~~~~~~~-----LSgGerQRv~IA 151 (402)
T PRK09536 108 RFD------TWTE-------------------------TDRAAVERAMERTGVAQFADRPVTS-----LSGGERQRVLLA 151 (402)
T ss_pred ccc------CCCH-------------------------HHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHHH
Confidence 000 0000 0012367889999999888877654 999999999999
Q ss_pred HHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 158 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|||+++|++|||||||+|||+.++.++++.|+++++ .++|+|++ +|+.+++.+++||+++|++|++++.|+++++.
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIiv-sHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAA-IHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999986 47888876 45678888999999999999999999998864
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=314.69 Aligned_cols=188 Identities=26% Similarity=0.353 Sum_probs=158.3
Q ss_pred EeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc-ccceEEeeccccccCCCCCHHHHHHHHHHccCCCcchh
Q 000860 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAELTVRETLDFAARCQGANDSFA 82 (1250)
Q Consensus 4 ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~~~~ 82 (1250)
|+|||||||||||++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++.+||+||+.|+.+.++....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~-- 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRA-- 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHH--
Confidence 68999999999999999999865 999999999875432 356799999999999999999999997543211100
Q ss_pred hHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHHHhc
Q 000860 83 AYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVG 162 (1250)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~al~~ 162 (1250)
+ .+.+++++++.+||.+..++.+. +|||||||||+|||||+.
T Consensus 76 ---------~------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qRvalaraL~~ 117 (325)
T TIGR01187 76 ---------E------------------------IKPRVLEALRLVQLEEFADRKPH-----QLSGGQQQRVALARALVF 117 (325)
T ss_pred ---------H------------------------HHHHHHHHHHHcCCcchhcCChh-----hCCHHHHHHHHHHHHHHh
Confidence 0 00125678999999887777665 499999999999999999
Q ss_pred CCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 163 PRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 163 ~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
+|+++||||||+|||+.++..+.+.|+++.++.++|+|++. |+..++.+++|+|++|++|+++..|+++++.
T Consensus 118 ~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivT-Hd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 118 KPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVT-HDQEEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999998776678888774 5567888999999999999999999998874
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=296.84 Aligned_cols=185 Identities=25% Similarity=0.384 Sum_probs=153.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc-ccceEEeeccccccCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++..||+||+.++....+...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~ 104 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPK 104 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhcCCCH
Confidence 47899999999999999999999864 999999999875322 24579999999888888999999988653321100
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
.+ .+++++++++.+||.+..+..+++ ||||||||++||||
T Consensus 105 -----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr~~lara 144 (213)
T cd03301 105 -----------DE------------------------IDERVREVAELLQIEHLLDRKPKQ-----LSGGQRQRVALGRA 144 (213)
T ss_pred -----------HH------------------------HHHHHHHHHHHcCCHHHHhCChhh-----CCHHHHHHHHHHHH
Confidence 00 011256788999998877777654 99999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeec
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G 229 (1250)
|+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.| +..++.+.+|++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH-~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTH-DQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999987655788888754 467778899999999999998876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=296.86 Aligned_cols=177 Identities=25% Similarity=0.352 Sum_probs=146.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccccceEEeeccccc-cCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDN-HIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~-~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
+++|+|||||||||||++|+|+++|. +|+|.++|.++.....++.++|++|++. .+...||+||+.++..... .
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~--~ 102 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD--A 102 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC--c
Confidence 47999999999999999999999864 9999999998754344567999999863 3456799999987532110 0
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
.+.+++++++.+||.+..++.+++ ||||||||++||||
T Consensus 103 -------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~lara 140 (205)
T cd03226 103 -------------------------------------GNEQAETVLKDLDLYALKERHPLS-----LSGGQKQRLAIAAA 140 (205)
T ss_pred -------------------------------------cHHHHHHHHHHcCCchhcCCCchh-----CCHHHHHHHHHHHH
Confidence 001256788999998877777654 99999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEE
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLV 226 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~ 226 (1250)
|+.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++. |+..++.+++|++++|++|+++
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~s-H~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 141 LLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVIT-HDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999999875 478888775 4566777899999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=309.74 Aligned_cols=202 Identities=23% Similarity=0.339 Sum_probs=159.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCc-------ccccceEEeecccc-ccCCCCCHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDE-------FQVQRASAYIGQTD-NHIAELTVRETLDFAA 72 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~-------~~~~~~~~yv~Q~~-~~~~~~TV~e~l~f~~ 72 (1250)
+++|+||||||||||+++|+|+++|+ +|+|+++|.++.. ...++.++||+|++ ..+...||.||+.|+.
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~ 110 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGP 110 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHH
Confidence 47999999999999999999999865 9999999998742 12466799999985 2333469999999875
Q ss_pred HccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCc-cccccccCCCccccCccccc
Q 000860 73 RCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLD-LCSDTVVGSEMLRGVSGGQK 151 (1250)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqk 151 (1250)
...+... .+ .+.++.++++.+||. +..++.+. .||||||
T Consensus 111 ~~~~~~~-----------~~------------------------~~~~~~~~l~~~~L~~~~~~~~~~-----~LSgGqk 150 (288)
T PRK13643 111 QNFGIPK-----------EK------------------------AEKIAAEKLEMVGLADEFWEKSPF-----ELSGGQM 150 (288)
T ss_pred HHcCCCH-----------HH------------------------HHHHHHHHHHHcCCChhhccCCcc-----cCCHHHH
Confidence 4322110 00 011356788899995 45565554 4999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecCh
Q 000860 152 KRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPR 231 (1250)
Q Consensus 152 qRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~ 231 (1250)
||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|+|+++ |+..++.+++|+|++|++|+++++|++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vt-Hd~~~~~~~~dri~~l~~G~i~~~g~~ 228 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVT-HLMDDVADYADYVYLLEKGHIISCGTP 228 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEe-cCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999875 478888775 456778889999999999999999999
Q ss_pred hhHHH---HHHhCCCCCCC
Q 000860 232 AEVLE---FFESLGFRLPP 247 (1250)
Q Consensus 232 ~~~~~---~f~~lG~~~~~ 247 (1250)
+++.+ .+...|+.+|.
T Consensus 229 ~~~~~~~~~~~~~~~~~p~ 247 (288)
T PRK13643 229 SDVFQEVDFLKAHELGVPK 247 (288)
T ss_pred HHHHcCHHHHHHcCCCCCh
Confidence 98743 33445555444
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=296.92 Aligned_cols=180 Identities=26% Similarity=0.388 Sum_probs=150.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc-cccceEEeeccccccCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF-QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~-~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
+++|+||||||||||+++|+|+.+|. +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++....+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-- 102 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGI-- 102 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcCC--
Confidence 47999999999999999999999864 99999999877432 2356799999998889899999999886432110
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
.+.+++++++.+||.+..++.+++ |||||||||+||||
T Consensus 103 -------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~a 140 (208)
T cd03268 103 -------------------------------------RKKRIDEVLDVVGLKDSAKKKVKG-----FSLGMKQRLGIALA 140 (208)
T ss_pred -------------------------------------cHHHHHHHHHHcCCHHHHhhhHhh-----CCHHHHHHHHHHHH
Confidence 001256678899998877776654 99999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeec
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G 229 (1250)
|+.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|++. |+..++.+.+|++++|++|++++.|
T Consensus 141 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~t-H~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 141 LLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISS-HLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEc-CCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999876 578887774 5567777899999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=302.15 Aligned_cols=191 Identities=26% Similarity=0.389 Sum_probs=156.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHccCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~ 77 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++....+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 105 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW 105 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC
Confidence 47999999999999999999999864 99999999887532 2356799999999999899999999886543211
Q ss_pred CcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCcc--ccccccCCCccccCccccchhhH
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDL--CSDTVVGSEMLRGVSGGQKKRVT 155 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~~t~vg~~~~~~LSGGqkqRv~ 155 (1250)
.. .+ ....++++++.+||.+ ..++.+. .|||||||||+
T Consensus 106 ~~-----------~~------------------------~~~~~~~~l~~l~l~~~~~~~~~~~-----~LS~G~~qrv~ 145 (242)
T cd03295 106 PK-----------EK------------------------IRERADELLALVGLDPAEFADRYPH-----ELSGGQQQRVG 145 (242)
T ss_pred CH-----------HH------------------------HHHHHHHHHHHcCCCcHHHHhcChh-----hCCHHHHHHHH
Confidence 00 00 0112567889999975 5555544 49999999999
Q ss_pred HHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 156 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 156 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|||||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++.| +..++.+.+|++++|++|++++.|+++++.
T Consensus 146 laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH-~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 146 VARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTH-DIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEec-CHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999999987655788887755 456778899999999999999999887763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=345.79 Aligned_cols=192 Identities=28% Similarity=0.412 Sum_probs=153.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHccCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~ 77 (1250)
.+||+||||||||||+++|+|++ |. +|+|.+||.++++. ..++.++||+|++.+|. .|++|||.++..
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~~---- 448 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGNP---- 448 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCCC----
Confidence 37999999999999999999999 65 89999999988654 46789999999977765 699999988621
Q ss_pred CcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHH
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA 157 (1250)
+... .++... .+.+ ..++.+ -.|+++.||.||+++ ..||||||||++||
T Consensus 449 ~~~~----eei~~a---------------l~~a---------~l~~~i--~~lp~G~dT~vge~G-~~LSGGQrQRialA 497 (588)
T PRK11174 449 DASD----EQLQQA---------------LENA---------WVSEFL--PLLPQGLDTPIGDQA-AGLSVGQAQRLALA 497 (588)
T ss_pred CCCH----HHHHHH---------------HHHh---------CHHHHH--HhcccccccccccCC-CCCCHHHHHHHHHH
Confidence 1111 011000 0000 011222 236778899999875 45999999999999
Q ss_pred HHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 158 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
|||+++|+||+||||||+||+.++.+|.+.|+++.+ ++|+|++.|++ +..+.+|+|++|++|++++.|+++++.+
T Consensus 498 RAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIiItHrl--~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 498 RALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQL--EDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCh--HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 999999999999999999999999999999998753 68888876664 6678899999999999999999999864
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=296.51 Aligned_cols=183 Identities=24% Similarity=0.360 Sum_probs=151.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccccceEEeeccccccCCCCCHHHHHHHHHHccCCCcc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGANDS 80 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~~ 80 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.. ..++.++|++|++.+++.+||+||+.+....++....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 103 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKE 103 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcCCChH
Confidence 47999999999999999999999864 9999999987753 3456799999999889999999999886543221100
Q ss_pred hhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHHH
Q 000860 81 FAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI 160 (1250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~al 160 (1250)
+ .+..++++++.+||++..++.+++ ||||||||++||+||
T Consensus 104 -----------~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~la~al 143 (210)
T cd03269 104 -----------E------------------------ARRRIDEWLERLELSEYANKRVEE-----LSKGNQQKVQFIAAV 143 (210)
T ss_pred -----------H------------------------HHHHHHHHHHHcCChHHHhCcHhh-----CCHHHHHHHHHHHHH
Confidence 0 011256788999998777776654 999999999999999
Q ss_pred hcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeec
Q 000860 161 VGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229 (1250)
Q Consensus 161 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G 229 (1250)
+.+|++++|||||+|||+.++..+.+.|+++.++ ++|+|++ +|+..++.+++|++++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~-~~tii~~-sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILS-THQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEE-CCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999999998754 7788776 45567778899999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=298.97 Aligned_cols=180 Identities=26% Similarity=0.390 Sum_probs=147.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc-------ccceEEeeccccccCCCCCHHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-------VQRASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~-------~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~ 73 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 108 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL 108 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHh
Confidence 47999999999999999999999864 999999999875321 24579999999989999999999998754
Q ss_pred ccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchh
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKR 153 (1250)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqR 153 (1250)
.++... .+ .+..++++++.+||.+..++.+++ ||||||||
T Consensus 109 ~~~~~~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr 148 (218)
T cd03255 109 LAGVPK-----------KE------------------------RRERAEELLERVGLGDRLNHYPSE-----LSGGQQQR 148 (218)
T ss_pred hcCCCH-----------HH------------------------HHHHHHHHHHHcCCchhhhcChhh-----cCHHHHHH
Confidence 322100 00 011256788999998777776654 99999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeE
Q 000860 154 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYL 225 (1250)
Q Consensus 154 v~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i 225 (1250)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++.++|+|++.|+ ..++. .+|++++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD-PELAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC-HHHHh-hhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999999876457888887655 45554 8999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=299.11 Aligned_cols=197 Identities=23% Similarity=0.375 Sum_probs=154.9
Q ss_pred eeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCcc
Q 000860 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 727 (1250)
Q Consensus 648 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 727 (1250)
..++++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 38 ~~l~i~nls~~---------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g-- 98 (282)
T cd03291 38 NNLFFSNLCLV---------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG-- 98 (282)
T ss_pred CeEEEEEEEEe---------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC--
Confidence 35899999873 1248999999999999999999999999999999999876 3579999987
Q ss_pred CCcccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCCCCC
Q 000860 728 KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRH-------ALVGSPGSF 800 (1250)
Q Consensus 728 ~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~-------~~v~~~~~~ 800 (1250)
.++|++|++.+++. ||+||+.+.... .. ..+.++++.+++.+..+ +.++. ...
T Consensus 99 --------~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~-~~~ 158 (282)
T cd03291 99 --------RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGE-GGI 158 (282)
T ss_pred --------EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecC-CCC
Confidence 28999999887774 999999764211 11 11233444444433222 22221 224
Q ss_pred cCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHH-HHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCc
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV-RNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 801 ~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.+ +++. ++.|||+++|++. .+ ..+|++++|++ |
T Consensus 159 ~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~-G 234 (282)
T cd03291 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHE-G 234 (282)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999998864 5554 5799999999985 34 68999999985 7
Q ss_pred EEEEeCCC
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
++++.|+.
T Consensus 235 ~i~~~g~~ 242 (282)
T cd03291 235 SSYFYGTF 242 (282)
T ss_pred EEEEECCH
Confidence 88888875
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=335.70 Aligned_cols=210 Identities=17% Similarity=0.248 Sum_probs=168.5
Q ss_pred eeEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCcc
Q 000860 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 727 (1250)
Q Consensus 648 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~ 727 (1250)
..++++|+++.|+... ..++++|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.+
T Consensus 336 ~~i~~~~v~f~y~~~~--------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~--p~~G~i~~~g~~ 405 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE--------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI--PQEGEILLDGAA 405 (555)
T ss_pred ceEEEEEEEEEeCCCC--------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 3689999999985321 012468999999999999999999999999999999999776 458999999998
Q ss_pred CCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCccccccccc-CCCCCcCC
Q 000860 728 KEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVG-SPGSFGLS 803 (1250)
Q Consensus 728 ~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~-~~~~~~lS 803 (1250)
+.. ..+++.++||+|++.++. .|+++|+ . + +..++.++++++.+++.+..+.... ......||
T Consensus 406 i~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n~------~-~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 406 VSADSRDDYRDLFSAIFADFHLFD-DLIGPDE------G-E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred CCCCCHHHHHhhCcEEccChhhhh-hhhhccc------c-c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 754 356788999999988775 4788763 1 1 1223457788899998776544322 11224699
Q ss_pred HHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHH-HHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEE
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVR-NTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882 (1250)
Q Consensus 804 gGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~-~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 882 (1250)
||||||++|||+|+++|+|++||||||+||+.++..+.+.+. .+...|+|+|+++|+++ ..+.+|+|++|++ |+++
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~-G~i~ 549 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAA-GCIV 549 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999988664 45556899999999974 5689999999986 6766
Q ss_pred E
Q 000860 883 Y 883 (1250)
Q Consensus 883 ~ 883 (1250)
.
T Consensus 550 ~ 550 (555)
T TIGR01194 550 K 550 (555)
T ss_pred E
Confidence 4
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=298.04 Aligned_cols=188 Identities=30% Similarity=0.446 Sum_probs=155.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc--cccceEEeeccccccCCCCCHHHHHHHHHHccCCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF--QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~ 78 (1250)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++.+++..||+||+.+.....+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP 106 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC
Confidence 47999999999999999999999864 99999999987432 34567999999988888999999998865432211
Q ss_pred cchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHH
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~ 158 (1250)
.. + .+..++++++.+||.+..++.+++ ||||||||++|||
T Consensus 107 ~~-----------~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~ 146 (220)
T cd03263 107 KS-----------E------------------------IKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAI 146 (220)
T ss_pred HH-----------H------------------------HHHHHHHHHHHcCCHHHHhChhhh-----CCHHHHHHHHHHH
Confidence 00 0 001256788999998877777654 9999999999999
Q ss_pred HHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhH
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 159 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~ 234 (1250)
||+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++ +|+...+.+.+|++++|++|++++.|+++++
T Consensus 147 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~-sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILT-THSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEE-cCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999999864 4777776 4556677789999999999999999987764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-32 Score=310.75 Aligned_cols=194 Identities=22% Similarity=0.244 Sum_probs=157.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc------cccceEEeecccc--ccCCCCCHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTD--NHIAELTVRETLDFAA 72 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~------~~~~~~~yv~Q~~--~~~~~~TV~e~l~f~~ 72 (1250)
+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... ..++.++||+|++ .+++.+||.||+.+..
T Consensus 49 ~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l 125 (331)
T PRK15079 49 TLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPL 125 (331)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHH
Confidence 47999999999999999999999864 99999999987543 1356799999996 5888999999998865
Q ss_pred HccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCc-cccccccCCCccccCccccc
Q 000860 73 RCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLD-LCSDTVVGSEMLRGVSGGQK 151 (1250)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqk 151 (1250)
........ ..+ .++.++++++.+||. +..++.+ .+||||||
T Consensus 126 ~~~~~~~~---------~~~------------------------~~~~~~~~l~~vgl~~~~~~~~p-----~~LSgG~~ 167 (331)
T PRK15079 126 RTYHPKLS---------RQE------------------------VKDRVKAMMLKVGLLPNLINRYP-----HEFSGGQC 167 (331)
T ss_pred HHhccCCC---------HHH------------------------HHHHHHHHHHHcCCChHHhcCCc-----ccCCHHHH
Confidence 43210000 000 011356789999994 4455554 45999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecCh
Q 000860 152 KRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPR 231 (1250)
Q Consensus 152 qRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~ 231 (1250)
|||+|||||+.+|++||+||||+|||+.++.++++.|+++.++.+.|+|++ +|+...+.+++|+|++|.+|++++.|+.
T Consensus 168 QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~i-THdl~~~~~~~dri~vl~~G~ive~g~~ 246 (331)
T PRK15079 168 QRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFI-AHDLAVVKHISDRVLVMYLGHAVELGTY 246 (331)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999999977667787776 5667888889999999999999999999
Q ss_pred hhHHH
Q 000860 232 AEVLE 236 (1250)
Q Consensus 232 ~~~~~ 236 (1250)
+++.+
T Consensus 247 ~~i~~ 251 (331)
T PRK15079 247 DEVYH 251 (331)
T ss_pred HHHHc
Confidence 88753
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-32 Score=306.36 Aligned_cols=190 Identities=23% Similarity=0.354 Sum_probs=157.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeecccc-ccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTD-NHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~-~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++ ..++..||+|||.|+....+
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~ 111 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG 111 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC
Confidence 47999999999999999999999865 99999999987532 2456799999986 46778899999988653221
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
.... + ..++++++++.+||.+..+..+++ ||||||||++|
T Consensus 112 ~~~~-----------~------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LSgGq~qrv~l 151 (279)
T PRK13650 112 IPHE-----------E------------------------MKERVNEALELVGMQDFKEREPAR-----LSGGQKQRVAI 151 (279)
T ss_pred CCHH-----------H------------------------HHHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHHHH
Confidence 1100 0 011356789999998877777654 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
||||+.+|++|+|||||+|||+.++..+++.|++++++.|+|+|++.|+ ..++ ..+|++++|++|+++..|+++++.
T Consensus 152 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~-~~~~-~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 152 AGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD-LDEV-ALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999976558898887655 4555 579999999999999999988765
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-32 Score=299.68 Aligned_cols=186 Identities=21% Similarity=0.294 Sum_probs=150.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc------c-cceEEeeccccccCCCCCHHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ------V-QRASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~-~~~~~yv~Q~~~~~~~~TV~e~l~f~~~ 73 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.... . ++.++|++|++.+++.+||+||+.+...
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 113 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLL 113 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHH
Confidence 47999999999999999999999864 999999999875432 1 2569999999888999999999988653
Q ss_pred ccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchh
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKR 153 (1250)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqR 153 (1250)
..+... .+ .+.+++++++.+||++..++.++ .||||||||
T Consensus 114 ~~~~~~-----------~~------------------------~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~qr 153 (233)
T PRK11629 114 IGKKKP-----------AE------------------------INSRALEMLAAVGLEHRANHRPS-----ELSGGERQR 153 (233)
T ss_pred hcCCCH-----------HH------------------------HHHHHHHHHHHcCCchhhhCChh-----hCCHHHHHH
Confidence 221100 00 01135678999999877776654 499999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecCh
Q 000860 154 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPR 231 (1250)
Q Consensus 154 v~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~ 231 (1250)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|+|++.|+ .+++.. +|++++|++|++++.|+.
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~-~~~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD-LQLAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHh-hCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999999876557888887554 455554 589999999999988763
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-32 Score=302.95 Aligned_cols=198 Identities=24% Similarity=0.323 Sum_probs=155.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc------cccceEEeeccccccCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~ 74 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 106 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG 106 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccc
Confidence 47999999999999999999999864 99999999887432 1356799999998899999999999775311
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 154 (1250)
.. ... ........ . ..+.+++++++.+||.+..+..+. .|||||||||
T Consensus 107 ~~--~~~-~~~~~~~~----------~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv 154 (243)
T TIGR02315 107 YK--PTW-RSLLGRFS----------E--------------EDKERALSALERVGLADKAYQRAD-----QLSGGQQQRV 154 (243)
T ss_pred cc--cch-hhhhcccc----------H--------------HHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHHHHH
Confidence 00 000 00000000 0 001235678899999877776654 4999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhH
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 155 ~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~ 234 (1250)
+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++.++|+|++. |+...+.+++|++++|++|++++.|+++++
T Consensus 155 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~t-H~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 155 AIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINL-HQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 9999999999999999999999999999999999998765577887764 556777789999999999999999988765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-32 Score=304.84 Aligned_cols=189 Identities=24% Similarity=0.298 Sum_probs=155.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccc-cCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDN-HIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~-~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++. .++..||.||+.|+....+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~ 109 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG 109 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC
Confidence 47999999999999999999999865 99999999987532 23567999999852 4566899999988643221
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
... .+ .+.+++++++.+||.+..++.+.+ |||||||||+|
T Consensus 110 ~~~-----------~~------------------------~~~~~~~~l~~~~L~~~~~~~~~~-----LSgG~~qrv~l 149 (274)
T PRK13647 110 LDK-----------DE------------------------VERRVEEALKAVRMWDFRDKPPYH-----LSYGQKKRVAI 149 (274)
T ss_pred CCH-----------HH------------------------HHHHHHHHHHHCCCHHHhcCChhh-----CCHHHHHHHHH
Confidence 100 00 011256789999998877877754 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~ 234 (1250)
||||+.+|++|||||||+|||+.++.++.+.|++++++ +.|+|++. |+.+.+.+.+|++++|++|++++.|+++++
T Consensus 150 araL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~t-H~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 150 AGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVAT-HDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999998764 78888774 556777889999999999999999998654
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-32 Score=304.55 Aligned_cols=192 Identities=20% Similarity=0.339 Sum_probs=157.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc------cccceEEeeccccccCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~ 74 (1250)
+++|+|||||||||||++|+|+++|. +|+|.++|.++... ..++.++|++|+..+++.+||.||+.++...
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~ 111 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLRE 111 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999864 99999999887532 1345799999998889989999999876422
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 154 (1250)
.... . ..+ .+..++++++.+||.+..++.+++ |||||||||
T Consensus 112 ~~~~-~---------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv 152 (269)
T PRK11831 112 HTQL-P---------APL------------------------LHSTVMMKLEAVGLRGAAKLMPSE-----LSGGMARRA 152 (269)
T ss_pred ccCC-C---------HHH------------------------HHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHH
Confidence 1000 0 000 001256678999998877777654 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhH
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 155 ~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~ 234 (1250)
+|||||+.+|+++||||||+|||+.++..+.+.|+++.++.++|+|++. |+..++.+.+|++++|++|++++.|+++++
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivs-H~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVS-HDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEe-cCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998765577888775 556778889999999999999999998876
Q ss_pred H
Q 000860 235 L 235 (1250)
Q Consensus 235 ~ 235 (1250)
.
T Consensus 232 ~ 232 (269)
T PRK11831 232 Q 232 (269)
T ss_pred h
Confidence 4
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-32 Score=298.44 Aligned_cols=188 Identities=27% Similarity=0.432 Sum_probs=152.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc----ccceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ----VQRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++.....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 104 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR 104 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC
Confidence 47999999999999999999999865 999999998875322 24569999999999999999999988643221
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHh-CCccccccccCCCccccCccccchhhH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVL-GLDLCSDTVVGSEMLRGVSGGQKKRVT 155 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqkqRv~ 155 (1250)
.. + . ...++.+++.+ ++++..++.+.+ ||||||||++
T Consensus 105 --~~------~---~--------------------------~~~~~~~l~~~~~l~~~~~~~~~~-----LS~G~~qrv~ 142 (222)
T cd03224 105 --RA------K---R--------------------------KARLERVYELFPRLKERRKQLAGT-----LSGGEQQMLA 142 (222)
T ss_pred --ch------h---H--------------------------HHHHHHHHHHHHhhhhhhhCchhh-----CCHHHHHHHH
Confidence 00 0 0 01134556666 466666666544 9999999999
Q ss_pred HHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 156 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 156 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|||||+.+|++++|||||+|||+.++..+++.|+++.+ .++|+|++. |+..++.+.+|++++|++|++++.|+.+++.
T Consensus 143 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVE-QNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999999999999999875 477888775 5567788899999999999999999887653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-32 Score=297.41 Aligned_cols=184 Identities=29% Similarity=0.453 Sum_probs=151.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc--cccceEEeeccccccCCCCCHHHHHHHHHHccCCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF--QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~ 78 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 109 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLK 109 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCC
Confidence 47999999999999999999999865 99999999987532 34567999999998899899999998764332110
Q ss_pred cchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHH
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~ 158 (1250)
. .+ ...+++++++.+||.+..+..+++ ||||||||++|||
T Consensus 110 ~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~lar 149 (218)
T cd03266 110 G-----------DE------------------------LTARLEELADRLGMEELLDRRVGG-----FSTGMRQKVAIAR 149 (218)
T ss_pred H-----------HH------------------------HHHHHHHHHHHcCCHHHHhhhhhh-----cCHHHHHHHHHHH
Confidence 0 00 011356789999998877776654 9999999999999
Q ss_pred HHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeec
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229 (1250)
Q Consensus 159 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G 229 (1250)
||+.+|++|+|||||+|||+.++..+.+.|+++.+ .++|+|++. |+..++...+|++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~t-H~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFST-HIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999865 478888775 4567788899999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-32 Score=299.83 Aligned_cols=189 Identities=23% Similarity=0.330 Sum_probs=151.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCC-----CCCCceeeEEEECCeecCcc-----cccceEEeeccccccCCCCCHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKL-----DGNLNKSGSITYNGWELDEF-----QVQRASAYIGQTDNHIAELTVRETLDF 70 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~-----~~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~~TV~e~l~f 70 (1250)
+++|+||||||||||+++|+|++ +| .+|+|.++|.++... ..++.++|++|++.++ .+||+||+.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~ 103 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAY 103 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHh
Confidence 47999999999999999999998 64 499999999987432 2356799999998877 7999999988
Q ss_pred HHHccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCcccc
Q 000860 71 AARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQ 150 (1250)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 150 (1250)
+....+.... .+ .+.+++++++.+||.+..+..+. ..+|||||
T Consensus 104 ~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~ 146 (227)
T cd03260 104 GLRLHGIKLK----------EE------------------------LDERVEEALRKAALWDEVKDRLH---ALGLSGGQ 146 (227)
T ss_pred HHHhcCCCcH----------HH------------------------HHHHHHHHHHHcCCChHHhccCC---cccCCHHH
Confidence 6543211000 00 01125678899999876565531 23599999
Q ss_pred chhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecC
Q 000860 151 KKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGP 230 (1250)
Q Consensus 151 kqRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~ 230 (1250)
|||++|||||+.+|++++|||||+|||+.++..+.+.|++++++ +|+|++. |+..++.+.+|++++|++|++++.|+
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~s-H~~~~~~~~~d~i~~l~~G~i~~~g~ 223 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVT-HNMQQAARVADRTAFLLNGRLVEFGP 223 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEe-ccHHHHHHhCCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999999999998753 6777664 55677888999999999999999998
Q ss_pred hhh
Q 000860 231 RAE 233 (1250)
Q Consensus 231 ~~~ 233 (1250)
+++
T Consensus 224 ~~~ 226 (227)
T cd03260 224 TEQ 226 (227)
T ss_pred ccc
Confidence 765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-32 Score=269.04 Aligned_cols=217 Identities=23% Similarity=0.362 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECC-cc
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG-YP 727 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g-~~ 727 (1250)
.++.+|++.+++ ..++|+++||++.|||+-+|+|||||||||+|++|+|... +..|+++++| .+
T Consensus 5 iL~~~~vsVsF~-------------GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr--p~~G~v~f~g~~d 69 (249)
T COG4674 5 ILYLDGVSVSFG-------------GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR--PQEGEVLFDGDTD 69 (249)
T ss_pred eEEEeceEEEEc-------------ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC--CCcceEEEcCchh
Confidence 578888888764 4568999999999999999999999999999999999876 3579999999 56
Q ss_pred CCcc----cccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCC-----CCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000860 728 KEQS----TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPK-----EISKDQRHEFVEEVMSLVELDSLRHALVGSPG 798 (1250)
Q Consensus 728 ~~~~----~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~ 798 (1250)
+... ..+.-||--+|.|..|+.+||+|||..+.+-+.+- .....+.+++++++++..||.+.+|...+.
T Consensus 70 l~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~-- 147 (249)
T COG4674 70 LTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAAL-- 147 (249)
T ss_pred hccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhh--
Confidence 5431 23456788899999999999999999986543210 011244567899999999999999988876
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
||.||||++-|++.++.+|++|+||||++|+--+.....-++|++++. +++|+++-||.. -+-+.+|+|.+|++
T Consensus 148 ---LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~- 221 (249)
T COG4674 148 ---LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHE- 221 (249)
T ss_pred ---hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEec-
Confidence 999999999999999999999999999999999999999999999974 689999999985 47889999999986
Q ss_pred cEEEEeCCCC
Q 000860 879 GRVIYGGKLG 888 (1250)
Q Consensus 879 g~~~~~g~~~ 888 (1250)
|.+...|+.+
T Consensus 222 G~VL~EGsld 231 (249)
T COG4674 222 GSVLAEGSLD 231 (249)
T ss_pred cceeecccHH
Confidence 7999999864
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-32 Score=295.16 Aligned_cols=183 Identities=30% Similarity=0.463 Sum_probs=150.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc--cccceEEeeccccccCCCCCHHHHHHHHHHccCCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF--QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~ 78 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++.+++.+||+||+.+.....+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~ 103 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP 103 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhCCC
Confidence 47999999999999999999999865 99999999877432 23567999999998999999999998865432110
Q ss_pred cchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHH
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~ 158 (1250)
.. + .+..++++++.+||++..++.+++ ||||||||++|||
T Consensus 104 ~~-----------~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~la~ 143 (211)
T cd03264 104 SK-----------E------------------------VKARVDEVLELVNLGDRAKKKIGS-----LSGGMRRRVGIAQ 143 (211)
T ss_pred HH-----------H------------------------HHHHHHHHHHHCCCHHHHhCchhh-----CCHHHHHHHHHHH
Confidence 00 0 011256788999998877777654 9999999999999
Q ss_pred HHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeec
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229 (1250)
Q Consensus 159 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G 229 (1250)
||+.+|+++||||||+|||+.++..+.+.|+++++ +.|+|++ +|+...+.+.+|++++|++|++++.|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~v-sH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 144 ALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILS-THIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEE-cCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999864 4677666 45667777899999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-32 Score=295.69 Aligned_cols=191 Identities=34% Similarity=0.551 Sum_probs=153.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccccceEEeeccccccCCCCCHHHHHHHHHHccCCCcc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGANDS 80 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~~ 80 (1250)
+++|+||||||||||+++|+|++++..+.+|+|.++|.++.....++.++|++|++.+++.+||+||+.++.........
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~ 114 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKS 114 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhccccc
Confidence 47999999999999999999999722234999999999876445577899999999999999999999987543211100
Q ss_pred hhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHH-HHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 81 FAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDY-VLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
. .... ...++. .++.+++.+..++.++ .||||||||++||||
T Consensus 115 ~--------~~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~lara 157 (226)
T cd03234 115 S--------DAIR------------------------KKRVEDVLLRDLALTRIGGNLVK-----GISGGERRRVSIAVQ 157 (226)
T ss_pred c--------hHHH------------------------HHHHHHHHHHhhcchhhhccccc-----CcCHHHHHHHHHHHH
Confidence 0 0000 001233 6788888776666554 499999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeec
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G 229 (1250)
|+.+|+++||||||+|||+.++..+.+.|+++.++ +.|+|++.|+...++.+.+|++++|++|++++.|
T Consensus 158 l~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 158 LLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999998654 7888888776556899999999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-32 Score=309.24 Aligned_cols=189 Identities=22% Similarity=0.385 Sum_probs=152.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc-------------------cccceEEeecccc--ccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF-------------------QVQRASAYIGQTD--NHI 59 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~-------------------~~~~~~~yv~Q~~--~~~ 59 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++||+|++ .++
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~ 130 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF 130 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhccc
Confidence 47999999999999999999999865 99999999886431 2467799999985 355
Q ss_pred CCCCHHHHHHHHHHccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCc-ccccccc
Q 000860 60 AELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLD-LCSDTVV 138 (1250)
Q Consensus 60 ~~~TV~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~v 138 (1250)
+ .||+||+.|+....+... .+ ...+++++++.+||+ +..++.+
T Consensus 131 ~-~tv~eni~~~~~~~~~~~-----------~~------------------------~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 131 K-DTIEKDIMFGPVALGVKK-----------SE------------------------AKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred c-chHHHHHHhhHHhcCCCH-----------HH------------------------HHHHHHHHHHHcCCChhHhcCCc
Confidence 4 699999988753221100 00 001356788999996 4555544
Q ss_pred CCCccccCccccchhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceE
Q 000860 139 GSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLV 218 (1250)
Q Consensus 139 g~~~~~~LSGGqkqRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~ 218 (1250)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .++|+|++. |+.+++.+.+|+|+
T Consensus 175 -----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~Tiiivt-Hd~~~~~~~adri~ 247 (320)
T PRK13631 175 -----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVIT-HTMEHVLEVADEVI 247 (320)
T ss_pred -----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEe-cCHHHHHHhCCEEE
Confidence 44999999999999999999999999999999999999999999999865 478888774 45667778999999
Q ss_pred EecCCeEEeecChhhHH
Q 000860 219 LLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 219 ~l~~G~i~~~G~~~~~~ 235 (1250)
+|++|++++.|+++++.
T Consensus 248 vl~~G~i~~~g~~~~~~ 264 (320)
T PRK13631 248 VMDKGKILKTGTPYEIF 264 (320)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999998764
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-32 Score=310.20 Aligned_cols=190 Identities=22% Similarity=0.330 Sum_probs=154.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCc---------------------------ccccceEEeec
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDE---------------------------FQVQRASAYIG 53 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~---------------------------~~~~~~~~yv~ 53 (1250)
+++|+||||||||||+++|+|+++|+ +|+|.++|.+... ...++.+|||+
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~ 111 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVF 111 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccccchHHHHHhceEEEe
Confidence 47999999999999999999999865 8999999876421 12356799999
Q ss_pred ccc-ccCCCCCHHHHHHHHHHccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCc-
Q 000860 54 QTD-NHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLD- 131 (1250)
Q Consensus 54 Q~~-~~~~~~TV~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~- 131 (1250)
|++ ..+...||+|||.|+....+.... + ...+++++++.+||.
T Consensus 112 Q~~~~~l~~~tv~e~i~~~~~~~~~~~~-----------~------------------------~~~~~~~~l~~~gL~~ 156 (305)
T PRK13651 112 QFAEYQLFEQTIEKDIIFGPVSMGVSKE-----------E------------------------AKKRAAKYIELVGLDE 156 (305)
T ss_pred eCcccccccccHHHHHHhhHHHcCCCHH-----------H------------------------HHHHHHHHHHHcCCCh
Confidence 984 345567999999987543221100 0 011356789999996
Q ss_pred cccccccCCCccccCccccchhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHH
Q 000860 132 LCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETF 211 (1250)
Q Consensus 132 ~~~~t~vg~~~~~~LSGGqkqRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~ 211 (1250)
+..++.+.+ |||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .|+|+|++ +|+.+.+.
T Consensus 157 ~~~~~~~~~-----LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiiv-tHd~~~~~ 229 (305)
T PRK13651 157 SYLQRSPFE-----LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILV-THDLDNVL 229 (305)
T ss_pred hhhhCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEE-eeCHHHHH
Confidence 566766554 999999999999999999999999999999999999999999999875 47888776 45567788
Q ss_pred hhccceEEecCCeEEeecChhhHH
Q 000860 212 ELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 212 ~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
+.+|||++|++|++++.|+++++.
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999998864
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-32 Score=295.29 Aligned_cols=185 Identities=27% Similarity=0.403 Sum_probs=151.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc-ccceEEeeccccccCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++..... ..
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~ 101 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL-KL 101 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc-Cc
Confidence 47999999999999999999999864 999999999875432 34679999999988999999999987532110 00
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
. .. .+.+++++++.+||.+..++.+.+ ||||||||++||||
T Consensus 102 ~---------~~-------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~ia~a 142 (211)
T cd03298 102 T---------AE-------------------------DRQAIEVALARVGLAGLEKRLPGE-----LSGGERQRVALARV 142 (211)
T ss_pred c---------HH-------------------------HHHHHHHHHHHcCCHHHHhCCccc-----CCHHHHHHHHHHHH
Confidence 0 00 011256789999998777777654 99999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeec
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G 229 (1250)
|+.+|++++|||||+|||+.++..+.+.|+++.++.+.|+|++ +|+..++.+.+|++++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~-sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMV-THQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE-ecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999876557888876 45567788899999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.8e-32 Score=297.19 Aligned_cols=191 Identities=28% Similarity=0.368 Sum_probs=155.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc--cccceEEeeccccccCCCCCHHHHHHHHHHccCCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF--QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~ 78 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ...+.++|++|++.+++.+|++||+.+....++..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~ 105 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLS 105 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCC
Confidence 47999999999999999999999865 99999999887432 22357999999988888999999998764332110
Q ss_pred cchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHH
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~ 158 (1250)
. .+ ....++++++.+||++..++.+++ ||||||||++|||
T Consensus 106 ~-----------~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrl~lar 145 (236)
T TIGR03864 106 R-----------AE------------------------ARERIAALLARLGLAERADDKVRE-----LNGGHRRRVEIAR 145 (236)
T ss_pred H-----------HH------------------------HHHHHHHHHHHcCChhhhcCChhh-----CCHHHHHHHHHHH
Confidence 0 00 001256788899998877777654 9999999999999
Q ss_pred HHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 159 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||+.+|+++||||||+|||+.++..+.+.|++++++.++|+|++.|+ .+++. .+|++++|++|++++.|+++++.+
T Consensus 146 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~-~~~~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 146 ALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHL-VDEIE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecC-hhhHh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 99999999999999999999999999999999875457888877554 45554 599999999999999999887653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.8e-32 Score=296.40 Aligned_cols=189 Identities=27% Similarity=0.316 Sum_probs=153.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccccceEEeeccccccCCCCCHHHHHHHHHHccCCCcc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGANDS 80 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~~ 80 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++..... ..+|++|++.+++.+||+||+.++.........
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~ 87 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIALAVDRVLPDLS 87 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHHHHHHhcccCCC
Confidence 47999999999999999999999864 9999999998754322 248999999999999999999886321000000
Q ss_pred hhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHHH
Q 000860 81 FAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI 160 (1250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~al 160 (1250)
..+ .+..++++++.+||++..++.+++ ||||||||++|||||
T Consensus 88 ---------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~la~al 129 (230)
T TIGR01184 88 ---------KSE------------------------RRAIVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARAL 129 (230)
T ss_pred ---------HHH------------------------HHHHHHHHHHHcCCHHHHcCChhh-----CCHHHHHHHHHHHHH
Confidence 000 011256788999998877777654 999999999999999
Q ss_pred hcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhh
Q 000860 161 VGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233 (1250)
Q Consensus 161 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~ 233 (1250)
+.+|+++||||||+|||+.++..+.+.|++++++.++|+|++. |+..++.+.+|++++|++|++++.|+..+
T Consensus 130 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~s-H~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 130 SIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVT-HDVDEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhcCEEEEEeCCcEecccCcee
Confidence 9999999999999999999999999999998765578888774 55677888999999999999998886554
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-32 Score=306.81 Aligned_cols=191 Identities=20% Similarity=0.292 Sum_probs=155.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc-------cccceEEeecccc--ccCCCCCHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF-------QVQRASAYIGQTD--NHIAELTVRETLDFA 71 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~--~~~~~~TV~e~l~f~ 71 (1250)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.+|||+|++ .+++ .||.||+.|+
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~ 110 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFG 110 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhh
Confidence 47999999999999999999999865 99999999987431 2467899999985 3444 6999999987
Q ss_pred HHccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCc-cccccccCCCccccCcccc
Q 000860 72 ARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLD-LCSDTVVGSEMLRGVSGGQ 150 (1250)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGq 150 (1250)
....+.... + ...+++++++.+||. +..++.+. .|||||
T Consensus 111 ~~~~~~~~~-----------~------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----~LSgGq 150 (286)
T PRK13646 111 PKNFKMNLD-----------E------------------------VKNYAHRLLMDLGFSRDVMSQSPF-----QMSGGQ 150 (286)
T ss_pred HHHcCCCHH-----------H------------------------HHHHHHHHHHHcCCChhhhhCCcc-----cCCHHH
Confidence 532211100 0 011256788999996 56666654 499999
Q ss_pred chhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecC
Q 000860 151 KKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGP 230 (1250)
Q Consensus 151 kqRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~ 230 (1250)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++.|.|+|++. |+.+++.+.+|++++|++|++++.|+
T Consensus 151 ~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vt-H~~~~~~~~~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVS-HDMNEVARYADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe-cCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999765578888875 55677888999999999999999999
Q ss_pred hhhHHH
Q 000860 231 RAEVLE 236 (1250)
Q Consensus 231 ~~~~~~ 236 (1250)
++++.+
T Consensus 230 ~~~~~~ 235 (286)
T PRK13646 230 PKELFK 235 (286)
T ss_pred HHHHHh
Confidence 887643
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-32 Score=273.35 Aligned_cols=192 Identities=27% Similarity=0.413 Sum_probs=157.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHccCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~ 77 (1250)
|++|+||||||||||||.|+|++.|+ +|++.+||.+++.. +..+..+..||+..+-+..||+|-+.+|..-.+.
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~ 105 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS 105 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc
Confidence 58999999999999999999999865 99999999998654 3467789999998777778999999998644322
Q ss_pred CcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHH
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA 157 (1250)
..+. .+.++.++++|...++.+.....+ ..|||||||||.+|
T Consensus 106 g~~~---------------------------------~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVqlA 147 (259)
T COG4559 106 GREP---------------------------------EEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLA 147 (259)
T ss_pred CCCc---------------------------------hhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHHH
Confidence 1110 001123567788888887665544 45999999999999
Q ss_pred HHHhc------CCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecCh
Q 000860 158 EMIVG------PRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPR 231 (1250)
Q Consensus 158 ~al~~------~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~ 231 (1250)
|.|+. ++++|+||||||+||...+..+++..++++++ |..|+++ .|+.+-...++|||++|.+|+++..|++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~V-LHDLNLAA~YaDrivll~~Grv~a~g~p 225 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAV-LHDLNLAAQYADRIVLLHQGRVIASGSP 225 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEE-EccchHHHHhhheeeeeeCCeEeecCCH
Confidence 99975 44589999999999999999999999999986 5666655 5778999999999999999999999999
Q ss_pred hhHH
Q 000860 232 AEVL 235 (1250)
Q Consensus 232 ~~~~ 235 (1250)
+++.
T Consensus 226 ~~vl 229 (259)
T COG4559 226 QDVL 229 (259)
T ss_pred HHhc
Confidence 9875
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.5e-32 Score=291.17 Aligned_cols=194 Identities=19% Similarity=0.229 Sum_probs=155.6
Q ss_pred eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEE-ECCccCCcccccceEEEEcCCCCCCCCCCHHHH
Q 000860 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIK-ISGYPKEQSTFARISGYVEQEDVHSPQVTIEES 755 (1250)
Q Consensus 677 iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~-~~g~~~~~~~~~~~~~yv~q~~~~~~~ltv~e~ 755 (1250)
+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|. ++|... .+.+++.++|.+|++||
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~----------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL----------PLGANSFILPGLTGEEN 69 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee----------ccccccccCCcCcHHHH
Confidence 7999999999999999999999999999999999865 3579986 776432 13345667889999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHH
Q 000860 756 LWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 835 (1250)
Q Consensus 756 l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~ 835 (1250)
+.+..... +.+.++. .+.+.+.+++....++.++. ||||||||++||++|+.+|++++|||||++||+.
T Consensus 70 l~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~~-----lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRVSE-----YSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHc---CCCHHHH---HHHHHHHhChhHHhhchHhh-----cCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 99876543 1222222 23344567787777777754 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCCCccchhHHHHhhh
Q 000860 836 AAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYFQG 900 (1250)
Q Consensus 836 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~yf~~ 900 (1250)
++..+.+.+.+..+ ++|+|+++|++. ++...+|++++|.+ |++++.|+. +.+.++|..
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~----~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLH-GKITMCEDL----AQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEEC-CeEEEeCCH----HHHHHHHHH
Confidence 99999998865433 578999999985 56678999999985 899999987 455566543
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.5e-32 Score=299.98 Aligned_cols=191 Identities=21% Similarity=0.316 Sum_probs=155.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc-----------cccceEEeeccccccCCCCCHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF-----------QVQRASAYIGQTDNHIAELTVRETLD 69 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~-----------~~~~~~~yv~Q~~~~~~~~TV~e~l~ 69 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++.+++..||+||+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~ 107 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENII 107 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHH
Confidence 47999999999999999999999864 99999999887421 23567999999988888899999998
Q ss_pred HHHHccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccc
Q 000860 70 FAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGG 149 (1250)
Q Consensus 70 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 149 (1250)
++....... . ..+ ....++++++.+||.+..++.+++ ||||
T Consensus 108 ~~~~~~~~~-~---------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G 148 (250)
T PRK11264 108 EGPVIVKGE-P---------KEE------------------------ATARARELLAKVGLAGKETSYPRR-----LSGG 148 (250)
T ss_pred HHHHHhcCC-C---------HHH------------------------HHHHHHHHHHHcCCcchhhCChhh-----CChH
Confidence 753211000 0 000 011256788899998777766544 9999
Q ss_pred cchhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeec
Q 000860 150 QKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229 (1250)
Q Consensus 150 qkqRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G 229 (1250)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .++|+|++. |+..++.+++|++++|++|++++.|
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~t-H~~~~~~~~~d~i~~l~~G~i~~~~ 226 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVT-HEMSFARDVADRAIFMDQGRIVEQG 226 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEe-CCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 377887764 5567788899999999999999999
Q ss_pred ChhhHH
Q 000860 230 PRAEVL 235 (1250)
Q Consensus 230 ~~~~~~ 235 (1250)
+++++.
T Consensus 227 ~~~~~~ 232 (250)
T PRK11264 227 PAKALF 232 (250)
T ss_pred CHHHHh
Confidence 988764
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.8e-32 Score=360.32 Aligned_cols=214 Identities=24% Similarity=0.375 Sum_probs=171.4
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEEC-Ccc
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKIS-GYP 727 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~-g~~ 727 (1250)
.++++||++.|+.. +++++|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.+| |.+
T Consensus 382 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~--p~~G~I~i~~g~~ 449 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR----------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD--PTEGDIIINDSHN 449 (1466)
T ss_pred cEEEEEEEEEcCCC----------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc--CCCCeEEEeCCcc
Confidence 68999999998531 13469999999999999999999999999999999999876 458999994 676
Q ss_pred CCc---ccccceEEEEcCCCCCCCCCCHHHHHHHHHhc-CC---------CC-----C----------------------
Q 000860 728 KEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANL-RL---------PK-----E---------------------- 767 (1250)
Q Consensus 728 ~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l-~~---------~~-----~---------------------- 767 (1250)
+.. ..+|+.+|||+|++.+|+ .||+||+.++... +. +. .
T Consensus 450 i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (1466)
T PTZ00265 450 LKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNT 528 (1466)
T ss_pred hhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccc
Confidence 543 346788999999999987 5999999986310 00 00 0
Q ss_pred --C---------CHHHHHHHHHHHHHHcCCccc-------ccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCC
Q 000860 768 --I---------SKDQRHEFVEEVMSLVELDSL-------RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPT 829 (1250)
Q Consensus 768 --~---------~~~~~~~~v~~~l~~l~l~~~-------~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPT 829 (1250)
. .....++.+.++++.+++.+. .||.+|.. +..||||||||++|||||+++|+||+|||||
T Consensus 529 ~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 529 TDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEAT 607 (1466)
T ss_pred cchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 0 001123456777777766543 46667664 3469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeecC
Q 000860 830 SGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 830 sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
|+||+.++..+++.|+++++ +|+|+|+++|+++ ..+.+|+|++|++|
T Consensus 608 SaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls--~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLS--TIRYANTIFVLSNR 655 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHH--HHHhCCEEEEEeCC
Confidence 99999999999999999875 5899999999985 45789999999873
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=330.08 Aligned_cols=206 Identities=28% Similarity=0.386 Sum_probs=168.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++. ++++|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 6 ~l~i~~l~~~y~~------------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~~-- 69 (556)
T PRK11819 6 IYTMNRVSKVVPP------------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPG-- 69 (556)
T ss_pred EEEEeeEEEEeCC------------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--
Confidence 6899999998741 2469999999999999999999999999999999999876 35799998752
Q ss_pred CcccccceEEEEcCCCCCCCCCCHHHHHHHHHh-c--------------CCCCC-CC-----------------HHHHHH
Q 000860 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSAN-L--------------RLPKE-IS-----------------KDQRHE 775 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~-l--------------~~~~~-~~-----------------~~~~~~ 775 (1250)
..+|||+|++.+++.+||.|++.+... . ..+.. .. ..+..+
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 358999999999999999999987521 0 00000 00 001245
Q ss_pred HHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEE
Q 000860 776 FVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVV 855 (1250)
Q Consensus 776 ~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi 855 (1250)
+++++++.+|+.. .++.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||
T Consensus 144 ~~~~~l~~~gl~~-~~~~~~-----~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tvi 214 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAKVT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVV 214 (556)
T ss_pred HHHHHHHhCCCCc-ccCchh-----hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEE
Confidence 6788899999964 566665 49999999999999999999999999999999999999999999986 35999
Q ss_pred EEecCCCHHHHHhhcceeeeecCcEEE-EeCCC
Q 000860 856 CTIHQPSIEIFEAFDELLLMKRGGRVI-YGGKL 887 (1250)
Q Consensus 856 ~~~H~~~~~~~~~~d~v~~l~~gg~~~-~~g~~ 887 (1250)
+++|++. .+...+|++++|.+ |+++ +.|+.
T Consensus 215 iisHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~ 245 (556)
T PRK11819 215 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNY 245 (556)
T ss_pred EEeCCHH-HHHhhcCeEEEEeC-CEEEEecCCH
Confidence 9999985 57788999999986 5654 78875
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.8e-32 Score=297.38 Aligned_cols=190 Identities=21% Similarity=0.340 Sum_probs=156.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc-----cccceEEeeccccccCCCCCHHHHHHHHHHc-
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF-----QVQRASAYIGQTDNHIAELTVRETLDFAARC- 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~- 74 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~ 105 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV 105 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh
Confidence 47999999999999999999999864 99999999987532 2356799999998888889999999875321
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 154 (1250)
.+.. ..+ ....++++++.+||++..+..+.+ ||||||||+
T Consensus 106 ~~~~-----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv 145 (240)
T PRK09493 106 RGAS-----------KEE------------------------AEKQARELLAKVGLAERAHHYPSE-----LSGGQQQRV 145 (240)
T ss_pred cCCC-----------HHH------------------------HHHHHHHHHHHcCChHHHhcChhh-----cCHHHHHHH
Confidence 1100 000 011256788999998777766644 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhH
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 155 ~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~ 234 (1250)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|++. |+..++.+.+|++++|++|++++.|+.+++
T Consensus 146 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 146 AIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVT-HEIGFAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 999999999999999999999999999999999999865 478888775 456777789999999999999999998876
Q ss_pred H
Q 000860 235 L 235 (1250)
Q Consensus 235 ~ 235 (1250)
.
T Consensus 224 ~ 224 (240)
T PRK09493 224 I 224 (240)
T ss_pred h
Confidence 4
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-32 Score=296.64 Aligned_cols=192 Identities=26% Similarity=0.391 Sum_probs=157.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc-ccceEEeeccccccCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++.+|+.||+.++.... ...
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~ 102 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG-LKL 102 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcccccc-cCC
Confidence 47999999999999999999999864 999999999875332 2457999999998999899999997753210 000
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
. .. .+.+++++++.+||++..++.+.. ||||||||++||||
T Consensus 103 ~---------~~-------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv~lara 143 (232)
T PRK10771 103 N---------AA-------------------------QREKLHAIARQMGIEDLLARLPGQ-----LSGGQRQRVALARC 143 (232)
T ss_pred C---------HH-------------------------HHHHHHHHHHHcCcHHHHhCCccc-----CCHHHHHHHHHHHH
Confidence 0 00 011367789999998877877754 99999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
++.+|+++||||||+|||+.++..+.+.|+++.++.++|+|++. |+..++.+.+|++++|++|++++.|+++++.+
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~s-H~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVS-HSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE-CCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999998765577888764 55677788999999999999999999887643
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-32 Score=293.73 Aligned_cols=183 Identities=30% Similarity=0.439 Sum_probs=150.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc-------cccceEEeeccccccCCCCCHHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF-------QVQRASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~ 73 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++.+++.+|++||+.+...
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~ 101 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLK 101 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHh
Confidence 47999999999999999999999864 99999999886421 235679999999888889999999987642
Q ss_pred ccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchh
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKR 153 (1250)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqR 153 (1250)
.. .. ... +.+++++++.+||++..++.+++ ||||||||
T Consensus 102 ~~---~~----------~~~------------------------~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr 139 (214)
T cd03297 102 RK---RN----------RED------------------------RISVDELLDLLGLDHLLNRYPAQ-----LSGGEKQR 139 (214)
T ss_pred hC---CH----------HHH------------------------HHHHHHHHHHcCCHhHhhcCccc-----CCHHHHHH
Confidence 11 00 000 01256788899998766766654 99999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeec
Q 000860 154 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229 (1250)
Q Consensus 154 v~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G 229 (1250)
++|||||+.+|++++|||||+|||+.++..+.+.|++++++.++|+|++. |+..++.+.+|++++|++|++++.|
T Consensus 140 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 140 VALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT-HDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEe-cCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999998765577877764 5567777899999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=294.16 Aligned_cols=194 Identities=24% Similarity=0.267 Sum_probs=154.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC-CceeeEEEECCeecCcccc-cceEEeeccccc--cCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGN-LNKSGSITYNGWELDEFQV-QRASAYIGQTDN--HIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~-~~~~G~v~~~g~~~~~~~~-~~~~~yv~Q~~~--~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||||||||+++|+|+++|. .+.+|+|.++|.++..... ++.++|++|++. +.+.+|+.||+.+.....+
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~ 93 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLG 93 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHHcC
Confidence 47999999999999999999999861 0149999999998754433 357999999974 5567899999977543211
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCcc---ccccccCCCccccCccccchh
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDL---CSDTVVGSEMLRGVSGGQKKR 153 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~~t~vg~~~~~~LSGGqkqR 153 (1250)
... . + ...+++++++.+||++ ..++.++ .||||||||
T Consensus 94 ~~~----------~-~------------------------~~~~~~~~l~~~~l~~~~~~~~~~~~-----~LS~G~~qr 133 (230)
T TIGR02770 94 KLS----------K-Q------------------------ARALILEALEAVGLPDPEEVLKKYPF-----QLSGGMLQR 133 (230)
T ss_pred ccH----------H-H------------------------HHHHHHHHHHHcCCCchHHHHhCChh-----hcCHHHHHH
Confidence 000 0 0 0112567889999973 4455554 499999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhh
Q 000860 154 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233 (1250)
Q Consensus 154 v~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~ 233 (1250)
|+|||||+.+|+++||||||+|||+.++..+.+.|+++.++.++|+|++. |+.+++...+|++++|++|+++..|++++
T Consensus 134 v~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 212 (230)
T TIGR02770 134 VMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLIT-HDLGVVARIADEVAVMDDGRIVERGTVKE 212 (230)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998765577888774 55667888999999999999999999887
Q ss_pred HH
Q 000860 234 VL 235 (1250)
Q Consensus 234 ~~ 235 (1250)
+.
T Consensus 213 ~~ 214 (230)
T TIGR02770 213 IF 214 (230)
T ss_pred HH
Confidence 64
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=294.48 Aligned_cols=187 Identities=25% Similarity=0.307 Sum_probs=147.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc------cccceEEeecccc--ccCCCCCHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTD--NHIAELTVRETLDFAA 72 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~------~~~~~~~yv~Q~~--~~~~~~TV~e~l~f~~ 72 (1250)
+++|+|||||||||||++|+|+++|. +|+|.++|.++... ..++.++|++|++ .+++.+||+||+.++.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~ 109 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL 109 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHH
Confidence 47999999999999999999999864 99999999987532 2356799999997 4667899999998865
Q ss_pred HccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCc-cccccccCCCccccCccccc
Q 000860 73 RCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLD-LCSDTVVGSEMLRGVSGGQK 151 (1250)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqk 151 (1250)
...+..... ... +..++++++.+|+. +..+..+++ ||||||
T Consensus 110 ~~~~~~~~~---------~~~------------------------~~~~~~~l~~~~l~~~~~~~~~~~-----LS~G~~ 151 (228)
T cd03257 110 RIHGKLSKK---------EAR------------------------KEAVLLLLVGVGLPEEVLNRYPHE-----LSGGQR 151 (228)
T ss_pred HhccCCcHH---------HHH------------------------HHHHHHHHHHCCCChhHhhCCchh-----cCHHHH
Confidence 332110000 000 00124577888885 455665544 999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeec
Q 000860 152 KRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229 (1250)
Q Consensus 152 qRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G 229 (1250)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.++|+|++.| +..++.+.+|++++|++|+++..|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH-~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITH-DLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999987654778887754 466777799999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-32 Score=299.04 Aligned_cols=180 Identities=22% Similarity=0.292 Sum_probs=151.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccccceEEeeccccccCCCCCHHHHHHHHHHccCCCcc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGANDS 80 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~~ 80 (1250)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++. ..++.++|++|++.+++.+||+||+.++.. . .
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~--~---~ 109 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLA--EAREDTRLMFQDARLLPWKKVIDNVGLGLK--G---Q 109 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHH--HhhCceEEEecCccCCCCCcHHHHHHhccc--c---h
Confidence 47999999999999999999999864 999999998763 235679999999888888999999987421 0 0
Q ss_pred hhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHHH
Q 000860 81 FAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI 160 (1250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~al 160 (1250)
. +.+++++++.+||.+..+..++ .||||||||++|||||
T Consensus 110 ----------~--------------------------~~~~~~~l~~~gl~~~~~~~~~-----~LSgGqkqrl~laraL 148 (257)
T PRK11247 110 ----------W--------------------------RDAALQALAAVGLADRANEWPA-----ALSGGQKQRVALARAL 148 (257)
T ss_pred ----------H--------------------------HHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHH
Confidence 0 0124567888999877676654 4999999999999999
Q ss_pred hcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChh
Q 000860 161 VGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRA 232 (1250)
Q Consensus 161 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~ 232 (1250)
+.+|+++||||||+|||+.++..+.+.|+++.++.++|+|++. |+...+.+.+|++++|++|+++++|+.+
T Consensus 149 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivs-Hd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 149 IHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT-HDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999999999998765578887764 5566778899999999999999988754
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-32 Score=303.71 Aligned_cols=192 Identities=27% Similarity=0.374 Sum_probs=156.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCc-----ccccceEEeeccccc-cCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDE-----FQVQRASAYIGQTDN-HIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~-----~~~~~~~~yv~Q~~~-~~~~~TV~e~l~f~~~~ 74 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.. ...++.++|++|++. .+...||+||+.++...
T Consensus 34 ~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~ 110 (283)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN 110 (283)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHH
Confidence 47999999999999999999999864 9999999998731 134567999999862 34567999999886432
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 154 (1250)
.+... .+ ...+++++++.+||.+..++.+++ ||||||||+
T Consensus 111 ~~~~~-----------~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrl 150 (283)
T PRK13636 111 LKLPE-----------DE------------------------VRKRVDNALKRTGIEHLKDKPTHC-----LSFGQKKRV 150 (283)
T ss_pred cCCCH-----------HH------------------------HHHHHHHHHHHCCChhhhhCCccc-----CCHHHHHHH
Confidence 21110 00 001256788999998877777654 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhH
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 155 ~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~ 234 (1250)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|+|++. |+.+++.+.+|++++|++|++++.|+++++
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvs-H~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 229 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIAT-HDIDIVPLYCDNVFVMKEGRVILQGNPKEV 229 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEe-cCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999765578888774 556777789999999999999999999886
Q ss_pred HH
Q 000860 235 LE 236 (1250)
Q Consensus 235 ~~ 236 (1250)
.+
T Consensus 230 ~~ 231 (283)
T PRK13636 230 FA 231 (283)
T ss_pred hc
Confidence 53
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=297.63 Aligned_cols=186 Identities=25% Similarity=0.352 Sum_probs=152.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccccceEEeeccccccCCCCCHHHHHHHHHHccCCCcc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGANDS 80 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~~ 80 (1250)
+++|+|||||||||||++|+|+++|. +|+|.++|.++.. ..+.++|++|++.+++..||+||+.++....+...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~- 102 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEK- 102 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcCCCH-
Confidence 47999999999999999999999864 9999999998753 23458999999888888999999987643221100
Q ss_pred hhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHHH
Q 000860 81 FAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI 160 (1250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~al 160 (1250)
.+ ....++++++.+||.+..++.+++ ||||||||++|||||
T Consensus 103 ----------~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrl~laral 143 (255)
T PRK11248 103 ----------MQ------------------------RLEIAHQMLKKVGLEGAEKRYIWQ-----LSGGQRQRVGIARAL 143 (255)
T ss_pred ----------HH------------------------HHHHHHHHHHHcCChhHhhCChhh-----CCHHHHHHHHHHHHH
Confidence 00 001256788999998777766554 999999999999999
Q ss_pred hcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEec--CCeEEeecChh
Q 000860 161 VGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLS--DGYLVYQGPRA 232 (1250)
Q Consensus 161 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~--~G~i~~~G~~~ 232 (1250)
+.+|++|||||||+|||+.++..+.+.|++++++.++|+|++. |+..++.+.+|++++|+ +|+++..++.+
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivs-H~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLIT-HDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999999998654578887764 55678888999999998 59999887754
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-32 Score=280.92 Aligned_cols=202 Identities=26% Similarity=0.396 Sum_probs=172.5
Q ss_pred ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC--cccccceEEEEc-CCCCCCCCC
Q 000860 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE--QSTFARISGYVE-QEDVHSPQV 750 (1250)
Q Consensus 674 ~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~--~~~~~~~~~yv~-q~~~~~~~l 750 (1250)
...+++|+||+|++|++++++|||||||||+||+|+|... +.+|.|.++|.+.- +..+-+.+++|+ |--.+.-.+
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl 113 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL 113 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeec
Confidence 3457899999999999999999999999999999999876 45899999998632 233445566665 334455566
Q ss_pred CHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCC
Q 000860 751 TIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTS 830 (1250)
Q Consensus 751 tv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTs 830 (1250)
.+.|++.....+. ++++++-+++.+...+.|+|+...+..+. .||-|||.|+-||.+|+++|+||||||||-
T Consensus 114 p~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr-----~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 114 PALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPVR-----KLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhhh-----hccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 7888776655443 56778888999999999999988888774 499999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhh-CCCEEEEEecCCCHHHHHhhcceeeeecCcEEEEeCCC
Q 000860 831 GLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 831 gLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
|||..++..|.+.|++..+ .+.||+.+||..+ ++..+||||++++. |+++|+|+.
T Consensus 186 gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~-Gqlv~dg~l 241 (325)
T COG4586 186 GLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241 (325)
T ss_pred CcchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeC-CcEeecccH
Confidence 9999999999999999864 4899999999986 79999999999986 899999997
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=328.38 Aligned_cols=205 Identities=21% Similarity=0.358 Sum_probs=166.9
Q ss_pred EEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccCC
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|++++++ ++++|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.
T Consensus 2 l~i~~ls~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~--- 63 (530)
T PRK15064 2 LSTANITMQFG-------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN--- 63 (530)
T ss_pred EEEEEEEEEeC-------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC---
Confidence 67899998873 2469999999999999999999999999999999999765 35799999873
Q ss_pred cccccceEEEEcCCCCCCCCCCHHHHHHHHHh-c-----------CCCC---C--------------CCHHHHHHHHHHH
Q 000860 730 QSTFARISGYVEQEDVHSPQVTIEESLWFSAN-L-----------RLPK---E--------------ISKDQRHEFVEEV 780 (1250)
Q Consensus 730 ~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~-l-----------~~~~---~--------------~~~~~~~~~v~~~ 780 (1250)
+.+||++|++.+++.+||+|++.++.. . ..+. . ....+.+++++++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 348999999988899999999986421 0 0000 0 0001234568889
Q ss_pred HHHcCCcccc-cccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEEEEec
Q 000860 781 MSLVELDSLR-HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 859 (1250)
Q Consensus 781 l~~l~l~~~~-~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H 859 (1250)
++.+|+.+.. +..++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++ .|.|||+++|
T Consensus 139 l~~~gl~~~~~~~~~~-----~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsH 210 (530)
T PRK15064 139 LLGVGIPEEQHYGLMS-----EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISH 210 (530)
T ss_pred HHhCCCChhHhcCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeC
Confidence 9999997643 34454 4999999999999999999999999999999999999999999864 5899999999
Q ss_pred CCCHHHHHhhcceeeeecCcEE-EEeCCC
Q 000860 860 QPSIEIFEAFDELLLMKRGGRV-IYGGKL 887 (1250)
Q Consensus 860 ~~~~~~~~~~d~v~~l~~gg~~-~~~g~~ 887 (1250)
++. .+...+|++++|++ |++ ++.|+.
T Consensus 211 d~~-~~~~~~d~i~~l~~-g~i~~~~g~~ 237 (530)
T PRK15064 211 DRH-FLNSVCTHMADLDY-GELRVYPGNY 237 (530)
T ss_pred CHH-HHHhhcceEEEEeC-CEEEEecCCH
Confidence 985 57788999999986 676 577775
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=292.93 Aligned_cols=181 Identities=22% Similarity=0.342 Sum_probs=146.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc------cc-ceEEeeccccccCCCCCHHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ------VQ-RASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~-~~~~yv~Q~~~~~~~~TV~e~l~f~~~ 73 (1250)
+++|+|||||||||||++|+|+++|. +|+|.++|.++.... .+ +.++|++|++.+++.+||+||+.+...
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~ 109 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLL 109 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHH
Confidence 47999999999999999999999864 999999999875321 12 569999999888889999999988643
Q ss_pred ccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchh
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKR 153 (1250)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqR 153 (1250)
.+.... .+ ...++.++++.+||.+..++.++. ||||||||
T Consensus 110 ~~~~~~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qr 149 (221)
T TIGR02211 110 IGKKSV-----------KE------------------------AKERAYEMLEKVGLEHRINHRPSE-----LSGGERQR 149 (221)
T ss_pred hcCCCH-----------HH------------------------HHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHH
Confidence 221100 00 001256788999998777776654 99999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEE
Q 000860 154 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLV 226 (1250)
Q Consensus 154 v~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~ 226 (1250)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++.++|+|++.|+ ...+ ..+|++++|++|+++
T Consensus 150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~-~~~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD-LELA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHH-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999876557888887655 4455 457999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=303.49 Aligned_cols=190 Identities=24% Similarity=0.355 Sum_probs=154.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc-------cccceEEeeccccc-cCCCCCHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF-------QVQRASAYIGQTDN-HIAELTVRETLDFAA 72 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~-~~~~~TV~e~l~f~~ 72 (1250)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++. .+..+||+||+.|+.
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 111 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGP 111 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHH
Confidence 47999999999999999999999865 99999999987421 23467999999852 333589999998865
Q ss_pred HccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCc-cccccccCCCccccCccccc
Q 000860 73 RCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLD-LCSDTVVGSEMLRGVSGGQK 151 (1250)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqk 151 (1250)
...+... .+ ...+++++++.+||. +..++.+++ ||||||
T Consensus 112 ~~~~~~~-----------~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~~-----LSgGq~ 151 (287)
T PRK13641 112 KNFGFSE-----------DE------------------------AKEKALKWLKKVGLSEDLISKSPFE-----LSGGQM 151 (287)
T ss_pred HHcCCCH-----------HH------------------------HHHHHHHHHHHcCCChhHhhCCccc-----CCHHHH
Confidence 3221100 00 011256789999996 566777655 999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecCh
Q 000860 152 KRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPR 231 (1250)
Q Consensus 152 qRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~ 231 (1250)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|.|+|++ +|+...+.+.+|++++|++|++++.|++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvliv-sH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILV-THNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999865 47888776 4567788899999999999999999998
Q ss_pred hhHH
Q 000860 232 AEVL 235 (1250)
Q Consensus 232 ~~~~ 235 (1250)
+++.
T Consensus 230 ~~~~ 233 (287)
T PRK13641 230 KEIF 233 (287)
T ss_pred HHHh
Confidence 8764
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=295.11 Aligned_cols=187 Identities=27% Similarity=0.339 Sum_probs=151.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc----ccceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ----VQRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++.+|++||+.++....+
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP 104 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC
Confidence 47999999999999999999999864 999999998875322 24579999999999998999999988643221
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhC-CccccccccCCCccccCccccchhhH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLG-LDLCSDTVVGSEMLRGVSGGQKKRVT 155 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqkqRv~ 155 (1250)
.. . ....+++++.++ +.+..++.++ .||||||||++
T Consensus 105 ~~--~------------------------------------~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G~~qrv~ 141 (230)
T TIGR03410 105 RR--S------------------------------------RKIPDEIYELFPVLKEMLGRRGG-----DLSGGQQQQLA 141 (230)
T ss_pred cc--h------------------------------------HHHHHHHHHHHHhHHHHhhCChh-----hCCHHHHHHHH
Confidence 00 0 001244566665 4555555554 49999999999
Q ss_pred HHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhH
Q 000860 156 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 156 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~ 234 (1250)
|||||+.+|++++|||||+|||+.++.++.+.|+++.++.++|+|++. |+..++.+.+|++++|++|++++.|+.+++
T Consensus 142 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s-H~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 142 IARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVE-QYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEe-CCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999999999999999998764477888775 446778789999999999999999998875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-33 Score=272.37 Aligned_cols=194 Identities=28% Similarity=0.384 Sum_probs=165.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHccCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~ 77 (1250)
+|+++|||||||||||.+++++++. .+|+|+++|.++... .+.+.++.+-|++..-..+||+|-+.||.--.
T Consensus 29 iTs~IGPNGAGKSTLLS~~sRL~~~---d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPY-- 103 (252)
T COG4604 29 ITSIIGPNGAGKSTLLSMMSRLLKK---DSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPY-- 103 (252)
T ss_pred eeEEECCCCccHHHHHHHHHHhccc---cCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcc--
Confidence 6899999999999999999999985 499999999998543 45677889999988888999999999973211
Q ss_pred CcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHH
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA 157 (1250)
+. .++. .+.+..++++++.+.|++..|.... +||||||||.-||
T Consensus 104 --Sq---------------GRlt--------------~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQrQRAfIA 147 (252)
T COG4604 104 --SQ---------------GRLT--------------KEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQRQRAFIA 147 (252)
T ss_pred --cC---------------CCCc--------------hHHHHHHHHHHHHhcccchHHHhHH-----hcccchhhhhhhh
Confidence 00 0000 1112358889999999998886654 4999999999999
Q ss_pred HHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 158 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
+.++.+.+.++||||.++||-..+.++++.|++++++.|+|+|+++| +.+.+..++|+|+.|.+|+++.+|+++++.+
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlH-DINfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLH-DINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEe-cccHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 99999999999999999999999999999999999999999999864 5788888999999999999999999999864
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=301.48 Aligned_cols=190 Identities=26% Similarity=0.355 Sum_probs=156.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeecccc-ccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTD-NHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~-~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|+++... ..++.++|++|++ ..++..||.||+.++....+
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~ 111 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG 111 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC
Confidence 47999999999999999999999865 99999999987542 2356799999986 36777899999988653321
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
... .+ ...+++++++.+||.+..++.++. |||||||||+|
T Consensus 112 ~~~-----------~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrv~l 151 (279)
T PRK13635 112 VPR-----------EE------------------------MVERVDQALRQVGMEDFLNREPHR-----LSGGQKQRVAI 151 (279)
T ss_pred CCH-----------HH------------------------HHHHHHHHHHHcCChhhhhCCccc-----CCHHHHHHHHH
Confidence 100 00 011367789999998888877764 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
||||+.+|++|||||||+|||+.++..+++.|++++++.++|+|++.|+ ..++. .+|++++|++|++++.|+.+++.
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~-~~~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHD-LDEAA-QADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecC-HHHHH-cCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999986557888887655 45554 59999999999999999988764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=291.28 Aligned_cols=180 Identities=26% Similarity=0.365 Sum_probs=147.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc------cccceEEeeccccccCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~ 74 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++.+++.+|++||+.++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~ 105 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEV 105 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHH
Confidence 47999999999999999999999864 99999999987532 2356799999999999999999999886543
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 154 (1250)
++... .+ .+.+++++++.+||++..++.+++ ||||||||+
T Consensus 106 ~~~~~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv 145 (214)
T cd03292 106 TGVPP-----------RE------------------------IRKRVPAALELVGLSHKHRALPAE-----LSGGEQQRV 145 (214)
T ss_pred cCCCH-----------HH------------------------HHHHHHHHHHHcCCHHHhhCChhh-----cCHHHHHHH
Confidence 21100 00 001256788899998777776654 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeE
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYL 225 (1250)
Q Consensus 155 ~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i 225 (1250)
+|||||+.+|+++||||||+|||+.++..+.+.|+++.+ .++|+|++. |+...+.+.+|++++|++|++
T Consensus 146 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivt-H~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 146 AIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVAT-HAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEe-CCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999865 477877775 456777788999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=290.83 Aligned_cols=179 Identities=24% Similarity=0.374 Sum_probs=147.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc------cccceEEeeccccccCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~ 74 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++...
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEV 106 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHH
Confidence 47999999999999999999999864 99999999987532 2356799999999888899999999886543
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 154 (1250)
.+.... . .+.+++++++.+||.+..++.+.+ ||||||||+
T Consensus 107 ~~~~~~-----------~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl 146 (214)
T TIGR02673 107 RGKKER-----------E------------------------IQRRVGAALRQVGLEHKADAFPEQ-----LSGGEQQRV 146 (214)
T ss_pred cCCCHH-----------H------------------------HHHHHHHHHHHcCChhhhhCChhh-----CCHHHHHHH
Confidence 211000 0 001256788999998766766654 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCe
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGY 224 (1250)
Q Consensus 155 ~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~ 224 (1250)
+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|++. |+..++..++|++++|++|+
T Consensus 147 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~t-H~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 147 AIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVAT-HDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEe-CCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999865 478887775 55678888999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=295.32 Aligned_cols=191 Identities=20% Similarity=0.362 Sum_probs=155.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc----ccceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ----VQRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++.+||+||+.+......
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 107 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD 107 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc
Confidence 47999999999999999999999864 999999999875322 34679999999888988999999987543211
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
.. . ..+ .+..++++++.+||.+..+..++ .|||||||||+|
T Consensus 108 ~~-~---------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~l 148 (241)
T PRK10895 108 DL-S---------AEQ------------------------REDRANELMEEFHIEHLRDSMGQ-----SLSGGERRRVEI 148 (241)
T ss_pred cc-C---------HHH------------------------HHHHHHHHHHHcCCHHHhhcchh-----hCCHHHHHHHHH
Confidence 00 0 000 01125678889999876666654 499999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
||||+.+|++|||||||+|||+.++..+.+.|+++.+ .++|+|++. |+..++.+.+|++++|++|++++.|+++++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~s-H~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITD-HNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEE-cCHHHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 9999999999999999999999999999999999865 478888775 4567788899999999999999999988763
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=300.54 Aligned_cols=191 Identities=25% Similarity=0.382 Sum_probs=156.1
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccc-cCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDN-HIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~-~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++. .+...||.||+.++....+
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~ 108 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG 108 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC
Confidence 47999999999999999999999865 99999999987532 33567999999863 3446899999987643211
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
... .+ ....++++++.+||.+..++.+.. ||||||||++|
T Consensus 109 ~~~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Gq~qrl~l 148 (277)
T PRK13652 109 LDE-----------ET------------------------VAHRVSSALHMLGLEELRDRVPHH-----LSGGEKKRVAI 148 (277)
T ss_pred CCH-----------HH------------------------HHHHHHHHHHHCCChhHhcCCccc-----CCHHHHHHHHH
Confidence 100 00 001256789999998877777654 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
||||+.+|++|||||||+|||+.++..+.+.|+++.++.+.|+|++. |+.+++.+.+|++++|++|++++.|+++++.
T Consensus 149 araL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~t-H~~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 226 (277)
T PRK13652 149 AGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFST-HQLDLVPEMADYIYVMDKGRIVAYGTVEEIF 226 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHHhCCEEEEEECCeEEEECCHHHHh
Confidence 99999999999999999999999999999999998765578888775 5567788899999999999999999998874
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=304.32 Aligned_cols=193 Identities=18% Similarity=0.219 Sum_probs=158.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc------cccceEEeecccc--ccCCCCCHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTD--NHIAELTVRETLDFAA 72 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~------~~~~~~~yv~Q~~--~~~~~~TV~e~l~f~~ 72 (1250)
+++|+|+||||||||+++|+|+++|. +|+|.++|.++... ..++.++||+|++ .+.+.+||.+++....
T Consensus 43 ~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~ 119 (327)
T PRK11308 43 TLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPL 119 (327)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHH
Confidence 47999999999999999999999864 99999999987532 2356799999986 5888899999997754
Q ss_pred HccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCc-cccccccCCCccccCccccc
Q 000860 73 RCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLD-LCSDTVVGSEMLRGVSGGQK 151 (1250)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqk 151 (1250)
...... ...+ ...++.++|+.+||. ...++.+. +||||||
T Consensus 120 ~~~~~~----------~~~~------------------------~~~~~~~~l~~~gL~~~~~~~~p~-----~LSgGq~ 160 (327)
T PRK11308 120 LINTSL----------SAAE------------------------RREKALAMMAKVGLRPEHYDRYPH-----MFSGGQR 160 (327)
T ss_pred HHccCC----------CHHH------------------------HHHHHHHHHHHCCCChHHhcCCCc-----cCCHHHH
Confidence 332100 0000 012367889999996 35566554 4999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecCh
Q 000860 152 KRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPR 231 (1250)
Q Consensus 152 qRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~ 231 (1250)
|||+|||||+.+|++||+||||++||..++.++++.|+++.++.+.|+|++ +|+...+.+++|+|++|++|++++.|+.
T Consensus 161 QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~i-THdl~~~~~~adrv~vm~~G~ive~g~~ 239 (327)
T PRK11308 161 QRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFI-SHDLSVVEHIADEVMVMYLGRCVEKGTK 239 (327)
T ss_pred HHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999987667887776 4667777789999999999999999999
Q ss_pred hhHHH
Q 000860 232 AEVLE 236 (1250)
Q Consensus 232 ~~~~~ 236 (1250)
+++.+
T Consensus 240 ~~~~~ 244 (327)
T PRK11308 240 EQIFN 244 (327)
T ss_pred HHHhc
Confidence 88753
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=304.32 Aligned_cols=199 Identities=22% Similarity=0.258 Sum_probs=157.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc------cc-ceEEeecccc--ccCCCCCHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ------VQ-RASAYIGQTD--NHIAELTVRETLDFA 71 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~-~~~~yv~Q~~--~~~~~~TV~e~l~f~ 71 (1250)
+++|+|+||||||||+++|+|+++|....+|+|.++|.++.... .+ +.++||+|++ .+.+.+|+.+++.+.
T Consensus 44 ~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~ 123 (330)
T PRK09473 44 TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEV 123 (330)
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHH
Confidence 47999999999999999999999863224999999999875421 12 4799999997 688899999999775
Q ss_pred HHccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccc
Q 000860 72 ARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQK 151 (1250)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqk 151 (1250)
....... . ..+ ...++.++|+.+||++..+. . +...++||||||
T Consensus 124 ~~~~~~~-~---------~~~------------------------~~~~~~~~L~~vgL~~~~~~-~-~~~p~~LSgG~~ 167 (330)
T PRK09473 124 LMLHKGM-S---------KAE------------------------AFEESVRMLDAVKMPEARKR-M-KMYPHEFSGGMR 167 (330)
T ss_pred HHHhcCC-C---------HHH------------------------HHHHHHHHHHHcCCCChHHH-h-cCCcccCCHHHH
Confidence 4332100 0 000 01135677889999754322 2 234567999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecCh
Q 000860 152 KRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPR 231 (1250)
Q Consensus 152 qRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~ 231 (1250)
|||+|||||+.+|++||+||||+|||+.++.++++.|+++.++.+.|+|++ +|+...+.+++|+|++|++|++++.|+.
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~i-THdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMI-THDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEE-ECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999987667888776 4556777889999999999999999999
Q ss_pred hhHHH
Q 000860 232 AEVLE 236 (1250)
Q Consensus 232 ~~~~~ 236 (1250)
+++.+
T Consensus 247 ~~i~~ 251 (330)
T PRK09473 247 RDVFY 251 (330)
T ss_pred HHHHh
Confidence 98753
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=296.81 Aligned_cols=191 Identities=29% Similarity=0.467 Sum_probs=155.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHccCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~ 77 (1250)
+++|+||||||||||+++|+|+.+|. +|+|.++|.++... ..++.++|++|++.+++.+||+||+.++......
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~ 106 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL 106 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC
Confidence 47999999999999999999999864 99999999887432 2346799999998887889999999885421110
Q ss_pred CcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHH
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA 157 (1250)
... + .+..++++++.+||.+..++.+++ |||||||||+||
T Consensus 107 ~~~-----------~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgGe~qrv~la 146 (258)
T PRK13548 107 SRA-----------E------------------------DDALVAAALAQVDLAHLAGRDYPQ-----LSGGEQQRVQLA 146 (258)
T ss_pred CcH-----------H------------------------HHHHHHHHHHHcCCHhHhcCCccc-----CCHHHHHHHHHH
Confidence 000 0 011256788999998777777654 999999999999
Q ss_pred HHHh------cCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecCh
Q 000860 158 EMIV------GPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPR 231 (1250)
Q Consensus 158 ~al~------~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~ 231 (1250)
|||+ .+|++|+|||||+|||+.++..+.+.|+++.++.++|+|++. |+..++.+++|++++|++|++++.|++
T Consensus 147 ~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (258)
T PRK13548 147 RVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVL-HDLNLAARYADRIVLLHQGRLVADGTP 225 (258)
T ss_pred HHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEE-CCHHHHHHhcCEEEEEECCEEEeeCCH
Confidence 9999 599999999999999999999999999998744578887775 556778889999999999999999998
Q ss_pred hhHH
Q 000860 232 AEVL 235 (1250)
Q Consensus 232 ~~~~ 235 (1250)
+++.
T Consensus 226 ~~~~ 229 (258)
T PRK13548 226 AEVL 229 (258)
T ss_pred HHHh
Confidence 7764
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=291.01 Aligned_cols=183 Identities=28% Similarity=0.372 Sum_probs=152.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcccccceEEeeccccccCCCCCHHHHHHHHHHccCCCcc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGANDS 80 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~~ 80 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.... .+.++|++|++.+++.+|++||+.+.....+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~-- 101 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLLGLP-- 101 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcCCC--
Confidence 47999999999999999999999864 999999998875332 357999999988888899999998764322100
Q ss_pred hhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHHH
Q 000860 81 FAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI 160 (1250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~al 160 (1250)
+..+.++++.+||.+..+..+++ ||||||||++||||+
T Consensus 102 -------------------------------------~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~~rv~laral 139 (223)
T TIGR03740 102 -------------------------------------DSRIDEVLNIVDLTNTGKKKAKQ-----FSLGMKQRLGIAIAL 139 (223)
T ss_pred -------------------------------------HHHHHHHHHHcCCcHHHhhhHhh-----CCHHHHHHHHHHHHH
Confidence 01245678889998777766654 999999999999999
Q ss_pred hcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhh
Q 000860 161 VGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233 (1250)
Q Consensus 161 ~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~ 233 (1250)
+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.| +..++.+.+|++++|++|++++.|++.+
T Consensus 140 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH-~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 140 LNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSH-ILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred hcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcC-CHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999999999999865 4778877754 4667788999999999999999998653
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=288.89 Aligned_cols=186 Identities=25% Similarity=0.346 Sum_probs=152.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc-cccceEEeeccccccCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF-QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~-~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+..... ...
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~-~~~ 101 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPG-LKL 101 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhcc-CCc
Confidence 47999999999999999999999865 99999999987532 24567999999999998899999998753211 000
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
. .. .+.+++++++.+||.+..++.+.+ ||||||||++||||
T Consensus 102 ~---------~~-------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~lara 142 (213)
T TIGR01277 102 N---------AE-------------------------QQEKVVDAAQQVGIADYLDRLPEQ-----LSGGQRQRVALARC 142 (213)
T ss_pred c---------HH-------------------------HHHHHHHHHHHcCcHHHhhCCccc-----CCHHHHHHHHHHHH
Confidence 0 00 011256788999998777776654 99999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecC
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGP 230 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~ 230 (1250)
|+.+|++++|||||+|||+.++..+.+.|+++.++.+.|+|++. |+..++.+.+|++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vs-h~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVT-HHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999999998765577888764 45667778999999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-32 Score=262.59 Aligned_cols=191 Identities=21% Similarity=0.297 Sum_probs=154.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc----------------cccceEEeeccccccCCCCCH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF----------------QVQRASAYIGQTDNHIAELTV 64 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~----------------~~~~~~~yv~Q~~~~~~~~TV 64 (1250)
++.|+|.|||||||+|+||.=+..|+ .|.|.+||..+... .+|...+.|.|+..++..+||
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE~P~---~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtv 110 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLEKPS---AGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTV 110 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhcCCC---CceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHH
Confidence 36899999999999999999888765 99999999876311 124567999999999999999
Q ss_pred HHHHHHHHHccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccc
Q 000860 65 RETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLR 144 (1250)
Q Consensus 65 ~e~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~ 144 (1250)
.||+.-+.. + .....+.+ ..++.+..|+..||.+..|....
T Consensus 111 LeNViEaPv-h---------VLg~~k~e------------------------a~e~Ae~~L~kVGi~ek~~~YP~----- 151 (256)
T COG4598 111 LENVIEAPV-H---------VLGVSKAE------------------------AIERAEKYLAKVGIAEKADAYPA----- 151 (256)
T ss_pred HHHHHhcch-H---------hhcCCHHH------------------------HHHHHHHHHHHhCchhhhhcCcc-----
Confidence 999864321 0 00001100 11236678999999888876544
Q ss_pred cCccccchhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCe
Q 000860 145 GVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGY 224 (1250)
Q Consensus 145 ~LSGGqkqRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~ 224 (1250)
.|||||+||++|||||+.+|+++++|||||+|||.-.-++++.+++++++ |+|.++++| .....-+...+|+.|.+|.
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTH-EM~FAR~Vss~v~fLh~G~ 229 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTH-EMGFARDVSSHVIFLHQGK 229 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEee-ehhHHHhhhhheEEeecce
Confidence 49999999999999999999999999999999999999999999999975 889888754 4666667889999999999
Q ss_pred EEeecChhhHH
Q 000860 225 LVYQGPRAEVL 235 (1250)
Q Consensus 225 i~~~G~~~~~~ 235 (1250)
|-++|+|+++.
T Consensus 230 iEE~G~P~qvf 240 (256)
T COG4598 230 IEEEGPPEQVF 240 (256)
T ss_pred ecccCChHHHh
Confidence 99999999874
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=294.98 Aligned_cols=192 Identities=23% Similarity=0.359 Sum_probs=153.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCeecCcc-----cccceEEeeccccccCCCCCHHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGN--LNKSGSITYNGWELDEF-----QVQRASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~--~~~~G~v~~~g~~~~~~-----~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~ 73 (1250)
+++|+||||||||||+++|+|+++|. .+.+|+|.++|.++... ..++.++|++|++.+++ .||+||+.++..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~ 107 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPR 107 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHH
Confidence 47999999999999999999999752 11289999999987531 23567999999988888 999999988654
Q ss_pred ccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCc----cccccccCCCccccCccc
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLD----LCSDTVVGSEMLRGVSGG 149 (1250)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~~t~vg~~~~~~LSGG 149 (1250)
.++.... .+ ....++.+++.+||. +..++.++ .||||
T Consensus 108 ~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~~~~-----~LSgG 148 (247)
T TIGR00972 108 LHGIKDK----------KE------------------------LDEIVEESLKKAALWDEVKDRLHDSAL-----GLSGG 148 (247)
T ss_pred hcCCCCH----------HH------------------------HHHHHHHHHHHcCCCcchhhHhhCCcc-----cCCHH
Confidence 3211000 00 001256778889997 55555554 49999
Q ss_pred cchhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeec
Q 000860 150 QKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229 (1250)
Q Consensus 150 qkqRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G 229 (1250)
||||++|||||+.+|+++||||||+|||+.++..+.+.|+++.+ ++|+|++. |+..++.+.+|++++|++|++++.|
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivs-H~~~~~~~~~d~i~~l~~G~i~~~~ 225 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVT-HNMQQAARISDRTAFFYDGELVEYG 225 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEe-cCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999865 36777764 5567788899999999999999999
Q ss_pred ChhhHH
Q 000860 230 PRAEVL 235 (1250)
Q Consensus 230 ~~~~~~ 235 (1250)
+++++.
T Consensus 226 ~~~~~~ 231 (247)
T TIGR00972 226 PTEQIF 231 (247)
T ss_pred CHHHHH
Confidence 988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=297.08 Aligned_cols=206 Identities=20% Similarity=0.291 Sum_probs=157.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc----ccceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ----VQRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.... .+..++|++|++.+++.+||+||+.++.....
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 109 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQL 109 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccc
Confidence 47999999999999999999999864 999999999875422 23458999999999999999999998643110
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
.. .. ....... ....... .+....+++.++.+||.+..++.+++ ||||||||++|
T Consensus 110 ~~-~~---~~~~~~~---~~~~~~~-------------~~~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~l 164 (255)
T PRK11300 110 KT-GL---FSGLLKT---PAFRRAE-------------SEALDRAATWLERVGLLEHANRQAGN-----LAYGQQRRLEI 164 (255)
T ss_pred cc-hh---hhhhccc---cccccch-------------hHHHHHHHHHHHhCChhhhhhCChhh-----CCHHHHHHHHH
Confidence 00 00 0000000 0000000 00012356778999998777777654 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
||||+.+|++|||||||+|||+.++..+.+.|+++.++.++|+|++. |+..++.+.+|++++|++|++++.|+++++.
T Consensus 165 a~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~s-H~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 165 ARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIE-HDMKLVMGISDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe-CCHHHHHHhCCEEEEEECCeEEecCCHHHHh
Confidence 99999999999999999999999999999999998765477888775 5567788899999999999999999988763
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=285.48 Aligned_cols=166 Identities=44% Similarity=0.776 Sum_probs=140.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc--cccceEEeeccccccCCCCCHHHHHHHHHHccCCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF--QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~--~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~ 78 (1250)
+++|+||||||||||+++|+|+++|..+.+|+|.++|.++... ..++.++|++|++.+++.+||+||+.++....
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--- 111 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--- 111 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc---
Confidence 4799999999999999999999984334599999999987543 34567999999999999999999998753210
Q ss_pred cchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHH
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~ 158 (1250)
.+..+ ..||||||||++|||
T Consensus 112 -------------------------------------------------------~~~~~-----~~LS~Ge~qrl~lar 131 (202)
T cd03233 112 -------------------------------------------------------GNEFV-----RGISGGERKRVSIAE 131 (202)
T ss_pred -------------------------------------------------------cccch-----hhCCHHHHHHHHHHH
Confidence 01222 349999999999999
Q ss_pred HHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeec
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229 (1250)
Q Consensus 159 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G 229 (1250)
||+.+|+++||||||+|||+.++..+.+.|+++.++.+.|+|+++||+.+++.+.+|++++|++|++++.|
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999876546788887788778899999999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=297.48 Aligned_cols=190 Identities=21% Similarity=0.303 Sum_probs=154.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccc-cCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDN-HIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~-~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++. +++..|+++|+.++....+
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~ 113 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA 113 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC
Confidence 47999999999999999999999864 99999999987432 34567999999864 6788899999988643221
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
.... + ....++++++.+|+.+..++.++ .||||||||++|
T Consensus 114 ~~~~-----------~------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrl~l 153 (269)
T PRK13648 114 VPYD-----------E------------------------MHRRVSEALKQVDMLERADYEPN-----ALSGGQKQRVAI 153 (269)
T ss_pred CCHH-----------H------------------------HHHHHHHHHHHcCCchhhhCCcc-----cCCHHHHHHHHH
Confidence 1000 0 00125678899999877776654 499999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|||++.+|+++||||||+|||+.++..+.+.|+++.++.++|+|++.|+ ..++.. +|++++|++|++++.|+++++.
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~-~~~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD-LSEAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-chHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999876557888887655 455654 9999999999999999988764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=294.87 Aligned_cols=188 Identities=23% Similarity=0.396 Sum_probs=151.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc----ccceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ----VQRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++.+++..||+||+.++....
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~- 108 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA- 108 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-
Confidence 47999999999999999999999864 999999999875432 3467999999998999899999998753211
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHh-CCccccccccCCCccccCccccchhhH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVL-GLDLCSDTVVGSEMLRGVSGGQKKRVT 155 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqkqRv~ 155 (1250)
... .. +..++++++.+ ++.+..++.+. .||||||||++
T Consensus 109 -~~~------~~-----------------------------~~~~~~~l~~~~~l~~~~~~~~~-----~LS~G~~qrl~ 147 (237)
T PRK11614 109 -ERD------QF-----------------------------QERIKWVYELFPRLHERRIQRAG-----TMSGGEQQMLA 147 (237)
T ss_pred -Chh------HH-----------------------------HHHHHHHHHHHHHHHHHHhCchh-----hCCHHHHHHHH
Confidence 000 00 00134455666 46555555443 49999999999
Q ss_pred HHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 156 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 156 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .++|+|++. |+..++.+.+|++++|++|++++.|+++++.
T Consensus 148 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 148 IGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVE-QNANQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 99999999999999999999999999999999999875 478888764 5567788999999999999999999988764
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=294.89 Aligned_cols=191 Identities=26% Similarity=0.355 Sum_probs=156.0
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc----------------cccceEEeeccccccCCCCCH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF----------------QVQRASAYIGQTDNHIAELTV 64 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~----------------~~~~~~~yv~Q~~~~~~~~TV 64 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++.+++..||
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 104 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTV 104 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcH
Confidence 47999999999999999999999864 99999999887421 235679999999999999999
Q ss_pred HHHHHHHHHc-cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCcc
Q 000860 65 RETLDFAARC-QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEML 143 (1250)
Q Consensus 65 ~e~l~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 143 (1250)
.||+.++... .+.. ..+ ....++++++.+|+.+..+..+.
T Consensus 105 ~~nl~~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~---- 145 (252)
T TIGR03005 105 LDNVTEAPVLVLGMA-----------RAE------------------------AEKRAMELLDMVGLADKADHMPA---- 145 (252)
T ss_pred HHHHHHHHHHhcCCC-----------HHH------------------------HHHHHHHHHHHcCChhHhhcChh----
Confidence 9999875321 1100 000 00125678889999877666554
Q ss_pred ccCccccchhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCC
Q 000860 144 RGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDG 223 (1250)
Q Consensus 144 ~~LSGGqkqRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G 223 (1250)
.||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++.++.+.|+|++. |+..++.+++|++++|++|
T Consensus 146 -~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivs-H~~~~~~~~~d~i~~l~~G 223 (252)
T TIGR03005 146 -QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVT-HEMGFAREFADRVCFFDKG 223 (252)
T ss_pred -hcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe-CCHHHHHHhcCEEEEEECC
Confidence 49999999999999999999999999999999999999999999998765577888775 4567777899999999999
Q ss_pred eEEeecChhhHH
Q 000860 224 YLVYQGPRAEVL 235 (1250)
Q Consensus 224 ~i~~~G~~~~~~ 235 (1250)
++++.|+++++.
T Consensus 224 ~i~~~g~~~~~~ 235 (252)
T TIGR03005 224 RIVEQGKPDEIF 235 (252)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=333.82 Aligned_cols=193 Identities=25% Similarity=0.396 Sum_probs=153.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHccCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~ 77 (1250)
.+||+|||||||||++++|+|+++|. +|+|.+||.|+++. .+|+.++||+|++.+|. .||+|||.++..- .
T Consensus 357 ~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~--a 430 (567)
T COG1132 357 KVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPD--A 430 (567)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCC--C
Confidence 37999999999999999999999965 99999999998654 46889999999977776 8999999986321 0
Q ss_pred CcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHH
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA 157 (1250)
.. +++.+..+. . ..++.++ .+++++||.||+++ ..||||||||++||
T Consensus 431 --t~----eei~~a~k~------------------a------~~~d~I~--~lp~g~dt~vge~G-~~LSgGQrQrlaiA 477 (567)
T COG1132 431 --TD----EEIEEALKL------------------A------NAHEFIA--NLPDGYDTIVGERG-VNLSGGQRQRLAIA 477 (567)
T ss_pred --CH----HHHHHHHHH------------------h------ChHHHHH--hCcccccceecCCC-ccCCHHHHHHHHHH
Confidence 00 111111100 0 0122233 34778999999654 45999999999999
Q ss_pred HHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 158 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||++++|+||+||||||+||+.++..|.+.++++.+ ++|++++.|+ . ...+.+|+|++|++|++++.|+++++.+
T Consensus 478 Rall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHR-l-sti~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 478 RALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHR-L-STIKNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEecc-H-hHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999998763 5677775443 3 5556699999999999999999999875
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=298.58 Aligned_cols=201 Identities=24% Similarity=0.347 Sum_probs=157.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc--------cccceEEeeccccccCCCCCHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF--------QVQRASAYIGQTDNHIAELTVRETLDFAA 72 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~--------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~ 72 (1250)
+++|+||||||||||+++|+|+++|....+|+|.++|.++... ..++.++|++|++.+++.+||+||+.++.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 111 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA 111 (262)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhh
Confidence 4799999999999999999999986423469999999887421 22457999999988899899999998753
Q ss_pred HccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccch
Q 000860 73 RCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKK 152 (1250)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkq 152 (1250)
... .......... ..+ ..+.+++++++.+||.+..+..++. |||||||
T Consensus 112 ~~~---~~~~~~~~~~----------~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~q 159 (262)
T PRK09984 112 LGS---TPFWRTCFSW----------FTR--------------EQKQRALQALTRVGMVHFAHQRVST-----LSGGQQQ 159 (262)
T ss_pred ccc---ccchhhhccc----------ccH--------------HHHHHHHHHHHHcCCHHHHhCCccc-----cCHHHHH
Confidence 210 0000000000 000 0012367789999998777777654 9999999
Q ss_pred hhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChh
Q 000860 153 RVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRA 232 (1250)
Q Consensus 153 Rv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~ 232 (1250)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++.|+|+|++. |+...+.+.+|++++|++|++++.|+++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~t-H~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTL-HQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999765577888775 4566788899999999999999999987
Q ss_pred hH
Q 000860 233 EV 234 (1250)
Q Consensus 233 ~~ 234 (1250)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 64
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=296.36 Aligned_cols=191 Identities=22% Similarity=0.311 Sum_probs=154.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc------ccceEEeecccc--ccCCCCCHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ------VQRASAYIGQTD--NHIAELTVRETLDFAA 72 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~~~~~~yv~Q~~--~~~~~~TV~e~l~f~~ 72 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.... .++.++|++|++ .+++.+||+||+.+..
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 115 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPL 115 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHH
Confidence 47999999999999999999999864 999999999875321 356799999986 4667899999997754
Q ss_pred Hcc-CCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCc-cccccccCCCccccCcccc
Q 000860 73 RCQ-GANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLD-LCSDTVVGSEMLRGVSGGQ 150 (1250)
Q Consensus 73 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGq 150 (1250)
... ... ..+ .+.+++++++.+||. +..+..++ +|||||
T Consensus 116 ~~~~~~~-----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGe 155 (265)
T TIGR02769 116 RHLTSLD-----------ESE------------------------QKARIAELLDMVGLRSEDADKLPR-----QLSGGQ 155 (265)
T ss_pred HHhcCCC-----------HHH------------------------HHHHHHHHHHHcCCChhhhhCChh-----hCCHHH
Confidence 211 000 000 011356788999995 55666654 499999
Q ss_pred chhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecC
Q 000860 151 KKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGP 230 (1250)
Q Consensus 151 kqRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~ 230 (1250)
||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++.++|+|++. |+...+.+++|++++|++|++++.|+
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivs-H~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFIT-HDLRLVQSFCQRVAVMDKGQIVEECD 234 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe-CCHHHHHHHhcEEEEEeCCEEEEECC
Confidence 99999999999999999999999999999999999999998765578887774 55677778999999999999999999
Q ss_pred hhhHH
Q 000860 231 RAEVL 235 (1250)
Q Consensus 231 ~~~~~ 235 (1250)
++++.
T Consensus 235 ~~~~~ 239 (265)
T TIGR02769 235 VAQLL 239 (265)
T ss_pred HHHHc
Confidence 98864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=325.84 Aligned_cols=206 Identities=27% Similarity=0.362 Sum_probs=165.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCCCeeEEEEEECCccC
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++++++. ++++|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.+++.
T Consensus 4 ~i~~~nls~~~~~------------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~-- 67 (552)
T TIGR03719 4 IYTMNRVSKVVPP------------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAPG-- 67 (552)
T ss_pred EEEEeeEEEecCC------------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC--
Confidence 5899999998741 2468999999999999999999999999999999999876 35799998752
Q ss_pred CcccccceEEEEcCCCCCCCCCCHHHHHHHHHhc-C-----------CCCCCCHH---------------------HHHH
Q 000860 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANL-R-----------LPKEISKD---------------------QRHE 775 (1250)
Q Consensus 729 ~~~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l-~-----------~~~~~~~~---------------------~~~~ 775 (1250)
..+|||+|++.+++.+||+|++.+.... + .......+ ....
T Consensus 68 ------~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (552)
T TIGR03719 68 ------IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDR 141 (552)
T ss_pred ------CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHH
Confidence 4589999999888999999999874210 0 00000010 0124
Q ss_pred HHHHHHHHcCCcccccccccCCCCCcCCHHHHHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHHHhhCCCEEE
Q 000860 776 FVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVV 855 (1250)
Q Consensus 776 ~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGerqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi 855 (1250)
+++++++.+++.. .++.++ .||||||||++|||+|+.+|++|+|||||++||+.++..+.+.|+++ +.|||
T Consensus 142 ~~~~~l~~~~l~~-~~~~~~-----~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvI 212 (552)
T TIGR03719 142 KLEIAMDALRCPP-WDADVT-----KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVV 212 (552)
T ss_pred HHHHHHhhCCCCc-ccCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEE
Confidence 5667777888853 455554 49999999999999999999999999999999999999999999876 35999
Q ss_pred EEecCCCHHHHHhhcceeeeecCcEE-EEeCCC
Q 000860 856 CTIHQPSIEIFEAFDELLLMKRGGRV-IYGGKL 887 (1250)
Q Consensus 856 ~~~H~~~~~~~~~~d~v~~l~~gg~~-~~~g~~ 887 (1250)
+++|++. .+...+|++++|.+ |++ .+.|+.
T Consensus 213 iisHd~~-~~~~~~d~v~~l~~-g~i~~~~g~~ 243 (552)
T TIGR03719 213 AVTHDRY-FLDNVAGWILELDR-GRGIPWEGNY 243 (552)
T ss_pred EEeCCHH-HHHhhcCeEEEEEC-CEEEEecCCH
Confidence 9999975 57778999999986 564 477775
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=294.47 Aligned_cols=186 Identities=23% Similarity=0.407 Sum_probs=151.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHccCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~ 77 (1250)
+++|+||||||||||+++|+|+.+|. +|+|.++|.++... ..++.++|++|++.+++ .||+||+.++....+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~- 105 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG- 105 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC-
Confidence 47999999999999999999999864 99999999887432 33567999999987776 699999976432110
Q ss_pred CcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCc-cccccccCCCccccCccccchhhHH
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLD-LCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
. . +.+++++++.+||+ +..++.+. .||||||||++|
T Consensus 106 --~--------~----------------------------~~~~~~~l~~~~l~~~~~~~~~~-----~LS~G~~qrl~l 142 (241)
T PRK14250 106 --E--------K----------------------------NVDVEYYLSIVGLNKEYATRDVK-----NLSGGEAQRVSI 142 (241)
T ss_pred --c--------H----------------------------HHHHHHHHHHcCCCHHHhhCCcc-----cCCHHHHHHHHH
Confidence 0 0 01245678888996 44555444 499999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
||||+.+|+++||||||+|||+.++..+.+.|+++.++.|+|+|++. |+..++.+.+|+|++|++|+++..|+++++.
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~s-H~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 143 ARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWIT-HNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe-ccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999998764578887764 5567788899999999999999999988763
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-31 Score=290.88 Aligned_cols=191 Identities=26% Similarity=0.415 Sum_probs=157.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc-ccceEEeeccccccCCCCCHHHHHHHHHHccCCCc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~-~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~~ 79 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++.+|+.||+.++....+...
T Consensus 27 ~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~ 103 (235)
T cd03299 27 YFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDK 103 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcCCCH
Confidence 47999999999999999999999865 999999999875422 35679999999888989999999987643221100
Q ss_pred chhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHHH
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~a 159 (1250)
.+ . ...+.++++.+||.+..++.+.+ ||||||||++||||
T Consensus 104 -----------~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~lara 143 (235)
T cd03299 104 -----------KE----------I--------------ERKVLEIAEMLGIDHLLNRKPET-----LSGGEQQRVAIARA 143 (235)
T ss_pred -----------HH----------H--------------HHHHHHHHHHcCChhHHhcCccc-----CCHHHHHHHHHHHH
Confidence 00 0 01245678889998877777654 99999999999999
Q ss_pred HhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 160 l~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|+.+|++++|||||+|||+.++..+++.|++++++.++|+|++.|+ ..++.+.+|++++|++|++++.|+++++.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~-~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD-FEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999876557888887554 56778899999999999999999987764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=298.85 Aligned_cols=191 Identities=22% Similarity=0.341 Sum_probs=155.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc----cccceEEeeccccc-cCCCCCHHHHHHHHHHcc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF----QVQRASAYIGQTDN-HIAELTVRETLDFAARCQ 75 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~----~~~~~~~yv~Q~~~-~~~~~TV~e~l~f~~~~~ 75 (1250)
+++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..++.++|++|++. .+...||.||+.|+....
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~ 114 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL 114 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc
Confidence 47999999999999999999999865 99999999987532 24677999999863 333569999998875322
Q ss_pred CCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhH
Q 000860 76 GANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVT 155 (1250)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ 155 (1250)
+... .+ .+.+++++++.+||.+..++.++. ||||||||++
T Consensus 115 ~~~~-----------~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~-----LS~G~~qrv~ 154 (280)
T PRK13633 115 GIPP-----------EE------------------------IRERVDESLKKVGMYEYRRHAPHL-----LSGGQKQRVA 154 (280)
T ss_pred CCCH-----------HH------------------------HHHHHHHHHHHCCCHhHhhCCccc-----CCHHHHHHHH
Confidence 1110 00 011367789999998888887754 9999999999
Q ss_pred HHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 156 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 156 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|||||+.+|+++||||||+|||+.++..+.+.|+++.++.+.|+|++.|+ ..++.. +|++++|++|++++.|+++++.
T Consensus 155 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~-~~~~~~-~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 155 IAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHY-MEEAVE-ADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-hHHHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999999876557888887555 455554 9999999999999999998875
Q ss_pred H
Q 000860 236 E 236 (1250)
Q Consensus 236 ~ 236 (1250)
.
T Consensus 233 ~ 233 (280)
T PRK13633 233 K 233 (280)
T ss_pred c
Confidence 3
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=288.74 Aligned_cols=179 Identities=28% Similarity=0.433 Sum_probs=144.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccc-cCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDN-HIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~-~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++. .++.+||+||+.++....+
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~ 105 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG 105 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC
Confidence 47999999999999999999999864 99999999887532 23567999999864 4667899999987643221
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
... .+ .+..++++++.+||.+..++.++. |||||||||+|
T Consensus 106 ~~~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrv~l 145 (211)
T cd03225 106 LPE-----------EE------------------------IEERVEEALELVGLEGLRDRSPFT-----LSGGQKQRVAI 145 (211)
T ss_pred CCH-----------HH------------------------HHHHHHHHHHHcCcHhhhcCCccc-----CCHHHHHHHHH
Confidence 100 00 001256788899998777776654 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCe
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGY 224 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~ 224 (1250)
||||+.+|++++|||||+|||+.++..+.+.|++++++ ++|+|++. |+..++..++|++++|++|+
T Consensus 146 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~s-H~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 146 AGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVT-HDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEe-CCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999998764 77887775 45677778899999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=297.87 Aligned_cols=190 Identities=26% Similarity=0.397 Sum_probs=153.3
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCc--c---cccceEEeeccccc-cCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDE--F---QVQRASAYIGQTDN-HIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~--~---~~~~~~~yv~Q~~~-~~~~~TV~e~l~f~~~~ 74 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.. . ..++.++|++|++. .+...|+.||+.++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~ 105 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRN 105 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHH
Confidence 47999999999999999999999865 9999999998741 1 23567999999864 24456899999886432
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 154 (1250)
.+.... + ....++++++.+||.+..++.++. ||||||||+
T Consensus 106 ~~~~~~-----------~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~qrl 145 (271)
T PRK13638 106 LGVPEA-----------E------------------------ITRRVDEALTLVDAQHFRHQPIQC-----LSHGQKKRV 145 (271)
T ss_pred cCCCHH-----------H------------------------HHHHHHHHHHHcCCHhHhcCCchh-----CCHHHHHHH
Confidence 211000 0 001256788899998777776654 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhH
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 155 ~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~ 234 (1250)
+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .++|+|++. |+..++.+++|++++|++|++++.|+++++
T Consensus 146 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vt-H~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 146 AIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISS-HDIDLIYEISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEe-CCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999875 477877764 556778889999999999999999998876
Q ss_pred H
Q 000860 235 L 235 (1250)
Q Consensus 235 ~ 235 (1250)
.
T Consensus 224 ~ 224 (271)
T PRK13638 224 F 224 (271)
T ss_pred h
Confidence 4
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=298.64 Aligned_cols=189 Identities=23% Similarity=0.354 Sum_probs=154.2
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc----cccceEEeeccccc-cCCCCCHHHHHHHHHHcc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF----QVQRASAYIGQTDN-HIAELTVRETLDFAARCQ 75 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~----~~~~~~~yv~Q~~~-~~~~~TV~e~l~f~~~~~ 75 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++. .+...||.||+.++....
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 106 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL 106 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc
Confidence 47999999999999999999999864 99999999987532 23567999999864 466789999998865322
Q ss_pred CCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhH
Q 000860 76 GANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVT 155 (1250)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~ 155 (1250)
+... .+ ..+.++++++.+||.+..++.++. ||||||||++
T Consensus 107 ~~~~-----------~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS~G~~qrv~ 146 (274)
T PRK13644 107 CLPP-----------IE------------------------IRKRVDRALAEIGLEKYRHRSPKT-----LSGGQGQCVA 146 (274)
T ss_pred CCCH-----------HH------------------------HHHHHHHHHHHCCCHHHhcCCccc-----CCHHHHHHHH
Confidence 1100 00 011256788999998877777654 9999999999
Q ss_pred HHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 156 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 156 iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
|||||+.+|+++||||||+|||+.++..+++.|+++.+ .|.|+|++.|+ ..++ ..+|++++|++|++++.|+++++.
T Consensus 147 laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~-~~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 147 LAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHN-LEEL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecC-HHHH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999875 47888887554 5555 569999999999999999988764
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=298.09 Aligned_cols=190 Identities=25% Similarity=0.339 Sum_probs=154.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccc-cCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDN-HIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~-~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||||||||+++|+|+.+|. +|+|.++|.++... ..++.++|++|++. .++.+||+||+.++....+
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~ 113 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK 113 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC
Confidence 47999999999999999999999864 99999999987532 34667999999863 6778899999988643211
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
... .+ .+..++++++.+||.+..++.++. ||||||||++|
T Consensus 114 ~~~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrl~l 153 (271)
T PRK13632 114 VPP-----------KK------------------------MKDIIDDLAKKVGMEDYLDKEPQN-----LSGGQKQRVAI 153 (271)
T ss_pred CCH-----------HH------------------------HHHHHHHHHHHcCCHHHhhCCccc-----CCHHHHHHHHH
Confidence 100 00 011256788999998877777654 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
||||+.+|++|+|||||+|||+.++..+++.|+++.++.++|+|++.|++ .++ ..+|++++|++|++++.|+.+++.
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM-DEA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEech-hHH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999998765457888876654 445 479999999999999999987754
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=255.90 Aligned_cols=181 Identities=27% Similarity=0.374 Sum_probs=153.7
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc------c-cceEEeeccccccCCCCCHHHHHHHHHHc
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ------V-QRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 2 ~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~-~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~ 74 (1250)
++|||||||||||||-+++|+..|+ +|+|.+.|+++.... . .+.+|+|+|-..++|++|..||+...+.+
T Consensus 39 vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL 115 (228)
T COG4181 39 VAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLEL 115 (228)
T ss_pred EEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhh
Confidence 6999999999999999999999865 999999999885432 2 46799999999999999999999988777
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 154 (1250)
++-.... ........|+.+||.+..+...+ +|||||+|||
T Consensus 116 ~ge~~~~-----------------------------------~~~~A~~lL~~vGLg~Rl~HyP~-----qLSGGEQQRV 155 (228)
T COG4181 116 RGESSAD-----------------------------------SRAGAKALLEAVGLGKRLTHYPA-----QLSGGEQQRV 155 (228)
T ss_pred cCCcccc-----------------------------------HHHHHHHHHHHhCcccccccCcc-----ccCchHHHHH
Confidence 6521110 01124567899999887776654 5999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEe
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVY 227 (1250)
Q Consensus 155 ~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~ 227 (1250)
+||||+...|+||+-||||-+||..+..+|.+.|-.+.++.|.|.|+++|.+ ....-|||.+-|.+|+++.
T Consensus 156 AiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 156 ALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999999999888899988886654 5667899999999999875
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=335.13 Aligned_cols=193 Identities=25% Similarity=0.390 Sum_probs=152.8
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHccCCC
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 2 ~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~ 78 (1250)
++|+||||||||||+++|+|+++|. +|+|.+||.++++. ..++.++||||++.+|+ .|++|||.++.. ..
T Consensus 372 ~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~---~~ 444 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYART---EQ 444 (582)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCCC---CC
Confidence 7999999999999999999999975 99999999998653 35788999999987776 699999987521 00
Q ss_pred cchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHH
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~ 158 (1250)
.+. .++.... +.+ -.++.++ .|++..||.+|+++ +.||||||||++|||
T Consensus 445 ~~~----~~i~~al---------------~~~---------~l~~~i~--~lp~Gldt~ig~~g-~~LSGGqrQRi~LAR 493 (582)
T PRK11176 445 YSR----EQIEEAA---------------RMA---------YAMDFIN--KMDNGLDTVIGENG-VLLSGGQRQRIAIAR 493 (582)
T ss_pred CCH----HHHHHHH---------------HHh---------CcHHHHH--hcccccCceeCCCC-CcCCHHHHHHHHHHH
Confidence 010 0000000 000 0111222 26678899999764 569999999999999
Q ss_pred HHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 159 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|++.|++ +..+.||+|++|++|++++.|+++++.+
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999998743 68888876654 6778899999999999999999999864
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=293.52 Aligned_cols=194 Identities=25% Similarity=0.330 Sum_probs=153.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHcc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGN--LNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQ 75 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~--~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~ 75 (1250)
+++|+||||||||||+++|+|+++|. .+.+|+|.++|.++... ..++.++|++|++.+++.+||+||+.++....
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~ 110 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLN 110 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhc
Confidence 47999999999999999999998741 13599999999987432 34567999999988888999999998865322
Q ss_pred CCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCcc----ccccccCCCccccCccccc
Q 000860 76 GANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDL----CSDTVVGSEMLRGVSGGQK 151 (1250)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~~t~vg~~~~~~LSGGqk 151 (1250)
...... .+ ..+.++++++.+||.+ ..++.+ .+||||||
T Consensus 111 ~~~~~~---------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LSgG~~ 152 (250)
T PRK14247 111 RLVKSK---------KE------------------------LQERVRWALEKAQLWDEVKDRLDAPA-----GKLSGGQQ 152 (250)
T ss_pred cccCCH---------HH------------------------HHHHHHHHHHHcCCCcchhhhhcCCc-----ccCCHHHH
Confidence 110000 00 0112567788888853 345544 44999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecCh
Q 000860 152 KRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPR 231 (1250)
Q Consensus 152 qRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~ 231 (1250)
|||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++. |+..++.+.+|++++|++|++++.|++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVT-HFPQQAARISDYVAFLYKGQIVEWGPT 229 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEe-CCHHHHHHhcCEEEEEECCeEEEECCH
Confidence 999999999999999999999999999999999999999853 67777764 556677789999999999999999998
Q ss_pred hhHH
Q 000860 232 AEVL 235 (1250)
Q Consensus 232 ~~~~ 235 (1250)
+++.
T Consensus 230 ~~~~ 233 (250)
T PRK14247 230 REVF 233 (250)
T ss_pred HHHH
Confidence 8764
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=289.21 Aligned_cols=181 Identities=25% Similarity=0.315 Sum_probs=147.6
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc------cccceEEeeccccccCCCCCHHHHHHHHHHc
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~------~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~ 74 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++.+++..|++||+.+....
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLII 106 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHh
Confidence 47999999999999999999999864 99999999987532 1356799999998888899999999886533
Q ss_pred cCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhh
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv 154 (1250)
.+... .+ ....++++++.+||.+..++.+++ ||||||||+
T Consensus 107 ~~~~~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~~qrv 146 (222)
T PRK10908 107 AGASG-----------DD------------------------IRRRVSAALDKVGLLDKAKNFPIQ-----LSGGEQQRV 146 (222)
T ss_pred cCCCH-----------HH------------------------HHHHHHHHHHHcCChhhhhCCchh-----CCHHHHHHH
Confidence 21110 00 001245678889998766766544 999999999
Q ss_pred HHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEE
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLV 226 (1250)
Q Consensus 155 ~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~ 226 (1250)
+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ +.|+|++ +|+..++...+|++++|++|+++
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~-sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 147 GIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMA-THDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHhCCEEEEEECCEEc
Confidence 9999999999999999999999999999999999998654 6777776 45567788889999999999975
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=297.96 Aligned_cols=190 Identities=22% Similarity=0.299 Sum_probs=151.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc-------cccceEEeeccccc-cCCCCCHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF-------QVQRASAYIGQTDN-HIAELTVRETLDFAA 72 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~-------~~~~~~~yv~Q~~~-~~~~~TV~e~l~f~~ 72 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++... ..++.++|++|++. .+...||+||+.++.
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~ 111 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGP 111 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHH
Confidence 47999999999999999999999864 99999999987431 23567999999852 333479999998864
Q ss_pred HccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCc-cccccccCCCccccCccccc
Q 000860 73 RCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLD-LCSDTVVGSEMLRGVSGGQK 151 (1250)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqk 151 (1250)
...+... .+ ....++++++.+||. ...+..++ .||||||
T Consensus 112 ~~~~~~~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~ 151 (280)
T PRK13649 112 QNFGVSQ-----------EE------------------------AEALAREKLALVGISESLFEKNPF-----ELSGGQM 151 (280)
T ss_pred HHcCCCH-----------HH------------------------HHHHHHHHHHHcCCChhhhhCCcc-----cCCHHHH
Confidence 3221100 00 001256678889996 34566554 4999999
Q ss_pred hhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecCh
Q 000860 152 KRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPR 231 (1250)
Q Consensus 152 qRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~ 231 (1250)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ .++|+|++.| +..++.+.+|++++|++|++++.|++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH-~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTH-LMDDVANYADFVYVLEKGKLVLSGKP 229 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEec-cHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999875 4788887754 46677789999999999999999998
Q ss_pred hhHH
Q 000860 232 AEVL 235 (1250)
Q Consensus 232 ~~~~ 235 (1250)
+++.
T Consensus 230 ~~~~ 233 (280)
T PRK13649 230 KDIF 233 (280)
T ss_pred HHHh
Confidence 8764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-31 Score=289.43 Aligned_cols=183 Identities=27% Similarity=0.360 Sum_probs=148.5
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc------c-cceEEeeccccccCCCCCHHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ------V-QRASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~------~-~~~~~yv~Q~~~~~~~~TV~e~l~f~~~ 73 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.... . ++.++|++|++.+++.+||.||+.++..
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~ 114 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPAL 114 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHH
Confidence 47999999999999999999999864 999999999875322 1 2569999999888898999999987643
Q ss_pred ccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchh
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKR 153 (1250)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqR 153 (1250)
.++... .+ .+.+++++++.+||.+..+..+.+ ||||||||
T Consensus 115 ~~~~~~-----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Ge~qr 154 (228)
T PRK10584 115 LRGESS-----------RQ------------------------SRNGAKALLEQLGLGKRLDHLPAQ-----LSGGEQQR 154 (228)
T ss_pred hcCCCH-----------HH------------------------HHHHHHHHHHHcCCHhHhhCChhh-----CCHHHHHH
Confidence 221100 00 011256788999998777776654 99999999
Q ss_pred hHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEee
Q 000860 154 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQ 228 (1250)
Q Consensus 154 v~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~ 228 (1250)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++.++|+|++.|+ ...+ ..+|++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-~~~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD-LQLA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHH-HhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999876557888887555 4455 56999999999998753
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=332.97 Aligned_cols=192 Identities=22% Similarity=0.285 Sum_probs=153.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHccCC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~ 77 (1250)
.++|+|+||||||||+++|+|+++|. +|+|.+||.++++. ..++.++||||++.+|+. |++|||.++. ..
T Consensus 369 ~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~---~~ 441 (592)
T PRK10790 369 FVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR---DI 441 (592)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC---CC
Confidence 37999999999999999999999975 99999999988643 467899999999888875 9999998852 11
Q ss_pred CcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHH
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA 157 (1250)
. . .++.+. .+.+ -.++.++. |++..||.+|+.+ ..||||||||++||
T Consensus 442 ~--d----~~i~~a---------------~~~~---------gl~~~i~~--lp~Gldt~i~e~g-~~LSGGqrQRialA 488 (592)
T PRK10790 442 S--E----EQVWQA---------------LETV---------QLAELARS--LPDGLYTPLGEQG-NNLSVGQKQLLALA 488 (592)
T ss_pred C--H----HHHHHH---------------HHHc---------CcHHHHHh--ccccccccccCCC-CCCCHHHHHHHHHH
Confidence 1 0 000000 0000 01122222 5677899999854 55999999999999
Q ss_pred HHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 158 ~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
|||+++|+|++||||||+||+.++.++.+.|+++.+ ++|+|++.|++ +..+.+|+|++|++|++++.|+++++.+
T Consensus 489 RaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 489 RVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999998753 58888876654 6677899999999999999999999864
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=294.02 Aligned_cols=190 Identities=21% Similarity=0.258 Sum_probs=153.8
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCc----------------ccccceEEeeccccccCCCCCH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDE----------------FQVQRASAYIGQTDNHIAELTV 64 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~----------------~~~~~~~~yv~Q~~~~~~~~TV 64 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv 109 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 109 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcH
Confidence 47999999999999999999999864 9999999987642 1235679999999999999999
Q ss_pred HHHHHHHHH-ccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCcccc-ccccCCCc
Q 000860 65 RETLDFAAR-CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCS-DTVVGSEM 142 (1250)
Q Consensus 65 ~e~l~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-~t~vg~~~ 142 (1250)
+||+.++.. ..... ..+ .+.++.++++.+||.+.. +..+
T Consensus 110 ~enl~~~~~~~~~~~-----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~---- 150 (257)
T PRK10619 110 LENVMEAPIQVLGLS-----------KQE------------------------ARERAVKYLAKVGIDERAQGKYP---- 150 (257)
T ss_pred HHHHHHHHHHhCCCC-----------HHH------------------------HHHHHHHHHHHcCCChhhhhCCc----
Confidence 999987532 11100 000 011256788999997653 5444
Q ss_pred cccCccccchhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecC
Q 000860 143 LRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSD 222 (1250)
Q Consensus 143 ~~~LSGGqkqRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~ 222 (1250)
++||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|+|++. |+..++..++|++++|++
T Consensus 151 -~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivs-H~~~~~~~~~d~i~~l~~ 227 (257)
T PRK10619 151 -VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVT-HEMGFARHVSSHVIFLHQ 227 (257)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEe-CCHHHHHHhcCEEEEEEC
Confidence 45999999999999999999999999999999999999999999999875 478888774 456677778999999999
Q ss_pred CeEEeecChhhHH
Q 000860 223 GYLVYQGPRAEVL 235 (1250)
Q Consensus 223 G~i~~~G~~~~~~ 235 (1250)
|++++.|+++++.
T Consensus 228 G~i~~~~~~~~~~ 240 (257)
T PRK10619 228 GKIEEEGAPEQLF 240 (257)
T ss_pred CEEEEeCCHHHhh
Confidence 9999999988764
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-31 Score=301.68 Aligned_cols=196 Identities=21% Similarity=0.242 Sum_probs=155.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCC-ceeeEEEECCeecCccc---c----cceEEeecccc--ccCCCCCHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNL-NKSGSITYNGWELDEFQ---V----QRASAYIGQTD--NHIAELTVRETLDF 70 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~-~~~G~v~~~g~~~~~~~---~----~~~~~yv~Q~~--~~~~~~TV~e~l~f 70 (1250)
+++|+||||||||||+++|+|++++.. +.+|+|.++|.++.... . ++.++||+|++ .+.+.+||.+++..
T Consensus 35 ~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~ 114 (326)
T PRK11022 35 VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIME 114 (326)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHH
Confidence 479999999999999999999987421 36999999999875331 1 23699999986 57888999999876
Q ss_pred HHHccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCcc---ccccccCCCccccCc
Q 000860 71 AARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDL---CSDTVVGSEMLRGVS 147 (1250)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~~t~vg~~~~~~LS 147 (1250)
......... ..+ .+.++.++|+.+||.+ ..+.. .++||
T Consensus 115 ~l~~~~~~~----------~~~------------------------~~~~~~~~L~~~gL~~~~~~l~~~-----p~~LS 155 (326)
T PRK11022 115 AIKVHQGGN----------KKT------------------------RRQRAIDLLNQVGIPDPASRLDVY-----PHQLS 155 (326)
T ss_pred HHHHhcCCC----------HHH------------------------HHHHHHHHHHHCCCCChHHHHhCC-----chhCC
Confidence 543221000 000 0123667899999964 23433 34599
Q ss_pred cccchhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEe
Q 000860 148 GGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVY 227 (1250)
Q Consensus 148 GGqkqRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~ 227 (1250)
|||||||+|||||+.+|++|++||||+|||+.++.++++.|+++.++.+.|+|++ +|+...+.+++|+|++|++|++++
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~i-THdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLI-THDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE-eCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987667888776 455677888999999999999999
Q ss_pred ecChhhHHH
Q 000860 228 QGPRAEVLE 236 (1250)
Q Consensus 228 ~G~~~~~~~ 236 (1250)
.|+.+++.+
T Consensus 235 ~g~~~~~~~ 243 (326)
T PRK11022 235 TGKAHDIFR 243 (326)
T ss_pred ECCHHHHhh
Confidence 999988753
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=300.66 Aligned_cols=191 Identities=20% Similarity=0.327 Sum_probs=151.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCc--------ccccceEEeeccccc-cCCCCCHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDE--------FQVQRASAYIGQTDN-HIAELTVRETLDFA 71 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~--------~~~~~~~~yv~Q~~~-~~~~~TV~e~l~f~ 71 (1250)
+++|+||||||||||+++|+|+++|. +|+|.++|.++.. ...++.++|++|++. .+...||+||+.|+
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~ 115 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG 115 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHH
Confidence 47999999999999999999999864 9999999988631 123567999999863 23346999999886
Q ss_pred HHccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCc-cccccccCCCccccCcccc
Q 000860 72 ARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLD-LCSDTVVGSEMLRGVSGGQ 150 (1250)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGq 150 (1250)
....+... .+ ....++.+++.++|+ +..++.++ .|||||
T Consensus 116 ~~~~~~~~-----------~~------------------------~~~~~~~ll~~~~L~~~~~~~~~~-----~LS~Gq 155 (289)
T PRK13645 116 PVNLGENK-----------QE------------------------AYKKVPELLKLVQLPEDYVKRSPF-----ELSGGQ 155 (289)
T ss_pred HHHcCCCH-----------HH------------------------HHHHHHHHHHHcCCChhHhcCChh-----hCCHHH
Confidence 43211100 00 001255678888994 55666554 499999
Q ss_pred chhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecC
Q 000860 151 KKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGP 230 (1250)
Q Consensus 151 kqRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~ 230 (1250)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++.++|+|++. |+.+++.+.+|++++|++|++++.|+
T Consensus 156 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiis-H~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 156 KRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVT-HNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe-cCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998765578888764 55667888999999999999999999
Q ss_pred hhhHH
Q 000860 231 RAEVL 235 (1250)
Q Consensus 231 ~~~~~ 235 (1250)
.+++.
T Consensus 235 ~~~~~ 239 (289)
T PRK13645 235 PFEIF 239 (289)
T ss_pred HHHHh
Confidence 88764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=339.51 Aligned_cols=189 Identities=24% Similarity=0.360 Sum_probs=150.8
Q ss_pred EEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccccCCCCCHHHHHHHHHHccCCC
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 2 ~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~~~ 78 (1250)
+||+||||||||||+|+|+|+++|. +|+|.+||.++++. ..++.++||+|++.+|+ .|++|||.++.. .
T Consensus 482 vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~---~- 553 (686)
T TIGR03797 482 VAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAP---L- 553 (686)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCC---C-
Confidence 7999999999999999999999975 99999999998654 46789999999977765 699999987521 1
Q ss_pred cchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHHHH
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~iA~ 158 (1250)
+. .++.+.. +.+ ..++.++ .+++..||.+|+++ .+||||||||++|||
T Consensus 554 -~~----e~i~~al---------------~~a---------~l~~~i~--~lp~G~dt~ige~G-~~LSGGQrQRialAR 601 (686)
T TIGR03797 554 -TL----DEAWEAA---------------RMA---------GLAEDIR--AMPMGMHTVISEGG-GTLSGGQRQRLLIAR 601 (686)
T ss_pred -CH----HHHHHHH---------------HHc---------CcHHHHH--hccccccccccCCC-CCCCHHHHHHHHHHH
Confidence 10 0110000 000 0111121 35678899999765 569999999999999
Q ss_pred HHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHHH
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 159 al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~~ 236 (1250)
||+++|++|+||||||+||+.++.++.+.|+++ ++|+|++.|++ +..+.+|+|++|++|+++++|+++++.+
T Consensus 602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 602 ALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999875 46888776553 6678899999999999999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=249.72 Aligned_cols=191 Identities=25% Similarity=0.349 Sum_probs=162.0
Q ss_pred eEEEEeEEEEEeCCcccccccccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHhCCCCC-CeeEEEEEECCcc
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYP 727 (1250)
Q Consensus 649 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~~i~G~sGsGKSTLl~~l~g~~~~-~~~~G~i~~~g~~ 727 (1250)
.+.++|++... ....+|-++|++|.+||++-||||||||||||+..+.|-..+ -..+|++.+|+..
T Consensus 2 ~l~l~nvsl~l-------------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~ 68 (213)
T COG4136 2 MLCLKNVSLRL-------------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQR 68 (213)
T ss_pred ceeeeeeeecC-------------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCee
Confidence 36778877433 234689999999999999999999999999999999996543 2478999999998
Q ss_pred CCc-ccccceEEEEcCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcCCHHH
Q 000860 728 KEQ-STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQ 806 (1250)
Q Consensus 728 ~~~-~~~~~~~~yv~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~v~~~~~~~lSgGe 806 (1250)
++. ..-+|++|..+||+.+||+++|.+|+.|+. |.....+.++..++..+++.||....+.-.. .|||||
T Consensus 69 l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~-----tlSGGQ 139 (213)
T COG4136 69 LDMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQDPA-----TLSGGQ 139 (213)
T ss_pred ccccchhhhheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcChh-----hcCcch
Confidence 764 345788999999999999999999998863 4445556777888999999999998877654 499999
Q ss_pred HHHHHHHHHHhhCCcEEEEeCCCCCCCHHHHHHHHHHHHH-HhhCCCEEEEEecCC
Q 000860 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN-TVDTGRTVVCTIHQP 861 (1250)
Q Consensus 807 rqr~~ia~~l~~~p~il~lDEPTsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~~ 861 (1250)
|-||++-|+|+..|+.++||||.|.||..-+.+.-+.+-. ....|..+|.+|||.
T Consensus 140 rARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 140 RARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred HHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 9999999999999999999999999999999998887544 455699999999985
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=299.03 Aligned_cols=193 Identities=26% Similarity=0.344 Sum_probs=155.4
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCcc---cccceEEeeccccc-cCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDN-HIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~---~~~~~~~yv~Q~~~-~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+||||||||||+++|+|+++|....+|+|.++|.++... ..++.++|++|++. .++..||+||+.|+....+
T Consensus 35 ~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~ 114 (282)
T PRK13640 35 WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRA 114 (282)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCC
Confidence 4799999999999999999999986411239999999987532 23567999999863 6778999999987643221
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
... .+ ..++++++++.+||.+..++.+. .||||||||++|
T Consensus 115 ~~~-----------~~------------------------~~~~~~~~l~~~~L~~~~~~~~~-----~LS~G~~qrv~l 154 (282)
T PRK13640 115 VPR-----------PE------------------------MIKIVRDVLADVGMLDYIDSEPA-----NLSGGQKQRVAI 154 (282)
T ss_pred CCH-----------HH------------------------HHHHHHHHHHHCCChhHhcCCcc-----cCCHHHHHHHHH
Confidence 100 00 01135678899999887777664 499999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|+|++.|+ ...+ ..+|++++|++|++++.|+++++.
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~-~~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD-IDEA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999876557888887655 4455 579999999999999999998764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=292.85 Aligned_cols=197 Identities=22% Similarity=0.325 Sum_probs=155.9
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCCCceeeEEEECCeecCccc----ccceEEeeccccccCCCCCHHHHHHHHHHccC
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ----VQRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~~~~~G~v~~~g~~~~~~~----~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~~~~ 76 (1250)
+++|+|||||||||||++|+|+++|. +|+|.++|.++.... .++.++|++|++.+++.+||+||+.++.....
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~ 106 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDK 106 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccc
Confidence 47999999999999999999999865 999999998875322 23469999999999999999999988643110
Q ss_pred CCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCccccccccCCCccccCccccchhhHH
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGqkqRv~i 156 (1250)
............ ..+.+++++++.+|+++..++.+++ |||||||||+|
T Consensus 107 ---~~~~~~~~~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~Ge~qrv~l 154 (242)
T TIGR03411 107 ---SVFASLFFRLSA------------------------EEKDRIEEVLETIGLADEADRLAGL-----LSHGQKQWLEI 154 (242)
T ss_pred ---ccccccccccHH------------------------HHHHHHHHHHHHcCCchhhcCChhh-----CCHHHHHHHHH
Confidence 000000000000 0012367789999998877777654 99999999999
Q ss_pred HHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeecChhhHH
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 157 A~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G~~~~~~ 235 (1250)
||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|+|++. |+.+++.+++|++++|++|++++.|+++++.
T Consensus 155 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~s-H~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 155 GMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVE-HDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEE-CCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 9999999999999999999999999999999999864 57887775 4567788899999999999999999987753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-31 Score=293.47 Aligned_cols=194 Identities=24% Similarity=0.355 Sum_probs=152.7
Q ss_pred CEEEeCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCeecCc-----ccccceEEeeccccccCCCCCHHHHHHHHHH
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGN--LNKSGSITYNGWELDE-----FQVQRASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ~~~ivGp~GsGKSTLl~~l~G~~~~~--~~~~G~v~~~g~~~~~-----~~~~~~~~yv~Q~~~~~~~~TV~e~l~f~~~ 73 (1250)
+++|+||||||||||+++|+|+++|+ .+.+|+|+++|.++.. ...++.++|++|++.+++.+||.||+.++..
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~ 111 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVK 111 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHH
Confidence 47999999999999999999999762 1359999999998741 1245679999999989999999999988653
Q ss_pred ccCCCcchhhHhHhhhHHHHhhccCCCchhHHHHhhhccCCCcccccHHHHHHHhCCcc----ccccccCCCccccCccc
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDL----CSDTVVGSEMLRGVSGG 149 (1250)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~~t~vg~~~~~~LSGG 149 (1250)
.++..... .+ . ...++++++.+||.+ ..++.+ ..||||
T Consensus 112 ~~~~~~~~----~~---------------~--------------~~~~~~~l~~~~l~~~~~~~~~~~~-----~~LS~G 153 (253)
T PRK14267 112 LNGLVKSK----KE---------------L--------------DERVEWALKKAALWDEVKDRLNDYP-----SNLSGG 153 (253)
T ss_pred hcCccCCH----HH---------------H--------------HHHHHHHHHHcCCccchhhhhccCh-----hhCCHH
Confidence 22110000 00 0 012456777778742 234443 459999
Q ss_pred cchhhHHHHHHhcCCcEeeeeCCCccccHHHHHHHHHHHHHHHHhCCCEEEEEecCCChhHHhhccceEEecCCeEEeec
Q 000860 150 QKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQG 229 (1250)
Q Consensus 150 qkqRv~iA~al~~~p~illLDEPtsgLD~~~~~~i~~~L~~l~~~~~~tvi~~~~~~~~~~~~~~D~i~~l~~G~i~~~G 229 (1250)
||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++. |+..++.+.+|++++|++|++++.|
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~s-H~~~~~~~~~d~i~~l~~G~i~~~~ 230 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVT-HSPAQAARVSDYVAFLYLGKLIEVG 230 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEE-CCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999854 57877765 5566778899999999999999999
Q ss_pred ChhhHH
Q 000860 230 PRAEVL 235 (1250)
Q Consensus 230 ~~~~~~ 235 (1250)
+++++.
T Consensus 231 ~~~~~~ 236 (253)
T PRK14267 231 PTRKVF 236 (253)
T ss_pred CHHHHH
Confidence 988764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1250 | ||||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-10 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-10 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 5e-10 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-10 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 7e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 9e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-09 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-09 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 5e-09 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-08 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-08 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-08 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-08 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 5e-08 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 6e-08 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-08 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 7e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-07 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 1e-07 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-07 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-07 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-07 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 3e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 3e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 4e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 4e-07 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-06 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-06 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 4e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 5e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 6e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 6e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 7e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-05 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 4e-05 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 5e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 5e-05 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 7e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 8e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 9e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-04 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 1e-04 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-04 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-04 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-04 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-04 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-04 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-04 |
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 16/171 (9%)
Query: 693 LVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KEQSTFARISGYVEQEDVHSP 748
L+G +GAGKTT + +++ + + G + + G +E ++ Y+ +E
Sbjct: 46 LIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYR 101
Query: 749 QVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808
+ E L F A S + E VE + L V + S +
Sbjct: 102 NMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVST-----YSKGMVR 153
Query: 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 859
+L IA L+ NP + +DEPTSGLD A V + ++ G T++ + H
Sbjct: 154 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 32/194 (16%), Positives = 66/194 (34%), Gaps = 49/194 (25%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWEL--DEFQVQRASAYIGQTDNHIAE 61
L+GP G+GK+T L ++ + + SG +T G + + +V++ +Y+ +
Sbjct: 46 LIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 102
Query: 62 LTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVST 121
+ E L F A + E E +
Sbjct: 103 MQGIEYLRFVAG-----------FYASSSSEIEEMV------------------------ 127
Query: 122 DYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTT 181
+ + GL V + S G +++ ++ + +DE ++GLD
Sbjct: 128 ERATEIAGLGEKIKDRVST-----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 182
Query: 182 FQIVKCVRNFVHQM 195
++ R + Q
Sbjct: 183 REV----RKILKQA 192
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 45/219 (20%), Positives = 83/219 (37%), Gaps = 26/219 (11%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG-RKTGGYIE-GDIKISGYPKEQSTF 733
L +SG G + LVG +GAGK+TL+ +AG G I+ + + +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--L 71
Query: 734 ARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHAL 793
A Y+ Q+ + L + K R E + +V + LD
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLH---QHDK-----TRTELLNDVAGALALDDKLGRS 123
Query: 794 VGSPGSFGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAAIVMRAVRN 846
LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 124 TNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 847 TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
G +V + H + + A L+K GG+++ G
Sbjct: 179 LSQQGLAIVMSSHDLNHTLRHA-HRAWLLK-GGKMLASG 215
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 7e-07
Identities = 48/252 (19%), Positives = 76/252 (30%), Gaps = 75/252 (29%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
+ L+GP G+GKSTLL +AG G GSI + +
Sbjct: 28 ILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFA-------------------GQPLE 64
Query: 61 ELTVRETLDFAAR----CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKK 116
+ + A Q FA + L + R ++ A ++ K
Sbjct: 65 AWSATK---LALHRAYLSQQQTPPFATPVWHYLTLHQHDKTR-TELLNDVAGALALDDKL 120
Query: 117 H-SVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV--------TTGEMIVGPRKTL 167
S + +SGG+ +RV T + + L
Sbjct: 121 GRSTNQ------------------------LSGGEWQRVRLAAVVLQITPQANPAGQ-LL 155
Query: 168 FMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMAL----LQPPPETFELFDDLVLLSDG 223
+DE LD + + K + Q +M+ T LL G
Sbjct: 156 LLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLNH-----TLRHAHRAWLLKGG 209
Query: 224 YLVYQGPRAEVL 235
++ G R EVL
Sbjct: 210 KMLASGRREEVL 221
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 27/218 (12%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKE 729
+ + L ++ + G + A++G +G GK+TL+D+L G R G IE
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE----------- 63
Query: 730 QSTFARISGYVEQEDVHSPQVTIEESLWF--SANLRLPKEISKDQRHEFVEEVMSLVELD 787
+ G+V Q ++ + + S ++ + + + + + L
Sbjct: 64 ---VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY-QVAMQALDYLNLT 119
Query: 788 SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN- 846
L S LS QR+ + IA + + +I +DEPTS LD IV+ + +
Sbjct: 120 HLAKREFTS-----LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDL 174
Query: 847 TVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
TVV T HQP+ + ++ LL+ +G
Sbjct: 175 AQSQNMTVVFTTHQPNQ-VVAIANKTLLLN-KQNFKFG 210
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 41/239 (17%), Positives = 82/239 (34%), Gaps = 59/239 (24%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
+ +LG G GKSTLL L G G I +V ++ ++ Q +
Sbjct: 33 ILAVLGQNGCGKSTLLDLLLGIHR---PIQGKI----------EVYQSIGFVPQFFSSPF 79
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
+V + + G + +I + + + M+A
Sbjct: 80 AYSVLDIV-----LMGR----STHINTFAKPKSH-------DYQVAMQA----------- 112
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI----VGPRKTLFMDEISTGL 176
L+ L L + S +SGGQ++ + +I K + +DE ++ L
Sbjct: 113 ----LDYLNLTHLAKREFTS-----LSGGQRQLI----LIARAIASECKLILLDEPTSAL 159
Query: 177 DSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235
D + ++ + + + T + Q P + + + +LL+ G +L
Sbjct: 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQ-PNQVVAIANKTLLLNKQ-NFKFGETRNIL 216
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 5e-25
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 31/227 (13%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKEQSTF 733
+L +S + G L G +GAGKTTL+++L T G + + G + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 734 ------ARISGYVEQEDVHSPQVTIEESLW------FSANLRLPKEISKDQRHEFVEEVM 781
I G+V + E + ++ + ++I + R +++
Sbjct: 91 SAETVRQHI-GFVSHS--LLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR-NEAHQLL 146
Query: 782 SLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 841
LV + + +G LST +++R+ IA L+ P ++ +DEP +GLD A ++
Sbjct: 147 KLVGMSAKAQQYIGY-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLL 201
Query: 842 RAVR--NTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
+ + ++ H EI F ++LL+K G+ I G
Sbjct: 202 SILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGA 246
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 47/248 (18%), Positives = 85/248 (34%), Gaps = 64/248 (25%)
Query: 4 LLGPPGSGKSTLLLALAG---------KLDGNLNKSGSITYNGWELDEFQVQRAS-AYIG 53
L G G+GK+TLL L L G G + Y+ + R ++
Sbjct: 52 LYGLNGAGKTTLLNILNAYEPATSGTVNLFGK--MPGKVGYSAETV------RQHIGFVS 103
Query: 54 Q--TDNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASS 111
+ V + + GA S Y +D+ +
Sbjct: 104 HSLLEKFQEGERVIDVV-----ISGAFKSIGVY-QDIDDEIRNE---------------- 141
Query: 112 VGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI----VGPRKTL 167
+L ++G+ + +G +S G+K+RV MI +G + L
Sbjct: 142 ---------AHQLLKLVGMSAKAQQYIGY-----LSTGEKQRV----MIARALMGQPQVL 183
Query: 168 FMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVY 227
+DE + GLD ++ + + A++ + E F ++LL DG +
Sbjct: 184 ILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ 243
Query: 228 QGPRAEVL 235
QG ++L
Sbjct: 244 QGAVEDIL 251
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 2e-22
Identities = 36/210 (17%), Positives = 87/210 (41%), Gaps = 29/210 (13%)
Query: 678 LSNVSGIFS--PGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTF 733
L ++ + G + G +G GKTTL+ ++ + +G+I +G P +
Sbjct: 25 LERIT--MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVPITK-VK 77
Query: 734 ARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHAL 793
+I ++ +E + ++++E+ L A+L + ++ + + + VE+
Sbjct: 78 GKI-FFLPEEIIVPRKISVEDYLKAVASL---YGVKVNKNE--IMDALESVEVLD-LKKK 130
Query: 794 VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV-DTGR 852
+G LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 131 LGE-----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGI 185
Query: 853 TVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882
++ + D + + I
Sbjct: 186 VIISSRE-----ELSYCDVNENLHKYSTKI 210
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 29/199 (14%), Positives = 64/199 (32%), Gaps = 48/199 (24%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELT 63
GP G GK+TLL ++ L G I YNG + + V+ ++ + +++
Sbjct: 40 FHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITK--VKGKIFFLPEEIIVPRKIS 94
Query: 64 VRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDY 123
V + L A G +K + I
Sbjct: 95 VEDYLKAVASLYG--------VK-----VNKNEI------------------------MD 117
Query: 124 VLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQ 183
L + + + +S G +RV ++ + +D+ +D + +
Sbjct: 118 ALESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHK 171
Query: 184 IVKCVRNFVHQMDATALMA 202
++K + + + + +
Sbjct: 172 VLKSILEILKEKGIVIISS 190
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 3e-22
Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 26/217 (11%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 735
L NVS + + G + G++G+GK+TL+ ++AG T GD+ G K+ R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVLYDGERKKGYEIRR 78
Query: 736 ISGYVEQ--EDVHSPQV---TIEESLWFSA-NLRLPKEISKDQRHEFVEEVMSLVELDSL 789
G Q ED Q + + + F+ N ++ V++ M V LD
Sbjct: 79 NIGIAFQYPED----QFFAERVFDEVAFAVKNFYPDRDP-----VPLVKKAMEFVGLDFD 129
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 849
P F LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 130 SFKDR-VP--FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186
Query: 850 TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
G+TV+ H + D ++++++ G+ ++ G
Sbjct: 187 LGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 7e-09
Identities = 50/259 (19%), Positives = 82/259 (31%), Gaps = 85/259 (32%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQT-DNHIAEL 62
+ G GSGKSTLL +AG + SG + Y+G ++++R Q ++
Sbjct: 38 VAGNTGSGKSTLLQIVAGLI---EPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE 94
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTD 122
V + + FA + R
Sbjct: 95 RVFDEVAFAVKNFY-----------PDRDPVPL-------------------------VK 118
Query: 123 YVLNVLGLDLCSDTVVGSEMLRGV-----SGGQKKRVTTGEMIVG-----PRKTLFMDEI 172
+ +GLD + + SGG+K+RV I P L +DE
Sbjct: 119 KAMEFVGLDF--------DSFKDRVPFFLSGGEKRRVA----IASVIVHEP-DILILDEP 165
Query: 173 STGLDSSTTFQIVKCVRNF----------VHQMDATALMALLQPPPETFELFDDLVLLSD 222
GLD +++ V + H ++ D +V+L
Sbjct: 166 LVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHV------------DRVVVLEK 213
Query: 223 GYLVYQGPRAEVLEFFESL 241
G V+ G R E LE ++
Sbjct: 214 GKKVFDGTRMEFLEKYDPR 232
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 1e-21
Identities = 47/234 (20%), Positives = 84/234 (35%), Gaps = 43/234 (18%)
Query: 635 DGKKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKKLQ------LLSNVSGIFSPG 688
DG + F + F D S+ L+ +L+ G FS
Sbjct: 319 DGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDS 378
Query: 689 VLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVH 746
+ ++G +G GKTTL+ +LAG + G + +S P+ +I+ V
Sbjct: 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQ------KIA-PKFPGTVR 431
Query: 747 SPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR----HALVGSPGSFGL 802
F +R + Q F +V+ + +D + L S G
Sbjct: 432 Q---------LFFKKIR--GQFLNPQ---FQTDVVKPLRIDDIIDQEVQHL-----SGG- 471
Query: 803 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV-DTGRTVV 855
+ +R+ I + L I +DEP++ LD+ I + +R + +T
Sbjct: 472 ---ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 9e-18
Identities = 43/212 (20%), Positives = 86/212 (40%), Gaps = 25/212 (11%)
Query: 687 PGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKE--QSTFARISGYVEQ 742
PG + LVG++G GK+T + +LAG + G + + K S + +
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 743 EDVHS----------PQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHA 792
+D+ + P+ L+L E + E V+ + +++L+++
Sbjct: 162 DDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----KSPEDVKRYIKILQLENVLKR 217
Query: 793 LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGR 852
LS + +R I + V + DEP+S LD + + +R+ + +
Sbjct: 218 ---DI--EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 853 TVVCTIHQPSIEIFEAFDELLLMKRGGRVIYG 884
V+C H S+ + D + ++ G +YG
Sbjct: 273 YVICVEHDLSV-LDYLSDFVCIIY-GVPSVYG 302
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 39/201 (19%), Positives = 59/201 (29%), Gaps = 44/201 (21%)
Query: 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG-WE--LDEFQVQRASAYIGQTDNH 58
L+G G GKST L LAGK NL G W+ + F+ Y
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQEIIKYFRGSELQNYFT----- 157
Query: 59 IAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
+ E A D+ IK + E + +
Sbjct: 158 ----KMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDV----------- 202
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRG-----VSGGQKKRVTTGEMIVGPRKTLFMDEIS 173
+ +L L E + +SGG+ +R G V DE S
Sbjct: 203 ---KRYIKILQL----------ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPS 249
Query: 174 TGLDSSTTFQIVKCVRNFVHQ 194
+ LD + +R+ +
Sbjct: 250 SYLDVKQRLNAAQIIRSLLAP 270
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 39/200 (19%), Positives = 63/200 (31%), Gaps = 61/200 (30%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELT 63
++G G+GK+TL+ LAG L + G +L+ + A T
Sbjct: 383 MMGENGTGKTTLIKLLAGALKPD---EGQDIP---KLNVSMKPQKIAPKFP-------GT 429
Query: 64 VRETLDFAARCQGANDSFAAYIKDLTRLE--KERHIRPNPEIDAFMKASSVGGKKHSVST 121
VR+ R Q N F + R++ ++ ++
Sbjct: 430 VRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQ----------------------- 466
Query: 122 DYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTT 181
L SGG+ +RV + P +DE S LDS
Sbjct: 467 ---------HL--------------SGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQR 503
Query: 182 FQIVKCVRNFVHQMDATALM 201
K +R F+ TA +
Sbjct: 504 IICSKVIRRFILHNKKTAFI 523
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 3e-21
Identities = 53/227 (23%), Positives = 89/227 (39%), Gaps = 32/227 (14%)
Query: 635 DGKKKGMIMPFHPLTMTFHNISYYVDTPQAMRSKGIHEKK---LQLLSNVSGIFSPGVLT 691
G K + F P + F +S VD + + K L G G +
Sbjct: 326 QGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVI 385
Query: 692 ALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQ 749
+VG +G GKTT + +LAG T G +E D+ ++ Y Q +
Sbjct: 386 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--------------YKPQYIKAEYE 431
Query: 750 VTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKR 809
T+ E S SK + + E++ + + L V LS + +R
Sbjct: 432 GTVYE--LLSKIDS-----SKLNSNFYKTELLKPLGIIDLYDRNVED-----LSGGELQR 479
Query: 810 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVV 855
+ IA L+ + I +DEP++ LD V RA+R+ ++ +T +
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-15
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGR----KTGGYIEGDIKISGYP--KEQ 730
+ I G++ +VG +G GKTT + +LAG+ D I + + Q
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ 165
Query: 731 STFARIS-GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL 789
+ F R+ G + V PQ +R + + K EEV+ +EL+++
Sbjct: 166 NYFERLKNGEIRP--VVKPQYVDLLPKAVKGKVR--ELLKKVDEVGKFEEVVKELELENV 221
Query: 790 RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 849
+ LS + +R+ IA L+ F DEP+S LD R V R +R +
Sbjct: 222 LDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN 276
Query: 850 TGRTVV 855
G+ V+
Sbjct: 277 EGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 37/197 (18%), Positives = 64/197 (32%), Gaps = 57/197 (28%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELT 63
++GP G GK+T + LAG + G + ++ V AY Q E T
Sbjct: 387 IVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL------TV----AYKPQYIKAEYEGT 433
Query: 64 VRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDY 123
V E + + + +
Sbjct: 434 VYE-----------------LLSKIDSSKLNSNFY----------------------KTE 454
Query: 124 VLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQ 183
+L LG+ D V +SGG+ +RV ++ +DE S LD
Sbjct: 455 LLKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 509
Query: 184 IVKCVRNFVHQMDATAL 200
+ + +R+ + + + TAL
Sbjct: 510 VSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 4e-07
Identities = 35/203 (17%), Positives = 68/203 (33%), Gaps = 42/203 (20%)
Query: 3 LLLGPPGSGKSTLLLALAGKLDGNL---NKSGSITYNGWELDEFQVQRASAYIGQTDNHI 59
++GP G+GK+T + LAG+L NL N S + +E Q
Sbjct: 121 GIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ--------------N 166
Query: 60 AELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSV 119
++ + K +++ P+ +
Sbjct: 167 YFERLKN-----------GEIRPVV--------KPQYVDLLPKAVKGKVRELLKKVDEVG 207
Query: 120 STDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSS 179
+ V+ L L+ D + +SGG+ +RV ++ F DE S+ LD
Sbjct: 208 KFEEVVKELELENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 262
Query: 180 TTFQIVKCVRNFVHQMDATALMA 202
++ + +R ++ L+
Sbjct: 263 QRLKVARVIRRLANE-GKAVLVV 284
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 6e-21
Identities = 39/202 (19%), Positives = 78/202 (38%), Gaps = 23/202 (11%)
Query: 687 PGVLTALVGSSGAGKTTLMDVLAG-RKTGGYIEGDIKISGYPKEQSTFARISGYVEQE-D 744
G ++G +G+GKTTL+ ++G G+I I+G E Y +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFING--MEVRKIRNYIRYSTNLPE 82
Query: 745 VHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804
+ VT+ + + L +E+ R + E++ ++L L LS
Sbjct: 83 AYEIGVTVND------IVYLYEELKGLDR-DLFLEMLKALKLGE--EILRRKLYK--LSA 131
Query: 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIE 864
Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ + H+
Sbjct: 132 GQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHELD-M 187
Query: 865 IFEAFDELLLMKRGGRVIYGGK 886
+ + G R+
Sbjct: 188 LNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 42/242 (17%), Positives = 77/242 (31%), Gaps = 70/242 (28%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA-EL 62
+LGP GSGK+TLL A++G L SG+I NG E+ + ++ Y +
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP----YSGNIFINGMEVRK--IRNYIRYSTNLPEAYEIGV 88
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTD 122
TV + + +G + + +L +E R
Sbjct: 89 TVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRR-KL--------------------- 126
Query: 123 YVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTF 182
++ S GQ V T + + + +DE +D++
Sbjct: 127 -----------------YKL----SAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRH 165
Query: 183 QIVKCVRN------FV-HQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQ-GPRAEV 234
I + ++ V H++D + G + +E+
Sbjct: 166 VISRYIKEYGKEGILVTHELD------------MLNLYKEYKAYFLVGNRLQGPISVSEL 213
Query: 235 LE 236
LE
Sbjct: 214 LE 215
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 1e-20
Identities = 59/261 (22%), Positives = 109/261 (41%), Gaps = 49/261 (18%)
Query: 641 MIMPFHPLTMTFHNISY-YVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGA 699
M + + L ++Y Y D A L ++ G +TA++G +G
Sbjct: 1 MSLEDYILK--VEELNYNYSDGTHA-------------LKGINMNIKRGEVTAILGGNGV 45
Query: 700 GKTTLMDVLAG--RKTGGYIEGDIKISGYP--KEQSTFARIS---GYVEQ--EDVHSPQV 750
GK+TL G + + G I P + ++ G V Q ++ Q+
Sbjct: 46 GKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDN----QL 97
Query: 751 ---TIEESLWFS-ANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQ 806
++ + + F N++LP++ + + V+ + ++ L+ LS Q
Sbjct: 98 FSASVYQDVSFGAVNMKLPED----EIRKRVDNALKRTGIEHLKDK---PT--HCLSFGQ 148
Query: 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN-TVDTGRTVVCTIHQPSIEI 865
+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G T++ H +
Sbjct: 149 KKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IV 207
Query: 866 FEAFDELLLMKRGGRVIYGGK 886
D + +MK GRVI G
Sbjct: 208 PLYCDNVFVMKE-GRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 20/122 (16%)
Query: 147 SGGQKKRVTTGEMIVG-----PRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALM 201
S GQKKRV I G P K L +DE + GLD +I+K + ++ T ++
Sbjct: 145 SFGQKKRVA----IAGVLVMEP-KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII 199
Query: 202 A---LLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL---EFFESLGFRLPPRKGVADFL 255
A + D++ ++ +G ++ QG EV E + RLP + + L
Sbjct: 200 ATHDI----DIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEIL 255
Query: 256 QE 257
+E
Sbjct: 256 KE 257
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 1e-20
Identities = 50/230 (21%), Positives = 87/230 (37%), Gaps = 31/230 (13%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 735
L +G G + ++G +G GKTT +L G G + + +I Y K Q
Sbjct: 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQ----- 337
Query: 736 ISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVG 795
+ + T+++ L + + F EEV + L L + V
Sbjct: 338 ---RIFP----NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN 384
Query: 796 SPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVV 855
LS + ++L IA L + +D+P+S LD IV +A++ + V
Sbjct: 385 D-----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439
Query: 856 CTI-HQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHS--QIMIDYFQGLD 902
I H SI D +++ K G G + M ++ + L+
Sbjct: 440 FIIDHDLSI-HDYIADRIIVFK-GEPEKAGLATSPVTLKTGMNEFLRELE 487
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 7e-16
Identities = 43/210 (20%), Positives = 85/210 (40%), Gaps = 19/210 (9%)
Query: 684 IFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTF--ARISGYVE 741
+ ++G +G GKTT++ +LAG + + + K+ G + F I Y +
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV-GKDEVLKRFRGKEIYNYFK 79
Query: 742 ------QEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVG 795
+ VH Q S + + + ++K +EV L+ + +L +
Sbjct: 80 ELYSNELKIVHKIQYVEYASKFLKGTVN--EILTKIDERGKKDEVKELLNMTNLWNKDA- 136
Query: 796 SPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVV 855
LS +RL +A L+ + D+P+S LD R + +A+R + + V+
Sbjct: 137 ----NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVI 191
Query: 856 CTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
H + + D + ++ G +YG
Sbjct: 192 VVDHDLIV-LDYLTDLIHIIY-GESSVYGR 219
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 32/200 (16%), Positives = 61/200 (30%), Gaps = 61/200 (30%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELT 63
+LGP G GK+T L G++ + GS+T
Sbjct: 299 ILGPNGIGKTTFARILVGEITAD---EGSVTPEK-------------------------- 329
Query: 64 VRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDY 123
+ L+ K + I PN + + S S+ +
Sbjct: 330 ----------------------QILSY--KPQRIFPNYDGTVQQYLENASKDALSTSSWF 365
Query: 124 ---VLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
V L L ++ V +SGG+ +++ + +D+ S+ LD
Sbjct: 366 FEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420
Query: 181 TFQIVKCVRNFVHQMDATAL 200
+ + K ++ + A
Sbjct: 421 RYIVAKAIKRVTRERKAVTF 440
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 30/198 (15%), Positives = 59/198 (29%), Gaps = 43/198 (21%)
Query: 3 LLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAEL 62
+LG G GK+T+L LAG++ N S L F+ + Y +
Sbjct: 29 GVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE-------- 80
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTD 122
+ +L + K +++ + + D
Sbjct: 81 -LYS-------------------NELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKD 120
Query: 123 YVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI-----VGPRKTLFMDEISTGLD 177
V +L + + +SGG +R+ ++ D+ S+ LD
Sbjct: 121 EVKELLNMTNLWNKDANI-----LSGGGLQRL----LVAASLLREA-DVYIFDQPSSYLD 170
Query: 178 SSTTFQIVKCVRNFVHQM 195
+ K +R +
Sbjct: 171 VRERMNMAKAIRELLKNK 188
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 2e-20
Identities = 44/181 (24%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 735
L G G + +VG +G GKTT + +LAG T G IE D+ ++ Y +
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA-YKPQYIKA-- 358
Query: 736 ISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVG 795
+ T+ E S + SK + + E++ + + L V
Sbjct: 359 -----------DYEGTVYE--LLSK-----IDASKLNSNFYKTELLKPLGIIDLYDREVN 400
Query: 796 SPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTV 854
LS + +R+ IA L+ + I +DEP++ LD V RA+R+ ++ +T
Sbjct: 401 E-----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 855 V 855
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 1e-13
Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 20/194 (10%)
Query: 669 GIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGR----KTGGYIEGDIKIS 724
G++ L L V G++ +VG +G GK+T + +LAG+ G D I
Sbjct: 32 GVNAFVLYRLPVVK----EGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIR 87
Query: 725 GYPKE--QSTFARISG-YVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVM 781
+ Q+ F ++ + V PQ + + + K +EEV+
Sbjct: 88 AFRGNELQNYFEKLKNGEIRP--VVKPQYVDLIPKAVKGKVI--ELLKKADETGKLEEVV 143
Query: 782 SLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 841
+EL+++ + LS + +R+ IA L+ N + F DEP+S LD R
Sbjct: 144 KALELENVLEREI-----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA 198
Query: 842 RAVRNTVDTGRTVV 855
RA+R + G++V+
Sbjct: 199 RAIRRLSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-05
Identities = 33/199 (16%), Positives = 64/199 (32%), Gaps = 61/199 (30%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELT 63
++GP G GK+T + LAG + G I ++ ++ Q A E T
Sbjct: 317 IVGPNGIGKTTFVKMLAGVEE---PTEGKIEWDLTVA--YKPQYIKA--------DYEGT 363
Query: 64 VRETLDFAARCQGANDSFAAYIKDLTRLE--KERHIRPNPEIDAFMKASSVGGKKHSVST 121
V E L + ++ + + + +R + + +S
Sbjct: 364 VYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREV-------------------NELS- 403
Query: 122 DYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTT 181
GG+ +RV ++ +DE S LD
Sbjct: 404 --------------------------GGELQRVAIAATLLRDADIYLLDEPSAYLDVEQR 437
Query: 182 FQIVKCVRNFVHQMDATAL 200
+ + +R+ + + + TAL
Sbjct: 438 LAVSRAIRHLMEKNEKTAL 456
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 1e-17
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 27/203 (13%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG-YIEGDIKISGYPKE 729
+ ++L +S G +++G+SG+GK+TL+ +L T G ++ ++
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEK 74
Query: 730 QSTFAR---ISGYVEQEDVHS--PQVTIEESLWFSANLRLP---KEISKDQRHEFVEEVM 781
+ + R + G+V Q H P++T E N+ +P K + E E ++
Sbjct: 75 ELSLLRNRKL-GFVFQF--HYLIPELTALE------NVIVPMLKMGKPKKEAKERGEYLL 125
Query: 782 SLVEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 840
S + L D L P LS +++R+ IA L P ++F DEPT LD+ V
Sbjct: 126 SELGLGDKLSRK----PYE--LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV 179
Query: 841 MRAVRNTVDTGRTVVCTIHQPSI 863
M + G ++V H+ +
Sbjct: 180 MDIFLKINEGGTSIVMVTHEREL 202
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 7e-16
Identities = 90/363 (24%), Positives = 144/363 (39%), Gaps = 70/363 (19%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYP-KE-QS 731
Q+L ++ G ALVG+SG GK+T + ++ Y ++G + I G +
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM----QRLYDPLDGMVSIDGQDIRTINV 459
Query: 732 TFAR--ISGYVEQEDVHSP---QVTIEESLWFSANLRLPKEISKDQR----------HEF 776
+ R I G V QE P TI E N+R +E ++F
Sbjct: 460 RYLREII-GVVSQE----PVLFATTIAE------NIRYGREDVTMDEIEKAVKEANAYDF 508
Query: 777 VEEVMSLVE-LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 835
+ M L D+L VG G+ LS Q++R+ IA LV NP I+ +DE TS LD
Sbjct: 509 I---MKLPHQFDTL----VGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTE 560
Query: 836 AAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMI 895
+ A+V A+ GRT + H+ S + A D + GG ++ G H ++M
Sbjct: 561 SEAVVQAALDK-AREGRTTIVIAHRLST-VRNA-DVIAGFD-GGVIVEQGN---HDELMR 613
Query: 896 D---YFQGLDGIPLIPSGYNPATWVLEVTTTAVEEKLGVDFANVYKNSEQYREV--ESSI 950
+ YF+ L+ + A +E+ A + K +D ++ + S+
Sbjct: 614 EKGIYFK------LVMT--QTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTR 665
Query: 951 KSLSVPPDDSEPLKFASTYSQNWLSQFFICLWKQNLVYWRSPQYNAVRLAFTTVAALILG 1010
KS+ P D L ++ F + K N W A+I G
Sbjct: 666 KSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPY-------FVVGIFCAIING 718
Query: 1011 SVF 1013
+
Sbjct: 719 GLQ 721
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 5e-12
Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 56/211 (26%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYP- 727
+L +S G ALVGSSG GK+T++ D +AG + + G
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEI 1097
Query: 728 KEQSTF---ARISGYVEQEDVHSP---QVTIEESLWFSANLRL---PKEISKDQ------ 772
K+ + A++ G V QE P +I E N+ + +S ++
Sbjct: 1098 KQLNVQWLRAQL-GIVSQE----PILFDCSIAE------NIAYGDNSRVVSYEEIVRAAK 1146
Query: 773 ---RHEFVEEVMSLVE-LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEP 828
H+F+ SL + ++ VG G+ LS Q++R+ IA LV P I+ +DE
Sbjct: 1147 EANIHQFI---DSLPDKYNTR----VGDKGT-QLSGGQKQRIAIARALVRQPHILLLDEA 1198
Query: 829 TSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 859
TS LD + +V A+ + GRT + H
Sbjct: 1199 TSALDTESEKVVQEAL-DKAREGRTCIVIAH 1228
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 76.7 bits (190), Expect = 2e-15
Identities = 70/269 (26%), Positives = 115/269 (42%), Gaps = 71/269 (26%)
Query: 651 TFHNIS--YYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLM--- 705
TF NI Y D+P +L N++ G + +VG SG+GK+TL
Sbjct: 9 TFRNIRFRYKPDSPV-------------ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
Query: 706 ----DVLAGRKTGGYIEGDIKISGYPKEQSTFA---RISGYVEQEDV--HSPQVTIEESL 756
G+ + I G+ + R G V Q++V + +I +
Sbjct: 56 QRFYIPENGQ---------VLIDGHDLALADPNWLRRQVGVVLQDNVLLNR---SIID-- 101
Query: 757 WFSANLRLPKEISKDQR----------HEFVEEVMSLVE-LDSLRHALVGSPGSFGLSTE 805
N+ L ++ H+F+ L E +++ VG G+ GLS
Sbjct: 102 ----NISLANPGMSVEKVIYAAKLAGAHDFI---SELREGYNTI----VGEQGA-GLSGG 149
Query: 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEI 865
QR+R+ IA LV NP I+ DE TS LD + ++MR + GRTV+ H+ S +
Sbjct: 150 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V 207
Query: 866 FEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
A D +++M++G V + G H +++
Sbjct: 208 KNA-DRIIVMEKGKIV----EQGKHKELL 231
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 4e-15
Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 34/210 (16%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG-YIEGDIKISGYPK 728
E+ + L NV+ G +++G SG+GK+T+++++ + T G +IK +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD 74
Query: 729 EQSTFAR---ISGYVEQEDVHS----PQVTIEESLWFSANLRLP------KEISKDQRHE 775
++ T R I G+V Q P +T E N+ LP +S ++R +
Sbjct: 75 DELTKIRRDKI-GFVFQ----QFNLIPLLTALE------NVELPLIFKYRGAMSGEERRK 123
Query: 776 FVEEVMSLVEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 834
E + + EL + + P LS Q++R+ IA L NP II D+PT LD+
Sbjct: 124 RALECLKMAELEERFANHK---PNQ--LSGGQQQRVAIARALANNPPIILADQPTWALDS 178
Query: 835 RAAAIVMRAVRN-TVDTGRTVVCTIHQPSI 863
+ +M+ ++ + G+TVV H ++
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 8e-15
Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 19/194 (9%)
Query: 675 LQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQS 731
+ L VS + G +T ++G +G+GK+TL++V+ G + G + + I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 732 -------TFARISGYVEQ---EDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVM 781
TF E E++ ++ ES S + ++ E +++
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-EKAFKIL 138
Query: 782 SLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 841
++L L G LS Q K + I L+ NP +I MDEP +G+ A +
Sbjct: 139 EFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193
Query: 842 RAVRNTVDTGRTVV 855
V G T +
Sbjct: 194 NHVLELKAKGITFL 207
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 6e-14
Identities = 59/245 (24%), Positives = 96/245 (39%), Gaps = 59/245 (24%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPK 728
Q+L ++ PG +TALVG +G+GK+T+ G+ + + G P
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPL 83
Query: 729 EQ---STFARISGYVEQEDVHSP---QVTIEESLWFSANLR--LPKEISKDQ-------- 772
Q V QE P + E N+ L + + ++
Sbjct: 84 VQYDHHYLHTQVAAVGQE----PLLFGRSFRE------NIAYGLTRTPTMEEITAVAMES 133
Query: 773 -RHEFVEEVMSLVE-LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTS 830
H+F+ + D+ VG G+ LS QR+ + +A L+ P ++ +D TS
Sbjct: 134 GAHDFI---SGFPQGYDTE----VGETGN-QLSGGQRQAVALARALIRKPRLLILDNATS 185
Query: 831 GLDARAAAIVMRAV-RNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGV 889
LDA V R + + RTV+ Q S+ A +L +K G V + G
Sbjct: 186 ALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-AERA-HHILFLK-EGSVC---EQGT 239
Query: 890 HSQIM 894
H Q+M
Sbjct: 240 HLQLM 244
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 65/241 (26%), Positives = 113/241 (46%), Gaps = 47/241 (19%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYP--- 727
+ + L +++ G ALVG +G+GK+T+ +L R Y EGDIKI G
Sbjct: 30 QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVNK 85
Query: 728 -KEQSTFARISGYVEQEDV--HSPQVTIEESLWFSANLRLPKEISKD----------QRH 774
S + I G V Q+ + + TI+ N+ K + D Q +
Sbjct: 86 YNRNSIRSII-GIVPQDTILFNE---TIKY------NILYGKLDATDEEVIKATKSAQLY 135
Query: 775 EFVEEVMSLVE-LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
+F+ +L + D++ VG+ G LS +R+R+ IA L+ +P I+ DE TS LD
Sbjct: 136 DFI---EALPKKWDTI----VGNKGM-KLSGGERQRIAIARCLLKDPKIVIFDEATSSLD 187
Query: 834 ARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQI 893
++ + +AV + + RT++ H+ S I A + ++L+ +G V + G H +
Sbjct: 188 SKTEYLFQKAVED-LRKNRTLIIIAHRLST-ISSA-ESIILLNKGKIV----EKGTHKDL 240
Query: 894 M 894
+
Sbjct: 241 L 241
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 2e-13
Identities = 60/247 (24%), Positives = 105/247 (42%), Gaps = 65/247 (26%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYP- 727
Q+L ++S P + A G SG GK+T+ AG I I G P
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQPI 66
Query: 728 ---KEQSTFARISGYVEQEDV-------------HSPQVTIEESLWF---SANLRLPKEI 768
++ ++I G+V Q+ T E+ LW A
Sbjct: 67 DNISLENWRSQI-GFVSQDSAIMAGTIRENLTYGLEGDYTDED-LWQVLDLAFA------ 118
Query: 769 SKDQRHEFVEEVMSLVE-LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDE 827
FV ++ + L++ VG G +S QR+RL IA + NP I+ +DE
Sbjct: 119 -----RSFV---ENMPDQLNTE----VGERGV-KISGGQRQRLAIARAFLRNPKILMLDE 165
Query: 828 PTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887
T+ LD+ + ++V +A+ +++ GRT + H+ S I +A D++ +++G
Sbjct: 166 ATASLDSESESMVQKAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKGQIT----GS 218
Query: 888 GVHSQIM 894
G H++++
Sbjct: 219 GKHNELV 225
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 8e-13
Identities = 34/182 (18%), Positives = 65/182 (35%), Gaps = 34/182 (18%)
Query: 660 DTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY-IE 718
D S K L L+ + G +G GK+TLM +A + G+ +
Sbjct: 435 DLCNCEFSLAYGAKIL--LNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQ 492
Query: 719 GDIKISGYPKEQSTFARISGYVEQE-DVHSPQVTIEESLWFSANLRLPKEISKDQRHEFV 777
+ + YVE + D ++ + ++ S E +
Sbjct: 493 EECRT--------------VYVEHDIDGTHSDTSVLDFVFESG----------VGTKEAI 528
Query: 778 EEVMSLVELDSLRHAL-VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 836
++ + A+ + + LS + +L +A ++ N I+ +DEPT+ LD
Sbjct: 529 KDKLIEFGFTDEMIAMPISA-----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVN 583
Query: 837 AA 838
A
Sbjct: 584 VA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 3e-04
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQ 860
GLS Q+ +L +A P +I +DEPT+ LD + + +A++ + V+ H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK---EFEGGVIIITHS 957
Query: 861 PSIEIFEAF-----DELLLMKRGGRVIYGG 885
F +E+ +K G G
Sbjct: 958 ------AEFTKNLTEEVWAVKDGRMTPSGH 981
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 60/226 (26%), Positives = 96/226 (42%), Gaps = 50/226 (22%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYP- 727
+ L +VS PG ALVG SGAGK+T++ D+ +G I+I G
Sbjct: 68 ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRIDGQDI 118
Query: 728 ---KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKD----------QRH 774
+ S + I G V Q D TI + N+R + + + H
Sbjct: 119 SQVTQASLRSHI-GVVPQ-DTVLFNDTIAD------NIRYGRVTAGNDEVEAAAQAAGIH 170
Query: 775 EFVEEVMSLVE-LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
+ + M+ E + VG G LS +++R+ IA ++ P II +DE TS LD
Sbjct: 171 DAI---MAFPEGYRTQ----VGERGL-KLSGGEKQRVAIARTILKAPGIILLDEATSALD 222
Query: 834 ARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879
+ ++ V RT + H+ S + A D++L++K G
Sbjct: 223 TSNERAIQASL-AKVCANRTTIVVAHRLST-VVNA-DQILVIKDGC 265
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 4e-11
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 692 ALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFARISGYVEQEDVHSP 748
L+G +GAGK+ ++++AG + G + I+ P E+ R G+V Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 749 QVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808
+++ ++ + LR + + +R V E+ + + L LS +R+
Sbjct: 84 HLSVYRNIAYG--LR---NVERVERDRRVREMAEKLGIAHLLDRKPAR-----LSGGERQ 133
Query: 809 RLTIAVELVANPSIIFMDEPTSGLDAR 835
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 5e-11
Identities = 53/203 (26%), Positives = 88/203 (43%), Gaps = 46/203 (22%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKIS 724
+ + +L +++ G A VG SG GK+TL+ DV +G+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 725 GYPKEQSTFA---RISGYVEQEDVHSPQVTIEESLWFSANLRLPK-EISKDQ-------- 772
G+ + G V+Q D T++E N+ L + + ++
Sbjct: 402 GHNIKDFLTGSLRNQIGLVQQ-DNILFSDTVKE------NILLGRPTATDEEVVEAAKMA 454
Query: 773 -RHEFVEEVMSLVE-LDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTS 830
H+F+ M+L + D+ VG G LS Q++RL+IA + NP I+ +DE TS
Sbjct: 455 NAHDFI---MNLPQGYDTE----VGERGV-KLSGGQKQRLSIARIFLNNPPILILDEATS 506
Query: 831 GLDARAAAIVMRAVRNTVDTGRT 853
LD + +I+ A+ RT
Sbjct: 507 ALDLESESIIQEALDVLSK-DRT 528
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 9e-11
Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 35/198 (17%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKE 729
+++ L N++ G ALVG SG+GK+T+ ++ T Y EG I + G+
Sbjct: 353 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI----TRFYDIDEGHILMDGHDLR 408
Query: 730 QSTFA---RISGYVEQEDVHSPQVTIEESLWFSANLRL--PKEISKDQ---------RHE 775
+ T A V Q +VH T+ N+ +E S++Q +
Sbjct: 409 EYTLASLRNQVALVSQ-NVHLFNDTVAN------NIAYARTEEYSREQIEEAARMAYAMD 461
Query: 776 FVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 835
F+ + +D+ ++G G LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 462 FINK------MDNGLDTIIGENGV-LLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 836 AAAIVMRAVRNTVDTGRT 853
+ + A+ + + RT
Sbjct: 515 SERAIQAAL-DELQKNRT 531
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 1e-10
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 35/192 (18%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKEQSTFA- 734
LS+VS G ALVG SG+GK+T+ ++ T Y G I + G+
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLF----TRFYDVDSGSICLDGHDVRDYKLTN 414
Query: 735 --RISGYVEQEDVHSPQVTIEESLWFSANLRL--PKEISKDQ---------RHEFVEEVM 781
R V Q +VH TI N+ E +++Q EF+E
Sbjct: 415 LRRHFALVSQ-NVHLFNDTIAN------NIAYAAEGEYTREQIEQAARQAHAMEFIEN-- 465
Query: 782 SLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 841
+ ++G G+ LS QR+R+ IA L+ + ++ +DE TS LD + +
Sbjct: 466 ----MPQGLDTVIGENGT-SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQ 520
Query: 842 RAVRNTVDTGRT 853
A+ + + +T
Sbjct: 521 AAL-DELQKNKT 531
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 44/227 (19%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 735
L +++ G L A+ GS+GAGKT+L+ ++ G + EG IK SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 736 ISGYVEQEDVHSPQVTIEESLW-FSANLR---LPKEISKDQRHEFVEEVMSLVE-LDSLR 790
IS + Q W ++ + + R+ V + L E +
Sbjct: 101 IS-FCSQNS------------WIMPGTIKENIIGVSYDE-YRYRSVIKACQLEEDISKFA 146
Query: 791 HA---LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNT 847
++G G LS QR R+++A + + + +D P LD + +
Sbjct: 147 EKDNIVLGEGGI-TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205
Query: 848 VDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
+ +T + + +E + D++L++ G + G S++
Sbjct: 206 LMANKTRILVTSK--MEHLKKADKILILH-EGSSYFYGT---FSELQ 246
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 23/165 (13%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFA 734
+ VS G + L+G SG+GKTT++ ++AG R T G + G +++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 735 RISGYVEQEDVHS----PQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR 790
R G V Q + +T+ +++ F LR K + KD+ V E++ + L+S
Sbjct: 87 RNVGLVFQ----NYALFQHMTVYDNVSFG--LRE-KRVPKDEMDARVRELLRFMRLESYA 139
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 835
+ LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 140 NRFPHE-----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 2e-10
Identities = 72/464 (15%), Positives = 137/464 (29%), Gaps = 122/464 (26%)
Query: 3 LLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAEL 62
L+ G GSGK+ + L V + + D I L
Sbjct: 154 LIDGVLGSGKTWVAL--------------------------DVCLSYKVQCKMDFKIFWL 187
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS--VS 120
++ C K L +++ R + + ++ S+ + S
Sbjct: 188 NLK-------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE------MIVGPRKTLFMDEIST 174
Y N L L L V ++ + K +TT + + +D S
Sbjct: 241 KPYE-NCL-LVL--LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 175 GLDSSTTFQIV-KCVRNFV----HQMDATALMAL------LQPPPETFE-----LFDDLV 218
L ++ K + ++ T L ++ T++ D L
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 219 LLSDGYLVYQGPRAEVLEFFESLG-FRLPPRKGV---ADFLQEVTSKKDQAKYWADTSKP 274
+ + L P AE + F+ L F L W D
Sbjct: 357 TIIESSLNVLEP-AEYRKMFDRLSVF----PPSAHIPTILLS---------LIWFD-VIK 401
Query: 275 YVFLPVSEIANAFKSSRFGKSL------ESSLAVP--FDKSKSHPSALATT-KYAVSKWE 325
V + N SL ES++++P + + K + V +
Sbjct: 402 SD---VMVVVNKLHK----YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 326 LFRTCFAREILLISRHRFFYMFRTCQVAFVGFLTCTMFLKTRQHPTDEKKG---ALYLNC 382
+ +T + +++ ++FY + +G LK +H E+ ++L+
Sbjct: 455 IPKTFDSDDLIPPYLDQYFY-------SHIGH-----HLKNIEH--PERMTLFRMVFLDF 500
Query: 383 HFFG----MVHMMFNCFSELPILISRLPVFYKQ--RDNYFHPAW 420
F +N + + +L FYK DN P +
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLK-FYKPYICDN--DPKY 541
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 3e-10
Identities = 64/454 (14%), Positives = 137/454 (30%), Gaps = 114/454 (25%)
Query: 581 YAWLFNNIMTLALAYLNPLRKSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKKKG 640
Y +L + I T P +++ I+ DR N +
Sbjct: 91 YKFLMSPIKT---EQRQPSMMTRMYIEQRDRLYNDNQ----------------------- 124
Query: 641 MIMPFHPLTMTFHNISYYVDTPQAMRSKGIHE--KKLQLLSNVSGIFSPGVLTALVGSSG 698
F +N+S R + + + L L + + G G
Sbjct: 125 ---VFAK-----YNVS---------RLQPYLKLRQALLELRPAKNVL-------IDGVLG 160
Query: 699 AGKTTL-MDVLAGRKTGGYIEGDI---KISGYPKEQSTFARISGYVEQEDVHSPQVTIEE 754
+GKT + +DV K ++ I + ++ + + Q D P T
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID---PNWTSRS 217
Query: 755 SLWFSANLRLPKEISKDQRHEFVEE---VMSLVELDSLRHALVGSPGSFG---LSTEQRK 808
S+N++L + + ++ L+ L ++++A + + L T + K
Sbjct: 218 D--HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 809 RLTIAVELVANPSIIFMDEPTSGL-DARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFE 867
++T + A + I +D + L +++++ + V T + + I
Sbjct: 276 QVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 868 AF--DEL--------LLMKRGGRVIYGGKLGVHSQ---IMIDYFQGL----DGIPLIPSG 910
D L + + +I + ++ F L IP+
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTII---ESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTI 390
Query: 911 YNPATWVLEV----TTTAVEEKLGVDFAN---VYKNSEQYREVESSIKSL----SVPPDD 959
+L + + + V K ++ SI S+ V ++
Sbjct: 391 ------LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST---ISIPSIYLELKVKLEN 441
Query: 960 SEPL--KFASTYS--QNWLSQFFICLWKQNLVYW 989
L Y+ + + S I + Y
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 5e-06
Identities = 95/639 (14%), Positives = 189/639 (29%), Gaps = 174/639 (27%)
Query: 131 DL-CSDTVVGSEMLRGVSGGQKKRVTTGEM--IVG-PRKTLFMDEISTGLDSSTTFQIVK 186
+ C D +M + + ++ E+ I+ + L S ++V+
Sbjct: 32 NFDCKDV---QDMPKSI-------LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE-EMVQ 80
Query: 187 CVRNFVHQMDATALMALL-----QPPPETFE-------LFDDLVLLSDGYLVYQGPRAE- 233
V +++ LM+ + QP T L++D + + Y R +
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK----YNVSRLQP 136
Query: 234 VLEFFESLGFRLPPRKGV--------------ADFLQ--EVTSKKDQAKYWADTSKPYVF 277
L+ ++L L P K V D +V K D +W +
Sbjct: 137 YLKLRQAL-LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN--CN 193
Query: 278 LPVSEIANAFKSSRFGKSLESSLAVPFDKSKSHPSALATTKYAVS---KWELFRTCFARE 334
P + + + ++ + D S + + + + + K + + C
Sbjct: 194 SPETVLEML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---- 246
Query: 335 ILLISRHRFFYMFRTCQV--AFVGFLTCTMFLKTR-------------QHPT-------- 371
LL+ + + + AF L+C + L TR H +
Sbjct: 247 -LLVLLN-----VQNAKAWNAFN--LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 372 --DEKKG--ALYLNCHFFGMVHMMFNCFSELPILISRLPVFYKQR----DNYFHPAWAWS 423
DE K YL+C + + P +S + + DN+ H
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTT---NPRRLSIIAESIRDGLATWDNWKH------ 349
Query: 424 IASWILRVPLSIIEAVVWSCIVYYTLGFAPGAGRFFRYMLLLFS----IHQMALGLYRMM 479
+ L +IIE S + P R L +F I + L L
Sbjct: 350 VNCDKLT---TIIE----SSLNV----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 480 ASIARDMVIANTFGSASMLAILLLGGFIIPKESIKSWWIWMYWVSPLSYGQSAISVNEFT 539
+ MV+ N S++ + P Y + + +
Sbjct: 399 VIKSDVMVVVNKLHKYSLV---------------EKQPKESTISIPSIYLELKVKLENEY 443
Query: 540 ATRWMKKSAIG--NNTVGYNVLHSHSLPTDDYWYW-----LGVGVMLLYAWLFNNIMTLA 592
A + +S + N ++ D Y+Y L LF +
Sbjct: 444 A---LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV---- 496
Query: 593 LAYLNPLRKSQVVIQSDDREENSVKKGVASQGCELKTTSSREDGKK-KGMIMPFHP-LTM 650
+L+ R ++ ++ + ++ + K K I P
Sbjct: 497 --FLD-FR----FLE------QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 651 TFHNISYYVDTPQA--MRSKGIHEKKLQ--LLSNVSGIF 685
+ I ++ + + SK + L+ L++ IF
Sbjct: 544 LVNAILDFLPKIEENLICSK--YTDLLRIALMAEDEAIF 580
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 3e-10
Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 26/151 (17%)
Query: 692 ALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFARISGYVEQEDVHS- 747
++G +GAGKT ++++AG G I ++ E+ +V Q +
Sbjct: 30 VILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK----HDIAFVYQ----NY 81
Query: 748 ---PQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804
P + ++++L F +R+ K I +R V + ++++ L +P + LS
Sbjct: 82 SLFPHMNVKKNLEFG--MRMKK-IKDPKR---VLDTARDLKIEHLLDR---NPLT--LSG 130
Query: 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDAR 835
+++R+ +A LV NP I+ +DEP S LD R
Sbjct: 131 GEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 5e-10
Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 19/165 (11%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFA 734
L+++S PG + ++G+SG GKTTL+ LAG + G I I
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLR---- 790
R GY+ QE V P +T+ ++ + L K Q + +E ++ L + L
Sbjct: 80 RRLGYLVQEGVLFPHLTVYRNIAYG--LGNGK-GRTAQERQRIEAMLELTGISELAGRYP 136
Query: 791 HALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 835
H L G G Q++R +A L +P +I +DEP S LD +
Sbjct: 137 HELSG--G-------QQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 55/182 (30%), Positives = 88/182 (48%), Gaps = 37/182 (20%)
Query: 678 LSNVSGIFSPGVLTA---------------LVGSSGAGKTTLMDVLAG--RKTGGYIE-G 719
+ NVS +F G + A ++G SGAGKTT M ++AG + G +
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFD 65
Query: 720 DIKISGY------PKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQR 773
D ++ P++ R G V Q P +T E++ F L K +SK++
Sbjct: 66 DRLVASNGKLIVPPED-----RKIGMVFQTWALYPNLTAFENIAFP--LTNMK-MSKEEI 117
Query: 774 HEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
+ VEEV ++++ + L P LS Q++R+ +A LV +PS++ +DEP S LD
Sbjct: 118 RKRVEEVAKILDIHHV---LNHFPRE--LSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
Query: 834 AR 835
AR
Sbjct: 173 AR 174
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 46/222 (20%), Positives = 87/222 (39%), Gaps = 46/222 (20%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 735
L +++ G L A+ GS+GAGKT+L+ ++ G + EG IK SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 736 ISGYVEQEDVHSPQVTIEESLW-FSANLR------LPKEISKDQRHEFVEEVMSLVE-LD 787
IS + Q W ++ + + + R+ V + L E +
Sbjct: 71 IS-FCSQFS------------WIMPGTIKENIIFGVSYD---EYRYRSVIKACQLEEDIS 114
Query: 788 SLRHA---LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 844
++G G LS QR R+++A + + + +D P LD + +
Sbjct: 115 KFAEKDNIVLGEGGI-TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 173
Query: 845 RNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
+ +T + + +E + D++L++ G + G
Sbjct: 174 VCKLMANKTRILVTSK--MEHLKKADKILILH-EGSSYFYGT 212
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 24/171 (14%)
Query: 673 KKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKE 729
+ +Q L+NVS G + ++G+SGAGK+TL+ + R T G + +++ +
Sbjct: 39 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSES 98
Query: 730 QSTFARIS-GYVEQEDVH---SPQVTIEESLWFSANLRLPKEI---SKDQRHEFVEEVMS 782
+ T AR G + Q H T+ N+ LP E+ KD+ V E++S
Sbjct: 99 ELTKARRQIGMIFQ---HFNLLSSRTVFG------NVALPLELDNTPKDEVKRRVTELLS 149
Query: 783 LVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 833
LV L + P + LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 150 LVGLGDKHDSY---PSN--LSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 42/167 (25%)
Query: 693 LVGSSGAGKTTLMDVLAGRKTGGYI-EGDIKISGY------PKE-------QSTFARISG 738
L+G SG+GK+TL+ +AG G I PK+ Q+ +A
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPKDRNVGLVFQN-WAL--- 86
Query: 739 YVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPG 798
Y P +T+ +++ F L L K +++ + V EV ++ +D L L P
Sbjct: 87 Y--------PHMTVYKNIAFP--LELRK-APREEIDKKVREVAKMLHIDKL---LNRYPW 132
Query: 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRA 843
LS Q++R+ IA LV P ++ +DEP S LDA R +RA
Sbjct: 133 Q--LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 59/224 (26%), Positives = 94/224 (41%), Gaps = 40/224 (17%)
Query: 672 EKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGD-IKI 723
+KK +L +++ PG ALVG +G+GKTT++ DV G I D I I
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV-----DRGQILVDGIDI 419
Query: 724 SGYPKEQ--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVM 781
+ S+ G V Q D T++E NL+ E ++E
Sbjct: 420 RKIKRSSLRSSI----GIVLQ-DTILFSTTVKE------NLKYGNP---GATDEEIKEAA 465
Query: 782 SLVELDSLRHAL-------VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 834
L D L + G LS QR+ L I +ANP I+ +DE TS +D
Sbjct: 466 KLTHSDHFIKHLPEGYETVLTDNGE-DLSQGQRQLLAITRAFLANPKILILDEATSNVDT 524
Query: 835 RAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
+ + A+ + G+T + H+ + I A D +++++ G
Sbjct: 525 KTEKSIQAAM-WKLMEGKTSIIIAHRLNT-IKNA-DLIIVLRDG 565
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 4e-08
Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 41/213 (19%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQSTFAR 735
L+ ++ G L A+VG G GK++L+ L K EG + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 736 ISGYVEQEDVHSPQVTIEESLW-FSANLR---LPKEISKDQRHEFVEEVMSLVE-LDSLR 790
++ YV Q+ W + +LR L ++ + V + +L+ L+ L
Sbjct: 68 VA-YVPQQA------------WIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILP 114
Query: 791 HA---LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV--R 845
+G G LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 115 SGDRTEIGEKG-VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGP 173
Query: 846 NTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
+ +T + H + D +++M G
Sbjct: 174 KGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 6e-08
Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 36/198 (18%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 737
L N+S SPG L+G +G+GK+TL+ EG+I+I G
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV--------SWD 85
Query: 738 GYVEQEDVHS-----PQVTIEESLWFSANLRL---PKEISKDQRHEFVEEVMSLVEL--- 786
+ E PQ + FS R P DQ + +V V L
Sbjct: 86 S-ITLEQWRKAFGVIPQ----KVFIFSGTFRKNLDPNAAHSDQE---IWKVADEVGLRSV 137
Query: 787 -DSLRHAL---VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 842
+ L + G LS ++ + +A +++ I+ +DEP++ LD I+ R
Sbjct: 138 IEQFPGKLDFVLVDGGC-VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRR 196
Query: 843 AVRNTVDTGRTVVCTIHQ 860
++ TV+ +
Sbjct: 197 TLKQAF-ADCTVILCEAR 213
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 7e-08
Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 42/167 (25%)
Query: 693 LVGSSGAGKTTLMDVLAGRKTGGYI-EGDIKISGY------PKE-------QSTFARISG 738
L+G SG GKTT + ++AG + EG I PK+ QS +A
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDRNISMVFQS-YAV--- 94
Query: 739 YVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPG 798
+ P +T+ E++ F L++ K KD+ + V L++++ L L P
Sbjct: 95 W--------PHMTVYENIAFP--LKIKK-FPKDEIDKRVRWAAELLQIEEL---LNRYPA 140
Query: 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRA 843
LS QR+R+ +A +V P ++ MDEP S LDA R A MRA
Sbjct: 141 Q--LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 9e-08
Identities = 53/167 (31%), Positives = 76/167 (45%), Gaps = 42/167 (25%)
Query: 693 LVGSSGAGKTTLMDVLAGRKTGGYI-EGDIKISGY------PKE-------QSTFARISG 738
L+G SG GKTT + +LAG G+I PK Q+ +A
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPKYREVGMVFQN-YAL--- 86
Query: 739 YVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPG 798
Y P +T+ E++ F LR + ISKD+ + V E+ + +D+L L P
Sbjct: 87 Y--------PHMTVFENIAFP--LRARR-ISKDEVEKRVVEIARKLLIDNL---LDRKPT 132
Query: 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRA 843
LS Q++R+ +A LV P ++ DEP S LDA R MRA
Sbjct: 133 Q--LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 14/165 (8%)
Query: 726 YPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVE 785
+ ++ Y + E + A K R E + + +V
Sbjct: 180 SGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVW 239
Query: 786 LDSLRHALVGSPG---SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 842
R S G + GL+ RL +++ L S++ +DEPT LD ++
Sbjct: 240 EGKERPLTFLSGGERIALGLAF----RLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT 295
Query: 843 AVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKR-----GGRVI 882
+ + V+ H E+ +A D ++ + V+
Sbjct: 296 IMERYLKKIPQVILVSHDE--ELKDAADHVIRISLENGSSKVEVV 338
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 3e-07
Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 28/192 (14%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQ 730
+ + + G + L+G++GAGKTT + +AG R G I I+ P
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 731 STFARISGYVEQEDVHSPQ-------VTIEESLWFSANLRLPKEISKDQRHEFVEEVMSL 783
I P+ +T+ E+L A R K+ +E + SL
Sbjct: 78 INRMGI--------ALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSL 125
Query: 784 V-ELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 842
L L G+ LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 126 FPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE 180
Query: 843 AVRNTVDTGRTV 854
++ G T+
Sbjct: 181 VIQKINQEGTTI 192
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 9e-04
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV-QRASAYIGQT--DNHI- 59
L+G G+GK+T L A+AG + + G I +NG ++ I I
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIF 93
Query: 60 AELTVRETLDFAARCQGANDSFAA 83
ELTV E L A + +
Sbjct: 94 PELTVYENLMMGAYNRKDKEGIKR 117
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 4e-07
Identities = 48/209 (22%), Positives = 77/209 (36%), Gaps = 57/209 (27%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYP-KE 729
LS V+ PG L A++G +G+GK+TLM D G +++ +
Sbjct: 359 LSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP---------ERGRVEVDELDVRT 409
Query: 730 --QSTFARISGYVEQEDVHSPQV------TIEESLWFSANLRLPKEISKD---------- 771
V PQ TI+E NL+ +E + D
Sbjct: 410 VKLKDLRGHISAV-------PQETVLFSGTIKE------NLKWGREDATDDEIVEAAKIA 456
Query: 772 QRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 831
Q H+F+ L + V G S Q++RL+IA LV P ++ +D+ TS
Sbjct: 457 QIHDFIIS------LPEGYDSRVERGGR-NFSGGQKQRLSIARALVKKPKVLILDDCTSS 509
Query: 832 LDARAAAIVMRAVRNTVDTGRTVVCTIHQ 860
+D ++ ++ T I Q
Sbjct: 510 VDPITEKRILDGLKR--YTKGCTTFIITQ 536
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 5e-07
Identities = 47/169 (27%), Positives = 71/169 (42%), Gaps = 40/169 (23%)
Query: 693 LVGSSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKEQSTFARISGYVEQEDVHS---- 747
L+G SG GKTT + ++AG + G I I ++ + V
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGD--------KLVADPEKGIFVPPKDRD 82
Query: 748 -----------PQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
P +T+ +++ F L+L K + + + + V EV L+ L L L
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFP--LKLRK-VPRQEIDQRVREVAELLGLTEL---LNRK 136
Query: 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRA 843
P LS QR+R+ + +V P + MDEP S LDA R MRA
Sbjct: 137 PRE--LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 3e-06
Identities = 47/176 (26%), Positives = 72/176 (40%), Gaps = 45/176 (25%)
Query: 692 ALVGSSGAGKTTLMDVLAGRKTGGY--IEGDIKISG---------------------YPK 728
AL+G +GAGK+TL +LAG Y G+I + G YP
Sbjct: 33 ALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENILELSPDERARKGLFLAFQYPV 90
Query: 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS 788
E + G VTI L + +L +E+ + V++ + L++ D
Sbjct: 91 E------VPG-----------VTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDE 133
Query: 789 LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 844
+ + + G S ++KR I LV P+ +DE SGLD A +V R V
Sbjct: 134 ---SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGV 186
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 8e-04
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV-QRASA 50
L+GP G+GKSTL LAG + + G I +G + E +RA
Sbjct: 34 LMGPNGAGKSTLGKILAGDPEYTVE-RGEILLDGENILELSPDERARK 80
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 7e-05
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 23/214 (10%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-----K 728
L++L ++ G + ++G SG+GK+T + L + + EG+I I G
Sbjct: 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDT 93
Query: 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRL-PKEISKDQRHEFVEEVMSLVELD 787
+ G V Q P +T+ N+ L P ++ K R + + M L++
Sbjct: 94 NLNKVREEVGMVFQRFNLFPHMTVLN------NITLAPMKVRKWPREKAEAKAMELLDKV 147
Query: 788 SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNT 847
L+ P S LS Q +R+ IA L P I+ DEPTS LD V+ ++
Sbjct: 148 GLKDKAHAYPDS--LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL 205
Query: 848 VDTGRTVVCTIHQPSIEI-F--EAFDELLLMKRG 878
+ G T+V H E+ F E D +L M G
Sbjct: 206 ANEGMTMVVVTH----EMGFAREVGDRVLFMDGG 235
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFE 867
RL +++ L S++ +DEPT LD ++ + + V+ H E+ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 868 AFDELLLM-----KRGGRVI 882
A D ++ + V+
Sbjct: 128 AADHVIRISLENGSSKVEVV 147
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 46/169 (27%)
Query: 693 LVGSSGAGKTTLMDVLAGRKTGGYI-EGDIKISGY------PKE-------QSTFARISG 738
VG SG GK+TL+ ++AG +T I GD+ I P E QS +A
Sbjct: 34 FVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAERGVGMVFQS-YAL--- 86
Query: 739 YVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL--RHALVGS 796
Y P +++ E++ F L+L K+ ++ V +V +++L L R
Sbjct: 87 Y--------PHLSVAENMSFG--LKLAG-AKKEVINQRVNQVAEVLQLAHLLDRK----- 130
Query: 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRA 843
P + LS QR+R+ I LVA PS+ +DEP S LDA R MR
Sbjct: 131 PKA--LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ---MRI 174
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 44/202 (21%), Positives = 73/202 (36%), Gaps = 63/202 (31%)
Query: 692 ALVGSSGAGKTTLMDVLAGRKTGGY--IEGDIKISG---------------------YPK 728
A++G +G+GK+TL LAGR+ Y G ++ G YP
Sbjct: 50 AIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPV 107
Query: 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLP----KEISKDQRHEFVEEVMSLV 784
E I G V+ + L + N + + + + +EE ++L+
Sbjct: 108 E------IPG-----------VSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALL 150
Query: 785 ELDSLRHALVGSPGSF-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 837
++ G S ++KR I V P + +DE SGLD A
Sbjct: 151 KMPE----------DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDAL 200
Query: 838 AIVMRAVRNTVDTGRTVVCTIH 859
+V V + D R+ + H
Sbjct: 201 KVVADGVNSLRDGKRSFIIVTH 222
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV-QRASA 50
++GP GSGKSTL LAG+ D + G++ + G +L RA
Sbjct: 51 IMGPNGSGKSTLSATLAGREDYEVT-GGTVEFKGKDLLALSPEDRAGE 97
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 5e-04
Identities = 44/212 (20%), Positives = 91/212 (42%), Gaps = 30/212 (14%)
Query: 668 KGIHEK--KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKI 723
+H++ ++L VS G + +++GSSG+GK+T + + + + G I + +
Sbjct: 10 IDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQN 69
Query: 724 SGYPKEQSTFARISGYVEQEDVHS------------PQVTIEESLWFSANLRL-PKEISK 770
+++ +++ + + + +T+ E N+ P ++
Sbjct: 70 INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE------NVMEAPIQVLG 123
Query: 771 DQRHEFVEEVMSL---VELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDE 827
+H+ E + V +D P LS Q++R++IA L P ++ DE
Sbjct: 124 LSKHDARERALKYLAKVGIDERAQGKY--PVH--LSGGQQQRVSIARALAMEPDVLLFDE 179
Query: 828 PTSGLDARAAAIVMRAVRNTVDTGRTVVCTIH 859
PTS LD V+R ++ + G+T+V H
Sbjct: 180 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1250 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-31 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-13 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 7e-29 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-18 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-29 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-15 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-28 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-19 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-27 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-12 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-26 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-15 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-26 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-11 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-26 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 7e-16 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-26 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-11 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-26 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-14 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 7e-26 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-16 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-12 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-23 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 9e-13 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-23 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-16 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-22 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-12 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-21 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-13 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-20 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-11 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 5e-20 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 7e-12 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-11 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-11 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-05 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 4e-05 | |
| d1tf7a1 | 242 | c.37.1.11 (A:14-255) Circadian clock protein KaiC | 0.001 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.002 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.003 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 0.003 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 119 bits (300), Expect = 7e-31
Identities = 55/226 (24%), Positives = 107/226 (47%), Gaps = 15/226 (6%)
Query: 669 GIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISG 725
+ E+ + L NV+ G +++G SG+GK+T+++++ + T G + +IK +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 726 YPKEQSTFARIS--GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSL 783
++ T R G+V Q+ P +T E++ + +S ++R + E + +
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 784 VEL-DSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 842
EL + + LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AELEERFANHKPNQ-----LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ 186
Query: 843 AVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887
++ + G+TVV H I + + ++ + + G V KL
Sbjct: 187 LLKKLNEEDGKTVVVVTH--DINVARFGERIIYL-KDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 67.9 bits (166), Expect = 4e-13
Identities = 33/234 (14%), Positives = 79/234 (33%), Gaps = 48/234 (20%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRAS-------AYIGQTD 56
++GP GSGKST+L + G + + + ++ + ++ Q
Sbjct: 36 IMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92
Query: 57 NHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKK 116
N I LT E ++ + ++ E+ + ++ + +
Sbjct: 93 NLIPLLTALENVELPLIFKY--------RGAMSGEERRKRA---------LECLKMAELE 135
Query: 117 HSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGL 176
+ +++ SGGQ++RV + + D+ + L
Sbjct: 136 ERFANHKP---------------NQL----SGGQQQRVAIARALANNPPIILADQPTGAL 176
Query: 177 DSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGP 230
DS T +I++ ++ + T ++ + ++ L DG + +
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHD--INVARFGERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 114 bits (287), Expect = 7e-29
Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 19/225 (8%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 731
+ + L VS + G +T ++G +G+GK+TL++V+ G + G + + K +
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 75
Query: 732 TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEI----------SKDQRHEFVEEVM 781
+ Q ++T+ E+L + +++ E +++
Sbjct: 76 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 135
Query: 782 SLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 841
++L L G LS Q K + I L+ NP +I MDEP +G+ A +
Sbjct: 136 EFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 190
Query: 842 RAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
V G T + H+ + D L +M G++I G+
Sbjct: 191 NHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGR 233
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 82.3 bits (203), Expect = 9e-18
Identities = 50/237 (21%), Positives = 83/237 (35%), Gaps = 36/237 (15%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ----VQRASAYIGQTDNHI 59
++GP GSGKSTL+ + G L + G + + ++ + QT +
Sbjct: 35 IIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 91
Query: 60 AELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSV 119
E+TV E L C G + + + K E+E +
Sbjct: 92 KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEK--------------------- 130
Query: 120 STDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSS 179
+L L L D G +SGGQ K V G ++ K + MDE G+
Sbjct: 131 -AFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG 184
Query: 180 TTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
I V + T L+ D L ++ +G ++ +G E ++
Sbjct: 185 LAHDIFNHVLE-LKAKGITFLII-EHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 115 bits (289), Expect = 7e-29
Identities = 49/233 (21%), Positives = 94/233 (40%), Gaps = 26/233 (11%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARIS 737
L N++ G + A+ GS+G+GKT+L+ ++ G EG IK SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 738 GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSP 797
+ Q P TI+E++ F + E + + + + + ++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLGE- 154
Query: 798 GSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCT 857
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 858 IHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMI---DYFQGLDGIPLI 907
+ +E D++L++ + G + G S++ D+ L G
Sbjct: 215 TSK--MEHLRKADKILILHQ-GSSYF---YGTFSELQSLRPDFSSKLMGYDTF 261
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.2 bits (182), Expect = 7e-15
Identities = 41/236 (17%), Positives = 81/236 (34%), Gaps = 53/236 (22%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
M + G GSGK++LL+ + G+L+ + G I ++G +V ++ Q + I
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG------RV----SFCSQ-FSWIM 109
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
T++E + F L
Sbjct: 110 PGTIKENIIFGVSYDEYRYKSVVKACQL-------------------------------- 137
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
++ +TV+G E +SGGQ+ R++ + +D LD T
Sbjct: 138 ---QQDITKFAEQDNTVLG-EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 193
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
Q+ + + + T ++ + E D +++L G + G +E+
Sbjct: 194 EEQVFESCVCKLMA-NKTRILVTSK--MEHLRKADKILILHQGSSYFYGTFSELQS 246
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 113 bits (284), Expect = 1e-28
Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 15/208 (7%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 731
++ ++ G L+G SG GKTT + ++AG T G I + Y +
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD 77
Query: 732 TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRH 791
R V Q P +T+ E++ F ++ + KD+ + V L++++ L +
Sbjct: 78 ---RNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLN 131
Query: 792 ALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRN-TVDT 850
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 132 RYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 186
Query: 851 GRTVVCTIHQPSIEIFEAFDELLLMKRG 878
T + H E D + +M RG
Sbjct: 187 KVTTIYVTHDQV-EAMTMGDRIAVMNRG 213
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 87.1 bits (216), Expect = 1e-19
Identities = 48/253 (18%), Positives = 89/253 (35%), Gaps = 53/253 (20%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF-QVQRASAYIGQTDNHIAEL 62
LLGP G GK+T L +AG + G I + ++ R + + Q+ +
Sbjct: 37 LLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM 93
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTD 122
TV E + F + + + E ++ +R
Sbjct: 94 TVYENIAFPLKIKK-----------FPKDEIDKRVR------------------------ 118
Query: 123 YVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTF 182
+ +L ++ + +SGGQ++RV IV L MDE + LD+
Sbjct: 119 WAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRV 173
Query: 183 QIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESLG 242
+ ++ ++ T + E + D + +++ G L+ G EV
Sbjct: 174 AMRAEIKKLQQKLKVTTIYV-THDQVEAMTMGDRIAVMNRGQLLQIGSPTEV-------- 224
Query: 243 FRLPPRKGVADFL 255
+ P VA F+
Sbjct: 225 YLRPNSVFVATFI 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 110 bits (276), Expect = 3e-27
Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 22/226 (9%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQ 730
++L VS G + +++GSSG+GK+T + + + + G I I+ +
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 73
Query: 731 STFARIS-----------GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEE 779
V Q +T+ E++ + +SK E +
Sbjct: 74 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA--PIQVLGLSKHDARERALK 131
Query: 780 VMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 839
++ V +D A P LS Q++R++IA L P ++ DEPTS LD
Sbjct: 132 YLAKVGID--ERAQGKYPVH--LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 187
Query: 840 VMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
V+R ++ + G+T+V H+ ++ + G++ G
Sbjct: 188 VLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFL-HQGKIEEEG 231
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 66.4 bits (162), Expect = 2e-12
Identities = 38/249 (15%), Positives = 81/249 (32%), Gaps = 59/249 (23%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF----------------QVQR 47
++G GSGKST L + + G+I NG ++ ++
Sbjct: 33 IIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 89
Query: 48 ASAYIGQTDNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFM 107
+ Q N + +TV E + A + L++ +
Sbjct: 90 RLTMVFQHFNLWSHMTVLENVMEAPI----------QVLGLSKHDARERAL--------- 130
Query: 108 KASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTL 167
L +G+D + + SGGQ++RV+ + L
Sbjct: 131 ---------------KYLAKVGIDERAQGKYPVHL----SGGQQQRVSIARALAMEPDVL 171
Query: 168 FMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVY 227
DE ++ LD ++++ ++ + T ++ + + ++ L G +
Sbjct: 172 LFDEPTSALDPELVGEVLRIMQQL-AEEGKTMVVVTHE-MGFARHVSSHVIFLHQGKIEE 229
Query: 228 QGPRAEVLE 236
+G +V
Sbjct: 230 EGDPEQVFG 238
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 107 bits (269), Expect = 1e-26
Identities = 51/214 (23%), Positives = 89/214 (41%), Gaps = 14/214 (6%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 731
K ++L +S G + L+G +GAGKTT + +++ + + G + + +E
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEPH 71
Query: 732 TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRH 791
++ Y+ +E + E L F A S + E VE + L
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIK 128
Query: 792 ALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTG 851
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G
Sbjct: 129 DRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 183
Query: 852 RTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
T++ + H E+ D + L+ G ++ G
Sbjct: 184 LTILVSSHNML-EVEFLCDRIALIHN-GTIVETG 215
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 73.9 bits (181), Expect = 4e-15
Identities = 44/258 (17%), Positives = 94/258 (36%), Gaps = 55/258 (21%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG--WELDEFQVQRASAYIGQTDNHIAE 61
L+GP G+GK+T L ++ + + SG +T G + +V++ +Y+ +
Sbjct: 33 LIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 89
Query: 62 LTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVST 121
+ E L F A + EI+ +
Sbjct: 90 MQGIEYLRFVAGFYA---------------------SSSSEIEEMV-------------- 114
Query: 122 DYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTT 181
+ + GL + + S G +++ ++ + +DE ++GLD
Sbjct: 115 ERATEIAGLGEKIK-----DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 169
Query: 182 FQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESL 241
++ K ++ Q T L++ E L D + L+ +G +V G E+ E +++
Sbjct: 170 REVRKILKQA-SQEGLTILVS-SHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA- 226
Query: 242 GFRLPPRKGVADFLQEVT 259
+ + + +EV
Sbjct: 227 -------QNIEEVFEEVV 237
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 107 bits (269), Expect = 1e-26
Identities = 45/215 (20%), Positives = 82/215 (38%), Gaps = 12/215 (5%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKEQS 731
+ + + G + L+G++GAGKTT + +AG R G I + +
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 732 TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRH 791
V + P++T+ E+L A R KE K L
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL---FPRLKERLK 134
Query: 792 ALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTG 851
L G+ LS +++ L I L++ P ++ MDEP+ GL + V ++ G
Sbjct: 135 QLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 852 RTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
T++ + +++ G+++ GK
Sbjct: 190 TTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGK 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 63.4 bits (154), Expect = 2e-11
Identities = 44/234 (18%), Positives = 83/234 (35%), Gaps = 43/234 (18%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQ-RASAYIGQTDNHIAEL 62
L+G G+GK+T L A+AG + K + + A + + EL
Sbjct: 37 LIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTD 122
TV E L A + + ++ + L
Sbjct: 97 TVYENLMMGAYNRKDKEGIKRDLEWIFSL------------------------------- 125
Query: 123 YVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTF 182
L + G+ +SGG+++ + G ++ K L MDE S GL
Sbjct: 126 ----FPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVS 176
Query: 183 QIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
++ + ++ ++Q T L+ Q ++ +L G +V +G +E+L+
Sbjct: 177 EVFEVIQK-INQEGTTILLV-EQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 106 bits (267), Expect = 3e-26
Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 15/222 (6%)
Query: 669 GIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGG--YIEGDIKIS 724
+ +Q L+NVS G + ++G+SGAGK+TL+ + R T G ++G +
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT 71
Query: 725 GYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLV 784
E + R G + Q T+ ++ L KD+ V E++SLV
Sbjct: 72 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLV 128
Query: 785 ELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 844
L + + LS Q++R+ IA L +NP ++ DE TS LD ++ +
Sbjct: 129 GLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183
Query: 845 RNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGG 885
++ G T++ H+ + D + ++ G +I
Sbjct: 184 KDINRRLGLTILLITHEMD-VVKRICDCVAVI-SNGELIEQD 223
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 76.5 bits (188), Expect = 7e-16
Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 50/239 (20%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWEL------DEFQVQRASAYIGQTDN 57
++G G+GKSTL+ + GS+ +G EL + + +R I Q N
Sbjct: 36 VIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92
Query: 58 HIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKH 117
++ TV + + E R
Sbjct: 93 LLSSRTVFGNVALPLELDNTP-------------KDEVKRR------------------- 120
Query: 118 SVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
+L+++GL D +SGGQK+RV + K L DE ++ LD
Sbjct: 121 ---VTELLSLVGLGDKHD-----SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
Query: 178 SSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
+TT I++ +++ ++ T L+ + D + ++S+G L+ Q +EV
Sbjct: 173 PATTRSILELLKDINRRLGLTILLI-THEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 106 bits (265), Expect = 3e-26
Identities = 46/219 (21%), Positives = 87/219 (39%), Gaps = 28/219 (12%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KEQSTFA 734
L +SG G + LVG +GAGK+TL+ +AG +G +G I+ +G P + A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 735 RISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALV 794
Y+ Q+ + L + + R E + +V + LD
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST 123
Query: 795 GSPGSFGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRAVRNT 847
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 NQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 848 VDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
G +V + H + L+K GG+++ G+
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 62.6 bits (152), Expect = 3e-11
Identities = 51/243 (20%), Positives = 80/243 (32%), Gaps = 61/243 (25%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIA 60
L+GP G+GKSTLL +AG G GSI + G L+ + ++ AY+ Q
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF 85
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
V L +H + E+
Sbjct: 86 ATPVWHYLTLH-----------------------QHDKTRTELL---------------- 106
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIV-------GPRKTLFMDEIS 173
+ V L LD +SGG+ +RV +++ + L +DE
Sbjct: 107 -NDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPM 160
Query: 174 TGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233
LD + + K + + Q +M+ T LL G ++ G R E
Sbjct: 161 NSLDVAQQSALDKILSA-LCQQGLAIVMS-SHDLNHTLRHAHRAWLLKGGKMLASGRREE 218
Query: 234 VLE 236
VL
Sbjct: 219 VLT 221
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 106 bits (267), Expect = 3e-26
Identities = 51/233 (21%), Positives = 99/233 (42%), Gaps = 19/233 (8%)
Query: 667 SKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 726
+ +++ L N++ G ALVG SG+GK+T+ ++ EG I + G+
Sbjct: 20 TFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGH 77
Query: 727 P---KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSL 783
++ V Q + +E S++Q E ++
Sbjct: 78 DLREYTLASLRNQVALVSQNVHLFNDTVANNIAYA-----RTEEYSREQIEEAARMAYAM 132
Query: 784 VELDSLRHALVGSPGSFG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 841
++ + + L G G LS QR+R+ IA L+ + I+ +DE TS LD + +
Sbjct: 133 DFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 192
Query: 842 RAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
A+ + RT + H+ + E DE+++++ G ++ G HS+++
Sbjct: 193 AALDE-LQKNRTSLVIAHR--LSTIEQADEIVVVED-GIIVERGT---HSELL 238
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 71.4 bits (175), Expect = 4e-14
Identities = 50/236 (21%), Positives = 94/236 (39%), Gaps = 39/236 (16%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
L+G GSGKST+ + D + G I +G +L E+ + + ++
Sbjct: 43 TVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNV- 98
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
AN+ A ++ +R + E R F
Sbjct: 99 ---------HLFNDTVANNIAYARTEEYSREQIEEAAR-MAYAMDF-------------- 134
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
+ +D DT++G E +SGGQ++R+ ++ L +DE ++ LD+ +
Sbjct: 135 ------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 187
Query: 181 TFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
I + Q + T+L+ + T E D++V++ DG +V +G +E+L
Sbjct: 188 ERAIQAALDE--LQKNRTSLVIAHR--LSTIEQADEIVVVEDGIIVERGTHSELLA 239
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 106 bits (265), Expect = 7e-26
Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 30/238 (12%)
Query: 667 SKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGD-IKI 723
S ++ + +L +++ G A VG SG GK+TL++++ T G I D I
Sbjct: 23 SFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI 82
Query: 724 SGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSL 783
+ G V Q+D T++E N+ L + + D+ V E +
Sbjct: 83 KDFLTGS--LRNQIGLV-QQDNILFSDTVKE------NILLGRPTATDEE---VVEAAKM 130
Query: 784 VELDSLRHAL-------VGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 836
L VG G LS Q++RL+IA + NP I+ +DE TS LD +
Sbjct: 131 ANAHDFIMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 189
Query: 837 AAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
+I+ A+ + RT + H+ + D++++++ G ++ G H +++
Sbjct: 190 ESIIQEALDV-LSKDRTTLIVAHR--LSTITHADKIVVIE-NGHIVETGT---HRELI 240
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 77.5 bits (191), Expect = 4e-16
Identities = 51/238 (21%), Positives = 88/238 (36%), Gaps = 44/238 (18%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIG--QTDNH 58
+G G GKSTL+ + D SG I +G + +F IG Q DN
Sbjct: 46 TVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI 102
Query: 59 IAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
+ TV+E + RP + ++A+ +
Sbjct: 103 LFSDTVKENILLG--------------------------RPTATDEEVVEAAKMANAHDF 136
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDS 178
+ L DT VG E +SGGQK+R++ + + L +DE ++ LD
Sbjct: 137 IM--------NLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 187
Query: 179 STTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
+ I + + T L+ + T D +V++ +G++V G E++
Sbjct: 188 ESESIIQEALDVLSKDR--TTLIVAHR--LSTITHADKIVVIENGHIVETGTHRELIA 241
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 101 bits (253), Expect = 7e-25
Identities = 36/189 (19%), Positives = 82/189 (43%), Gaps = 16/189 (8%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFAR 735
+L ++ G + G +G GKTTL+ ++ ++G+I +G P +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKG 70
Query: 736 ISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVG 795
++ +E + ++++E+ L A+L K + + + VE+ L+ L
Sbjct: 71 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKKL-- 123
Query: 796 SPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV-DTGRTV 854
LS +R+ +A L+ N I +D+P +D + V++++ + + G +
Sbjct: 124 ----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 855 VCTIHQPSI 863
+ + + S
Sbjct: 180 ISSREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 65.3 bits (159), Expect = 2e-12
Identities = 29/201 (14%), Positives = 63/201 (31%), Gaps = 48/201 (23%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
+ GP G GK+TLL ++ L G I YNG + +V+ ++ +
Sbjct: 29 VVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNG--VPITKVKGKIFFLPEEIIVPR 83
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
+++V + L A G + + L +E +
Sbjct: 84 KISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKK--------------------- 122
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
L +S G +RV ++ + +D+ +D +
Sbjct: 123 ----------------------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 160
Query: 181 TFQIVKCVRNFVHQMDATALM 201
+++K + + + +
Sbjct: 161 KHKVLKSILEILKEKGIVIIS 181
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 98.4 bits (245), Expect = 2e-23
Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 16/231 (6%)
Query: 667 SKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 726
+L N++ G + +VG SG+GK+TL ++ + + I G+
Sbjct: 8 RFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGH 65
Query: 727 P---KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSL 783
+ + R G V Q++V + I+ + + + K I + + + L
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 125
Query: 784 VELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA 843
E + G+ GLS QR+R+ IA LV NP I+ DE TS LD + ++MR
Sbjct: 126 REGYNTIVGEQGA----GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 844 VRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
+ + GRTV+ H+ S + D +++M+ G+++ GK H +++
Sbjct: 182 MHK-ICKGRTVIIIAHRLS--TVKNADRIIVME-KGKIVEQGK---HKELL 225
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 67.2 bits (164), Expect = 9e-13
Identities = 44/239 (18%), Positives = 88/239 (36%), Gaps = 46/239 (19%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDN 57
+ ++G GSGKSTL + +G + +G +L ++R + Q DN
Sbjct: 31 VIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQ-DN 86
Query: 58 HIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKH 117
+ ++ + + A ++ K +
Sbjct: 87 VLLNRSIIDNISLA-----------------------NPGMSVEKVIYAAKLAGA----- 118
Query: 118 SVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
+ L +T+VG + G+SGGQ++R+ +V K L DE ++ LD
Sbjct: 119 ------HDFISELREGYNTIVGEQG-AGLSGGQRQRIAIARALVNNPKILIFDEATSALD 171
Query: 178 SSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
+ I++ + T ++ + T + D ++++ G +V QG E+L
Sbjct: 172 YESEHVIMRNMHKI--CKGRTVIIIAHR--LSTVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.3 bits (242), Expect = 6e-23
Identities = 54/228 (23%), Positives = 97/228 (42%), Gaps = 15/228 (6%)
Query: 671 HEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--- 727
+ + +L ++ PG +TALVG +G+GK+T+ +L G + + G P
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQ 80
Query: 728 KEQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELD 787
E R V QE + +++E++ + + P + L
Sbjct: 81 YEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQK-PTMEEITAAAVKSGAHSFISGLP 138
Query: 788 SLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNT 847
V GS LS QR+ + +A L+ P ++ +D+ TS LDA + V + + +
Sbjct: 139 QGYDTEVDEAGS-QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYES 197
Query: 848 VD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
+ R+V+ S + E D +L ++ GG + GG H Q+M
Sbjct: 198 PERYSRSVLLITQHLS--LVEQADHILFLE-GGAIREGGT---HQQLM 239
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.2 bits (190), Expect = 5e-16
Identities = 42/239 (17%), Positives = 85/239 (35%), Gaps = 43/239 (17%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG---WELDEFQVQRASAYIGQTDN 57
+T L+GP GSGKST+ L G + +G + + + R A +GQ +
Sbjct: 42 VTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQ-EP 97
Query: 58 HIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKH 117
+ +++E + + + + A
Sbjct: 98 QVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSF------------------------ 133
Query: 118 SVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
+ GL DT V E +SGGQ++ V ++ L +D+ ++ LD
Sbjct: 134 ---------ISGLPQGYDTEVD-EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALD 183
Query: 178 SSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
+++ Q+ + + + + L+ E D ++ L G + G +++E
Sbjct: 184 ANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFLEGGAIREGGTHQQLME 240
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 94.6 bits (235), Expect = 3e-22
Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 14/215 (6%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTF 733
++ + +++ G VG SG GK+TL+ ++AG +T + + I +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTPP 69
Query: 734 ARIS-GYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHA 792
A G V Q P +++ E++ F L K+ ++ V +V +++L L
Sbjct: 70 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR 126
Query: 793 LVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV-DTG 851
+ LS QR+R+ I LVA PS+ +DEP S LDA + + G
Sbjct: 127 KPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 181
Query: 852 RTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
RT++ H E D+++++ GRV GK
Sbjct: 182 RTMIYVTHDQV-EAMTLADKIVVL-DAGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 64.6 bits (157), Expect = 7e-12
Identities = 52/253 (20%), Positives = 88/253 (34%), Gaps = 53/253 (20%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRAS-AYIGQTDNHIAEL 62
+GP G GKSTLL +AG SG + +++ + Q+ L
Sbjct: 31 FVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 87
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTD 122
+V E + F + GA ++ + R +
Sbjct: 88 SVAENMSFGLKLAGAK-------------KEVINQR----------------------VN 112
Query: 123 YVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTF 182
V VL L D + +SGGQ++RV G +V +DE + LD++
Sbjct: 113 QVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 167
Query: 183 QIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESLG 242
Q+ + ++ T + E L D +V+L G + G E+
Sbjct: 168 QMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLEL-------- 218
Query: 243 FRLPPRKGVADFL 255
+ P + VA F+
Sbjct: 219 YHYPADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 93.0 bits (231), Expect = 1e-21
Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 29/229 (12%)
Query: 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQST 732
Q+L ++S P + A G SG GK+T+ +L + T G I I E
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN-- 73
Query: 733 FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL--- 789
+ G+V Q+ E NL E D E + +V+ L S
Sbjct: 74 WRSQIGFVSQDSAIMAGTIRE-------NLTYGLE--GDYTDEDLWQVLDLAFARSFVEN 124
Query: 790 ----RHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVR 845
+ VG G +S QR+RL IA + NP I+ +DE T+ LD+ + ++V +A+
Sbjct: 125 MPDQLNTEVGERGV-KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183
Query: 846 NTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIM 894
+ + GRT + H+ + D++ +++ G++ GK H++++
Sbjct: 184 S-LMKGRTTLVIAHR--LSTIVDADKIYFIEK-GQITGSGK---HNELV 225
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 69.9 bits (171), Expect = 1e-13
Identities = 49/238 (20%), Positives = 82/238 (34%), Gaps = 43/238 (18%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIG--QTDNH 58
+ GP G GKST+ L +G IT +G +D ++ + IG D+
Sbjct: 30 IIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSA 86
Query: 59 IAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHS 118
I T+RE L + D + DL P+
Sbjct: 87 IMAGTIRENLTYGLEGD-YTDEDLWQVLDLAFARSFVENMPDQL---------------- 129
Query: 119 VSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDS 178
+T VG E +SGGQ++R+ + K L +DE + LDS
Sbjct: 130 ----------------NTEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS 172
Query: 179 STTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
+ + K + + + T L+ + T D + + G + G E++
Sbjct: 173 ESESMVQKALDSLMKGR--TTLVIAHR--LSTIVDADKIYFIEKGQITGSGKHNELVA 226
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 90.5 bits (224), Expect = 1e-20
Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 15/225 (6%)
Query: 667 SKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIEGDIKIS 724
SK + K+ L NV+ G ++G SGAGKTT M ++AG + G + D ++
Sbjct: 10 SKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLV 69
Query: 725 GYPKEQST--FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMS 782
+ R G V Q P +T E++ F ++SK++ + VEEV
Sbjct: 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAK 126
Query: 783 LVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 842
++++ + + LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 127 ILDIHHVLNHFPRE-----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARA 181
Query: 843 AVRNTV-DTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
V+ G T++ H P+ +IF D + ++ G+++ GK
Sbjct: 182 LVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVL-VKGKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 63.2 bits (153), Expect = 2e-11
Identities = 43/239 (17%), Positives = 81/239 (33%), Gaps = 50/239 (20%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF------QVQRASAYIGQTDN 57
+LGP G+GK+T + +AG + +G + ++ + R + QT
Sbjct: 36 ILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92
Query: 58 HIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKH 117
LT E + F + ++R
Sbjct: 93 LYPNLTAFENIAFPLTNMKMSKEEI----------RKR---------------------- 120
Query: 118 SVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLD 177
+ V +L + + R +SG Q++RV +V L +DE + LD
Sbjct: 121 ---VEEVAKILDIHHVLNH-----FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
Query: 178 SSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236
+ V+ ++ T L+ P + F + D + +L G LV G ++ +
Sbjct: 173 ARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 88.5 bits (219), Expect = 5e-20
Identities = 53/211 (25%), Positives = 89/211 (42%), Gaps = 15/211 (7%)
Query: 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQ 730
++ + +S G L+G SG GKTT + ++AG + G I GD ++ K
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 731 STFARISG--YVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS 788
+ V Q P +T+ +++ F LR ++ + + + V EV L+ L
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTE 131
Query: 789 LRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV 848
L + LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 132 LLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186
Query: 849 -DTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878
G T + H E D + +M RG
Sbjct: 187 RQLGVTTIYVTHDQV-EAMTMGDRIAVMNRG 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 64.6 bits (157), Expect = 7e-12
Identities = 53/252 (21%), Positives = 84/252 (33%), Gaps = 45/252 (17%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELT 63
LLGP G GK+T L +AG + + G I + D
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLV--------------ADPEKGIFV 76
Query: 64 VRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDY 123
+ D A Q + D + P EID ++
Sbjct: 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE-------------- 122
Query: 124 VLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQ 183
V +LGL + +SGGQ++RV G IV + MDE + LD+ +
Sbjct: 123 VAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR 177
Query: 184 IVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESLGF 243
+ ++ Q+ T + E + D + +++ G L G EV +
Sbjct: 178 MRAELKKLQRQLGVTTIYV-THDQVEAMTMGDRIAVMNRGVLQQVGSPDEV--------Y 228
Query: 244 RLPPRKGVADFL 255
P VA F+
Sbjct: 229 DKPANTFVAGFI 240
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 77.0 bits (189), Expect = 3e-16
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 17/211 (8%)
Query: 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISG-YPKEQSTFARI 736
L N+S G ++G +GAGKT ++++AG I + G + S
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 737 SGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGS 796
+V Q P + +++ NL + K + + V + ++++ L
Sbjct: 74 IAFVYQNYSLFPHMNVKK------NLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-- 125
Query: 797 PGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV-DTGRTVV 855
LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 126 ---LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 856 CTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886
H + E D + ++ G++I GK
Sbjct: 183 HITHDQT-EARIMADRIAVV-MDGKLIQVGK 211
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 62.8 bits (152), Expect = 2e-11
Identities = 51/253 (20%), Positives = 86/253 (33%), Gaps = 56/253 (22%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG-WELDEFQVQRASAYIGQTDNHIAEL 62
+LGP G+GK+ L +AG SG I +G D + A++ Q + +
Sbjct: 31 ILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM 87
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTD 122
V++ L+F R + D +R +
Sbjct: 88 NVKKNLEFGMRMKKIKD-------------PKRVLD------------------------ 110
Query: 123 YVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTF 182
L ++ D +SGG+++RV +V K L +DE + LD T
Sbjct: 111 -TARDLKIEHLLD-----RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 183 QIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESLG 242
+ + + T L E + D + ++ DG L+ G E+
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHD-QTEARIMADRIAVVMDGKLIQVGKPEEI-------- 215
Query: 243 FRLPPRKGVADFL 255
F P VA F+
Sbjct: 216 FEKPVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 74.7 bits (183), Expect = 2e-15
Identities = 45/204 (22%), Positives = 90/204 (44%), Gaps = 20/204 (9%)
Query: 687 PGVLTALVGSSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKEQSTFARISGYVEQE 743
L+G +GAGK+ ++++AG + G + I+ P E+ R G+V Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 744 DVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803
P +++ ++ + + + + +R V E+ + + L LS
Sbjct: 79 YALFPHLSVYRNIAYG-----LRNVERVERDRRVREMAEKLGIAHLLDRKPAR-----LS 128
Query: 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV-DTGRTVVCTIHQPS 862
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 863 IEIFEAFDELLLMKRGGRVIYGGK 886
E DE+ +M GR++ GK
Sbjct: 189 -EAAMLADEVAVM-LNGRIVEKGK 210
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 63.9 bits (155), Expect = 1e-11
Identities = 46/253 (18%), Positives = 86/253 (33%), Gaps = 56/253 (22%)
Query: 4 LLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF-QVQRASAYIGQTDNHIAEL 62
LLGP G+GKS L +AG + + G + NG ++ +R ++ Q L
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 63 TVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTD 122
+V + + R + + +L + P
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP--------------------- 124
Query: 123 YVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTF 182
+SGG+++RV +V + L +DE + +D T
Sbjct: 125 ---------------------ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163
Query: 183 QIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFFESLG 242
+++ +R + D L E L D++ ++ +G +V +G E+
Sbjct: 164 VLMEELRFVQREFDVPILHVTHD-LIEAAMLADEVAVMLNGRIVEKGKLKELFS------ 216
Query: 243 FRLPPRKGVADFL 255
VA+FL
Sbjct: 217 ---AKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 50.8 bits (120), Expect = 1e-07
Identities = 23/191 (12%), Positives = 41/191 (21%), Gaps = 36/191 (18%)
Query: 692 ALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVT 751
+ G G GKTTL+ + R R ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEV--------RDPETKKRTGFRIITTE 53
Query: 752 IEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLT 811
++ ++ S K + + E
Sbjct: 54 GKKKIFSSKFFTSKKLVGSYGVNVQYFE----------------------ELAIPILERA 91
Query: 812 IAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDE 871
+I +DE + D VV TI + E
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 872 LLLMKRGGRVI 882
+ + G +I
Sbjct: 149 IRRLP-GAVLI 158
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 43.4 bits (101), Expect = 4e-05
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 3 LLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNH 58
++ G PG GK+TL+ + +L ++ E + + I
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG---KRAIGFWTEEVRDPETKKRTGFRIITTEGKK 56
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Score = 39.6 bits (91), Expect = 0.001
Identities = 22/187 (11%), Positives = 50/187 (26%), Gaps = 2/187 (1%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIA 60
TL+ G G+GK+ + +G + + +E + + + G +
Sbjct: 28 STLVSGTSGTGKTLFSIQFL--YNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLV 85
Query: 61 ELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVS 120
+ LD + +G + L + + +SV + + S
Sbjct: 86 DEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASS 145
Query: 121 TDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSST 180
+ + M G + + + G
Sbjct: 146 VVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRR 205
Query: 181 TFQIVKC 187
T +I+K
Sbjct: 206 TLEILKL 212
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.1 bits (92), Expect = 0.002
Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 11/129 (8%)
Query: 754 ESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIA 813
E +A+L + E L + + G L+ L A
Sbjct: 295 ELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALA------LLFA 348
Query: 814 VELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELL 873
+ +DE + LD + +R + + + +FE D L+
Sbjct: 349 INSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALV 406
Query: 874 ---LMKRGG 879
++
Sbjct: 407 GVYRQQQEN 415
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 38.9 bits (89), Expect = 0.003
Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 8/115 (6%)
Query: 1 MTLLLGPPGSGKSTLLLALAGKL-------DGNLNKSGSITYNGWELDEFQV-QRASAYI 52
+ L+ P G+GKS L L LA ++ + +G + Y E + R A
Sbjct: 31 VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALG 90
Query: 53 GQTDNHIAELTVRETLDFAARCQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFM 107
+ L N + L R + R + + F
Sbjct: 91 AHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFH 145
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 37.7 bits (86), Expect = 0.003
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 3 LLLGPPGSGKSTLLLALAGKLDGNLNKSGSITY 35
++ GP G GKST LA +LD + G I
Sbjct: 6 IITGPAGVGKSTTCKRLAAQLDNSAYIEGDIIN 38
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1250 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.85 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.78 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.65 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.48 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.42 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.18 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.1 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.05 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.95 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.88 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.67 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.04 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.94 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.9 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.81 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.67 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.53 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.32 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.26 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.16 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.08 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.05 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 97.03 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.96 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.89 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.88 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.86 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.85 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.83 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.78 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.77 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.75 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.73 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.73 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.66 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.65 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.63 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.59 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.59 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.53 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.5 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.5 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.5 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.49 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.47 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.46 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.41 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.4 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.38 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.36 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.31 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.31 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.29 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.28 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.27 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.27 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.26 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.25 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.25 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.23 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.23 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.22 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.22 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.21 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.2 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.2 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.19 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.19 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.19 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.18 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.17 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.16 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.14 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.14 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.13 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.12 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.12 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.11 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.1 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.1 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.09 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.09 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.09 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.09 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.08 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.06 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.04 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.03 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.03 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.02 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.02 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.0 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.98 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.96 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.96 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.95 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.93 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.91 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.89 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.89 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.88 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.88 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.87 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.83 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.82 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.82 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.81 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.8 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.8 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.75 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.75 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.7 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.7 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.7 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.69 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.68 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.68 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.66 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.62 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.62 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.61 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.6 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.58 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.57 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.57 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.57 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.57 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.56 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.54 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.53 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.51 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.51 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.5 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.49 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.49 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.46 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.44 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.43 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.42 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.41 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.39 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.38 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.38 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.36 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.35 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.35 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.33 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.32 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.31 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.3 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.3 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.29 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.29 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.28 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.27 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.26 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.26 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.25 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.25 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.24 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.23 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.22 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.17 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.17 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.17 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.15 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.15 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.14 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 95.13 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.13 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.09 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.08 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.08 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.99 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.98 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.97 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.97 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.97 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.96 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.91 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.89 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.88 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.88 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.87 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.86 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.85 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.84 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.81 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.8 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.8 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.78 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.75 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.74 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.73 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.72 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.68 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.67 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.66 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.66 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.63 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.61 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 94.61 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.61 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.61 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.6 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.59 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.53 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.44 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.41 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.41 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.37 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.37 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.36 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.35 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.35 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.34 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.32 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.29 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.29 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.27 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.25 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.2 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.17 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.14 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.13 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.12 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 94.08 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.05 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.01 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.0 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.98 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.98 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.98 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.97 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.94 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.93 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.93 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.89 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.88 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.88 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.85 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.82 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.78 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.75 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 93.75 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.71 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.71 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.69 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.68 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.67 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.66 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.65 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.65 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.61 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.6 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.56 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.53 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.52 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.52 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.51 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.5 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.48 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.47 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.47 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.46 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.43 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.43 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.42 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.41 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.41 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.35 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.31 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.31 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.3 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.28 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.28 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.24 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.24 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.23 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.22 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.21 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.17 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.15 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.14 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.14 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 93.13 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.1 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.09 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.09 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.07 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.07 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.06 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.04 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.04 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.99 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.94 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.94 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.93 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.92 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 92.92 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.91 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.9 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.9 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.88 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.86 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.85 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.82 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.82 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.78 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.76 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.74 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.71 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.71 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.68 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.63 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.6 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.57 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.54 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.49 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.48 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.47 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.46 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.45 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.44 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.44 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.41 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.41 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.41 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.41 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.4 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.39 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.38 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.34 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.32 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.31 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.31 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 92.29 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.27 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.25 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.18 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.18 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.16 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.13 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 92.08 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.06 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.03 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.03 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.99 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.95 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.94 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.93 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 91.91 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.9 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.9 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.89 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.88 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.86 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.82 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.78 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.75 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.73 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.69 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.61 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.55 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 91.52 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.5 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.48 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.45 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.44 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 91.43 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.43 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.43 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 91.41 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.32 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.3 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.29 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.22 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.19 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.12 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.06 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.05 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.04 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.0 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 90.97 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.95 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 90.94 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 90.89 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 90.86 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 90.72 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.69 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.67 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.62 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.59 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.57 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.53 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.38 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.34 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.21 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 90.2 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 90.09 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.08 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 90.07 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.04 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.0 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.93 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.71 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.47 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.42 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.35 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.29 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 88.23 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 88.22 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.2 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 88.13 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 88.02 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 87.83 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.76 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 87.69 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.52 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.35 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.07 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 87.06 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.87 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.41 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 86.36 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.31 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 86.28 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 86.11 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 85.85 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.8 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 85.56 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 85.52 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 85.23 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 85.02 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.9 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 84.84 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 84.68 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 83.47 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 81.21 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 80.75 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=333.54 Aligned_cols=214 Identities=25% Similarity=0.338 Sum_probs=190.8
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 69999599999278321112544333412100389995773999996999958999998959999980689999979137
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++++. .+++|+|+|+.+++||+++|+||||||||||+++|+|... ..+|+|.++|.++
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred CEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 189986999989-------------9999856066886998999999999809999999964878--8989899999980
Q ss_pred CCC-------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 811-------2233288974798789899999999999862899999988899999999998199432222346999876
Q 000860 729 EQS-------TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFG 801 (1250)
Q Consensus 729 ~~~-------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~~~~~~~g~~~~~~ 801 (1250)
... ..++.+|||+|++.++|.+||+|++.+...++ +.+.++.+++++++++.++|.+..+..+. .
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p~-----~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----E 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----G
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCHH-----H
T ss_conf 356644424532255120022122231011667633068772---99989999999999987599667629933-----4
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCE
Q ss_conf 7978989999999995199677883999999999999999999998628-988999806898899996203015323958
Q 000860 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 802 lSgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
||||||||++|||+|+.+|++|++||||+|||+.+...+++.++++.++ |.|||+++|+.. ++...+|++++|.+ |+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-99996999999989-99
Q ss_pred EEEECCC
Q ss_conf 9990889
Q 000860 881 VIYGGKL 887 (1250)
Q Consensus 881 ~~~~g~~ 887 (1250)
++..|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEECCH
T ss_conf 9998599
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=340.26 Aligned_cols=213 Identities=27% Similarity=0.397 Sum_probs=189.3
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99995999992783211125443334121003899957739999969999589999989599999806899999791378
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++++. .+++|+|+|+.+++||+++|+||||||||||+++|+|... ..+|+|.+||.++.
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 99999999989-------------9999811177886998999998999829999999965878--88888999999778
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 1-122332889747987898999999999998628999999888999999999981994322223469998767978989
Q 000860 730 Q-STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808 (1250)
Q Consensus 730 ~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~~~~~~~g~~~~~~lSgGqr~ 808 (1250)
. ...++.+|||+|++.+++.+||+|++.|...++ +.++++.+++++++++.++|.+..+..+. .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHH
T ss_conf 88644432223433420264333788978999875---99889999999999975788656648965-----69999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 99999999519967788399999999999999999999862-89889998068988999962030153239589990889
Q 000860 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 809 r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
|++||++|+.+|++++|||||+|||+.++..+++.++++.+ .|.|||+++|++. ++...+|++++|.+ |+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999703998899758887889889989999999998742987999948999-99996999999979-999998089
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=337.83 Aligned_cols=214 Identities=24% Similarity=0.362 Sum_probs=191.5
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 69999599999278321112544333412100389995773999996999958999998959999980689999979137
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++++. .+.+|++||+.+++||+++|+||||||||||+++|+|... ..+|+|.++|.++
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 499987999999-------------9999813067887998999999999829999999975899--9878799916413
Q ss_pred CC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 81-12233288974798789899999999999862899999988899999999998199432222346999876797898
Q 000860 729 EQ-STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR 807 (1250)
Q Consensus 729 ~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~~~~~~~g~~~~~~lSgGqr 807 (1250)
.. ...++.+|||+|++.++|.+||+|++.|.+.++ +.++++.+++++++++.++|.+..+..+. .||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHH
T ss_conf 547700015899800335342220999999999873---99999999999999987598556609954-----6999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 9999999995199677883999999999999999999998628-988999806898899996203015323958999088
Q 000860 808 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 808 ~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
||++||++|+.+|++|+|||||+|||+.++..+++.++++.++ |.|+|+++|++. ++...+|++++|.+ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999766404998243068866689899989999999998731980799948999-99986999999989-99999859
Q ss_pred C
Q ss_conf 9
Q 000860 887 L 887 (1250)
Q Consensus 887 ~ 887 (1250)
+
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=334.58 Aligned_cols=216 Identities=28% Similarity=0.399 Sum_probs=190.7
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 69999599999278321112544333412100389995773999996999958999998959999980689999979137
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++++.. +...+|+|||+.+++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEEEEEEECC-----------CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 8999757999889-----------99899804078987998999998999809999999975868--8874599999995
Q ss_pred CC------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 81------122332889747987898999999999998628999999888999999999981994322223469998767
Q 000860 729 EQ------STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGL 802 (1250)
Q Consensus 729 ~~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~~~~~~~g~~~~~~l 802 (1250)
.. ...++.+|||+|+..++|.+||+|++.|....+ +.++++.+++++++++.++|.+..+..++ .|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----EL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCHH-----HC
T ss_conf 13731115312045147730433466665777766556761---37999999999999866591766648954-----59
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCEE
Q ss_conf 978989999999995199677883999999999999999999998628-9889998068988999962030153239589
Q 000860 803 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRV 881 (1250)
Q Consensus 803 SgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~ 881 (1250)
|||||||++|||+|+.+|++|++||||+|||+.+...+++.++++.++ |.|+|+++|++. ++...+|++++|.+ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-99996999999989-999
Q ss_pred EEECCC
Q ss_conf 990889
Q 000860 882 IYGGKL 887 (1250)
Q Consensus 882 ~~~g~~ 887 (1250)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEECCH
T ss_conf 998699
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=330.83 Aligned_cols=218 Identities=24% Similarity=0.342 Sum_probs=190.6
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99995999992783211125443334121003899957739999969999589999989599999806899999791378
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++++... ....++|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC--CCCCCEEECCEEEE
T ss_conf 7998279996999---------814898615057886997999989998988899998758863--66773288676852
Q ss_pred C------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1------1223328897479878989999999999986289999998889999999999819943222234699987679
Q 000860 730 Q------STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLS 803 (1250)
Q Consensus 730 ~------~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~~~~~~~g~~~~~~lS 803 (1250)
. ..+++.+|||+|+..+++.+||+|++.+...++ +.++++.+++++++++.+||.+..+..++ .||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~~-----~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCBS-----CCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHHCCHH-----HCC
T ss_conf 0875551155416643022522279964999999999984---99989999999999997699035548943-----499
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCEEE
Q ss_conf 78989999999995199677883999999999999999999998628-98899980689889999620301532395899
Q 000860 804 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882 (1250)
Q Consensus 804 gGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 882 (1250)
||||||++|||+|+.+|++|++||||+|||+.++..+++.++++.++ |.|||+++|+.. ++...+|++++|.+ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-99986999999979-9999
Q ss_pred EECCCC
Q ss_conf 908898
Q 000860 883 YGGKLG 888 (1250)
Q Consensus 883 ~~g~~~ 888 (1250)
..|++.
T Consensus 221 ~~G~~~ 226 (240)
T d3dhwc1 221 EQDTVS 226 (240)
T ss_dssp EEEETT
T ss_pred EECCHH
T ss_conf 987999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=327.03 Aligned_cols=219 Identities=24% Similarity=0.374 Sum_probs=187.5
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99995999992783211125443334121003899957739999969999589999989599999806899999791378
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|++++|... .+...+|+|+|+.+++||+++|+||||||||||+++|+|... ..+|+|.++|.++.
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCC--CCCCEEEECCEECC
T ss_conf 8999079994899---------820898713377884997999988999982165575068877--77662699999857
Q ss_pred CC---C----CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 11---2----23328897479878989999999999986289999998889999999999819943-2222346999876
Q 000860 730 QS---T----FARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-LRHALVGSPGSFG 801 (1250)
Q Consensus 730 ~~---~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~-~~~~~~g~~~~~~ 801 (1250)
.. . +++.+|||+|++.++|.+||.|++.+....+.....+.+++.+.+.++++.++|.+ ..+..+. .
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~-----~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN-----Q 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG-----G
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCHH-----H
T ss_conf 68855512312555778804124176866888775788872247899999999999988762423455348802-----3
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCE
Q ss_conf 7978989999999995199677883999999999999999999998628-988999806898899996203015323958
Q 000860 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 802 lSgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
||||||||++|||||+.+|++|++||||++||+.++..+++.++++.++ |.|||+++|+++ ....+|++++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHH--HHHHCCEEEEEEC-CE
T ss_conf 89999999998756522788899468765469899999999999999843999999878889--9986998999989-99
Q ss_pred EEEECCC
Q ss_conf 9990889
Q 000860 881 VIYGGKL 887 (1250)
Q Consensus 881 ~~~~g~~ 887 (1250)
++..|+.
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
T ss_conf 9995257
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=326.05 Aligned_cols=219 Identities=23% Similarity=0.337 Sum_probs=193.6
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 69999599999278321112544333412100389995773999996999958999998959999980689999979137
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.+..+|++.++. ++++|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 2 aI~v~nl~k~yg-------------~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEEC-------------CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 789995899999-------------9999806256884897999999999999999999966988--7888799986724
Q ss_pred CC--CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 81--1223328897479878989999999999986289999998889999999999819943222234699987679789
Q 000860 729 EQ--STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQ 806 (1250)
Q Consensus 729 ~~--~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~~~~~~~g~~~~~~lSgGq 806 (1250)
.. ...++.++||||++.+++++|+.|++.|.+.++ ..++.+.++.++.+++.+++.+..+..++ .+||||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~ 138 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGM 138 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHH
T ss_pred CCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHH
T ss_conf 4683988721867500154687866778889899861---79989999999999986797888850453-----379989
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 89999999995199677883999999999999999999998628988999806898899996203015323958999088
Q 000860 807 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGK 886 (1250)
Q Consensus 807 r~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~ 886 (1250)
|||++||++|+.+|++++|||||+|||+.+...+++.+++++++|+||++++|+++ ++...||++++|.+ |++++.|+
T Consensus 139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~ 216 (238)
T d1vpla_ 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216 (238)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999999986599988733798897989999999999999965998999959899-99996999999989-99999928
Q ss_pred CCCCCHHHHH
Q ss_conf 9865046998
Q 000860 887 LGVHSQIMID 896 (1250)
Q Consensus 887 ~~~~~~~~~~ 896 (1250)
+ +++.+
T Consensus 217 ~----~el~~ 222 (238)
T d1vpla_ 217 V----EELKE 222 (238)
T ss_dssp H----HHHHH
T ss_pred H----HHHHH
T ss_conf 9----99986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=328.82 Aligned_cols=209 Identities=24% Similarity=0.310 Sum_probs=183.2
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99995999992783211125443334121003899957739999969999589999989599999806899999791378
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++|+++++.. ..|+|+|+.+++||+++|+||||||||||+++|+|... ..+|+|.++|.++.
T Consensus 2 i~v~nlsk~y~~--------------~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWKN--------------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECSS--------------CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEECC--------------EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 899989999499--------------78843378987998999998999829999999964768--88788999567346
Q ss_pred C-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 1-122332889747987898999999999998628999999888999999999981994322223469998767978989
Q 000860 730 Q-STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808 (1250)
Q Consensus 730 ~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~~~~~~~g~~~~~~lSgGqr~ 808 (1250)
. ...++.+|||+|++.++|.+||+||+.|...++- ..+ +++++++++.+++.+..+..+. .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~---~~~---~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKD---PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCC---HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHH
T ss_pred CCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCC---CCH---HHHHHHHHHHHCCHHHHHCCHH-----HCCHHHHC
T ss_conf 521657405615121111746657788888776405---538---9999999998256555758955-----47999840
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 99999999519967788399999999999999999999862-89889998068988999962030153239589990889
Q 000860 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 809 r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
|++|||+|+.+|++|+|||||+|||+.+...+++.++++.+ .|.|||+++|++. ++...+|++++|.+ |+++..|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred CHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 1403043443677144347876799899999999999998647968999749999-99996999999979-999998699
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=319.09 Aligned_cols=215 Identities=22% Similarity=0.274 Sum_probs=185.7
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 69999599999278321112544333412100389995773999996999958999998959999980689999979137
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++.++. ..++|++||+.+++||++||+||||||||||+++|+|..+ ..+|+|.++|.++
T Consensus 2 ~Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i 66 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNI 66 (258)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCEEECCEEE
T ss_conf 699997899989-------------9998815066886997999998999829999999974766--7899779999993
Q ss_pred CCC----------------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CC
Q ss_conf 811----------------2233288974798789899999999999862899999988899999999998199432-22
Q 000860 729 EQS----------------TFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSL-RH 791 (1250)
Q Consensus 729 ~~~----------------~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~~-~~ 791 (1250)
... ..++.+|||+|++.+++.+||.|++.+..... ...+..+.++++.++++.+++.+. .+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~ 144 (258)
T d1b0ua_ 67 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQG 144 (258)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred CCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 367752000023517679997454489983323141101021365657876--299989999999999998299524430
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCC
Q ss_conf 23469998767978989999999995199677883999999999999999999998628988999806898899996203
Q 000860 792 ALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDE 871 (1250)
Q Consensus 792 ~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 871 (1250)
..++ .|||||+||++||++|+.+|+++++||||+|||+.+...+++.+++++++|.|||+++|++. ++...+|+
T Consensus 145 ~~p~-----~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adr 218 (258)
T d1b0ua_ 145 KYPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 218 (258)
T ss_dssp SCGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCCC-----CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCE
T ss_conf 6822-----05677888989999984399878852455568878888998765541036883389948999-99986999
Q ss_pred EEEEECCCEEEEECCC
Q ss_conf 0153239589990889
Q 000860 872 LLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 872 v~~l~~gg~~~~~g~~ 887 (1250)
+++|.+ |+++..|++
T Consensus 219 i~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 219 VIFLHQ-GKIEEEGDP 233 (258)
T ss_dssp EEEEET-TEEEEEECH
T ss_pred EEEEEC-CEEEEECCH
T ss_conf 999979-999998499
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=319.59 Aligned_cols=215 Identities=22% Similarity=0.347 Sum_probs=182.7
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 06999959999927832111254433341210038999577399999699995899999895999998068999997913
Q 000860 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 727 (1250)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~ 727 (1250)
..++.+|+++++. .+++|+|+|+.+++||+++|+||||||||||+++|+|... ..+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred EEEEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 0799961899989-------------9888830257888997999999999859999999967888--880389842443
Q ss_pred CCCC---CC-CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 7811---22-332889747987898999999999998628999999888999999999981-994322223469998767
Q 000860 728 KEQS---TF-ARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLV-ELDSLRHALVGSPGSFGL 802 (1250)
Q Consensus 728 ~~~~---~~-~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l-~l~~~~~~~~g~~~~~~l 802 (1250)
+... .. +..++|++|+..+++.+||+|++.+.+..+. ..+..++.++++++.+ ++.+..+..++. |
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLGGT-----L 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBSSS-----S
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCHHHHHHCCHHH-----C
T ss_conf 44660888887423556765545776369999998887327----88899999999998741768887585433-----8
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEE
Q ss_conf 97898999999999519967788399999999999999999999862898899980689889999620301532395899
Q 000860 803 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882 (1250)
Q Consensus 803 SgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 882 (1250)
|||||||++||++|+.+|++|+|||||+|||+.+...+++.+++++++|.||++++|+.. ++...+|++++|.+ |+++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv 218 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIV 218 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999999999999998299874003988679999999999999999968998999958899-99996999999989-9999
Q ss_pred EECCCC
Q ss_conf 908898
Q 000860 883 YGGKLG 888 (1250)
Q Consensus 883 ~~g~~~ 888 (1250)
+.|++.
T Consensus 219 ~~g~~~ 224 (240)
T d1ji0a_ 219 LEGKAS 224 (240)
T ss_dssp EEEEHH
T ss_pred EECCHH
T ss_conf 984899
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=317.84 Aligned_cols=217 Identities=24% Similarity=0.291 Sum_probs=186.5
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 69999599999278321112544333412100389995773999996999958999998959999980689999979137
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++.+|++.++. ..++|+|||+.+++||+++|+||||||||||+++|+|..+ ..+|+|.++|.++
T Consensus 4 iL~v~nlsk~yg-------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 699977899979-------------9688712179988997999999999849999999977976--8873799999966
Q ss_pred CCCC----CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC----------CCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8112----233288974798789899999999999862899----------99998889999999999819943222234
Q 000860 729 EQST----FARISGYVEQEDVHSPQVTIEESLWFSANLRLP----------KEISKDQRHEFVEEVMSLVELDSLRHALV 794 (1250)
Q Consensus 729 ~~~~----~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~----------~~~~~~~~~~~v~~~~~~l~l~~~~~~~~ 794 (1250)
.... .++.++|++|++.+++.+||.||+.+....+.. ....+++..++++++++.+++.+..+..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH
T ss_conf 40569999983387257764247887423214301333034504566542135328999999999987619630205953
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEE
Q ss_conf 69998767978989999999995199677883999999999999999999998628988999806898899996203015
Q 000860 795 GSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLL 874 (1250)
Q Consensus 795 g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~ 874 (1250)
+. ||||||||++||++|+.+|++|+|||||+|||+.+...+++.+++++++|.||++++|+.+ ++...+|++++
T Consensus 149 ~~-----LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 GE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp GG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred HH-----CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEE
T ss_conf 56-----9918888999999997592723243976569999999999999999978998999947699-99986999999
Q ss_pred EECCCEEEEECCC
Q ss_conf 3239589990889
Q 000860 875 MKRGGRVIYGGKL 887 (1250)
Q Consensus 875 l~~gg~~~~~g~~ 887 (1250)
|.+ |+++..|++
T Consensus 223 m~~-G~iv~~g~~ 234 (254)
T d1g6ha_ 223 MFN-GQIIAEGRG 234 (254)
T ss_dssp EET-TEEEEEEES
T ss_pred EEC-CEEEEEECH
T ss_conf 969-989999668
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=311.98 Aligned_cols=215 Identities=29% Similarity=0.440 Sum_probs=171.5
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 69999599999278321112544333412100389995773999996999958999998959999980689999979137
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++|+||+|+|+. ..+.+|+|+|+.+++||.+||+||||||||||+++|+|... ..+|+|.+||.++
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEECC-----------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCEEE
T ss_conf 9299999999089-----------99603742489984999999999999989999999973578--8888999999994
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH--HHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 81---1223328897479878989999999999986289999998889999999--99981-994322223469998767
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEE--VMSLV-ELDSLRHALVGSPGSFGL 802 (1250)
Q Consensus 729 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~--~~~~l-~l~~~~~~~~g~~~~~~l 802 (1250)
.. ..+++.++||+|++.+++ .|++||+.+.. ...+.++.....+. +.+.+ .+..-.++.++..+ ..|
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g-~~L 140 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQG-AGL 140 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTS-----TTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTT-TCC
T ss_pred CCCCHHHHHCEEEEEECCCCCCC-CCCCCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC-CCC
T ss_conf 40024655352889824465578-40003522357-----554388899999997557888763201344327878-866
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEE
Q ss_conf 97898999999999519967788399999999999999999999862898899980689889999620301532395899
Q 000860 803 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVI 882 (1250)
Q Consensus 803 SgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~ 882 (1250)
|||||||++|||+|+++|+|++||||||+||+.++..+++.++++. +++|+|+++|+++ ....+|+|++|.+ |+++
T Consensus 141 SGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G~Iv 216 (241)
T d2pmka1 141 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEK-GKIV 216 (241)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEEC-CEEE
T ss_conf 9889898754434441651355647765559899999999999985-8998999978899--9984999999989-9999
Q ss_pred EECCC
Q ss_conf 90889
Q 000860 883 YGGKL 887 (1250)
Q Consensus 883 ~~g~~ 887 (1250)
..|+.
T Consensus 217 ~~G~~ 221 (241)
T d2pmka1 217 EQGKH 221 (241)
T ss_dssp EEECH
T ss_pred EECCH
T ss_conf 98899
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=307.60 Aligned_cols=216 Identities=23% Similarity=0.351 Sum_probs=172.4
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 69999599999278321112544333412100389995773999996999958999998959999980689999979137
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++||+|+|+.. ..+.+|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.+||.++
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 69999989988999----------99976744389984998999999999849999999861437--8768998899853
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHH-----HHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 81---1223328897479878989999999999986289999998889999-----999999819943222234699987
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEF-----VEEVMSLVELDSLRHALVGSPGSF 800 (1250)
Q Consensus 729 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~-----v~~~~~~l~l~~~~~~~~g~~~~~ 800 (1250)
.. ..+++.++||+|++.+++ .|++|++.+.... .....+..+. ..+.++ .+..-.++.++.. ..
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-GS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-CS
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCC-CC
T ss_conf 11013788877654045650027-6346554542101----302788999999998999998--5612111367516-76
Q ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCC
Q ss_conf 67978989999999995199677883999999999999999999998628-98899980689889999620301532395
Q 000860 801 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 801 ~lSgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
.||||||||++|||+|+++|+|++|||||++||+.+...+++.++++.++ ++|+|+++|+++ ....+|+|++|.+ |
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~-G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG-G 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-T
T ss_pred CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEEEC-C
T ss_conf 689547048998604456870787167576568536899999999976506989999959799--9985999999989-9
Q ss_pred EEEEECCC
Q ss_conf 89990889
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
+++..|++
T Consensus 228 ~iv~~Gt~ 235 (251)
T d1jj7a_ 228 AIREGGTH 235 (251)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
T ss_conf 99998899
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=309.31 Aligned_cols=193 Identities=24% Similarity=0.397 Sum_probs=172.2
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 038999577399999699995899999895999998068999997913781-1223328897479878989999999999
Q 000860 680 NVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQ-STFARISGYVEQEDVHSPQVTIEESLWF 758 (1250)
Q Consensus 680 ~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~-~~~~~~~~~v~q~~~~~~~ltv~e~l~~ 758 (1250)
|+|+.++ +|+++|+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+|||+|++.++|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCC--CCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-97999997999809999999973999--89628999999988699899285225231443522015576665
Q ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 98628999999888999999999981994322223469998767978989999999995199677883999999999999
Q 000860 759 SANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 838 (1250)
Q Consensus 759 ~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~ 838 (1250)
.. ...++.+++++++++++.+||.+..+..+. .||||||||++|||||+.+|++++|||||+|||+.++.
T Consensus 94 ~l-----~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL-----RNVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC-----TTSCHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH-----CCCCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32-----336778899999999986383756657944-----48999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 999999998628-9889998068988999962030153239589990889
Q 000860 839 IVMRAVRNTVDT-GRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 839 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
.+++.++++.++ |.|||+++|++. ++...+|++++|.+ |+++..|++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999998743976999818999-99996999999989-999999069
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=314.05 Aligned_cols=210 Identities=27% Similarity=0.452 Sum_probs=169.7
Q ss_pred EEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 99995999992783211125443334121003899957739999969999589999989599999806899999791378
Q 000860 650 MTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKE 729 (1250)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~ 729 (1250)
++++||+|+|+. .+.+|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.+||.++.
T Consensus 2 le~knvsf~Y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYDD------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSSS------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECCC------------CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCEEEC
T ss_conf 799988998799------------9841422589985999999999999979999999999609--89877988998844
Q ss_pred C---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCCC
Q ss_conf 1---12233288974798789899999999999862899999988899999999998199-------4322223469998
Q 000860 730 Q---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVEL-------DSLRHALVGSPGS 799 (1250)
Q Consensus 730 ~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l-------~~~~~~~~g~~~~ 799 (1250)
. ..+++.++||+|++.+++. |++||+.+... ...+.++. .+..+..++ ....++.++..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDEDL----WQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHHHH----HHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCC----CCCCHHHH----HHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 24678887436797566545785-34543012445----55423567----7899999755542037421015236878-
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCC
Q ss_conf 76797898999999999519967788399999999999999999999862898899980689889999620301532395
Q 000860 800 FGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGG 879 (1250)
Q Consensus 800 ~~lSgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg 879 (1250)
..||||||||++|||+|+++|+|++|||||++||+.+...+++.++++. +++|+|+++|+++ ....+|++++|.+ |
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEEC-C
T ss_conf 9879999999999999852998999658865569889999988788871-7998999978799--9984999999989-9
Q ss_pred EEEEECCC
Q ss_conf 89990889
Q 000860 880 RVIYGGKL 887 (1250)
Q Consensus 880 ~~~~~g~~ 887 (1250)
+++..|+.
T Consensus 214 ~iv~~G~~ 221 (242)
T d1mv5a_ 214 QITGSGKH 221 (242)
T ss_dssp EECCCSCH
T ss_pred EEEEECCH
T ss_conf 99999999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=304.96 Aligned_cols=212 Identities=25% Similarity=0.373 Sum_probs=171.2
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 69999599999278321112544333412100389995773999996999958999998959999980689999979137
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++||+|+|+. +.+.+|+++|+.+++||++||+||||||||||+++|+|... ..+|+|.+||.++
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred EEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCCCC
T ss_conf 7999988999299-----------99763533289985999999999999859999999862168--8846898788012
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCC
Q ss_conf 81---1223328897479878989999999999986289999998889999999999819943-------2222346999
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~-------~~~~~~g~~~ 798 (1250)
.. ..+++.++||+|++.++. .|+++++.+.. +...+.++ ++++++..++.+ -.++.++..
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~~~----i~~a~~~~~l~~~i~~l~~gl~t~~~~~- 149 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR----TEEYSREQ----IEEAARMAYAMDFINKMDNGLDTIIGEN- 149 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT----TSCCCHHH----HHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred CHHHHHHHHHEEEEEEECCCCCC-CCHHHHHHHCC----CCCCCHHH----HHHHHHHHHHHHHHHHCCCCCHHHHCCC-
T ss_conf 11106654206879950254478-62024332057----22089999----9999999817999973554410143488-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECC
Q ss_conf 87679789899999999951996778839999999999999999999986289889998068988999962030153239
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
...||||||||++|||+|+++|+|++||||||+||+.+...+++.|+++. .++|+|+++|+++ ....+|+|++|.+
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v~vl~~- 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEIVVVED- 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEEC-
T ss_conf 89849999999999999954998899516444589889999999998752-2788999988799--9985999999989-
Q ss_pred CEEEEECCC
Q ss_conf 589990889
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|++
T Consensus 226 G~Iv~~G~~ 234 (253)
T d3b60a1 226 GIIVERGTH 234 (253)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=306.42 Aligned_cols=192 Identities=22% Similarity=0.348 Sum_probs=167.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCC-CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 99982799999689998981998999860149998892057433-11227865654455888988999999987128986
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~-~~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l~~~~~ 79 (1250)
+++|+||||||||||+++|+|..+| .+|+|.+||.++.... .++.+|||+|++.+++++||+||+.|++.+++.+.
T Consensus 34 ~~~liGpsGaGKSTLl~~i~Gl~~p---~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~ 110 (239)
T d1v43a3 34 FLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK 110 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--CCCH
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC---CCCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHCCCCH
T ss_conf 9999999998299999999758999---8787999164135477000158998003353422209999999998739999
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 42467676429998402699902578774310378765441999999819944455533787654476232014699998
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRisIA~a 159 (1250)
. +. ...++++|+.++|++..|..+. .||||||||++||||
T Consensus 111 ~-----------~~------------------------~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRvaiAra 150 (239)
T d1v43a3 111 D-----------EI------------------------DKRVRWAAELLQIEELLNRYPA-----QLSGGQRQRVAVARA 150 (239)
T ss_dssp H-----------HH------------------------HHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHHHHHHHHH
T ss_pred H-----------HH------------------------HHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHH
T ss_conf 9-----------99------------------------9999999987598556609954-----699999889999766
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 73498075641798560279899999999998770898999995189934782012468843980785548213999
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 160 L~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~~~l~~ 236 (1250)
|+.+|+|++|||||+|||+.++.++++.|+++.+..|.|+++++|. ..++.+++|+|++|.+|++++.|+++++.+
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd-~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 4049982430688666898999899999999987319807999489-999998699999998999999859999986
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=306.94 Aligned_cols=211 Identities=24% Similarity=0.410 Sum_probs=172.6
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 69999599999278321112544333412100389995773999996999958999998959999980689999979137
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|++|+|+. ..+.+|+|+|+.+++||++||+||||||||||+++|+|... ..+|+|.++|.++
T Consensus 16 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 82 (255)
T d2hyda1 16 RIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNI 82 (255)
T ss_dssp CEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEC
T ss_conf 7999988999599-----------99760644389983998999988999809999999971278--6300015399875
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCC
Q ss_conf 81---1223328897479878989999999999986289999998889999999999819943-------2222346999
Q 000860 729 EQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDS-------LRHALVGSPG 798 (1250)
Q Consensus 729 ~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~-------~~~~~~g~~~ 798 (1250)
.. ..+++.++||+|++.+++ .||+||+.|.. + ..++++ +.++++..++.+ -.++.++..
T Consensus 83 ~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~~~~----~~~al~~~~l~~~i~~lp~gl~t~i~~~- 151 (255)
T d2hyda1 83 KDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGER- 151 (255)
T ss_dssp GGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCGG-
T ss_pred CCCCHHHHHHEEEEEECCCCCCC-CCHHHHHHCCC----C-CCCHHH----HHHHHHHHCCHHHHHHCCCCCCCHHCCC-
T ss_conf 30788886341456510156899-87999985158----6-799999----9999999697999973624201033388-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECC
Q ss_conf 87679789899999999951996778839999999999999999999986289889998068988999962030153239
Q 000860 799 SFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRG 878 (1250)
Q Consensus 799 ~~~lSgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~g 878 (1250)
...||||||||++|||+|+++|+|++|||||++||+.+...+++.++++. .++|+|+++|+++ ....+|+|++|.+
T Consensus 152 g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l~~- 227 (255)
T d2hyda1 152 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIEN- 227 (255)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEEC-
T ss_conf 89849999999999999855998999837654479779999999999875-3888999968999--9985999999989-
Q ss_pred CEEEEECCC
Q ss_conf 589990889
Q 000860 879 GRVIYGGKL 887 (1250)
Q Consensus 879 g~~~~~g~~ 887 (1250)
|+++..|+.
T Consensus 228 G~iv~~G~~ 236 (255)
T d2hyda1 228 GHIVETGTH 236 (255)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=306.09 Aligned_cols=192 Identities=25% Similarity=0.374 Sum_probs=169.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCC-CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 99982799999689998981998999860149998892057433-11227865654455888988999999987128986
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~-~~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l~~~~~ 79 (1250)
+++|+||||||||||+++|+|..+| .+|+|.+||.++.... .++.+|||+|++.+++++||+||+.|+..+++...
T Consensus 28 i~~liGpsGsGKSTLl~~i~Gl~~p---~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~ 104 (232)
T d2awna2 28 FVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK 104 (232)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEESSSCCTTSCGGGTCEEEECSSCCC---------------------
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC---CCCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCH
T ss_conf 9999989998299999999658788---8888999999778886444322234334202643337889789998759988
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 42467676429998402699902578774310378765441999999819944455533787654476232014699998
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRisIA~a 159 (1250)
.. .+..++++|+.++|++..|..+.+ ||||||||++||||
T Consensus 105 ~~-----------------------------------~~~~v~~~l~~~~l~~~~~~~~~~-----LSGGqkQRvaiAra 144 (232)
T d2awna2 105 EV-----------------------------------INQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRT 144 (232)
T ss_dssp CH-----------------------------------HHHHHHHHHHHC--------------------------CHHHH
T ss_pred HH-----------------------------------HHHHHHHHHHHCCCHHHHHCCHHH-----CCHHHHHHHHHHHH
T ss_conf 99-----------------------------------999999999757886566489656-----99999999999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 73498075641798560279899999999998770898999995189934782012468843980785548213999
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 160 L~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~~~l~~ 236 (1250)
|+.+|++++|||||+|||+.++.++++.|+++.++.|.|+|+++|. ..++..++|++++|.+|++++.|++.++.+
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd-~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 7039988997588878898899899999999987429879999489-999999699999997999999808999973
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=301.45 Aligned_cols=192 Identities=24% Similarity=0.353 Sum_probs=167.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCC-------CCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99982799999689998981998999860149998892057433-------11227865654455888988999999987
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-------VQRASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~-------~~~~~~yv~Q~d~~~~~lTVrEnL~F~a~ 73 (1250)
+++|+||||||||||+++|+|...| .+|+|.++|.++.... .++.++||+|++.+++++||+||+.|+..
T Consensus 31 ~~~liG~sGaGKSTll~~i~gl~~p---~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~ 107 (240)
T d1g2912 31 FMILLGPSGCGKTTTLRMIAGLEEP---SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC---CCCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHH
T ss_conf 9999999998099999999648788---9898999999803566444245322551200221222310116676330687
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 12898642467676429998402699902578774310378765441999999819944455533787654476232014
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKR 153 (1250)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqR 153 (1250)
+++.+.. +. +.+++++|+.++|++..+..+++ ||||||||
T Consensus 108 ~~~~~~~-----------e~------------------------~~~v~~~l~~~~l~~~~~~~p~~-----LSGGqkQR 147 (240)
T d1g2912 108 LRKVPRQ-----------EI------------------------DQRVREVAELLGLTELLNRKPRE-----LSGGQRQR 147 (240)
T ss_dssp HTTCCHH-----------HH------------------------HHHHHHHHHHHTCGGGTTCCGGG-----SCHHHHHH
T ss_pred HCCCCHH-----------HH------------------------HHHHHHHHHHCCCHHHHCCCHHH-----CCHHHHHH
T ss_conf 7299989-----------99------------------------99999999875996676299334-----99999999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHH
Q ss_conf 69999873498075641798560279899999999998770898999995189934782012468843980785548213
Q 000860 154 VTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAE 233 (1250)
Q Consensus 154 isIA~aL~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~~~ 233 (1250)
++|||||+.+|+++++||||+|||+.++.++++.|+++.+..|.|+|+++|. ..++...+|+|++|.+|++++.|++++
T Consensus 148 v~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd-~~~~~~~~drv~vm~~G~iv~~G~~~e 226 (240)
T d1g2912 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-QVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (240)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC-HHHHHHHCCEEEEEECCEEEEECCHHH
T ss_conf 9999998269988982588765698999899999999986369889999599-999999699999998999999859999
Q ss_pred HHH
Q ss_conf 999
Q 000860 234 VLE 236 (1250)
Q Consensus 234 l~~ 236 (1250)
+..
T Consensus 227 l~~ 229 (240)
T d1g2912 227 VYD 229 (240)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 982
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=303.47 Aligned_cols=190 Identities=23% Similarity=0.369 Sum_probs=165.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCC-CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 99982799999689998981998999860149998892057433-11227865654455888988999999987128986
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~-~~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l~~~~~ 79 (1250)
+++|+||||||||||+++|+|..+| .+|+|.+||.++.... .++.+|||+|++.+++++||+|||.|+ ++....
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~~p---~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~--l~~~~~ 100 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG--LRNVER 100 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTT--CTTSCH
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC---CCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHH--HCCCCH
T ss_conf 9999979998099999999739998---96289999999886998992852252314435220155766653--233677
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 42467676429998402699902578774310378765441999999819944455533787654476232014699998
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRisIA~a 159 (1250)
.+. +.+++++++.+||.+..+..... ||||||||++||||
T Consensus 101 -----------~~~------------------------~~~v~~~l~~~gl~~~~~~~~~~-----LSGG~kQRvaiAra 140 (240)
T d2onka1 101 -----------VER------------------------DRRVREMAEKLGIAHLLDRKPAR-----LSGGERQRVALARA 140 (240)
T ss_dssp -----------HHH------------------------HHHHHHHHHTTTCTTTTTCCGGG-----SCHHHHHHHHHHHH
T ss_pred -----------HHH------------------------HHHHHHHHHHCCCHHHHHCCHHH-----CCHHHHHHHHHHHH
T ss_conf -----------889------------------------99999999863837566579444-----89999899999877
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 73498075641798560279899999999998770898999995189934782012468843980785548213999
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 160 L~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~~~l~~ 236 (1250)
++.+|++++|||||+|||+.++.++++.|+++.+..|.|+|+++|+ ..++...+|++++|++|++++.|+.+++.+
T Consensus 141 l~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd-~~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD-LIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEEECHHHHHC
T ss_conf 7516770675286555887999999999999987439769998189-999999699999998999999906999832
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=302.93 Aligned_cols=189 Identities=24% Similarity=0.339 Sum_probs=167.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCC-CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 99982799999689998981998999860149998892057433-11227865654455888988999999987128986
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ-VQRASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~-~~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l~~~~~ 79 (1250)
+++|+||||||||||+++|+|..+| .+|+|.++|.++.... .++.+|||+|+..+++++||+||+.|+..+++...
T Consensus 28 ~~~liGpsGaGKSTll~~l~Gl~~p---~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~ 104 (229)
T d3d31a2 28 YFVILGPTGAGKTLFLELIAGFHVP---DSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD 104 (229)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCC---SEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC---CCCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCH
T ss_conf 9999989998299999999647688---8788999567346521657405615121111746657788888776405538
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 42467676429998402699902578774310378765441999999819944455533787654476232014699998
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRisIA~a 159 (1250)
. ..++++++.++|++..|..+++ ||||||||++||||
T Consensus 105 ~--------------------------------------~~~~~~l~~~~l~~~~~~~~~~-----LSGG~~QRvaiAra 141 (229)
T d3d31a2 105 P--------------------------------------KRVLDTARDLKIEHLLDRNPLT-----LSGGEQQRVALARA 141 (229)
T ss_dssp H--------------------------------------HHHHHHHHHTTCTTTTTSCGGG-----SCHHHHHHHHHHHH
T ss_pred H--------------------------------------HHHHHHHHHHCCHHHHHCCHHH-----CCHHHHCCHHHHHH
T ss_conf 9--------------------------------------9999999982565557589554-----79998401403043
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 73498075641798560279899999999998770898999995189934782012468843980785548213999
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 160 L~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~~~l~~ 236 (1250)
|+.+|++++|||||+|||+.++.++++.|+++.++.|.|+|+++|. ..++..++|+|++|.+|++++.|+++++.+
T Consensus 142 L~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd-~~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 142 LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHD-QTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp TTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESC-HHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred HHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC-HHHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 4436771443478767998999999999999986479689997499-999999699999997999999869999986
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=297.63 Aligned_cols=191 Identities=25% Similarity=0.321 Sum_probs=166.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCC------CCCEEEEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99982799999689998981998999860149998892057433------112278656544558889889999999871
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ------VQRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~------~~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l 74 (1250)
+++|+||||||||||+++|+|..+| .+|+|.++|.++.... .|+.++||+|+..+++.+||+||+.|+..+
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~Gl~~p---~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~ 109 (240)
T d3dhwc1 33 IYGVIGASGAGKSTLIRCVNLLERP---TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL 109 (240)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCC---SEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCC---CCCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9999899989888999987588636---6773288676852087555115541664302252227996499999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 28986424676764299984026999025787743103787654419999998199444555337876544762320146
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRi 154 (1250)
.+..... ...+++++|+.+||++..|...++ ||||||||+
T Consensus 110 ~~~~~~~-----------------------------------~~~~v~~~L~~vgL~~~~~~~~~~-----LSGG~~QRv 149 (240)
T d3dhwc1 110 DNTPKDE-----------------------------------VKRRVTELLSLVGLGDKHDSYPSN-----LSGGQKQRV 149 (240)
T ss_dssp TTCCTTH-----------------------------------HHHHHHHHHHHHSTTTTTSSCBSC-----CCHHHHHHH
T ss_pred CCCCHHH-----------------------------------HHHHHHHHHHHCCCCHHHHCCHHH-----CCHHHHHHH
T ss_conf 4999899-----------------------------------999999999976990355489434-----999999899
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHH
Q ss_conf 99998734980756417985602798999999999987708989999951899347820124688439807855482139
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 155 sIA~aL~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~~~l 234 (1250)
+|||||+.+|+++++||||+|||+.++.++++.|+++.++.|.|+|+++|. ..++...+|++++|.+|++++.|+++++
T Consensus 150 aiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd-l~~~~~~~dri~vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE-MDVVKRICDCVAVISNGELIEQDTVSEV 228 (240)
T ss_dssp HHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSC-HHHHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC-HHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 986401058986874465565898885679999999986469789998389-9999986999999979999998799999
Q ss_pred H
Q ss_conf 9
Q 000860 235 L 235 (1250)
Q Consensus 235 ~ 235 (1250)
.
T Consensus 229 ~ 229 (240)
T d3dhwc1 229 F 229 (240)
T ss_dssp T
T ss_pred H
T ss_conf 7
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.4e-45 Score=297.89 Aligned_cols=192 Identities=22% Similarity=0.292 Sum_probs=165.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCC------CCCEEEEECCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 99982799999689998981998999860149998892057433------112278656544558889889999999871
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ------VQRASAYIGQTDNHIAELTVRETLDFAARC 74 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~------~~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l 74 (1250)
+++|+||||||||||+++|+|..+| .+|+|.++|.++.... .++.++||+|+..+++++||+|||.|+...
T Consensus 33 ~~~iiG~sGsGKSTll~~i~gl~~p---~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~ 109 (242)
T d1oxxk2 33 RFGILGPSGAGKTTFMRIIAGLDVP---STGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTN 109 (242)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCC---SEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC---CCCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 9999989998099999999758688---8745999999951373111531204514773043346666577776655676
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 28986424676764299984026999025787743103787654419999998199444555337876544762320146
Q 000860 75 QGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRV 154 (1250)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRi 154 (1250)
++.+.. + .+..++++|+.+||++..|...++ ||||||||+
T Consensus 110 ~~~~~~-----------~------------------------~~~~v~~~l~~~gL~~~~~~~p~~-----LSGGqkQRv 149 (242)
T d1oxxk2 110 MKMSKE-----------E------------------------IRKRVEEVAKILDIHHVLNHFPRE-----LSGAQQQRV 149 (242)
T ss_dssp SSCCHH-----------H------------------------HHHHHHHHHHHTTCGGGTTSCGGG-----SCHHHHHHH
T ss_pred HCCCHH-----------H------------------------HHHHHHHHHHHCCHHHHHHCCHHH-----CCHHHHHHH
T ss_conf 137999-----------9------------------------999999998665917666489545-----999998589
Q ss_pred HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHH
Q ss_conf 99998734980756417985602798999999999987708989999951899347820124688439807855482139
Q 000860 155 TTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEV 234 (1250)
Q Consensus 155 sIA~aL~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~~~l 234 (1250)
+|||||+.+|+++++||||+|||+.++.++++.|+++.++.|.|+|+++|. ..++.+.+|++++|.+|++++.|+++++
T Consensus 150 aiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd-~~~~~~~~dri~vm~~G~iv~~g~~~el 228 (242)
T d1oxxk2 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD-PADIFAIADRVGVLVKGKLVQVGKPEDL 228 (242)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEECCHHHH
T ss_conf 987577604661454478667998998899899999986359879999799-9999996999999989999998699999
Q ss_pred HH
Q ss_conf 99
Q 000860 235 LE 236 (1250)
Q Consensus 235 ~~ 236 (1250)
..
T Consensus 229 ~~ 230 (242)
T d1oxxk2 229 YD 230 (242)
T ss_dssp HH
T ss_pred HH
T ss_conf 86
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-45 Score=295.64 Aligned_cols=196 Identities=21% Similarity=0.340 Sum_probs=157.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 99982799999689998981998999860149998892057433---112278656544558889889999999871289
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ---VQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~---~~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l~~~ 77 (1250)
+++|+||||||||||+++|+|.++|. +|+|.+||.++.... .|+.++||+|++.++ +.||+||+.|+...+
T Consensus 42 ~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~g~~~~-- 115 (251)
T d1jj7a_ 42 VTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF-GRSLQENIAYGLTQK-- 115 (251)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC-SSBHHHHHHCSCSSC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHHHHCCC--
T ss_conf 99999999984999999986143787---689988998531101378887765404565002-763465545421013--
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 86424676764299984026999025787743103787654419999998199444555337876544762320146999
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRisIA 157 (1250)
....+. ..++++. ...-...+|++..+|.++..+ ..||||||||++||
T Consensus 116 -~~~~~~---~~~~~~~---------------------------~~~~~i~~l~~g~~~~i~~~~-~~LSGGqkQRvaiA 163 (251)
T d1jj7a_ 116 -PTMEEI---TAAAVKS---------------------------GAHSFISGLPQGYDTEVDEAG-SQLSGGQRQAVALA 163 (251)
T ss_dssp -CCHHHH---HHHHHHH---------------------------TCHHHHHTSTTGGGCBCCSSC-SSSCHHHHHHHHHH
T ss_pred -CHHHHH---HHHHHHH---------------------------HHHHHHHHCCCCCHHHHHCCC-CCCCHHHCEEEEEE
T ss_conf -027889---9999999---------------------------899999856121113675167-66895470489986
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 9873498075641798560279899999999998770898999995189934782012468843980785548213999
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 158 ~aL~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~~~l~~ 236 (1250)
||++.+|+|++||||||+||+.++.++++.|+++.++.++|+|+++|+ .+.++.+|+|++|++|++++.|+++++.+
T Consensus 164 Ral~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~--l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 164 RALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSC--HHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred ECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC--HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 044568707871675765685368999999999765069899999597--99998599999998999999889999985
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7e-45 Score=293.26 Aligned_cols=193 Identities=22% Similarity=0.334 Sum_probs=153.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 99982799999689998981998999860149998892057433---112278656544558889889999999871289
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ---VQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~---~~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l~~~ 77 (1250)
.++|+||||||||||+++|+|.++| .+|+|.+||.++.... .|+.++||+|++. +.+.||+|||.|+..
T Consensus 31 ~vaIvG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~-lf~~Ti~eNi~~~~~---- 102 (241)
T d2pmka1 31 VIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGHDLALADPNWLRRQVGVVLQDNV-LLNRSIIDNISLANP---- 102 (241)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTSCHHHHHHHEEEECSSCC-CTTSBHHHHHCTTST----
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC---CCCEEEECCEEECCCCHHHHHCEEEEEECCCC-CCCCCCCCCCCCCCC----
T ss_conf 9999999999899999999735788---88899999999440024655352889824465-578400035223575----
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 86424676764299984026999025787743103787654419999998199444555337876544762320146999
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRisIA 157 (1250)
.....+... +++... ... ....++...+|.+|..+ ..|||||||||+||
T Consensus 103 ~~~~~~~~~---~~~~~~-------------------------~~~--~i~~~~~~~~t~i~~~g-~~LSGGq~QRvalA 151 (241)
T d2pmka1 103 GMSVEKVIY---AAKLAG-------------------------AHD--FISELREGYNTIVGEQG-AGLSGGQRQRIAIA 151 (241)
T ss_dssp TCCHHHHHH---HHHHHT-------------------------CHH--HHTTSTTGGGSBCSTTT-TCCCHHHHHHHHHH
T ss_pred CCCHHHHHH---HHHHHH-------------------------HHH--HHHHHHCCHHHHCCCCC-CCCCHHHHHHHHHH
T ss_conf 543888999---999975-------------------------578--88763201344327878-86698898987544
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 9873498075641798560279899999999998770898999995189934782012468843980785548213999
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 158 ~aL~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~~~l~~ 236 (1250)
||++.+|+|++||||||+||+.++.+|++.|+++.+ ++|+|+++|++ +.++.+|+|++|++|++++.|+++++..
T Consensus 152 Ral~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 152 RALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRL--STVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp HHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSG--GGGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEECCH--HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 344416513556477655598999999999999858--99899997889--9998499999998999999889999982
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.6e-44 Score=287.74 Aligned_cols=189 Identities=19% Similarity=0.241 Sum_probs=158.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCC-------CCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 999827999996899989819989998601499988920574331-------1227865654455888988999999987
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV-------QRASAYIGQTDNHIAELTVRETLDFAAR 73 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~~-------~~~~~yv~Q~d~~~~~lTVrEnL~F~a~ 73 (1250)
+++|+||||||||||+++|+|..+| .+|+|.++|.++..... ++.++||+|++.+++++||+||+.|+..
T Consensus 33 ~~~iiG~sGsGKSTLl~~i~gl~~p---~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~ 109 (230)
T d1l2ta_ 33 FVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI 109 (230)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHCCCCCCC---CCCEEEECCEECCCCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHH
T ss_conf 9999889999821655750688777---7662699999857688555123125557788041241768668887757888
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCH
Q ss_conf 12898642467676429998402699902578774310378765441999999819944-45553378765447623201
Q 000860 74 CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDL-CSDTVVGSEMLRGVSGGQKK 152 (1250)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~-~~~t~VG~~~~~~LSGGQKq 152 (1250)
.+...... ..+. ...+.+.|+.++|.+ ..+..+. .|||||||
T Consensus 110 ~~~~~~~~--------~~~~------------------------~~~~~~~l~~~~L~~~~~~~~p~-----~LSGGqkQ 152 (230)
T d1l2ta_ 110 FKYRGAMS--------GEER------------------------RKRALECLKMAELEERFANHKPN-----QLSGGQQQ 152 (230)
T ss_dssp TCCSSCCC--------HHHH------------------------HHHHHHHHHHTTCCGGGTTCCGG-----GSCHHHHH
T ss_pred HHCCCCCC--------HHHH------------------------HHHHHHHHHHHCHHHHHHCCCHH-----HCCHHHHH
T ss_conf 72247899--------9999------------------------99999988762423455348802-----38999999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCH
Q ss_conf 4699998734980756417985602798999999999987708989999951899347820124688439807855482
Q 000860 153 RVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPR 231 (1250)
Q Consensus 153 RisIA~aL~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~ 231 (1250)
|++|||||+.+|+++++||||||||+.++.++++.|+++.+..|.|+|+++|.. +..+.+|++++|.+|++++.|+.
T Consensus 153 RvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 153 RVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH--HHHHHCCEEEEEECCEEEEECCC
T ss_conf 999875652278889946876546989999999999999984399999987888--99986998999989999995257
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.1e-44 Score=292.08 Aligned_cols=193 Identities=23% Similarity=0.366 Sum_probs=154.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 99982799999689998981998999860149998892057433---112278656544558889889999999871289
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ---VQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~---~~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l~~~ 77 (1250)
.++|+||||||||||+++|+|.++| .+|+|.++|.++.... .|+.++||+|++.++ +.||+|||.|+..
T Consensus 46 ~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~~---- 117 (255)
T d2hyda1 46 TVAFVGMSGGGKSTLINLIPRFYDV---TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGRP---- 117 (255)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSCC---SEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGCS----
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC---CCCCCCCCCEECCCCCHHHHHHEEEEEECCCCCC-CCCHHHHHHCCCC----
T ss_conf 9999889998099999999712786---3000153998753078888634145651015689-9879999851586----
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 86424676764299984026999025787743103787654419999998199444555337876544762320146999
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRisIA 157 (1250)
...+.+.. .+++... ..+. ...|+++.+|.+|+.+ .+||||||||++||
T Consensus 118 ~~~~~~~~---~al~~~~------------------------l~~~---i~~lp~gl~t~i~~~g-~~LSgGq~QRi~iA 166 (255)
T d2hyda1 118 TATDEEVV---EAAKMAN------------------------AHDF---IMNLPQGYDTEVGERG-VKLSGGQKQRLSIA 166 (255)
T ss_dssp SCCHHHHH---HHHHHTT------------------------CHHH---HHTSTTGGGCBCCGGG-TTSCHHHHHHHHHH
T ss_pred CCCHHHHH---HHHHHHC------------------------CHHH---HHHCCCCCCCHHCCCC-CCCCHHHHHHHHHH
T ss_conf 79999999---9999969------------------------7999---9736242010333888-98499999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 9873498075641798560279899999999998770898999995189934782012468843980785548213999
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 158 ~aL~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~~~l~~ 236 (1250)
||++.+|+|++||||||+||+.++..|++.|+.+.+ ++|+|+++|+ .+.+..+|+|++|++|++++.|+++++.+
T Consensus 167 Ral~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~--~~~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 167 RIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHR--LSTITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSS--GGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEECC--HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 998559989998376544797799999999998753--8889999689--99998599999998999999889999986
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.1e-43 Score=285.80 Aligned_cols=193 Identities=22% Similarity=0.278 Sum_probs=167.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCC--CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 9998279999968999898199899986014999889205743--31122786565445588898899999998712898
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF--QVQRASAYIGQTDNHIAELTVRETLDFAARCQGAN 78 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~--~~~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l~~~~ 78 (1250)
+++|+||||||||||+++|+|..+| .+|+|.++|.++... ..++.++||||++.+++++|++||+.|.+.+.+..
T Consensus 30 i~glvG~nGaGKSTLl~~l~G~~~p---~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~ 106 (238)
T d1vpla_ 30 IFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS 106 (238)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC---CCCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 9999999999999999999669887---8887999867244683988721867500154687866778889899861799
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 64246767642999840269990257877431037876544199999981994445553378765447623201469999
Q 000860 79 DSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGE 158 (1250)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRisIA~ 158 (1250)
... . ...++.+++.++|.+..+.++++ ||||||||++|||
T Consensus 107 ~~~---------~--------------------------~~~~~~~l~~~~l~~~~~~~~~~-----lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 107 SSE---------I--------------------------EEMVERATEIAGLGEKIKDRVST-----YSKGMVRKLLIAR 146 (238)
T ss_dssp HHH---------H--------------------------HHHHHHHHHHHCCGGGGGSBGGG-----CCHHHHHHHHHHH
T ss_pred HHH---------H--------------------------HHHHHHHHHHCCCHHHHHHHHHH-----CCHHHHHHHHHHH
T ss_conf 899---------9--------------------------99999999867978888504533-----7998989999999
Q ss_pred HHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHHHH
Q ss_conf 87349807564179856027989999999999877089899999518993478201246884398078554821399998
Q 000860 159 MIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLEFF 238 (1250)
Q Consensus 159 aL~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~~~l~~~f 238 (1250)
|++.+|++++|||||+|||+.++.++++.|+++.+ .|+|+++++|+ ..++...+|+|++|.+|++++.|+++++.+.+
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~~tH~-l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHN-MLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECC-HHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEECCHHHHHHCC
T ss_conf 98659998873379889798999999999999996-59989999598-99999969999999899999992899998652
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-43 Score=285.27 Aligned_cols=194 Identities=24% Similarity=0.372 Sum_probs=153.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 99982799999689998981998999860149998892057433---112278656544558889889999999871289
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ---VQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~---~~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l~~~ 77 (1250)
.++|+||||||||||+++|+|.++|. +|+|.+||.++.... .|+.++||+|++. +.+.|+++|+.|+..-
T Consensus 43 ~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-l~~~ti~~n~~~~~~~--- 115 (253)
T d3b60a1 43 TVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVH-LFNDTVANNIAYARTE--- 115 (253)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCC-CCSSBHHHHHHTTTTS---
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECCC-CCCCCHHHHHHHCCCC---
T ss_conf 99999999985999999986216888---4689878801211106654206879950254-4786202433205722---
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 86424676764299984026999025787743103787654419999998199444555337876544762320146999
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRisIA 157 (1250)
.....+ +....+.. . ....+ -.|++..+|.+|+.+ .+|||||||||+||
T Consensus 116 ~~~~~~----i~~a~~~~-----------------------~-l~~~i--~~l~~gl~t~~~~~~-~~LSGGqkQRvaiA 164 (253)
T d3b60a1 116 EYSREQ----IEEAARMA-----------------------Y-AMDFI--NKMDNGLDTIIGENG-VLLSGGQRQRIAIA 164 (253)
T ss_dssp CCCHHH----HHHHHHTT-----------------------T-CHHHH--HHSTTGGGSBCCTTS-CSSCHHHHHHHHHH
T ss_pred CCCHHH----HHHHHHHH-----------------------H-HHHHH--HHCCCCCHHHHCCCC-CCCCHHHHHHHHHH
T ss_conf 089999----99999998-----------------------1-79999--735544101434888-98499999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 9873498075641798560279899999999998770898999995189934782012468843980785548213999
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 158 ~aL~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~~~l~~ 236 (1250)
||++.+|+|++||||||+||+.++..|++.|+++.+ ++|+|+++|. .+....+|+|++|.+|++++.|+++++.+
T Consensus 165 Ral~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~--l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 165 RALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHR--LSTIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp HHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSC--GGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECC--HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 999549988995164445898899999999987522--7889999887--99998599999998999999889999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.8e-45 Score=295.58 Aligned_cols=194 Identities=23% Similarity=0.327 Sum_probs=153.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCC---CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 9998279999968999898199899986014999889205743---3112278656544558889889999999871289
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF---QVQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~---~~~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l~~~ 77 (1250)
+++|+||||||||||+++|+|.++|. +|+|.+||.++... ..|+.++||+|++.+++ .||+||+.++....
T Consensus 30 ~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~~~~~~-- 103 (242)
T d1mv5a_ 30 IIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGD-- 103 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTSC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCCCCC-CCHHHHEECCCCCC--
T ss_conf 99999999997999999999960989---8779889988442467888743679756654578-53454301244555--
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 86424676764299984026999025787743103787654419999998199444555337876544762320146999
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRisIA 157 (1250)
....... ..++... . . -....+++..+|.+|+.+. +|||||||||+||
T Consensus 104 -~~~~~~~---~~~~~~~-~---------------~-----------~~~~~~~~~~~~~i~~~g~-~LSGGqkQRv~iA 151 (242)
T d1mv5a_ 104 -YTDEDLW---QVLDLAF-A---------------R-----------SFVENMPDQLNTEVGERGV-KISGGQRQRLAIA 151 (242)
T ss_dssp -SCHHHHH---HHHHHHT-C---------------T-----------TTTTSSTTGGGCEESTTSB-CCCHHHHHHHHHH
T ss_pred -CCHHHHH---HHHHHHH-H---------------H-----------HHHCCCCCCCCCCCCCCCC-CCCHHHHHHHHHH
T ss_conf -4235677---8999997-5---------------5-----------5420374210152368789-8799999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 9873498075641798560279899999999998770898999995189934782012468843980785548213999
Q 000860 158 EMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 158 ~aL~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~~~l~~ 236 (1250)
||++.+|+|++||||||+||+.++.++++.|+++.+ ++|+|+++|+ .+....+|+|++|++|++++.|+++++.+
T Consensus 152 Ral~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~--l~~~~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 152 RAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHR--LSTIVDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp HHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCS--HHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECC--HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 998529989996588655698899999887888717--9989999787--99998499999998999999999999986
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.7e-43 Score=284.77 Aligned_cols=190 Identities=23% Similarity=0.389 Sum_probs=157.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCC----CCEEEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 999827999996899989819989998601499988920574331----1227865654455888988999999987128
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV----QRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~~----~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l~~ 76 (1250)
+++|+||||||||||+++|+|..+| .+|+|.++|.++..... +..++|++|+..+++++||+||+.+++....
T Consensus 34 i~~liGpnGaGKSTl~~~i~Gl~~p---~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~ 110 (240)
T d1ji0a_ 34 IVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK 110 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC---CCCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 9999999998599999999678888---8038984244344660888887423556765545776369999998887327
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 9864246767642999840269990257877431037876544199999981-994445553378765447623201469
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVL-GLDLCSDTVVGSEMLRGVSGGQKKRVT 155 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~l-gL~~~~~t~VG~~~~~~LSGGQKqRis 155 (1250)
.... . +..++.++..+ +|++..+..+++ ||||||||++
T Consensus 111 ~~~~----------~--------------------------~~~~~~~~~~~~~l~~~~~~~~~~-----LSGG~~Qrv~ 149 (240)
T d1ji0a_ 111 DKEG----------I--------------------------KRDLEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLA 149 (240)
T ss_dssp CSSH----------H--------------------------HHHHHHHHHHCHHHHTTTTSBSSS-----SCHHHHHHHH
T ss_pred CHHH----------H--------------------------HHHHHHHHHHHHCHHHHHHCCHHH-----CCHHHHHHHH
T ss_conf 8889----------9--------------------------999999998741768887585433-----8999999999
Q ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHH
Q ss_conf 99987349807564179856027989999999999877089899999518993478201246884398078554821399
Q 000860 156 TGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVL 235 (1250)
Q Consensus 156 IA~aL~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~~~l~ 235 (1250)
||||++.+|++++|||||+|||+.++.++++.|+++.+ .|.|+++++|. ..++.+.+|++++|.+|++++.|+++++.
T Consensus 150 iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~~tH~-l~~~~~~~drv~vl~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 150 IGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQN-ALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESC-HHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEECCHHHHH
T ss_conf 99999829987400398867999999999999999996-89989999588-99999969999999899999984899984
Q ss_pred H
Q ss_conf 9
Q 000860 236 E 236 (1250)
Q Consensus 236 ~ 236 (1250)
+
T Consensus 228 ~ 228 (240)
T d1ji0a_ 228 D 228 (240)
T ss_dssp T
T ss_pred C
T ss_conf 2
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.3e-43 Score=283.93 Aligned_cols=204 Identities=25% Similarity=0.350 Sum_probs=164.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCC----CCEEEEECCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 999827999996899989819989998601499988920574331----1227865654455888988999999987128
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQV----QRASAYIGQTDNHIAELTVRETLDFAARCQG 76 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~~----~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l~~ 76 (1250)
+++|+||||||||||+++|+|..+| .+|+|.++|.++..... +..++|++|+..+++++||.||+.+++..+.
T Consensus 32 i~~liG~nGaGKSTLl~~i~Gl~~p---~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~ 108 (254)
T d1g6ha_ 32 VTLIIGPNGSGKSTLINVITGFLKA---DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPG 108 (254)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC---CCCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCC
T ss_conf 9999999998499999999779768---8737999999664056999998338725776424788742321430133303
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 98642467676429998402699902578774310378765441999999819944455533787654476232014699
Q 000860 77 ANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTT 156 (1250)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRisI 156 (1250)
.... ........ .+ ..+.....++.+++.+++++..|..+++ ||||||||++|
T Consensus 109 ~~~~--------~~~~~~~~-~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG~~Qrv~i 161 (254)
T d1g6ha_ 109 ESPL--------NSLFYKKW-IP-------------KEEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEI 161 (254)
T ss_dssp SCHH--------HHHHHCSS-CC-------------CCHHHHHHHHHHHHHTTCGGGTTSBGGG-----SCHHHHHHHHH
T ss_pred CCCH--------HHHHHHCC-CC-------------CHHHHHHHHHHHHHHCCCCHHCCCCHHH-----CCCHHHHHHHH
T ss_conf 4504--------56654213-53-------------2899999999998761963020595356-----99188889999
Q ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 99873498075641798560279899999999998770898999995189934782012468843980785548213999
Q 000860 157 GEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 157 A~aL~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~~~l~~ 236 (1250)
||||+.+|++++|||||+|||+.++.++++.|+++.. .|.|++++.|. ..++.+.+|+|++|.+|++++.|+.+++.+
T Consensus 162 AraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~vsHd-l~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 162 GRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHR-LDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSC-CSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred HHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEEECHHHHHH
T ss_conf 9999759272324397656999999999999999997-89989999476-999998699999996998999966899865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7e-43 Score=280.90 Aligned_cols=205 Identities=22% Similarity=0.384 Sum_probs=172.0
Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 06999959999927832111254433341210038999577399999699995899999895999998068999997913
Q 000860 648 LTMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 727 (1250)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~ 727 (1250)
+.++.+|++. ...|+++|+.+++||++||+||||||||||+++|+|..+ .+|+|.++|.+
T Consensus 2 ~il~~~dv~~-----------------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~ 61 (231)
T d1l7vc_ 2 IVMQLQDVAE-----------------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQP 61 (231)
T ss_dssp EEEEEEEECC-----------------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSB
T ss_pred EEEEEECCCC-----------------CCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEE
T ss_conf 5999987415-----------------715558888994898999998999809999999948879---95599999999
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 781---12233288974798789899999999999862899999988899999999998199432222346999876797
Q 000860 728 KEQ---STFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLST 804 (1250)
Q Consensus 728 ~~~---~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~~~~~~~g~~~~~~lSg 804 (1250)
... ...+...+|++|+.......++.+.+.+... +..+.+.++++++.+++.+..+..+. .|||
T Consensus 62 i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSg 128 (231)
T d1l7vc_ 62 LEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDDKLGRSTN-----QLSG 128 (231)
T ss_dssp GGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCS--------CTTCHHHHHHHHHHTTCTTTTTSBGG-----GCCH
T ss_pred CCCCCHHHHHHHCEEEECCCCCCCCCCHHHHHHHCCC--------HHHHHHHHHHHHHHCCCHHHHCCCHH-----HCCH
T ss_conf 9869989998640245121357744209887641001--------46689999999986598767676844-----5699
Q ss_pred HHHHHHHHHHHHHH-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEEC
Q ss_conf 89899999999951-------99677883999999999999999999998628988999806898899996203015323
Q 000860 805 EQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 805 Gqr~r~~ia~~l~~-------~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
|||||++||++|+. +|+|++|||||+|||+.+...+.+.+++++++|.|||+++|+++ ++...+|++++|.+
T Consensus 129 G~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~ 207 (231)
T d1l7vc_ 129 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKG 207 (231)
T ss_dssp HHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEET
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC
T ss_conf 88999999999985171338998899971877778989999999999999867999999967799-99997999999979
Q ss_pred CCEEEEECCC
Q ss_conf 9589990889
Q 000860 878 GGRVIYGGKL 887 (1250)
Q Consensus 878 gg~~~~~g~~ 887 (1250)
|++++.|++
T Consensus 208 -G~iv~~G~~ 216 (231)
T d1l7vc_ 208 -GKMLASGRR 216 (231)
T ss_dssp -TEECCCSBH
T ss_pred -CEEEEECCH
T ss_conf -989998899
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.6e-42 Score=277.31 Aligned_cols=191 Identities=20% Similarity=0.248 Sum_probs=158.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCC----------------CCCCEEEEECCCCCCCCCCCH
Q ss_conf 9998279999968999898199899986014999889205743----------------311227865654455888988
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEF----------------QVQRASAYIGQTDNHIAELTV 64 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~----------------~~~~~~~yv~Q~d~~~~~lTV 64 (1250)
+++|+||||||||||+++|+|..+| .+|+|.++|.++... ..++.++||.|+..+++.+||
T Consensus 30 i~~iiG~sGsGKSTLl~~i~Gl~~p---~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv 106 (258)
T d1b0ua_ 30 VISIIGSSGSGKSTFLRCINFLEKP---SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 106 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC---CCCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHC
T ss_conf 9999989998299999999747667---8997799999933677520000235176799974544899833231411010
Q ss_pred HHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCC-CCCCCCCCC
Q ss_conf 999999987-128986424676764299984026999025787743103787654419999998199444-555337876
Q 000860 65 RETLDFAAR-CQGANDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLC-SDTVVGSEM 142 (1250)
Q Consensus 65 rEnL~F~a~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~-~~t~VG~~~ 142 (1250)
.||+.|+.. ..+.... + . ...++++++.++|.+. .+...+
T Consensus 107 ~env~~~~~~~~~~~~~-----------~----------~--------------~~~~~~~l~~~~l~~~~~~~~p~--- 148 (258)
T d1b0ua_ 107 LENVMEAPIQVLGLSKH-----------D----------A--------------RERALKYLAKVGIDERAQGKYPV--- 148 (258)
T ss_dssp HHHHHHHHHHTTCCCHH-----------H----------H--------------HHHHHHHHHHTTCCHHHHTSCGG---
T ss_pred CHHHHHHHHHHCCCCHH-----------H----------H--------------HHHHHHHHHHCCCCHHHHCCCCC---
T ss_conf 21365657876299989-----------9----------9--------------99999999982995244306822---
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECC
Q ss_conf 54476232014699998734980756417985602798999999999987708989999951899347820124688439
Q 000860 143 LRGVSGGQKKRVTTGEMIVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSD 222 (1250)
Q Consensus 143 ~~~LSGGQKqRisIA~aL~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~ 222 (1250)
.||||||||++|||||+.+|+++++||||+|||+.++.+|++.|+++.+ .|.|+++++|. ..++..++|||++|.+
T Consensus 149 --~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~vtHd-l~~~~~~adri~vm~~ 224 (258)
T d1b0ua_ 149 --HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHE-MGFARHVSSHVIFLHQ 224 (258)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEECSC-HHHHHHHCSEEEEEET
T ss_pred --CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCCCEEEEECC-HHHHHHHCCEEEEEEC
T ss_conf --0567788898999998439987885245556887888899876554103-68833899489-9999986999999979
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 80785548213999
Q 000860 223 GYLVYQGPRAEVLE 236 (1250)
Q Consensus 223 G~iv~~G~~~~l~~ 236 (1250)
|++++.|+++++..
T Consensus 225 G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 225 GKIEEEGDPEQVFG 238 (258)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999849999983
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.2e-43 Score=282.29 Aligned_cols=191 Identities=23% Similarity=0.359 Sum_probs=150.1
Q ss_pred CCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 34121003899957739999969999589999989599999806899999791378112233288974798789899999
Q 000860 674 KLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIE 753 (1250)
Q Consensus 674 ~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~ 753 (1250)
.+++|+|+|+.+++||++||+||||||||||+++|+|... ..+|.|.++|. ++||+|++.+++ .||+
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCS-EEHH
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE----------EEEEECCCCCCC-CEEE
T ss_conf 9767737599985999999998999829999999957974--78828999999----------999816430267-6032
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHH---HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 999999862899999988899999999---99819943222234699987679789899999999951996778839999
Q 000860 754 ESLWFSANLRLPKEISKDQRHEFVEEV---MSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTS 830 (1250)
Q Consensus 754 e~l~~~~~l~~~~~~~~~~~~~~v~~~---~~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpTs 830 (1250)
|++.|.. .......+...+.. .....+....++.++..+ ..||||||||++|||+|+++|+|++|||||+
T Consensus 115 eni~~~~------~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~LSgGqkQRv~lARaL~~~p~illLDEPts 187 (281)
T d1r0wa_ 115 ENIIFGV------SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYLLDSPFG 187 (281)
T ss_dssp HHHTTTS------CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTC-TTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred CCCCCCC------CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCCCHHHCCCCC
T ss_conf 1420333------45605799999997769999846123323555542-3779999999999999986963513338554
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCC
Q ss_conf 999999999999999986289889998068988999962030153239589990889
Q 000860 831 GLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKL 887 (1250)
Q Consensus 831 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~ 887 (1250)
+||+.+...+++.+......++|+|+++|++ +....+|+|++|.+ |++++.|++
T Consensus 188 ~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~ 241 (281)
T d1r0wa_ 188 YLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTF 241 (281)
T ss_dssp SSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 4898999999999998862899999992528--99985999999989-999998789
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.9e-42 Score=275.12 Aligned_cols=183 Identities=21% Similarity=0.295 Sum_probs=142.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99982799999689998981998999860149998892057433112278656544558889889999999871289864
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGANDS 80 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~~~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l~~~~~~ 80 (1250)
+++|+||||||||||+++|+|.++| .+|.|.++| .++||+|.+.+++ .||+|||.|+... .
T Consensus 64 ~vaivG~nGsGKSTLl~~i~Gl~~p---~~G~I~~~g----------~i~~v~Q~~~l~~-~tv~eni~~~~~~-----~ 124 (281)
T d1r0wa_ 64 MLAITGSTGSGKTSLLMLILGELEA---SEGIIKHSG----------RVSFCSQFSWIMP-GTIKENIIFGVSY-----D 124 (281)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCC---SEEEEECCS----------CEEEECSSCCCCS-EEHHHHHTTTSCC-----C
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC---CCCEEEECC----------EEEEEECCCCCCC-CEEECCCCCCCCC-----C
T ss_conf 9999989998299999999579747---882899999----------9999816430267-6032142033345-----6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 24676764299984026999025787743103787654419999998199444555337876544762320146999987
Q 000860 81 FAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI 160 (1250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRisIA~aL 160 (1250)
...+......+ +.......+.+..++.+|..+ .+|||||||||+|||||
T Consensus 125 ~~~~~~~~~~~------------------------------~~~~~i~~l~~~~~~~~~~~~-~~LSgGqkQRv~lARaL 173 (281)
T d1r0wa_ 125 EYRYKSVVKAC------------------------------QLQQDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAV 173 (281)
T ss_dssp HHHHHHHHHHT------------------------------TCHHHHTTSTTGGGCEECTTC-TTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH------------------------------HHHHHHHHCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHH
T ss_conf 05799999997------------------------------769999846123323555542-37799999999999999
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHH
Q ss_conf 3498075641798560279899999999998770898999995189934782012468843980785548213999
Q 000860 161 VGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGPRAEVLE 236 (1250)
Q Consensus 161 ~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~~~~l~~ 236 (1250)
+.+|+|++||||||+||+.++.++++.+..... .++|+|+++|+ .+.++.+|+|++|.+|+++++|+++++.+
T Consensus 174 ~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~itH~--~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 174 YKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSK--MEHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp HSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEEECSC--HHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECH--HHHHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf 869635133385544898999999999998862-89999999252--89998599999998999999878999960
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.4e-40 Score=264.13 Aligned_cols=196 Identities=19% Similarity=0.316 Sum_probs=158.4
Q ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 69999599999278321112544333412100389995773999996999958999998959999980689999979137
Q 000860 649 TMTFHNISYYVDTPQAMRSKGIHEKKLQLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 728 (1250)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~ 728 (1250)
.++++|+++.++ +++|+++|+.+++||+++|+||||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEEEC--------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEH
T ss_conf 599998999939--------------928842088985998999999999719999999966205--6778899998962
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 81122332889747987898999999999998628999999888999999999981994322223469998767978989
Q 000860 729 EQSTFARISGYVEQEDVHSPQVTIEESLWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRK 808 (1250)
Q Consensus 729 ~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~~~~~~~g~~~~~~lSgGqr~ 808 (1250)
.. .+..++|++|+..+...+|++|++.+.+.+... ..++ +.+.+.++.+++.+.. ..++ .|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~-~~~~-----~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNK----NEIMDALESVEVLDLK-KKLG-----ELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCH----HHHHHHHHHTTCCCTT-SBGG-----GSCHHHHH
T ss_pred HH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC-CCCH----HHHHHHHHHCCCCCCC-CCCC-----CCCCCHHH
T ss_conf 67--367089995013578882899999999975488-6379----9999999874885630-1268-----68971888
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEEC
Q ss_conf 999999995199677883999999999999999999998628988999806898899996203015323
Q 000860 809 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKR 877 (1250)
Q Consensus 809 r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~ 877 (1250)
|++||++++.+|++++|||||+|||..+...+++.++++.+++.++++++|+. ...||.+..|.+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH----HHHCCHHHHEEE
T ss_conf 89999988649989998686201699999999999999986799999999162----544161234010
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.6e-38 Score=249.17 Aligned_cols=184 Identities=26% Similarity=0.347 Sum_probs=152.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 99982799999689998981998999860149998892057433---112278656544558889889999999871289
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQ---VQRASAYIGQTDNHIAELTVRETLDFAARCQGA 77 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~---~~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l~~~ 77 (1250)
+++|+||||||||||+++|+|..+ .+|+|.++|.++.... .+...+|++|+.......++.+++.++..-+
T Consensus 27 i~~iiG~nGaGKSTLl~~l~Gl~~----~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 100 (231)
T d1l7vc_ 27 ILHLVGPNGAGKSTLLARMAGMTS----GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK-- 100 (231)
T ss_dssp EEECBCCTTSSHHHHHHHHHTSCC----CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCT--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC----CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHHHHHHHCCCHH--
T ss_conf 999998999809999999948879----95599999999986998999864024512135774420988764100146--
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 86424676764299984026999025787743103787654419999998199444555337876544762320146999
Q 000860 78 NDSFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTG 157 (1250)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRisIA 157 (1250)
. .+..+++++..++|++..+..+. .||||||||++||
T Consensus 101 --~------------------------------------~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA 137 (231)
T d1l7vc_ 101 --T------------------------------------RTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLA 137 (231)
T ss_dssp --T------------------------------------CHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHH
T ss_pred --H------------------------------------HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHH
T ss_conf --6------------------------------------89999999986598767676844-----5699889999999
Q ss_pred HHHHC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECC
Q ss_conf 98734-------98075641798560279899999999998770898999995189934782012468843980785548
Q 000860 158 EMIVG-------PRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGP 230 (1250)
Q Consensus 158 ~aL~~-------~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~ 230 (1250)
|+++. +|+|++|||||+|||+.++..+++.|+++.+ .|.|+++++|+ ..++.+.+|++++|.+|++++.|+
T Consensus 138 ~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~vtHd-l~~~~~~~dri~vl~~G~iv~~G~ 215 (231)
T d1l7vc_ 138 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASGR 215 (231)
T ss_dssp HHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEECCCC-HHHHHHHCSBCCBEETTEECCCSB
T ss_pred HHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHHHHHHCCEEEEEECCEEEEECC
T ss_conf 9998517133899889997187777898999999999999986-79999999677-999999799999997998999889
Q ss_pred HHHHH
Q ss_conf 21399
Q 000860 231 RAEVL 235 (1250)
Q Consensus 231 ~~~l~ 235 (1250)
.+++.
T Consensus 216 ~~ev~ 220 (231)
T d1l7vc_ 216 REEVL 220 (231)
T ss_dssp HHHHS
T ss_pred HHHHH
T ss_conf 99981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.1e-34 Score=229.82 Aligned_cols=169 Identities=18% Similarity=0.247 Sum_probs=134.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 99982799999689998981998999860149998892057433112278656544558889889999999871289864
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQTDNHIAELTVRETLDFAARCQGANDS 80 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~~~~~~~yv~Q~d~~~~~lTVrEnL~F~a~l~~~~~~ 80 (1250)
+++|+||||||||||+++|+|.++| .+|+|.+||.++.. .+..++|++|+..+...+|++|++.+.+.+.+...+
T Consensus 29 i~~l~G~NGsGKSTLl~~i~gl~~p---~~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~ 103 (200)
T d1sgwa_ 29 VVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN 103 (200)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCC
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC---CCCEEEECCEEHHH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 9999999997199999999662056---77889999896267--367089995013578882899999999975488637
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 24676764299984026999025787743103787654419999998199444555337876544762320146999987
Q 000860 81 FAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEMI 160 (1250)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRisIA~aL 160 (1250)
. ..+.+.++.+++.+. +..++ .||||||||++|||++
T Consensus 104 ~-------------------------------------~~~~~~l~~~~~~~~-~~~~~-----~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 104 K-------------------------------------NEIMDALESVEVLDL-KKKLG-----ELSQGTIRRVQLASTL 140 (200)
T ss_dssp H-------------------------------------HHHHHHHHHTTCCCT-TSBGG-----GSCHHHHHHHHHHHHT
T ss_pred H-------------------------------------HHHHHHHHHCCCCCC-CCCCC-----CCCCCHHHHHHHHHHH
T ss_conf 9-------------------------------------999999987488563-01268-----6897188889999988
Q ss_pred HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECC
Q ss_conf 34980756417985602798999999999987708989999951899347820124688439
Q 000860 161 VGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSD 222 (1250)
Q Consensus 161 ~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~ 222 (1250)
+.+|++++|||||+|||..++..+++.|+++.+..+ ++|++.||. +..+|.+.+|.+
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~-~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG-IVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHS-EEEEEESSC----CTTSSEEEEGGG
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECH----HHHCCHHHHEEE
T ss_conf 649989998686201699999999999999986799-999999162----544161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.48 E-value=7.5e-16 Score=112.32 Aligned_cols=79 Identities=14% Similarity=-0.005 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCCEEEEECCCE
Q ss_conf 797898999999999519967788399999999999999999999862-8988999806898899996203015323958
Q 000860 802 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD-TGRTVVCTIHQPSIEIFEAFDELLLMKRGGR 880 (1250)
Q Consensus 802 lSgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~ 880 (1250)
+++|++++..+++++..+|+++++|||+...+ ......+.+.+..+ .+.++++++|+.. ....+|++..+.+ +.
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~~-~~ 156 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKEIRRLPG-AV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSSC--CSHHHHHHHTCTT-CE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHCCCCCEEEEEECCHH--HHHHHCEEEEEEC-CE
T ss_conf 53201378999999740997423027773100--4579999999875057978999974477--8986365998719-99
Q ss_pred EEEEC
Q ss_conf 99908
Q 000860 881 VIYGG 885 (1250)
Q Consensus 881 ~~~~g 885 (1250)
+..-+
T Consensus 157 i~~v~ 161 (178)
T d1ye8a1 157 LIELT 161 (178)
T ss_dssp EEECC
T ss_pred EEEEC
T ss_conf 99989
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.42 E-value=1.7e-14 Score=103.87 Aligned_cols=158 Identities=15% Similarity=0.118 Sum_probs=99.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCCCC--EEEEECCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 9982799999689998981998999860149998892057433112--27865654455888988999999987128986
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQR--ASAYIGQTDNHIAELTVRETLDFAARCQGAND 79 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~~~~--~~~yv~Q~d~~~~~lTVrEnL~F~a~l~~~~~ 79 (1250)
.+|+||||||||||++.|+|.+++ ..|.+..++.+......+. .+.+...........+..+...+
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 70 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGK---RAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLV--------- 70 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGG---GEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEE---------
T ss_pred EEEECCCCCHHHHHHHHHHHCCCC---CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 999989993899999999814888---86469987713288887653112336677788754113455443---------
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 42467676429998402699902578774310378765441999999819944455533787654476232014699998
Q 000860 80 SFAAYIKDLTRLEKERHIRPNPEIDAFMKASSVGGKKHSVSTDYVLNVLGLDLCSDTVVGSEMLRGVSGGQKKRVTTGEM 159 (1250)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iL~~lgL~~~~~t~VG~~~~~~LSGGQKqRisIA~a 159 (1250)
++. .+. .....+++|+++|.+++++
T Consensus 71 ---------------------------------~~~---------------------~~~-~~~~~~~~~~~~~~~l~~~ 95 (178)
T d1ye8a1 71 ---------------------------------GSY---------------------GVN-VQYFEELAIPILERAYREA 95 (178)
T ss_dssp ---------------------------------TTE---------------------EEC-HHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------HHH---------------------HCC-CCHHHHHHHHHHHHHHHHH
T ss_conf ---------------------------------023---------------------037-6256653201378999999
Q ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECC
Q ss_conf 73498075641798560279899999999998770898999995189934782012468843980785548
Q 000860 160 IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVLLSDGYLVYQGP 230 (1250)
Q Consensus 160 L~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~vL~~G~iv~~G~ 230 (1250)
+..+|+++++|||....+ .....++.+.+..+..+.+++++.|+. +.....|++..+.+|+++.-++
T Consensus 96 ~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 96 KKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEEEECCT
T ss_pred HHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHCCCCCEEEEEECCH--HHHHHHCEEEEEECCEEEEECC
T ss_conf 740997423027773100--457999999987505797899997447--7898636599871999999899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.18 E-value=1.8e-09 Score=72.55 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEE
Q ss_conf 76797898999999999----51996778839999999999999999999986289889998068988999962030153
Q 000860 800 FGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLM 875 (1250)
Q Consensus 800 ~~lSgGqr~r~~ia~~l----~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 875 (1250)
..+|+|||+...++..+ ..+++++++|||-++|++.....+.+.|+..++ ..-+|+|+|.|. +.+.+|++..+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~v 294 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHGV 294 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCCEEEE
T ss_conf 102577766777776655654226744554320335797899999999998554-887999989889--99732428999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.05 E-value=2.9e-09 Score=71.22 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=62.3
Q ss_pred CCCCCCCCCHHHHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEE
Q ss_conf 54476232014699998----73498075641798560279899999999998770898999995189934782012468
Q 000860 143 LRGVSGGQKKRVTTGEM----IVGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLV 218 (1250)
Q Consensus 143 ~~~LSGGQKqRisIA~a----L~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~ 218 (1250)
...+|+|||+...++.. ...+++++++|||-++|++.....+.+.|+...+ +.-+|+++ |+++++..+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitT--Hsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVIT--HNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEEC--CCTTGGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEE--CCHHHHHHCCCEE
T ss_conf 1102577766777776655654226744554320335797899999999998554--88799998--9889997324289
Q ss_pred E--ECCCE
Q ss_conf 8--43980
Q 000860 219 L--LSDGY 224 (1250)
Q Consensus 219 v--L~~G~ 224 (1250)
. +.+|.
T Consensus 293 ~v~~~~g~ 300 (308)
T d1e69a_ 293 GVTMVNGV 300 (308)
T ss_dssp EEEESSSC
T ss_pred EEEEECCE
T ss_conf 99996999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.95 E-value=1.7e-09 Score=72.75 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEE
Q ss_conf 6797898999999999----51996778839999999999999999999986289889998068988999962030153
Q 000860 801 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLM 875 (1250)
Q Consensus 801 ~lSgGqr~r~~ia~~l----~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l 875 (1250)
.+|||||.++++|.-+ ..+++++++|||+++||......+.+.|++++..+.-+|+++|+| .+....|+.+..
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 32230479999999999954799977999688777899999999999999728998899995878--999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.67 E-value=4.2e-08 Score=63.99 Aligned_cols=74 Identities=24% Similarity=0.340 Sum_probs=59.0
Q ss_pred CCCCCCCCHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEE
Q ss_conf 44762320146999987----34980756417985602798999999999987708989999951899347820124688
Q 000860 144 RGVSGGQKKRVTTGEMI----VGPRKTLFMDEISTGLDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETFELFDDLVL 219 (1250)
Q Consensus 144 ~~LSGGQKqRisIA~aL----~~~~~IllLDEpTSgLDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~~~fD~I~v 219 (1250)
..+|||||.++++|-.+ +.++++++||||+++||+.....+.+.|++++. .+.-+|+++|+ +++...+|+++.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~--~~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECC--HHHHHHCCCEEE
T ss_conf 332230479999999999954799977999688777899999999999999728-99889999587--899973661799
Q ss_pred E
Q ss_conf 4
Q 000860 220 L 220 (1250)
Q Consensus 220 L 220 (1250)
.
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.04 E-value=0.0002 Score=41.07 Aligned_cols=61 Identities=11% Similarity=0.189 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 98999999999519967788399999999999999999-9998628988999806898899996
Q 000860 806 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRA-VRNTVDTGRTVVCTIHQPSIEIFEA 868 (1250)
Q Consensus 806 qr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~~~~~ 868 (1250)
|-++++-....+.+..++++||.-+|-|+.....+... ++.+.+.+..+++++|.. ++..+
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHHH
T ss_conf 678898775028977278554545686233200258888888862376137865202--33322
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=0.00019 Score=41.22 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHC-CCEEEEEECCCC
Q ss_conf 89899999999951996778839999999999999999-99998628-988999806898
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-AVRNTVDT-GRTVVCTIHQPS 862 (1250)
Q Consensus 805 Gqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~-~l~~~~~~-g~tvi~~~H~~~ 862 (1250)
.|-+|++-...-..+..++++||+-+|=++.....+.. .++.+... +..+++++|...
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 999999999974546608853222358774566678987645432045442898524687
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.90 E-value=3.2e-05 Score=46.04 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=28.7
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEECCC
Q ss_conf 4980756417985602798999999-99998770898999995189
Q 000860 162 GPRKTLFMDEISTGLDSSTTFQIVK-CVRNFVHQMDATALMALLQP 206 (1250)
Q Consensus 162 ~~~~IllLDEpTSgLDs~s~~~i~~-~L~~l~~~~g~TvI~~i~q~ 206 (1250)
.+..++++||..+|=|+.....+.. .+..+.+ .+..+++++|.+
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~~ 157 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYF 157 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCH
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH-CCCCEEEEEECH
T ss_conf 977278554545686233200258888888862-376137865202
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.81 E-value=1.8e-05 Score=47.55 Aligned_cols=154 Identities=15% Similarity=0.130 Sum_probs=71.3
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC--CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 10038999577399999699995899999895999--9980689999979137811223328897479878989999999
Q 000860 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRK--TGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEES 755 (1250)
Q Consensus 678 L~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~--~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~ 755 (1250)
|+.+.+-+.+|+++.|.|++|+||||++.-++-.. ..+ ..+.|+.- .++..+.
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g-------------------~~v~~~s~------E~~~~~~ 79 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-------------------KKVGLAML------EESVEET 79 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC-------------------CCEEEEES------SSCHHHH
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCEEEEEE------CCCHHHH
T ss_conf 8887469789808999947999799999999972655336-------------------63457640------1111357
Q ss_pred H-HHHHH-CCCCCCCCHHHHH-----HHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 9-99986-2899999988899-----9999999981-9943222234699987679789899999999951996778839
Q 000860 756 L-WFSAN-LRLPKEISKDQRH-----EFVEEVMSLV-ELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDE 827 (1250)
Q Consensus 756 l-~~~~~-l~~~~~~~~~~~~-----~~v~~~~~~l-~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDE 827 (1250)
. ++.+. ...+.......+. ...+++.+.+ +..... ... ........+.....-...--.+|+++++|-
T Consensus 80 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vvID~ 155 (277)
T d1cr2a_ 80 AEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFH-LYD---SFAEAETDRLLAKLAYMRSGLGCDVIILDH 155 (277)
T ss_dssp HHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEE-EEC---CC-CCCHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEE-EEC---CCCCHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 7699998645871010122222145677888988740352146-621---433106899999865432136762599705
Q ss_pred CC-----CCC--CHHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf 99-----999--999999999999998628-9889998068
Q 000860 828 PT-----SGL--DARAAAIVMRAVRNTVDT-GRTVVCTIHQ 860 (1250)
Q Consensus 828 pT-----sgL--D~~~~~~i~~~l~~~~~~-g~tvi~~~H~ 860 (1250)
-+ .+- +......++..|++++++ +.+|++++|-
T Consensus 156 l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 156 ISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp EEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 42120346544306778999999999765016552031035
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=0.00012 Score=42.34 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEECCC
Q ss_conf 0756417985602798999999-99998770898999995189
Q 000860 165 KTLFMDEISTGLDSSTTFQIVK-CVRNFVHQMDATALMALLQP 206 (1250)
Q Consensus 165 ~IllLDEpTSgLDs~s~~~i~~-~L~~l~~~~g~TvI~~i~q~ 206 (1250)
.++++||+.+|=++.....+.. .++.+..+.+..+++++|.+
T Consensus 122 sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 122 SLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp EEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 0885322235877456667898764543204544289852468
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.53 E-value=0.00031 Score=39.82 Aligned_cols=148 Identities=19% Similarity=0.138 Sum_probs=70.9
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHH-HHHHHCC
Q ss_conf 957739999969999589999989599999806899999791378112233288974798789899999999-9998628
Q 000860 685 FSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESL-WFSANLR 763 (1250)
Q Consensus 685 ~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l-~~~~~l~ 763 (1250)
+.||+++.|.|++|+|||||+.-|+.....+. -. .+.... -...+-|+..++ +..+.. ++.+..
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~----~~-~~~~~~---~~~~vl~~~~E~------~~~~~~~Rl~~~~- 90 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGP----DL-LEVGEL---PTGPVIYLPAED------PPTAIHHRLHALG- 90 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCC----CT-TCCCCC---CCCCEEEEESSS------CHHHHHHHHHHHH-
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC----CC-CCCCCC---CCCCEEEEECCC------HHHHHHHHHHHHH-
T ss_conf 55895899992899989999999999997699----72-111235---787368985123------4999999999986-
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC-----CCCHHHHH
Q ss_conf 9999998889999999999819943222234699987679789899999999951996778839999-----99999999
Q 000860 764 LPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTS-----GLDARAAA 838 (1250)
Q Consensus 764 ~~~~~~~~~~~~~v~~~~~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpTs-----gLD~~~~~ 838 (1250)
...+.... ......+.+....+... ...-+... .-......+++++++|.-+. --|.....
T Consensus 91 --~~~~~~~~----~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~ 156 (274)
T d1nlfa_ 91 --AHLSAEER----QAVADGLLIQPLIGSLP-------NIMAPEWF-DGLKRAAEGRRLMVLDTLRRFHIEEENASGPMA 156 (274)
T ss_dssp --TTSCHHHH----HHHHHHEEECCCTTSCC-------CTTSHHHH-HHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred --HCCCHHHH----HCCCCCCEECCCCCCCC-------HHHHHHHH-HHHHHHCCCCCEEECCCHHHHCCCCCCCHHHHH
T ss_conf --23686665----31233323214567420-------35789999-998875267658962813542266523225689
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCC
Q ss_conf 999999998628-98899980689
Q 000860 839 IVMRAVRNTVDT-GRTVVCTIHQP 861 (1250)
Q Consensus 839 ~i~~~l~~~~~~-g~tvi~~~H~~ 861 (1250)
.++..|++++.. +++++++.|..
T Consensus 157 ~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 157 QVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 999887777644797540131005
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.32 E-value=8e-05 Score=43.53 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=26.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 773999996999958999998959999980689999
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIK 722 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~ 722 (1250)
+|...+++|+||.|||||+|.|.+... ..+|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~--~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC--CC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH--HHCCCCC
T ss_conf 698089978898778888773053555--0106842
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.26 E-value=0.0036 Score=33.22 Aligned_cols=123 Identities=21% Similarity=0.206 Sum_probs=64.1
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 89995773999996999958999998959999980689999979137811223328897479878989999999999986
Q 000860 682 SGIFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSAN 761 (1250)
Q Consensus 682 s~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~~ 761 (1250)
...++.+.-+.|.|+.||||||+|++|.+..+... --+.+... ...
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~--rivtiEd~--~El------------------------------ 205 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE--RIISIEDT--EEI------------------------------ 205 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC--CEEEEESS--CCC------------------------------
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCC--CEEECCCH--HHH------------------------------
T ss_conf 99998378889994035662578999865301456--23311322--655------------------------------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 28999999888999999999981994322223469998767978989999999995199677883999999999999999
Q 000860 762 LRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 841 (1250)
Q Consensus 762 l~~~~~~~~~~~~~~v~~~~~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l~~~p~il~lDEpTsgLD~~~~~~i~ 841 (1250)
.++... .+..-..+ .+++-.+ .+-.+|=.+|+.++++|--.. .+ .
T Consensus 206 -~l~~~~-------------------~~~~~~~~----~~~~~~~----ll~~~lR~~pd~iivgEiR~~---ea-~--- 250 (323)
T d1g6oa_ 206 -VFKHHK-------------------NYTQLFFG----GNITSAD----CLKSCLRMRPDRIILGELRSS---EA-Y--- 250 (323)
T ss_dssp -CCSSCS-------------------SEEEEECB----TTBCHHH----HHHHHTTSCCSEEEESCCCST---HH-H---
T ss_pred -HCCCCC-------------------CCCEECCC----CCHHHHH----HHHHHHCCCCCCCCCCCCCCH---HH-H---
T ss_conf -111124-------------------54100146----5424999----999974349985457866746---59-9---
Q ss_pred HHHHHHHHCC-CEEEEEECCCCHHHHHHHCCEEEEE
Q ss_conf 9999986289-8899980689889999620301532
Q 000860 842 RAVRNTVDTG-RTVVCTIHQPSIEIFEAFDELLLMK 876 (1250)
Q Consensus 842 ~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~v~~l~ 876 (1250)
..++.+ ..| .-++.|+|-.+. ....+++.-|.
T Consensus 251 ~~l~a~-~tGh~g~~tT~Ha~s~--~~a~~Rl~~l~ 283 (323)
T d1g6oa_ 251 DFYNVL-CSGHKGTLTTLHAGSS--EEAFIRLANMS 283 (323)
T ss_dssp HHHHHH-HTTCSCEEEEECCSSH--HHHHHHHHHHH
T ss_pred HHHHHH-HHCCCCEEEEECCCCH--HHHHHHHHHHC
T ss_conf 999999-8169857998787999--99999999852
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.16 E-value=0.00013 Score=42.18 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
++++|+||.|||||+|.|.|..
T Consensus 98 ~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 98 STMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp EEEECSTTSSHHHHHHHHSTTC
T ss_pred EEEECCCCCCHHHHHHHHCCHH
T ss_conf 8997889877888877305355
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.08 E-value=0.00018 Score=41.37 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=16.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7399999699995899999895999
Q 000860 688 GVLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 688 G~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
|.++.|+||||||||||.+.|..+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7499998999999999999998458
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.05 E-value=0.00023 Score=40.64 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77399999699995899999895999
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.|+++.|.||+||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=97.03 E-value=0.0027 Score=33.97 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=36.3
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEE
Q ss_conf 99999519967788399999999999999999999862898899980689889999620301
Q 000860 812 IAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELL 873 (1250)
Q Consensus 812 ia~~l~~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~ 873 (1250)
+..+|=.+|++++..|... ..++... -+.+..|..|+.|.|-.+ .+...++++
T Consensus 220 l~~~lR~dPDvi~igEiRd---~~ta~~a----~~aa~tGhlV~tTlHa~~--a~~~~~Rl~ 272 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIRD---LETAQIA----VQASLTGHLVMSTLHTNT--AVGAVTRLR 272 (401)
T ss_dssp HHHHGGGCCSEEEESCCCS---HHHHHHH----HHHHHTTCEEEEEECCSS--SHHHHHHHH
T ss_pred HHHHHHHCCCEEEECCCCC---HHHHHHH----HHHHHCCCEEEEEECCCC--HHHHHHHHH
T ss_conf 9999841388898457687---5999999----999724985899833676--676654321
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.00026 Score=40.35 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
++|.|++|||||||++.|+.++
T Consensus 5 i~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 5 LAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9999189998999999999999
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.89 E-value=9.5e-05 Score=43.06 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=25.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 773999996999958999998959999980689999
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIK 722 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~ 722 (1250)
.|..+.++|+||.|||||+|.|.+... ..+|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH--HHHCCCC
T ss_conf 356499987787348789875151767--6403555
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.00016 Score=41.68 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
+++|+|++|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.86 E-value=0.00053 Score=38.39 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57739999969999589999989599
Q 000860 686 SPGVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 686 ~~G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++-++.+.||+||||||+|.++...
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 41054898767877744779998666
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.0046 Score=32.54 Aligned_cols=48 Identities=8% Similarity=0.093 Sum_probs=32.4
Q ss_pred HHHCCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 87349807564179856-----0279899999999998770898999995189
Q 000860 159 MIVGPRKTLFMDEISTG-----LDSSTTFQIVKCVRNFVHQMDATALMALLQP 206 (1250)
Q Consensus 159 aL~~~~~IllLDEpTSg-----LDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~ 206 (1250)
....+++++++|--+.- -|.....+++..|+.+++..+.+++++.|..
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 75267658962813542266523225689999887777644797540131005
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.83 E-value=0.00042 Score=39.06 Aligned_cols=26 Identities=35% Similarity=0.564 Sum_probs=21.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77399999699995899999895999
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.|.++.|+||||+||+||.+.|....
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 98099999999999999999998639
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.78 E-value=9.2e-05 Score=43.16 Aligned_cols=16 Identities=50% Similarity=0.750 Sum_probs=5.0
Q ss_pred ECCCCCCHHHHHHHHH
Q ss_conf 2799999689998981
Q 000860 5 LGPPGSGKSTLLLALA 20 (1250)
Q Consensus 5 iGpsGSGKSTLL~~L~ 20 (1250)
+|+||.|||||+|+|.
T Consensus 103 ~G~SGVGKSSLiN~L~ 118 (231)
T d1t9ha2 103 AGQSGVGKSSLLNAIS 118 (231)
T ss_dssp EESHHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHC
T ss_conf 8778734878987515
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.77 E-value=0.00046 Score=38.76 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577399999699995899999895999
Q 000860 686 SPGVLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 686 ~~G~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
+.|.++.|+|++||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.00049 Score=38.61 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=22.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577399999699995899999895999
Q 000860 686 SPGVLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 686 ~~G~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.73 E-value=0.00046 Score=38.80 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.++|+|++|+|||||+|.|+|+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.73 E-value=0.00023 Score=40.61 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
+++|+|++|||||||++.|..+
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~ 24 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999809999899999999999
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.66 E-value=0.00065 Score=37.87 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=19.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577399999699995899999895999
Q 000860 686 SPGVLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 686 ~~G~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
++|-.+.|+||+||||||+.+.|+.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.65 E-value=0.00042 Score=39.06 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=19.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99982799999689998981998
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~ 23 (1250)
+++|+||.|||||||++.|+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.63 E-value=0.00047 Score=38.72 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|+|++|+|||||+|.|+|+-.
T Consensus 26 I~lvG~~n~GKSTLin~L~g~~~ 48 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINRKN 48 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHCCCCC
T ss_conf 99989999879999998529874
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.59 E-value=0.00067 Score=37.79 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.++|.||+|+|||||.+.|+.+.
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998999999999984
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.59 E-value=0.00094 Score=36.85 Aligned_cols=24 Identities=54% Similarity=0.656 Sum_probs=21.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
+.+|.||+||||||+.+.|+.+..
T Consensus 6 iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999988999988999999999959
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.53 E-value=0.00077 Score=37.39 Aligned_cols=13 Identities=23% Similarity=0.148 Sum_probs=4.6
Q ss_pred EEECCEEEEEECC
Q ss_conf 9957739999969
Q 000860 684 IFSPGVLTALVGS 696 (1250)
Q Consensus 684 ~~~~G~~~~i~G~ 696 (1250)
.++-|..+.++.|
T Consensus 102 ~Lp~G~Rv~~v~~ 114 (323)
T d1g6oa_ 102 NLANGERVQIVLS 114 (323)
T ss_dssp ECTTSCEEEEECT
T ss_pred EECCCEEEEEECC
T ss_conf 7268538998246
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.50 E-value=0.0008 Score=37.29 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
++||.|++|||||||.+.|+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9997898878999999999998
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.50 E-value=0.0004 Score=39.14 Aligned_cols=24 Identities=33% Similarity=0.600 Sum_probs=21.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
+.+|+|||||||||+++.|..+.+
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999989999999999999984589
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=7.5e-05 Score=43.71 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=25.8
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 100389995773999996999958999998959
Q 000860 678 LSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 678 L~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.++.++.+.+| ++.|+|+|||||||+|++|.-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 70279974998-089988999987999999999
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=3.8e-05 Score=45.56 Aligned_cols=23 Identities=43% Similarity=0.556 Sum_probs=19.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99982799999689998981998
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~ 23 (1250)
+|+|+|||||||||++.+|.--+
T Consensus 26 ~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 08998899998799999999996
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.47 E-value=0.016 Score=29.19 Aligned_cols=163 Identities=15% Similarity=0.072 Sum_probs=75.6
Q ss_pred EECE-EEEEECCEEEEEECCCCCCHHHHHHHHHCC-CCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 1003-899957739999969999589999989599-99980689999979137811223328897479878989999999
Q 000860 678 LSNV-SGIFSPGVLTALVGSSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEES 755 (1250)
Q Consensus 678 L~~v-s~~~~~G~~~~i~G~sGsGKsTLl~~l~g~-~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~ 755 (1250)
|+++ .|-+++|+++.|.|++|+|||+|..-++.. ...+ ...+.|+.-+ .+..+.
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~------------------~~~~~~~s~e------~~~~~~ 70 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF------------------DEPGVFVTFE------ETPQDI 70 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH------------------CCCEEEEESS------SCHHHH
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC------------------CCCCCCCCCC------CCHHHH
T ss_conf 9885568996983999994799999999999999999856------------------8874201266------799999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHH--HCCCEEEEECCCCCC
Q ss_conf 9999862899999988899999999998199432222346999876797898-9999999995--199677883999999
Q 000860 756 LWFSANLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQR-KRLTIAVELV--ANPSIIFMDEPTSGL 832 (1250)
Q Consensus 756 l~~~~~l~~~~~~~~~~~~~~v~~~~~~l~l~~~~~~~~g~~~~~~lSgGqr-~r~~ia~~l~--~~p~il~lDEpTsgL 832 (1250)
......... .. +.................. .......... ..+.-....+ .+|+++++|--+.-.
T Consensus 71 ~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~ 138 (242)
T d1tf7a1 71 IKNARSFGW----DL-------AKLVDEGKLFILDASPDPE-GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVF 138 (242)
T ss_dssp HHHHGGGTC----CH-------HHHHHTTSEEEEECCCCSS-CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTS
T ss_pred HHHHHHCCC----CH-------HHHHHHCCHHHHHHCCCHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999998499----84-------8988714302444210335-44443024589999999999886312220020788998
Q ss_pred ----CHHHH-HHHHHHHHHHHHCCCEEEEEECCCCH--------HHHHHHCCEEEEE
Q ss_conf ----99999-99999999986289889998068988--------9999620301532
Q 000860 833 ----DARAA-AIVMRAVRNTVDTGRTVVCTIHQPSI--------EIFEAFDELLLMK 876 (1250)
Q Consensus 833 ----D~~~~-~~i~~~l~~~~~~g~tvi~~~H~~~~--------~~~~~~d~v~~l~ 876 (1250)
+.... ..+...++...+.+.|++++.|.... .....+|.++.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 139 QQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 760572678999999999998639716884210255422246762335362999988
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.46 E-value=0.00077 Score=37.40 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
+++|.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.41 E-value=0.0032 Score=33.57 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=21.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77399999699995899999895999
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
+..-+.+.||+|+|||+|.+++++..
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 88757887899876304778878771
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.40 E-value=0.013 Score=29.74 Aligned_cols=152 Identities=18% Similarity=0.150 Sum_probs=75.7
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 8999577399999699995899999895999-998068999997913781122332889747987898999999999998
Q 000860 682 SGIFSPGVLTALVGSSGAGKTTLMDVLAGRK-TGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSPQVTIEESLWFSA 760 (1250)
Q Consensus 682 s~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~-~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~~ltv~e~l~~~~ 760 (1250)
.|-+++|+++.|.|++|+|||+|..-++... ..+ ..+.|+.-+ .+..+......
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~-------------------~~~~~is~e------~~~~~~~~~~~ 74 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVENACANK-------------------ERAILFAYE------ESRAQLLRNAY 74 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTT-------------------CCEEEEESS------SCHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC-------------------CCCCEEECC------CCHHHHHHHHH
T ss_conf 68986984999991899999999999999998723-------------------244112126------79999999999
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHCCCEEEEECCCC---CCCHHH
Q ss_conf 62899999988899999999998199432222346999876797898999999999-51996778839999---999999
Q 000860 761 NLRLPKEISKDQRHEFVEEVMSLVELDSLRHALVGSPGSFGLSTEQRKRLTIAVEL-VANPSIIFMDEPTS---GLDARA 836 (1250)
Q Consensus 761 ~l~~~~~~~~~~~~~~v~~~~~~l~l~~~~~~~~g~~~~~~lSgGqr~r~~ia~~l-~~~p~il~lDEpTs---gLD~~~ 836 (1250)
.... ..+ +.. ..+.....+... ......+ ..-.+...+ -.+|++++.|--+. +.+...
T Consensus 75 ~~~~----~~~-------~~~-~~~~~~~~~~~~-----~~~~~~~-~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~ 136 (242)
T d1tf7a2 75 SWGM----DFE-------EME-RQNLLKIVCAYP-----ESAGLED-HLQIIKSEINDFKPARIAIDSLSALARGVSNNA 136 (242)
T ss_dssp TTSC----CHH-------HHH-HTTSEEECCCCG-----GGSCHHH-HHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHH
T ss_pred HCCC----CHH-------HHH-HCCCEEEEEEEC-----CHHHHHH-HHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHH
T ss_conf 8299----869-------985-458617997300-----0101799-999999999840885332204314304899999
Q ss_pred HHHHHHHHHHHH-HCCCEEEEEECCCC---------HHHHHHHCCEEEEE
Q ss_conf 999999999986-28988999806898---------89999620301532
Q 000860 837 AAIVMRAVRNTV-DTGRTVVCTIHQPS---------IEIFEAFDELLLMK 876 (1250)
Q Consensus 837 ~~~i~~~l~~~~-~~g~tvi~~~H~~~---------~~~~~~~d~v~~l~ 876 (1250)
.......+.+.+ +.+.+++++.|... ..+....|.++.|.
T Consensus 137 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 137 FRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 99999999999998698399998567512554457764046421699999
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.38 E-value=0.00045 Score=38.85 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=25.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 998279999968999898199899986014999889
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG 37 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG 37 (1250)
..|+|++|||||||++.|..++...+..-|.|..++
T Consensus 4 i~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 4 WQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 999809999899999999999986798379998316
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.36 E-value=0.0013 Score=35.89 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 73999996999958999998959999
Q 000860 688 GVLTALVGSSGAGKTTLMDVLAGRKT 713 (1250)
Q Consensus 688 G~~~~i~G~sGsGKsTLl~~l~g~~~ 713 (1250)
..++.|.|++||||||+.+.|+.+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.31 E-value=0.0014 Score=35.69 Aligned_cols=20 Identities=25% Similarity=0.484 Sum_probs=12.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999699995899999895
Q 000860 690 LTALVGSSGAGKTTLMDVLA 709 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~ 709 (1250)
++.|.|++|||||||.+.|.
T Consensus 4 lIii~G~pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFI 23 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998999999999999999
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.31 E-value=0.0012 Score=36.11 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.+||+|.+|+|||||+|+|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79998999997899999995888
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.29 E-value=0.0012 Score=36.11 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.+||+|.+|+|||||+|.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.0014 Score=35.80 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=13.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
++||.|++||||||+.+.|+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989997879999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.27 E-value=0.021 Score=28.50 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=37.1
Q ss_pred CCCCEEEEECCCCCC---CHHHHHHHHHHHHHHHHHCCCEEEEEECCC---------CHHHHHHCCCEEEEC
Q ss_conf 498075641798560---279899999999998770898999995189---------934782012468843
Q 000860 162 GPRKTLFMDEISTGL---DSSTTFQIVKCVRNFVHQMDATALMALLQP---------PPETFELFDDLVLLS 221 (1250)
Q Consensus 162 ~~~~IllLDEpTSgL---Ds~s~~~i~~~L~~l~~~~g~TvI~~i~q~---------~~e~~~~fD~I~vL~ 221 (1250)
.++++++.|..+.-+ +..........|..++++.+.+++++.|.+ .......+|.++.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred CCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 088533220431430489999999999999999998698399998567512554457764046421699999
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.27 E-value=0.00069 Score=37.70 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=11.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99996999958999998959
Q 000860 691 TALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g 710 (1250)
+||+|++++|||||+|.|+|
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999879999999968
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.26 E-value=0.0013 Score=36.00 Aligned_cols=21 Identities=43% Similarity=0.692 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+|+|++|+|||||+|.|.|+
T Consensus 3 I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998899999999689
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.25 E-value=0.00091 Score=36.95 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|.||+|||||||.+.|+-.+.
T Consensus 10 I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 10 VAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999989999999999849
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.25 E-value=0.00096 Score=36.79 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999996999958999998959999
Q 000860 689 VLTALVGSSGAGKTTLMDVLAGRKT 713 (1250)
Q Consensus 689 ~~~~i~G~sGsGKsTLl~~l~g~~~ 713 (1250)
..+.+.||+|+|||||.++|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.23 E-value=0.0017 Score=35.27 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+|+|++|+|||||+++|+|..
T Consensus 11 V~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTST
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999997787
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.23 E-value=0.0013 Score=36.06 Aligned_cols=21 Identities=57% Similarity=0.727 Sum_probs=11.4
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 982799999689998981998
Q 000860 3 LLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~G~~ 23 (1250)
+|.||+||||||+.+.|+-++
T Consensus 8 ~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 8 LLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 898999999899999999997
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.22 E-value=0.0017 Score=35.26 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=16.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
++.|.||+||||||+.+.|+...
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 89998999999899999999980
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.0011 Score=36.40 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=21.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
+.+|+||+||||||+.+.|+.++.
T Consensus 8 iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899989999898999999999869
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.21 E-value=0.0013 Score=36.05 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.++|+|.+|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.0009 Score=36.96 Aligned_cols=25 Identities=44% Similarity=0.457 Sum_probs=22.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7739999969999589999989599
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.|.++.|+|++||||||+-+.|+.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9969998899999999999999999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.20 E-value=0.0015 Score=35.65 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|+|.+|+|||||+|.|.|+..
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999869999999858984
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.0022 Score=34.60 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=25.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99957739999969999589999989599
Q 000860 683 GIFSPGVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 683 ~~~~~G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
|-+++|+++.|.||+|+|||||..-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 89859979999958999999999999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.19 E-value=0.0015 Score=35.60 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.+.|+||+||||||+.+.|+.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.19 E-value=0.0014 Score=35.81 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|+|.+|+|||||+|+|.|...
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999978999999958886
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.18 E-value=0.0012 Score=36.15 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
|.+|+||||+||+||.+.|.-+.+
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999999999999999999986398
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.17 E-value=0.0019 Score=34.98 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=13.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++++|++|+|||||++.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999899999999677
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.16 E-value=0.0016 Score=35.39 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=9.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99996999958999998959
Q 000860 691 TALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g 710 (1250)
+.|+|||||||+||++.|+.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~ 23 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989999998999999997
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.14 E-value=0.0013 Score=35.95 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.14 E-value=0.0016 Score=35.37 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+++|++|+|||||++.|+|...
T Consensus 3 V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC---
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999989999999967775
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.0021 Score=34.67 Aligned_cols=24 Identities=42% Similarity=0.810 Sum_probs=17.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 739999969999589999989599
Q 000860 688 GVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 688 G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
|=.++++|++++|||||+|.|+|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.0017 Score=35.18 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 773999996999958999998959
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g 710 (1250)
..-++||.||+|||||||++.|..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 832897438999989999999999
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.12 E-value=0.0012 Score=36.10 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+|+|++|+|||||+|.|.|..
T Consensus 6 V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 6 IIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999988999999996799
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.11 E-value=0.0015 Score=35.63 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.++|+|++|+|||||+|.|.+..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.10 E-value=0.0012 Score=36.21 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=14.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 3999996999958999998959
Q 000860 689 VLTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 689 ~~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.++.|+||+||||||+.+.|+.
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 4899989999988999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.0016 Score=35.50 Aligned_cols=22 Identities=45% Similarity=0.785 Sum_probs=11.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
..|.||+|+|||||++.++..+
T Consensus 4 v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 4 VFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899971999999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.0018 Score=35.06 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+.|.||+|+|||||++.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889997199999999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.0021 Score=34.64 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=10.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.+.|+||||+||+||++.|..
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~ 25 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLIT 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
T ss_conf 199999899999999999997
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.09 E-value=0.0014 Score=35.81 Aligned_cols=24 Identities=46% Similarity=0.714 Sum_probs=21.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
+.+|.||+||||||+.+.|+..+.
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899989999998999999999809
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.08 E-value=0.0017 Score=35.26 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|+|||||||+||++.|+-+.+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.06 E-value=0.0023 Score=34.42 Aligned_cols=26 Identities=42% Similarity=0.547 Sum_probs=19.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57739999969999589999989599
Q 000860 686 SPGVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 686 ~~G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
++|-.+.|+||+||||||+-+.|+.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.04 E-value=0.0024 Score=34.33 Aligned_cols=22 Identities=41% Similarity=0.747 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++++|.+++|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.03 E-value=0.0016 Score=35.50 Aligned_cols=23 Identities=43% Similarity=0.574 Sum_probs=18.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99982799999689998981998
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~ 23 (1250)
+..|.|++||||||+.+.|....
T Consensus 4 lIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 99998999999999999999957
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.03 E-value=0.0012 Score=36.28 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+|+|++++|||||+|.|+|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.0016 Score=35.46 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
+.+|+||||+||+||++.|..+.+
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 199999899999999999997097
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.02 E-value=0.0024 Score=34.36 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99982799999689998981998
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~ 23 (1250)
+.+|+||+||||||+.+.|+-.+
T Consensus 8 iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998999998899999999997
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.00 E-value=0.0025 Score=34.16 Aligned_cols=23 Identities=43% Similarity=0.716 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.++++|.+|+|||||+|.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.98 E-value=0.0022 Score=34.57 Aligned_cols=21 Identities=48% Similarity=0.664 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999969999589999989599
Q 000860 691 TALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
+.|+||||||||||.+.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.96 E-value=0.0021 Score=34.74 Aligned_cols=23 Identities=48% Similarity=0.674 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|+|||||||+|+.+.|+-+.+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.96 E-value=0.0014 Score=35.79 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=12.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+|+|++++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.95 E-value=0.0025 Score=34.15 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+|.|++||||||+.+.|+-++
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999989899999999999
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.93 E-value=0.0021 Score=34.64 Aligned_cols=23 Identities=39% Similarity=0.780 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|.||+||||||+.+.|+-+++
T Consensus 8 I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 8 ILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp EEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 99982899988999999999858
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.91 E-value=0.0024 Score=34.28 Aligned_cols=22 Identities=45% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+|+|++|+|||||++.|+|..
T Consensus 8 I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 8 VAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999996888
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.89 E-value=0.0029 Score=33.81 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999699995899999895999
Q 000860 689 VLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 689 ~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.++.|+||+||||||+.+.|+...
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999999899999999985
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.89 E-value=0.0022 Score=34.55 Aligned_cols=23 Identities=48% Similarity=0.749 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+++|++++|||||++.|+|.-.
T Consensus 4 I~lvG~~nvGKSsLin~l~~~~~ 26 (161)
T d2gj8a1 4 VVIAGRPNAGKSSLLNALAGREA 26 (161)
T ss_dssp EEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989999989999999968886
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.88 E-value=0.0021 Score=34.62 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99996999958999998959
Q 000860 691 TALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g 710 (1250)
+.|+||+||||||+.+.|+.
T Consensus 6 I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99988999998999999999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.88 E-value=0.002 Score=34.87 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=20.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
+.+|+||+||||||+.+.|+-.+.
T Consensus 10 iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899989999998999999999859
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.87 E-value=0.0021 Score=34.71 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999969999589999989599
Q 000860 689 VLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 689 ~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+++|.|++||||||+.+.|+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998989999999999
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.83 E-value=0.0036 Score=33.20 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=25.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEEC
Q ss_conf 7399999699995899999895999-998068999997
Q 000860 688 GVLTALVGSSGAGKTTLMDVLAGRK-TGGYIEGDIKIS 724 (1250)
Q Consensus 688 G~~~~i~G~sGsGKsTLl~~l~g~~-~~~~~~G~i~~~ 724 (1250)
.-.++|.||.|+|||||++.|.... ..+..-+-+.++
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 15986117998889999999999876368751344346
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.82 E-value=0.0019 Score=34.94 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=20.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
+.+|-||+|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.82 E-value=0.012 Score=29.87 Aligned_cols=24 Identities=46% Similarity=0.360 Sum_probs=20.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 739999969999589999989599
Q 000860 688 GVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 688 G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
..++.++||+|+||||.+-=||.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.81 E-value=0.0022 Score=34.52 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++|+|++|+|||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999678
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.80 E-value=0.0019 Score=34.96 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999699995899999895999
Q 000860 691 TALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
+||+|++++|||||+|.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.80 E-value=0.0028 Score=33.86 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+++|.+++|||||+|.|.|..
T Consensus 8 I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999799998999999995898
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.75 E-value=0.0029 Score=33.80 Aligned_cols=21 Identities=48% Similarity=0.593 Sum_probs=11.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999969999589999989599
Q 000860 691 TALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
+.|+||+||||||+-+.|+.+
T Consensus 5 I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999999999999999
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.75 E-value=0.0024 Score=34.29 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
+..|.|++||||||+.+.|+.++.
T Consensus 5 iI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 999989999998999999999728
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.70 E-value=0.0042 Score=32.81 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=22.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57739999969999589999989599
Q 000860 686 SPGVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 686 ~~G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
+.|.++.+.|.|||||||+.+.|+.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99869999899999989999999988
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.70 E-value=0.003 Score=33.71 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=14.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899999899999999987
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.70 E-value=0.0026 Score=34.09 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=10.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99827999996899989819
Q 000860 2 TLLLGPPGSGKSTLLLALAG 21 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G 21 (1250)
.+|+||+||||||..+.|+-
T Consensus 4 I~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 4 VFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99979999998999999999
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.69 E-value=0.0029 Score=33.80 Aligned_cols=21 Identities=38% Similarity=0.457 Sum_probs=16.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999969999589999989599
Q 000860 691 TALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
+||+|+..||||||+|.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.0035 Score=33.33 Aligned_cols=23 Identities=48% Similarity=0.729 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+++||+||||||+-+.|+-++.
T Consensus 5 I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999999999999999969
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.68 E-value=0.003 Score=33.75 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=15.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
-+.++||+|+|||-|.+.||+..
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 47998999988999999999873
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.66 E-value=0.0039 Score=33.02 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|.||+||||||..+.|+-++.
T Consensus 6 IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99789998798999999999969
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.62 E-value=0.0038 Score=33.09 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=28.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 99999699995899999895999998068999997913781122332889747987898
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKEQSTFARISGYVEQEDVHSP 748 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~~v~q~~~~~~ 748 (1250)
++||.|++||||||+.+.|....... .-...+..+++|+.+.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~----------------~~~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW----------------PEHRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS----------------TTCCCEEEEEGGGGBCC
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH----------------CCCCCEEEEEEEEEECC
T ss_conf 99996899998768999999997304----------------68996599952156898
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.62 E-value=0.002 Score=34.86 Aligned_cols=23 Identities=43% Similarity=0.494 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|.||+|+|||||++.|...+.
T Consensus 57 IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 57 LGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 97438999989999999999997
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.61 E-value=0.0043 Score=32.73 Aligned_cols=20 Identities=45% Similarity=0.680 Sum_probs=9.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99996999958999998959
Q 000860 691 TALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g 710 (1250)
+||+|.-.+|||||++.|.|
T Consensus 8 IaiiGhvd~GKSTL~~~L~g 27 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTG 27 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99993458849999999970
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.60 E-value=0.0023 Score=34.48 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+|+|++.||||||++.|++.
T Consensus 8 IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 8 VSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999969985499999999823
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.58 E-value=0.0038 Score=33.08 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+|+|++.+|||||++.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCHHHHHHHHHHHC
T ss_conf 9999077870999999999743
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.0045 Score=32.63 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
++.|+||+||||||..+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.57 E-value=0.0035 Score=33.26 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|+||+||||||+.+.|+-.+.
T Consensus 6 I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.57 E-value=0.0038 Score=33.07 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=19.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7739999969999589999989599
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+.++.|+||+||||||+.+.|+.+
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7828999899999879999999998
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.57 E-value=0.0021 Score=34.70 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999699995899999895999
Q 000860 689 VLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 689 ~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
-.++|+|++++|||||+|.|.+..
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.56 E-value=0.0035 Score=33.32 Aligned_cols=31 Identities=39% Similarity=0.554 Sum_probs=24.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECC
Q ss_conf 998279999968999898199899986014999889
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNG 37 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG 37 (1250)
.++.||+|||||||.++|++++.. +-+.+|+
T Consensus 35 ilL~GpPGtGKT~la~~la~~~~~-----~~~~i~~ 65 (273)
T d1gvnb_ 35 FLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 65 (273)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHC-----CEEEEEC
T ss_conf 998897998899999999998651-----5489832
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.54 E-value=0.0037 Score=33.13 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=13.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+|+||+||||||+.+.|+-++
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899998799999999987
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.53 E-value=0.0048 Score=32.46 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+++|.+||||||+.+.|+..+
T Consensus 5 i~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999999999999999
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.51 E-value=0.0037 Score=33.16 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+++|++|+|||||++.|.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.51 E-value=0.003 Score=33.73 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=20.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
+..|+||+||||||+.+.|+-++.
T Consensus 10 iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 10 IIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899989999987999999999869
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.50 E-value=0.004 Score=32.93 Aligned_cols=22 Identities=50% Similarity=0.836 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+|+||+||||||..+.|+-++
T Consensus 6 iil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 6 AVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999986
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.49 E-value=0.0031 Score=33.58 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+++|++|+|||||++.|.+...
T Consensus 16 I~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 16 LVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999898999999967887
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.49 E-value=0.0045 Score=32.62 Aligned_cols=21 Identities=57% Similarity=0.684 Sum_probs=12.5
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 982799999689998981998
Q 000860 3 LLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~G~~ 23 (1250)
+|+|++||||||+.+.|+-.+
T Consensus 4 ~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 4 VFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEECCTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 998999998899999999983
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.0035 Score=33.28 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
+.+|-|++||||||+.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989997879999999999964
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.44 E-value=0.0059 Score=31.89 Aligned_cols=28 Identities=36% Similarity=0.465 Sum_probs=25.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995773999996999958999998959
Q 000860 683 GIFSPGVLTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 683 ~~~~~G~~~~i~G~sGsGKsTLl~~l~g 710 (1250)
|-+++|+++.|.|++|+|||||..-++.
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9986996999983899988999999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.43 E-value=0.0041 Score=32.89 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+++|++|+|||||++.+.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.42 E-value=0.0038 Score=33.08 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=20.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 773999996999958999998959
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.-+++.++|++||||||+.+-++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.41 E-value=0.0055 Score=32.05 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.2
Q ss_pred CEEEECCCCCCHHHHHHHHHC
Q ss_conf 999827999996899989819
Q 000860 1 MTLLLGPPGSGKSTLLLALAG 21 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G 21 (1250)
+.+++|++||||||+.+.++-
T Consensus 16 liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 16 VVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHTG
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999989999999997
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.39 E-value=0.0047 Score=32.49 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999699995899999895999
Q 000860 691 TALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
+.|+|++||||||+.+.||...
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.38 E-value=0.0047 Score=32.48 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=11.5
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 982799999689998981998
Q 000860 3 LLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.++|++||||||+-+.|+-++
T Consensus 6 il~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 6 FMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEESCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 998899998899999999994
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.38 E-value=0.0056 Score=32.01 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+.|+||+||||||+.+.|+..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999989999999998
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.36 E-value=0.026 Score=27.90 Aligned_cols=35 Identities=29% Similarity=0.229 Sum_probs=27.1
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 210038999577399999699995899999895999
Q 000860 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 677 iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.+|.....+ .|.-+.+.|+||+|||||...|..+-
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 178999999-99999998189999899999999859
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.35 E-value=0.004 Score=32.93 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
..|.|++||||||+-+.|+-++.
T Consensus 9 I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 9 IFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889999999999999999986
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.35 E-value=0.0049 Score=32.37 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999969999589999989599
Q 000860 689 VLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 689 ~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.-+.++||+|+|||.|.++||..
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 66999899998888999998621
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.0028 Score=33.86 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|+|++++|||||+|.|.|...
T Consensus 19 I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 19 VAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEECTTSSHHHHHTTTCCC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99988999989999999858985
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.32 E-value=0.0024 Score=34.33 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+|-|+|||||||+.+.|.-..
T Consensus 7 IgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 7 ISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEESCC---CCTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999780999999999997
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.31 E-value=0.0043 Score=32.74 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999969999589999989599
Q 000860 689 VLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 689 ~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++.++|.+||||||+.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.30 E-value=0.0051 Score=32.27 Aligned_cols=21 Identities=67% Similarity=1.040 Sum_probs=10.9
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 982799999689998981998
Q 000860 3 LLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~G~~ 23 (1250)
+|+||+||||||+.+.|+-.+
T Consensus 4 ~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 4 LLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEECCTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 998899999799999999998
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.30 E-value=0.0038 Score=33.04 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+|+|++|+|||||++.|.+..
T Consensus 3 V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 3 VLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999998099
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.29 E-value=0.0043 Score=32.75 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
+++|.||+||||||+-+.|+...
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.29 E-value=0.0039 Score=33.00 Aligned_cols=22 Identities=36% Similarity=0.368 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+.++|++|+|||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.28 E-value=0.0053 Score=32.19 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+.|+||+||||||+-+.|+.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999889999879999999999
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.27 E-value=0.0064 Score=31.65 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=11.7
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 982799999689998981998
Q 000860 3 LLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~G~~ 23 (1250)
+++|++|+|||||++.|.+..
T Consensus 6 ~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 6 LMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEECSTTSSHHHHHHHHTTCC
T ss_pred EEECCCCCCHHHHHHHHCCCC
T ss_conf 999999989999999980899
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.26 E-value=0.0059 Score=31.87 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.+.++|++||||||+-+.||.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.26 E-value=0.0057 Score=32.00 Aligned_cols=20 Identities=30% Similarity=0.645 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999699995899999895
Q 000860 690 LTALVGSSGAGKTTLMDVLA 709 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~ 709 (1250)
++||.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.25 E-value=0.005 Score=32.32 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=11.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99996999958999998959
Q 000860 691 TALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g 710 (1250)
++++|++|+|||||++.+.+
T Consensus 8 I~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999899999999967
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.25 E-value=0.0061 Score=31.81 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.24 E-value=0.0051 Score=32.29 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.0047 Score=32.47 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+++||+||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998799999899999999986
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.22 E-value=0.0069 Score=31.46 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=10.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
-+||+|.-.+|||||++.|.+
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~ 30 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITG 30 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHS
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 899997248869999999970
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.17 E-value=0.0059 Score=31.87 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=10.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99996999958999998959
Q 000860 691 TALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g 710 (1250)
+.++||+||||||+.+.|+.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989999998999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.17 E-value=0.0058 Score=31.93 Aligned_cols=19 Identities=47% Similarity=0.636 Sum_probs=9.1
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9996999958999998959
Q 000860 692 ALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 692 ~i~G~sGsGKsTLl~~l~g 710 (1250)
.++|++||||||+-+.|+.
T Consensus 5 vliG~~G~GKSTig~~La~ 23 (165)
T d2iyva1 5 VLVGLPGSGKSTIGRRLAK 23 (165)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9988999988999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.17 E-value=0.056 Score=25.78 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=20.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7739999969999589999989599
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+.+++++||+|+||||.+-=||.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9779999899999889999999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.15 E-value=0.0097 Score=30.53 Aligned_cols=27 Identities=37% Similarity=0.541 Sum_probs=23.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 999577399999699995899999895
Q 000860 683 GIFSPGVLTALVGSSGAGKTTLMDVLA 709 (1250)
Q Consensus 683 ~~~~~G~~~~i~G~sGsGKsTLl~~l~ 709 (1250)
|-+++|+++.|.||+|+|||||..-++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 995588799998589898899999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.15 E-value=0.0048 Score=32.44 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+++|++|+|||||++.+.+...
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999899999999967987
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.14 E-value=0.0073 Score=31.29 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+.|+||+||||||+.+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999879999999998
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.13 E-value=0.0059 Score=31.90 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.++++|...||||||+|+|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.13 E-value=0.0074 Score=31.27 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|.|++||||||+.+.|+.++.
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989899898999999999998
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.0055 Score=32.06 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|.||+||||+|+-+.|+-++.
T Consensus 6 I~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 6 ITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99779998898999999999969
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.008 Score=31.04 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.08 E-value=0.0052 Score=32.24 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.++++|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.99 E-value=0.011 Score=30.13 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=25.8
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 899957739999969999589999989599
Q 000860 682 SGIFSPGVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 682 s~~~~~G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+-+++|+++.|.|++|+|||++..-++-.
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 798628859999917999989999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.98 E-value=0.0069 Score=31.44 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
+++|-|+.||||||+++.|+...
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99988999988899999999870
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.97 E-value=0.0048 Score=32.46 Aligned_cols=35 Identities=31% Similarity=0.377 Sum_probs=23.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEEC
Q ss_conf 99827999996899989819989998601499988
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYN 36 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~in 36 (1250)
..|.||+|+|||||++.|...+......-|-+.++
T Consensus 54 igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 54 VGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 86117998889999999999876368751344346
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.0085 Score=30.89 Aligned_cols=26 Identities=35% Similarity=0.389 Sum_probs=21.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 57739999969999589999989599
Q 000860 686 SPGVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 686 ~~G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
+.|.+++|-|+.||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98059999899888999999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.97 E-value=0.0079 Score=31.09 Aligned_cols=23 Identities=52% Similarity=0.696 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+++|++||||||+-+.|+-++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.96 E-value=0.0068 Score=31.49 Aligned_cols=22 Identities=36% Similarity=0.684 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
++||+|...+|||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.91 E-value=0.0077 Score=31.17 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999699995899999895999
Q 000860 691 TALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
+.+.||+|+||||+.++|+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 8987999973889999998503
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.89 E-value=0.0097 Score=30.53 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+.|+||+||||||+-+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999979999999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.88 E-value=0.0078 Score=31.12 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.+.+.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998799998889999999998
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.88 E-value=0.0098 Score=30.49 Aligned_cols=23 Identities=30% Similarity=0.661 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|+||+||||||+.+.|+-++.
T Consensus 9 IiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 9 AAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHHBC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999987999999999979
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.87 E-value=0.0072 Score=31.36 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.++++|...||||||+|+|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.86 E-value=0.011 Score=30.31 Aligned_cols=23 Identities=43% Similarity=0.736 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
..+.||+|+||||+..+|+....
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99987999988899999999987
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.85 E-value=0.0089 Score=30.75 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+.++||+||||||..+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.84 E-value=0.01 Score=30.42 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999699995899999895999
Q 000860 689 VLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 689 ~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
-.++++|.+|+|||||++.|.+..
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999989899999996688
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.81 E-value=0.0065 Score=31.61 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
++.|.|++||||||+.+.|+.+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.80 E-value=0.0057 Score=31.96 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
-+.+.||+|+|||+|.++|++..
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.80 E-value=0.0083 Score=30.95 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+++|.+|||||||++.|.+...
T Consensus 18 I~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 18 VIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999898999999966888
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.78 E-value=0.0089 Score=30.77 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999969999589999989599
Q 000860 691 TALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
+.+.||+|+||||+.++++..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999789997487999999999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.75 E-value=0.01 Score=30.36 Aligned_cols=20 Identities=35% Similarity=0.728 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999699995899999895
Q 000860 690 LTALVGSSGAGKTTLMDVLA 709 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~ 709 (1250)
++||.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.74 E-value=0.011 Score=30.30 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=21.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7739999969999589999989599
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+..+.|.||+|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5987999869998299999999997
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.73 E-value=0.0092 Score=30.67 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.++.||+|+|||.|.++|+..+.
T Consensus 52 iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 52 ILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99989999888899999862132
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.72 E-value=0.012 Score=29.87 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=24.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995773999996999958999998959
Q 000860 683 GIFSPGVLTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 683 ~~~~~G~~~~i~G~sGsGKsTLl~~l~g 710 (1250)
+-+++|+++.|.|++|+|||++..-++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9976897999988998878899999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.68 E-value=0.0032 Score=33.50 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
..+.|++||||||+-+.|+-++.
T Consensus 22 I~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 22 VWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99889999999999999999997
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.67 E-value=0.0076 Score=31.19 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|-|+.||||||+++.|+..++
T Consensus 5 I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 5 ISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99987888779999999999973
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.66 E-value=0.012 Score=29.95 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
++||-|++|||||||.+.|..
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 998379987889999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.66 E-value=0.0056 Score=32.00 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
+.+|-|+.||||||+++.|+..++
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999889999888999999998707
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.63 E-value=0.041 Score=26.61 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=26.5
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 210038999577399999699995899999895999
Q 000860 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 677 iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.+|. ++..-.|.-+.+.|+||+|||||...|..+-
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 2899-9999999999998089999899999999859
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.01 Score=30.32 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7739999969999589999989599
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
+..-+.+.||+|+|||++.++|+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8886786689988822899999998
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.61 E-value=0.01 Score=30.45 Aligned_cols=20 Identities=35% Similarity=0.318 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99827999996899989819
Q 000860 2 TLLLGPPGSGKSTLLLALAG 21 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G 21 (1250)
.+++||+++|||||++.|++
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99994789849999999999
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.61 E-value=0.037 Score=26.88 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999969999589999989599
Q 000860 691 TALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
++++|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.61 E-value=0.011 Score=30.11 Aligned_cols=23 Identities=57% Similarity=0.794 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
..+.||+|+||||+.++++.++.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99978999748799999999987
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.60 E-value=0.01 Score=30.43 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999969999589999989599
Q 000860 689 VLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 689 ~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.-+.+.||+|+|||++.++||..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 07998896999889999998620
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.59 E-value=0.013 Score=29.78 Aligned_cols=22 Identities=41% Similarity=0.795 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+|+||+||||||+.+.|+-++
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999996
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.53 E-value=0.0022 Score=34.61 Aligned_cols=21 Identities=43% Similarity=0.668 Sum_probs=11.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+++|++++|||||+|.|+|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.44 E-value=0.0094 Score=30.63 Aligned_cols=21 Identities=48% Similarity=0.643 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999969999589999989599
Q 000860 691 TALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
+.+.||+|.||||+.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 898897998788899999998
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.41 E-value=0.013 Score=29.72 Aligned_cols=23 Identities=52% Similarity=0.850 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
..+.||+|+||||+.++|+.++.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 89879999738899999985038
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.41 E-value=0.016 Score=29.24 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+|+|...||||||+|+|+|.-
T Consensus 27 ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCHHHHHHHHHCCC
T ss_conf 9998189897999999996899
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.37 E-value=0.012 Score=30.04 Aligned_cols=23 Identities=43% Similarity=0.550 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.++++|++|+|||||++.+.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.0094 Score=30.62 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=19.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
+.+|-|++||||||+.+.|...+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 999968999987689999999973
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.36 E-value=0.013 Score=29.83 Aligned_cols=34 Identities=44% Similarity=0.696 Sum_probs=26.2
Q ss_pred CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 1210038999577399999699995899999895999
Q 000860 676 QLLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 676 ~iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.+|+.++. |=-+++|+||.++|||||||.|.|..
T Consensus 23 ~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 23 KILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99970799---87999988999997999999980998
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.35 E-value=0.013 Score=29.72 Aligned_cols=22 Identities=50% Similarity=0.607 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+++|++|+|||||++.+.+..
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989999999996487
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.35 E-value=0.0085 Score=30.90 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=39.7
Q ss_pred HHCCCEEEEECCCCCCCHHH------HHHHHHHHHHH----HH-CCCEEEEEECCCCHHHHHHHCCEEEEECC--CEEEE
Q ss_conf 51996778839999999999------99999999998----62-89889998068988999962030153239--58999
Q 000860 817 VANPSIIFMDEPTSGLDARA------AAIVMRAVRNT----VD-TGRTVVCTIHQPSIEIFEAFDELLLMKRG--GRVIY 883 (1250)
Q Consensus 817 ~~~p~il~lDEpTsgLD~~~------~~~i~~~l~~~----~~-~g~tvi~~~H~~~~~~~~~~d~v~~l~~g--g~~~~ 883 (1250)
...|.|+++||--.=..... ...+...+... .. .+..||+++++|.. .|.-+. ..| .+.++
T Consensus 95 ~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~-----ld~al~-r~gRfd~~i~ 168 (258)
T d1e32a2 95 KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS-----IDPALR-RFGRFDREVD 168 (258)
T ss_dssp HTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGG-----SCGGGT-STTSSCEEEE
T ss_pred HCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCC-----CCHHHH-HCCCCCCEEE
T ss_conf 6499499852111322578877770689998775001101234688117975799310-----252454-2463023237
Q ss_pred ECCCCCCCHHHHHHHHHC
Q ss_conf 088986504699896218
Q 000860 884 GGKLGVHSQIMIDYFQGL 901 (1250)
Q Consensus 884 ~g~~~~~~~~~~~yf~~~ 901 (1250)
.++++. ......++..
T Consensus 169 ~~~P~~--~~R~~il~~~ 184 (258)
T d1e32a2 169 IGIPDA--TGRLEILQIH 184 (258)
T ss_dssp CCCCCH--HHHHHHHHHT
T ss_pred CCCCCH--HHHHHHHHHH
T ss_conf 899998--8999873220
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.34 E-value=0.017 Score=29.04 Aligned_cols=23 Identities=48% Similarity=0.925 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
+.+.||+|+|||++.++|+.+..
T Consensus 48 iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCCCHHHHHHHHHCC
T ss_conf 78668998882289999999829
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.32 E-value=0.012 Score=29.95 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=11.0
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9827999996899989819
Q 000860 3 LLLGPPGSGKSTLLLALAG 21 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~G 21 (1250)
+++|++|+|||||++.+.+
T Consensus 6 ~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 6 TLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHC
T ss_conf 9999999898999999971
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.29 E-value=0.016 Score=29.12 Aligned_cols=19 Identities=53% Similarity=0.555 Sum_probs=9.5
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9982799999689998981
Q 000860 2 TLLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~ 20 (1250)
.+|.|+.||||||..+.+.
T Consensus 6 IgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9978988688999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.29 E-value=0.016 Score=29.13 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=18.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7739999969999589999989599
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.|..+++-|+.||||||+.+.|+..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9878999899888799999999999
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.27 E-value=0.016 Score=29.15 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
++|+|-+-+|||||+|+|+|-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 7688999998999999997889
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.25 E-value=0.017 Score=29.00 Aligned_cols=23 Identities=43% Similarity=0.676 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
..+.||+|+|||++.++|+.+..
T Consensus 43 vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99889699988999999862010
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.20 E-value=0.017 Score=29.07 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+++|.-.||||||+|+|+|.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9997689897999999996898
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.17 E-value=0.017 Score=28.94 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=21.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 773999996999958999998959999
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAGRKT 713 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g~~~ 713 (1250)
.|..+++-|+.||||||+.+.|+.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.14 E-value=0.014 Score=29.56 Aligned_cols=18 Identities=33% Similarity=0.698 Sum_probs=9.9
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 982799999689998981
Q 000860 3 LLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~ 20 (1250)
+++|++|+|||||++.+.
T Consensus 9 ~vvG~~~vGKTsLi~~l~ 26 (169)
T d3raba_ 9 LIIGNSSVGKTSFLFRYA 26 (169)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999999919899999997
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.13 E-value=0.013 Score=29.75 Aligned_cols=19 Identities=53% Similarity=0.669 Sum_probs=12.4
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9982799999689998981
Q 000860 2 TLLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~ 20 (1250)
.+|+||.|||||||...|+
T Consensus 5 v~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999488980999999999
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.12 E-value=0.0025 Score=34.23 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++++|++++|||||+|.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.08 E-value=0.014 Score=29.52 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=14.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999699995899999895
Q 000860 690 LTALVGSSGAGKTTLMDVLA 709 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~ 709 (1250)
-+||+|..|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.05 E-value=0.016 Score=29.24 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999969999589999989599
Q 000860 691 TALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
+.+.||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.01 E-value=0.013 Score=29.74 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.00 E-value=0.014 Score=29.49 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
++|.||+|+|||||++.++-...
T Consensus 32 i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 32 TLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99986999829999999999779
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.98 E-value=0.029 Score=27.52 Aligned_cols=34 Identities=29% Similarity=0.233 Sum_probs=26.7
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 21003899957739999969999589999989599
Q 000860 677 LLSNVSGIFSPGVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 677 iL~~vs~~~~~G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
-+|. ++..-.|.-+.|.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.98 E-value=0.016 Score=29.18 Aligned_cols=19 Identities=32% Similarity=0.686 Sum_probs=10.8
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9827999996899989819
Q 000860 3 LLLGPPGSGKSTLLLALAG 21 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~G 21 (1250)
+++|++|+|||||++.+.+
T Consensus 6 ~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 6 IILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHC
T ss_conf 9999999698999999970
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.98 E-value=0.014 Score=29.47 Aligned_cols=43 Identities=26% Similarity=0.478 Sum_probs=31.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCCCCEEEEECCC
Q ss_conf 998279999968999898199899986014999889205743311227865654
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQT 55 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~~~~~~~yv~Q~ 55 (1250)
.+++||+|+|||-|.+.|++.++- -=+.+++... ...|||+.+
T Consensus 52 ILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~f------TeaGYvG~D 94 (443)
T d1g41a_ 52 ILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKF------TEVGYVGKE 94 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGG------C----CCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEE------EECCEEECC
T ss_conf 799899998899999999987389-----8898625511------411111044
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.97 E-value=0.026 Score=27.86 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=25.3
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995773999996999958999998959
Q 000860 683 GIFSPGVLTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 683 ~~~~~G~~~~i~G~sGsGKsTLl~~l~g 710 (1250)
+-+++|.++-+.||+|+|||||.--++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.94 E-value=0.014 Score=29.56 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++++|++|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.93 E-value=0.015 Score=29.40 Aligned_cols=23 Identities=52% Similarity=0.853 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
..+.||+|+||||+.+++++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.93 E-value=0.013 Score=29.71 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.89 E-value=0.013 Score=29.65 Aligned_cols=20 Identities=40% Similarity=0.451 Sum_probs=17.6
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 99982799999689998981
Q 000860 1 MTLLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~ 20 (1250)
+.+|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.88 E-value=0.02 Score=28.64 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+++|++|+|||||++.+.+..
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999919899999996199
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.88 E-value=0.023 Score=28.15 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=21.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7399999699995899999895999
Q 000860 688 GVLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 688 G~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
...+.|.||+|+||||+++.++...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8816888989998999999999997
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.85 E-value=0.013 Score=29.76 Aligned_cols=23 Identities=43% Similarity=0.780 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
..+.||+|+|||+|.++++++..
T Consensus 44 iLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 44 VLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp EEEBCCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 78878998763047788787718
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.82 E-value=0.02 Score=28.55 Aligned_cols=22 Identities=50% Similarity=0.979 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
..+-||+|+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.78 E-value=0.027 Score=27.75 Aligned_cols=25 Identities=40% Similarity=0.525 Sum_probs=19.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7739999969999589999989599
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
+..+++++||+|+||||.+-=||.+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999889999999999
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.75 E-value=0.02 Score=28.62 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998279999968999898199899
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDG 25 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~~ 25 (1250)
.+|.||+|+||||+++.++..+..
T Consensus 46 lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 46 ATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 688898999899999999999754
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=93.75 E-value=0.015 Score=29.36 Aligned_cols=19 Identities=32% Similarity=0.365 Sum_probs=10.7
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9827999996899989819
Q 000860 3 LLLGPPGSGKSTLLLALAG 21 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~G 21 (1250)
+++||.++|||||++.|++
T Consensus 7 ~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 7 GTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHH
T ss_conf 9995889809999999999
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.017 Score=29.04 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=12.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+++|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997998999999999809
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.71 E-value=0.024 Score=28.05 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9982799999689998981
Q 000860 2 TLLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~ 20 (1250)
.+++|++|+|||||++.+.
T Consensus 5 v~liG~~~vGKSsLi~rl~ 23 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYC 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999989959899999998
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.69 E-value=0.027 Score=27.80 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+++|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.68 E-value=0.0083 Score=30.95 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.01 Score=30.44 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=23.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 73999996999958999998959999
Q 000860 688 GVLTALVGSSGAGKTTLMDVLAGRKT 713 (1250)
Q Consensus 688 G~~~~i~G~sGsGKsTLl~~l~g~~~ 713 (1250)
+..++|-|+.||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.66 E-value=0.024 Score=28.12 Aligned_cols=23 Identities=43% Similarity=0.778 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
..+.||+|+|||++.++++.+..
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHC
T ss_conf 68766998883089999998748
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.65 E-value=0.019 Score=28.73 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=21.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9998279999968999898199899
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLDG 25 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~~ 25 (1250)
+.+|+||-++|||||||.|.|...+
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~~~ 58 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKKKG 58 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCSSC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCCC
T ss_conf 9998899999799999998099878
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.65 E-value=0.02 Score=28.64 Aligned_cols=20 Identities=35% Similarity=0.699 Sum_probs=11.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99996999958999998959
Q 000860 691 TALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g 710 (1250)
++++|++|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999098999999982
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.61 E-value=0.021 Score=28.44 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=36.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99677883999999999999999999998628988999806898899996203015323958999088986504699896
Q 000860 819 NPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYF 898 (1250)
Q Consensus 819 ~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~yf 898 (1250)
+.+++++||.-. +.......+...+... ......++++++.+. +... +.+. -.++.+.++.. +++..+.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~-~~~~~~i~~~~~~~~-i~~~-----l~sr-~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELY-SNSTRFAFACNQSNK-IIEP-----LQSQ-CAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHT-TTTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCC-CCCEEEEECCCCHHH-HHHH-----HHHH-HHHHHHCCCCH--HHHHHHH
T ss_conf 359999824432-3215778775201123-333366531474302-1067-----8877-77765313322--4567888
Q ss_pred HH
Q ss_conf 21
Q 000860 899 QG 900 (1250)
Q Consensus 899 ~~ 900 (1250)
..
T Consensus 170 ~~ 171 (224)
T d1sxjb2 170 LQ 171 (224)
T ss_dssp HH
T ss_pred HH
T ss_conf 77
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.60 E-value=0.03 Score=27.52 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7739999969999589999989599
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
|...+.++||+|+|||.|.+.||..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7658999778750069999999863
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.029 Score=27.58 Aligned_cols=22 Identities=50% Similarity=0.744 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+++|++|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998989939999999981885
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.53 E-value=0.024 Score=28.09 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.52 E-value=0.031 Score=27.38 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=23.9
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 95773999996999958999998959
Q 000860 685 FSPGVLTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 685 ~~~G~~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.+||.++++-|+=||||||+.+.++.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79982999966877658899999876
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.52 E-value=0.017 Score=28.97 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+++|++|+|||||++.+.+..
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~~ 28 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRNE 28 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999909899999998299
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.51 E-value=0.025 Score=27.95 Aligned_cols=23 Identities=52% Similarity=0.894 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.++.||+|+|||++.++|+.+..
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 88766898883599999998739
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.50 E-value=0.02 Score=28.63 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
++.|.||+|||||||+.-++....
T Consensus 25 v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 25 ITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999995899999999999999998
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.48 E-value=0.023 Score=28.22 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.++++|++|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.47 E-value=0.026 Score=27.88 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=20.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7739999969999589999989599
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
...+++++||+|+||||.+-=||.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9989999899999989999999999
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.47 E-value=0.027 Score=27.80 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.46 E-value=0.037 Score=26.89 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=15.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.+||+|.+.+|||||+++|++
T Consensus 12 kiGivG~Pn~GKSTlfnalT~ 32 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITK 32 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 799978999989999999977
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.43 E-value=0.023 Score=28.22 Aligned_cols=19 Identities=42% Similarity=0.749 Sum_probs=9.4
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999699995899999895
Q 000860 691 TALVGSSGAGKTTLMDVLA 709 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~ 709 (1250)
++++|.+|+|||||++.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~ 23 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYV 23 (184)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999919899999997
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.43 E-value=0.025 Score=27.97 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.8
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995773999996999958999998959
Q 000860 683 GIFSPGVLTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 683 ~~~~~G~~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.-+-.|+..+|.|++|+|||+|+..++.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5645787556867999887899999999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.42 E-value=0.02 Score=28.55 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=17.7
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 99982799999689998981
Q 000860 1 MTLLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~ 20 (1250)
+.+|.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.41 E-value=0.016 Score=29.16 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.41 E-value=0.02 Score=28.53 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
+.|+|-+.+|||||+++|++-.
T Consensus 13 iGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 13 TGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp EEEEECSSSSHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9997899998999999997789
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.35 E-value=0.021 Score=28.45 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=19.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
+.+++||+|+||||.+--|+-.+.
T Consensus 8 vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 8 VVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999988999999999999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.31 E-value=0.028 Score=27.67 Aligned_cols=21 Identities=43% Similarity=0.708 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+++|.+|+|||||++.+++.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.31 E-value=0.028 Score=27.66 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=12.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.++++|.+|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.30 E-value=0.035 Score=27.06 Aligned_cols=19 Identities=37% Similarity=0.712 Sum_probs=9.9
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999699995899999895
Q 000860 691 TALVGSSGAGKTTLMDVLA 709 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~ 709 (1250)
++++|++|+|||||++-+.
T Consensus 9 I~vvG~~~vGKSSli~~~~ 27 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYV 27 (174)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999979999999998
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.28 E-value=0.022 Score=28.29 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+++||+|+||||.+--|+-++.
T Consensus 14 i~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999988999999999999
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.28 E-value=0.022 Score=28.28 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=18.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99982799999689998981998
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~ 23 (1250)
+..|-|++|||||||...|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.025 Score=27.98 Aligned_cols=18 Identities=44% Similarity=0.850 Sum_probs=9.2
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 982799999689998981
Q 000860 3 LLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~ 20 (1250)
+++|++|+|||||++.+.
T Consensus 7 vvvG~~~vGKTsli~r~~ 24 (173)
T d2a5ja1 7 IIIGDTGVGKSCLLLQFT 24 (173)
T ss_dssp EEESSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999999939999999996
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.24 E-value=0.023 Score=28.16 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=18.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999969999589999989599
Q 000860 689 VLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 689 ~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+++++||+|+||||.+-=||.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999989999999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.23 E-value=0.021 Score=28.46 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+++|.+|+|||||++.+.+..
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~~ 26 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNKK 26 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999919899999997198
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.036 Score=27.01 Aligned_cols=21 Identities=48% Similarity=0.651 Sum_probs=11.6
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 982799999689998981998
Q 000860 3 LLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~G~~ 23 (1250)
+++|.+|+|||||++.+.+..
T Consensus 7 ~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 7 VLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEECCTTSSHHHHHHHHHCCC
T ss_pred EEECCCCCCHHHHHHHHHHCC
T ss_conf 999989929999999997286
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.21 E-value=0.03 Score=27.52 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=10.4
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9827999996899989819
Q 000860 3 LLLGPPGSGKSTLLLALAG 21 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~G 21 (1250)
+++|++|+|||||++.+.+
T Consensus 9 ~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 9 VLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEESTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999999198999999972
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=0.021 Score=28.42 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+.++|++|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.15 E-value=0.032 Score=27.28 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+++|++.+|||||++.|+|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99993458849999999970344
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.032 Score=27.26 Aligned_cols=22 Identities=41% Similarity=0.759 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+.++|.+|+|||||++.+.+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998992999999999728
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.04 Score=26.69 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+++||+|+||||.+--|+-++.
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999998999999999999
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=93.13 E-value=0.029 Score=27.60 Aligned_cols=18 Identities=44% Similarity=0.460 Sum_probs=8.9
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 982799999689998981
Q 000860 3 LLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~ 20 (1250)
+++||+.+|||||++.|+
T Consensus 13 ~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 13 LTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999378989899999999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.10 E-value=0.035 Score=27.07 Aligned_cols=20 Identities=50% Similarity=0.803 Sum_probs=9.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99996999958999998959
Q 000860 691 TALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g 710 (1250)
++|-|.-||||||+++.|..
T Consensus 3 I~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99989987899999999999
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.09 E-value=0.027 Score=27.72 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+||+|.+.+|||||+|+|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.09 E-value=0.019 Score=28.67 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999988733
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.07 E-value=0.02 Score=28.58 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+++||+|+||||.+--|+-.+.
T Consensus 15 i~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp EEEECSCCC----HHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999998999999999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.07 E-value=0.032 Score=27.31 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=10.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999699995899999895
Q 000860 691 TALVGSSGAGKTTLMDVLA 709 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~ 709 (1250)
++++|+.|+|||||++.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~ 27 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFS 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999909899999996
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.06 E-value=0.019 Score=28.67 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+++|++|+|||||++.+.+..
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~~ 41 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIGE 41 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCSE
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999998899998873387
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.04 E-value=0.012 Score=29.99 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=14.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
-+.|.|+.|+|||||.+.+++..
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iL 52 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALL 52 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 08998899852999999998737
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.04 E-value=0.029 Score=27.60 Aligned_cols=72 Identities=11% Similarity=0.134 Sum_probs=36.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99677883999999999999999999998628988999806898899996203015323958999088986504699896
Q 000860 819 NPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYF 898 (1250)
Q Consensus 819 ~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~yf 898 (1250)
+.+++++||.- .+.......+.+.+.... ....++++++++. .+... +.++ -....+.++. ..++..+.
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~-~~~~~~~~~~~~~-~i~~~-----i~sr-~~~i~~~~~~--~~~i~~~l 167 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYT-KNTRFCVLANYAH-KLTPA-----LLSQ-CTRFRFQPLP--QEAIERRI 167 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCC--HHHHHHHH
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCC-CCEEECCCCCCHH-HHHHH-----HHHH-HHHHCCCCCC--CCCCCCCC
T ss_conf 71899996632-000237899998863112-0023201267087-75999-----9988-7540123565--20001102
Q ss_pred HHC
Q ss_conf 218
Q 000860 899 QGL 901 (1250)
Q Consensus 899 ~~~ 901 (1250)
..+
T Consensus 168 ~~I 170 (227)
T d1sxjc2 168 ANV 170 (227)
T ss_dssp HHH
T ss_pred CCC
T ss_conf 122
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.99 E-value=0.029 Score=27.55 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+++|++|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998993999999999719
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.94 E-value=0.021 Score=28.39 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=11.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.++++|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.94 E-value=0.026 Score=27.91 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.021 Score=28.44 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+|+|++|+|||||++.+.+.
T Consensus 7 v~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 7 IAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998992989999999719
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.92 E-value=0.034 Score=27.10 Aligned_cols=21 Identities=43% Similarity=0.673 Sum_probs=12.5
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 982799999689998981998
Q 000860 3 LLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+-||+|+||||+.++++.++
T Consensus 40 ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 40 IISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEECSTTSSHHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHH
T ss_conf 998899987054699999997
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.92 E-value=0.027 Score=27.71 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9982799999689998981
Q 000860 2 TLLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~ 20 (1250)
.+++||+++|||||+..|+
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999447999999999999
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.91 E-value=0.028 Score=27.70 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+.++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.03 Score=27.49 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=13.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.++++|.+|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.036 Score=26.99 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+++|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999739
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.88 E-value=0.025 Score=27.94 Aligned_cols=73 Identities=12% Similarity=0.062 Sum_probs=40.0
Q ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHHHH
Q ss_conf 19967788399999999999999999999862898899980689889999620301532395899908898650469989
Q 000860 818 ANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDY 897 (1250)
Q Consensus 818 ~~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~y 897 (1250)
.+.+++++||.-. |.......+.+.+... .....+|++++++....-..-+|. ..+...++.. .++.++
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~-~~~~~~Il~tn~~~~i~~~l~sR~-------~~i~~~~~~~--~~~~~~ 198 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMSPIIAPIKSQC-------LLIRCPAPSD--SEISTI 198 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSCSSCHHHHTTS-------EEEECCCCCH--HHHHHH
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCC-CCCCCCEEEECCCCCHHHHHHCCH-------HEEEECCCCH--HHHHHH
T ss_conf 8724999424333-4543111221002213-566430001021110025442100-------0243035330--468999
Q ss_pred HHHC
Q ss_conf 6218
Q 000860 898 FQGL 901 (1250)
Q Consensus 898 f~~~ 901 (1250)
.+.+
T Consensus 199 l~~i 202 (252)
T d1sxje2 199 LSDV 202 (252)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.86 E-value=0.023 Score=28.16 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.85 E-value=0.023 Score=28.14 Aligned_cols=22 Identities=45% Similarity=0.705 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+|+|+.|+|||||++.+.+..
T Consensus 9 ivvvG~~~vGKTsli~~l~~~~ 30 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDDT 30 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999909899999996198
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.82 E-value=0.029 Score=27.59 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
++||.|+.||||||..+.+...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.82 E-value=0.041 Score=26.61 Aligned_cols=18 Identities=22% Similarity=0.529 Sum_probs=9.4
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 982799999689998981
Q 000860 3 LLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~ 20 (1250)
+++|.+|+|||||++.+.
T Consensus 6 ~liG~~~vGKTsLl~~~~ 23 (165)
T d1z06a1 6 IVIGDSNVGKTCLTYRFC 23 (165)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999999929899999997
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.78 E-value=0.1 Score=24.11 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=13.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999699995899999895
Q 000860 690 LTALVGSSGAGKTTLMDVLA 709 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~ 709 (1250)
.+.++|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79999899998899999895
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.76 E-value=0.03 Score=27.45 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+++||+|+||||.+--|+..+.
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989999988999999999999
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.74 E-value=0.032 Score=27.26 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+|+|++|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.71 E-value=0.02 Score=28.61 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=11.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99996999958999998959
Q 000860 691 TALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g 710 (1250)
+.++|.+|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999499999999970
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.71 E-value=0.021 Score=28.41 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
++.+.||+|+||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8996789998999999999999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.68 E-value=0.03 Score=27.48 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=20.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
+.+|-|..||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=0.044 Score=26.41 Aligned_cols=19 Identities=26% Similarity=0.552 Sum_probs=9.8
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9827999996899989819
Q 000860 3 LLLGPPGSGKSTLLLALAG 21 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~G 21 (1250)
+++|.+|+|||||++.+.+
T Consensus 9 vviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 9 VVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEECSTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999999799999999974
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.03 Score=27.52 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+.|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.57 E-value=0.029 Score=27.60 Aligned_cols=22 Identities=41% Similarity=0.726 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+++|++|+|||||++.+.+..
T Consensus 10 i~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989908899999997199
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.54 E-value=0.04 Score=26.73 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.++.|+||+||||+.-.|..+-
T Consensus 17 vl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 17 VLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHCC
T ss_conf 9998089999899999999859
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.49 E-value=0.043 Score=26.51 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+++|++|+|||||++.+.+..
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989938899999997199
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.48 E-value=0.043 Score=26.50 Aligned_cols=19 Identities=42% Similarity=0.686 Sum_probs=11.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9982799999689998981
Q 000860 2 TLLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~ 20 (1250)
.+++|++|+|||||++.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~ 26 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFI 26 (174)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999909999999997
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.47 E-value=0.042 Score=26.57 Aligned_cols=23 Identities=43% Similarity=0.865 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
..+-||+|+||||+..+++.++.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.46 E-value=0.049 Score=26.13 Aligned_cols=18 Identities=39% Similarity=0.704 Sum_probs=9.2
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 982799999689998981
Q 000860 3 LLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~ 20 (1250)
+++|.+|+|||||++-+.
T Consensus 8 ~lvG~~~vGKTsli~rl~ 25 (167)
T d1z0ja1 8 CLLGDTGVGKSSIMWRFV 25 (167)
T ss_dssp EEECCTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999989949999999997
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.45 E-value=0.039 Score=26.74 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++++|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.44 E-value=0.038 Score=26.85 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=15.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99982799999689998981998
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~ 23 (1250)
++.|-|.-|||||||++-++...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.44 E-value=0.038 Score=26.84 Aligned_cols=22 Identities=45% Similarity=0.520 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
+++.|+||+||||+...|..+-
T Consensus 18 vli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 18 VLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9998189999899999999859
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.41 E-value=0.039 Score=26.78 Aligned_cols=21 Identities=33% Similarity=0.552 Sum_probs=10.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.+||+|-+.+|||||+++|++
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~ 24 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTK 24 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 488889999988999999977
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.41 E-value=0.048 Score=26.20 Aligned_cols=21 Identities=52% Similarity=0.691 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
-++|+|..|+|||||...|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999994889809999999999
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.41 E-value=0.026 Score=27.84 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+++|.+|+|||||++.+++..
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~~ 30 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSEDA 30 (173)
T ss_dssp EEEECCCCC-------------
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999949999999997098
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.41 E-value=0.034 Score=27.13 Aligned_cols=37 Identities=30% Similarity=0.358 Sum_probs=23.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEE
Q ss_conf 99827999996899989819989998601499988920
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWE 39 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~ 39 (1250)
..+.|.|||||||+.+.|.-++... ...-.+.++|..
T Consensus 27 IwltGlsGsGKTTia~~L~~~l~~~-~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 27 IWLTGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDN 63 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCHH
T ss_conf 9998999999899999999887774-275089975367
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.40 E-value=0.041 Score=26.61 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++++|.+|+|||||++-+.+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.39 E-value=0.028 Score=27.67 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=10.0
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9827999996899989819
Q 000860 3 LLLGPPGSGKSTLLLALAG 21 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~G 21 (1250)
+++|++|+|||||++.+++
T Consensus 7 ~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 7 VLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEECTTSSHHHHHHTTC-
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999999088999999984
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.38 E-value=0.037 Score=26.94 Aligned_cols=15 Identities=53% Similarity=0.793 Sum_probs=6.0
Q ss_pred EEECCCCCCHHHHHH
Q ss_conf 982799999689998
Q 000860 3 LLLGPPGSGKSTLLL 17 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~ 17 (1250)
+|+|++|||||+++.
T Consensus 54 ~I~G~tGsGKT~~l~ 68 (433)
T d1e9ra_ 54 LVNGATGTGKSVLLR 68 (433)
T ss_dssp EEEECTTSSHHHHHH
T ss_pred EEEECCCCCHHHHHH
T ss_conf 999079996899999
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.34 E-value=0.03 Score=27.47 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=13.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.+.++|++|+|||||++.+.+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999878999999844
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.046 Score=26.29 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.31 E-value=0.037 Score=26.92 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+.++|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.31 E-value=0.028 Score=27.67 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+++|++|+|||||++.+.+...
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999878999999844888
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=92.29 E-value=0.043 Score=26.49 Aligned_cols=27 Identities=26% Similarity=0.170 Sum_probs=22.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 577399999699995899999895999
Q 000860 686 SPGVLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 686 ~~G~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
+.+..+.+.||+|+|||++.++|++..
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 976769998999988899999999985
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.27 E-value=0.044 Score=26.46 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+++|++|+|||||++.+...
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.25 E-value=0.024 Score=28.07 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=18.6
Q ss_pred EEECCCCCCHHHHHHHHHCCCC
Q ss_conf 9827999996899989819989
Q 000860 3 LLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+.||+|+||||+++.++..+.
T Consensus 50 ~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 50 GSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp ECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
T ss_conf 9678999899999999999987
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.18 E-value=0.036 Score=26.99 Aligned_cols=19 Identities=37% Similarity=0.579 Sum_probs=10.6
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9827999996899989819
Q 000860 3 LLLGPPGSGKSTLLLALAG 21 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~G 21 (1250)
+++|.+|+|||||++.+.+
T Consensus 7 vlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 7 VLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEECCTTSCHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999999398999999982
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.18 E-value=0.051 Score=26.06 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=12.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.++++|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.16 E-value=0.043 Score=26.52 Aligned_cols=22 Identities=45% Similarity=0.711 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
..+.||+|+||||+..+++-.+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=0.031 Score=27.41 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++++|.+|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.08 E-value=0.057 Score=25.74 Aligned_cols=19 Identities=16% Similarity=0.073 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9982799999689998981
Q 000860 2 TLLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~ 20 (1250)
.+|+||.|||||||...|+
T Consensus 9 i~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999589899899999999
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.06 E-value=0.074 Score=25.03 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=22.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 999577399999699995899999895999
Q 000860 683 GIFSPGVLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 683 ~~~~~G~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
...+.| .+.+.||+|+|||.|.++|++..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 436886-38887799850889999999986
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.028 Score=27.64 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.03 E-value=0.036 Score=27.01 Aligned_cols=23 Identities=39% Similarity=0.377 Sum_probs=19.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99982799999689998981998
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~ 23 (1250)
++.|.||+||||||+..-++-..
T Consensus 36 ~~li~G~pGsGKT~l~lq~~~~~ 58 (251)
T d1szpa2 36 ITELFGEFRTGKSQLCHTLAVTC 58 (251)
T ss_dssp EEEEEESTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998389998899999999986
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.99 E-value=0.061 Score=25.56 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=13.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+++|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.95 E-value=0.057 Score=25.71 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=10.6
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999969999589999989
Q 000860 690 LTALVGSSGAGKTTLMDVL 708 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l 708 (1250)
.+.++|.+|+|||||++-+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 9999989999989999988
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.94 E-value=0.062 Score=25.52 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.+.++|.+|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.93 E-value=0.061 Score=25.57 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=10.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999699995899999895
Q 000860 690 LTALVGSSGAGKTTLMDVLA 709 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~ 709 (1250)
.+.++|.+|+|||||++.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~ 25 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999989958899999997
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.91 E-value=0.03 Score=27.46 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999699995899999895
Q 000860 691 TALVGSSGAGKTTLMDVLA 709 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~ 709 (1250)
++++|.-++|||||+..|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHH
T ss_conf 9999527989999999999
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.90 E-value=0.051 Score=26.02 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.+.++|.+|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.90 E-value=0.034 Score=27.14 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.++++|.+|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.89 E-value=0.052 Score=26.01 Aligned_cols=21 Identities=29% Similarity=0.533 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.++++|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.88 E-value=0.069 Score=25.22 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
++||.|+-||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999889999999998
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.86 E-value=0.058 Score=25.69 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=12.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.++|+|.+|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.82 E-value=0.049 Score=26.14 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=13.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+++|++|+|||||++-+.+.
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.047 Score=26.23 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+++|.+|+|||||++-+.+.
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997996989999999739
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.066 Score=25.36 Aligned_cols=19 Identities=47% Similarity=0.667 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999699995899999895
Q 000860 691 TALVGSSGAGKTTLMDVLA 709 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~ 709 (1250)
++++|++|+|||||++.+.
T Consensus 9 i~vvG~~~vGKTsli~~~~ 27 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFK 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999999929999999997
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.73 E-value=0.043 Score=26.48 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.++++|.+|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.69 E-value=0.067 Score=25.30 Aligned_cols=18 Identities=44% Similarity=0.752 Sum_probs=10.2
Q ss_pred EEECCCCCCHHHHHHHHH
Q ss_conf 982799999689998981
Q 000860 3 LLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~ 20 (1250)
+++|.+|+|||||++-+.
T Consensus 10 ~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 10 VLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEECSTTSSHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
T ss_conf 999999949899999998
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.61 E-value=0.23 Score=21.95 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=27.4
Q ss_pred CCCCEEEEECCCCCCCH----HHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 49807564179856027----98999999999987708989999951899
Q 000860 162 GPRKTLFMDEISTGLDS----STTFQIVKCVRNFVHQMDATALMALLQPP 207 (1250)
Q Consensus 162 ~~~~IllLDEpTSgLDs----~s~~~i~~~L~~l~~~~g~TvI~~i~q~~ 207 (1250)
.+++++++|.-+.-.+. .........+....++.+.+++++.|+..
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIE 173 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 31222002078899876057267899999999999863971688421025
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.55 E-value=0.056 Score=25.78 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=12.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.++++|.+|+|||||++.+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999971
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.52 E-value=0.054 Score=25.90 Aligned_cols=19 Identities=37% Similarity=0.392 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9982799999689998981
Q 000860 2 TLLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~ 20 (1250)
.+++||+++|||||...|+
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999478998999999999
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.50 E-value=0.05 Score=26.11 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+++|++|+|||||++.+.+..
T Consensus 8 i~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989978999999997197
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.48 E-value=0.058 Score=25.69 Aligned_cols=100 Identities=7% Similarity=0.027 Sum_probs=59.4
Q ss_pred HHCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH-HHHCCEEEEECCCEEEEECCCCCCCHH-
Q ss_conf 5199677883999999-9999999999999986289889998068988999-962030153239589990889865046-
Q 000860 817 VANPSIIFMDEPTSGL-DARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIF-EAFDELLLMKRGGRVIYGGKLGVHSQI- 893 (1250)
Q Consensus 817 ~~~p~il~lDEpTsgL-D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~-~~~d~v~~l~~gg~~~~~g~~~~~~~~- 893 (1250)
+.+.+++++|+--.=. +......+..++....+.|+.+|+++..+..++- ..-|-.-.|. +|.++.-.|.+.....
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~-~g~~~~i~p~d~~~~~i 173 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFE-GGILVEIELDNKTRFKI 173 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHH-TSEEEECCCCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCHHHHHHHH-CCEEEEECCCCHHHHHH
T ss_conf 76213010112655058657788999999987631663899548751001343267888861-85689978882799999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHC
Q ss_conf 9989621899999999999320465406
Q 000860 894 MIDYFQGLDGIPLIPSGYNPATWVLEVT 921 (1250)
Q Consensus 894 ~~~yf~~~~~~~~~p~~~npad~~~~~~ 921 (1250)
+..++...| ..++ .+.++|+++-+
T Consensus 174 L~~~a~~rg--l~l~--~~v~~yl~~~~ 197 (213)
T d1l8qa2 174 IKEKLKEFN--LELR--KEVIDYLLENT 197 (213)
T ss_dssp HHHHHHHTT--CCCC--HHHHHHHHHHC
T ss_pred HHHHHHHCC--CCCC--HHHHHHHHHHC
T ss_conf 999999829--9999--99999999856
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.45 E-value=0.058 Score=25.68 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=9.6
Q ss_pred EEECCCCCCHHHHHHHHHC
Q ss_conf 9827999996899989819
Q 000860 3 LLLGPPGSGKSTLLLALAG 21 (1250)
Q Consensus 3 aIiGpsGSGKSTLL~~L~G 21 (1250)
+++|.+|+|||||++.+.+
T Consensus 8 ~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 8 VVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEECCTTSSHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHH
T ss_conf 9999899598999999970
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.44 E-value=0.085 Score=24.64 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=25.8
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 99957739999969999589999989599
Q 000860 683 GIFSPGVLTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 683 ~~~~~G~~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
|-++.|.++-+-||+|+|||||...++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98667547898058765227999999999
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.43 E-value=0.068 Score=25.25 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=24.0
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995773999996999958999998959
Q 000860 683 GIFSPGVLTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 683 ~~~~~G~~~~i~G~sGsGKsTLl~~l~g 710 (1250)
+-++.|.++-+.||+|+|||||.-.++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9866633699964887488999999999
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.43 E-value=0.048 Score=26.22 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.+.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.43 E-value=0.06 Score=25.58 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.+.++|.+|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.41 E-value=0.042 Score=26.57 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=11.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999699995899999895
Q 000860 691 TALVGSSGAGKTTLMDVLA 709 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~ 709 (1250)
++|+|.-|+|||||++.|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999688886999999999
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.32 E-value=0.063 Score=25.47 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+++|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995889999999729
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.30 E-value=0.062 Score=25.49 Aligned_cols=19 Identities=47% Similarity=0.639 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9982799999689998981
Q 000860 2 TLLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~ 20 (1250)
.+++|++|+|||||++-+.
T Consensus 9 illlG~~~vGKTsll~~~~ 27 (221)
T d1azta2 9 LLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999899998899999895
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.29 E-value=0.068 Score=25.24 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=40.0
Q ss_pred HHHCCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH-HHCCCEEEECCCEEEEECCHHH
Q ss_conf 87349807564179856-027989999999999877089899999518993478-2012468843980785548213
Q 000860 159 MIVGPRKTLFMDEISTG-LDSSTTFQIVKCVRNFVHQMDATALMALLQPPPETF-ELFDDLVLLSDGYLVYQGPRAE 233 (1250)
Q Consensus 159 aL~~~~~IllLDEpTSg-LDs~s~~~i~~~L~~l~~~~g~TvI~~i~q~~~e~~-~~fD~I~vL~~G~iv~~G~~~~ 233 (1250)
..+...+++++||.-.= -+......++..+..... .++.+|++...+..+.- ..-|-.-.+..|-++.-.|.++
T Consensus 93 ~~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p~d~ 168 (213)
T d1l8qa2 93 NMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNK 168 (213)
T ss_dssp HHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCCCHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCCCHHCCCCCHHHHHHHHCCEEEEECCCCH
T ss_conf 987621301011265505865778899999998763-1663899548751001343267888861856899788827
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.22 E-value=0.067 Score=25.32 Aligned_cols=10 Identities=30% Similarity=0.322 Sum_probs=3.5
Q ss_pred EEEEECCCCC
Q ss_conf 7564179856
Q 000860 166 TLFMDEISTG 175 (1250)
Q Consensus 166 IllLDEpTSg 175 (1250)
++++=-+=||
T Consensus 53 ~~I~G~tGsG 62 (433)
T d1e9ra_ 53 LLVNGATGTG 62 (433)
T ss_dssp EEEEECTTSS
T ss_pred EEEEECCCCC
T ss_conf 8999079996
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.19 E-value=0.059 Score=25.62 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+|+|.+|+|||||++.+....
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~~ 33 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYANDA 33 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999999989999999996499
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.12 E-value=0.053 Score=25.93 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|-|+.||||||+++.|.-.+.
T Consensus 5 IviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989988879999999999999
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.069 Score=25.21 Aligned_cols=20 Identities=35% Similarity=0.703 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99827999996899989819
Q 000860 2 TLLLGPPGSGKSTLLLALAG 21 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G 21 (1250)
.+++|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.05 E-value=0.077 Score=24.93 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=11.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99827999996899989819
Q 000860 2 TLLLGPPGSGKSTLLLALAG 21 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G 21 (1250)
.+++|++|+|||||++.+.+
T Consensus 6 vvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999699999999971
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.04 E-value=0.061 Score=25.54 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
+++.|+||+||||+.-.|..+
T Consensus 18 vli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 18 VLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHC
T ss_conf 999808999999999999984
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.00 E-value=0.07 Score=25.20 Aligned_cols=19 Identities=53% Similarity=0.676 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9982799999689998981
Q 000860 2 TLLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~ 20 (1250)
.+++|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999899999899999884
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.97 E-value=0.071 Score=25.16 Aligned_cols=25 Identities=40% Similarity=0.545 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999996999958999998959999
Q 000860 689 VLTALVGSSGAGKTTLMDVLAGRKT 713 (1250)
Q Consensus 689 ~~~~i~G~sGsGKsTLl~~l~g~~~ 713 (1250)
-++.|.|.-|||||||++-+.....
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~~ 28 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQH 28 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8899864888999999999985678
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.95 E-value=0.088 Score=24.56 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.+|=|+-||||||+++.|.-.+
T Consensus 5 IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 5 LSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998998885999999999987
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=90.94 E-value=0.061 Score=25.54 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=27.9
Q ss_pred HCCCCEEEEECCCCCCCH--------HHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 349807564179856027--------98999999999987708989999951899
Q 000860 161 VGPRKTLFMDEISTGLDS--------STTFQIVKCVRNFVHQMDATALMALLQPP 207 (1250)
Q Consensus 161 ~~~~~IllLDEpTSgLDs--------~s~~~i~~~L~~l~~~~g~TvI~~i~q~~ 207 (1250)
-.+++++++|-. +-+++ .....+++.|+.++++.+.+++++. |+.
T Consensus 145 ~~~~~~vvID~l-~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~-q~~ 197 (277)
T d1cr2a_ 145 GLGCDVIILDHI-SIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVIC-HLK 197 (277)
T ss_dssp TTCCSEEEEEEE-EC----------CHHHHHHHHHHHHHHHHHCCEEEEEE-ECC
T ss_pred CCCCCEEEECCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEC-CCC
T ss_conf 367625997054-21203465443067789999999997650165520310-356
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.89 E-value=0.055 Score=25.84 Aligned_cols=20 Identities=45% Similarity=0.605 Sum_probs=17.0
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 99982799999689998981
Q 000860 1 MTLLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~ 20 (1250)
++.|.||+||||||+.--++
T Consensus 38 ~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 38 ITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998589898899999999
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.86 E-value=0.11 Score=23.92 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=24.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 9995773999996999958999998959
Q 000860 683 GIFSPGVLTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 683 ~~~~~G~~~~i~G~sGsGKsTLl~~l~g 710 (1250)
..+-.|+..+|.|++|+|||+|+.-++.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5636788777667999898999999999
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=90.72 E-value=0.046 Score=26.31 Aligned_cols=55 Identities=11% Similarity=0.107 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCC-------CCCHHHH-HHHHHHHHHH---H-HCCCEEEEEECC
Q ss_conf 89899999999951996778839999-------9999999-9999999998---6-289889998068
Q 000860 805 EQRKRLTIAVELVANPSIIFMDEPTS-------GLDARAA-AIVMRAVRNT---V-DTGRTVVCTIHQ 860 (1250)
Q Consensus 805 Gqr~r~~ia~~l~~~p~il~lDEpTs-------gLD~~~~-~~i~~~l~~~---~-~~g~tvi~~~H~ 860 (1250)
+|++--.+-.. +++|.|+|+||--+ +.+.... ..+-+.|.++ . ..+.-||.++..
T Consensus 169 ~e~~~~~~f~~-a~~~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~ 235 (321)
T d1w44a_ 169 FNVFVDDIARA-MLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (321)
T ss_dssp HHHHHHHHHHH-HHHCSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHHHH-HHHCCEEEEEHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 78999999999-86265897410122212345678987413345156652035566788499983797
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.69 E-value=0.069 Score=25.23 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+++|.+|+|||||++.+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999995989999999729
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.67 E-value=0.088 Score=24.58 Aligned_cols=21 Identities=43% Similarity=0.607 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.+.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.62 E-value=0.071 Score=25.16 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++++|.+|+|||||++-+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996999999999719
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.59 E-value=0.061 Score=25.57 Aligned_cols=23 Identities=35% Similarity=0.270 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|-|+.||||||+.+.|...+.
T Consensus 6 I~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99989988899999999999998
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.57 E-value=0.1 Score=24.20 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=13.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+++|.+|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.53 E-value=0.1 Score=24.11 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
-++++|..++|||||++.|..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999994789849999999999
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.38 E-value=0.087 Score=24.60 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999969999589999989599
Q 000860 690 LTALVGSSGAGKTTLMDVLAGR 711 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~ 711 (1250)
.++++|.+|+|||||++-+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.34 E-value=0.066 Score=25.36 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99982799999689998981998
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~ 23 (1250)
+|.|.|++|+||||+..-++-..
T Consensus 36 l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 36 VTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999179999899999999999
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.21 E-value=0.14 Score=23.37 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|+|++.+|||||++.|+|...
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 99997248869999999970412
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=90.20 E-value=0.1 Score=24.12 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
-+..+||+|+|||-|.+.||...
T Consensus 70 niLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 70 NILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
T ss_conf 32441899863789999998644
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=90.09 E-value=0.11 Score=24.04 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=21.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 77399999699995899999895999
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
|...+.++||+|+|||.|.+.|+...
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 76699997888624899999999983
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.08 E-value=0.095 Score=24.35 Aligned_cols=30 Identities=27% Similarity=0.542 Sum_probs=22.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEEC
Q ss_conf 99827999996899989819989998601499988
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYN 36 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~in 36 (1250)
.+++||+|+|||.|.+.|+-.+. .--+.+|
T Consensus 55 ~lf~Gp~GvGKT~lak~la~~l~-----~~~i~~d 84 (315)
T d1r6bx3 55 FLFAGPTGVGKTEVTVQLSKALG-----IELLRFD 84 (315)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT-----CEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHCC-----CCEEEEC
T ss_conf 99977875006999999986336-----7706741
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=90.07 E-value=0.074 Score=25.04 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=10.7
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 998279999968999
Q 000860 2 TLLLGPPGSGKSTLL 16 (1250)
Q Consensus 2 taIiGpsGSGKSTLL 16 (1250)
..|.|++||||||.+
T Consensus 17 ~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEECCCTTSCHHHHH
T ss_pred EEEEEECCCCHHHHH
T ss_conf 899962884389999
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.04 E-value=0.12 Score=23.74 Aligned_cols=22 Identities=41% Similarity=0.449 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
+.|+|-+-+|||||+++|++--
T Consensus 5 ~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 5 CGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 8888999998899999997799
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.00 E-value=0.088 Score=24.56 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=18.3
Q ss_pred CEEEECCCCCCHHHHHHHHHC
Q ss_conf 999827999996899989819
Q 000860 1 MTLLLGPPGSGKSTLLLALAG 21 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G 21 (1250)
++.|.||+|||||++..-++.
T Consensus 39 ~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 39 ITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp EEEEECCTTCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999988998878899999999
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=89.93 E-value=0.072 Score=25.09 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=6.2
Q ss_pred EEEECCCCCCHHHH
Q ss_conf 99996999958999
Q 000860 691 TALVGSSGAGKTTL 704 (1250)
Q Consensus 691 ~~i~G~sGsGKsTL 704 (1250)
+.|.|+.||||||.
T Consensus 27 ~lV~g~aGSGKTt~ 40 (318)
T d1pjra1 27 LLIMAGAGSGKTRV 40 (318)
T ss_dssp EEEEECTTSCHHHH
T ss_pred EEEEECCCCCHHHH
T ss_conf 89995298668999
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.71 E-value=0.11 Score=23.99 Aligned_cols=23 Identities=48% Similarity=0.557 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
-..|+|++|.|||++..-|+.+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHH
T ss_conf 96798889886779999999999
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.47 E-value=0.087 Score=24.61 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399999699995899999895999
Q 000860 689 VLTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 689 ~~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
..++|=|+-||||||+++.|+...
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.42 E-value=0.086 Score=24.63 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=20.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
+.++=|+-||||||+.+.|+-.+.
T Consensus 5 ~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 5 LILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989988869999999999997
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.35 E-value=0.1 Score=24.17 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=19.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99982799999689998981998
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~ 23 (1250)
+.+|.|+.||||||..+.|...+
T Consensus 3 iIgiTG~igSGKsTva~~l~e~~ 25 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 99997999988999999999868
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.29 E-value=0.1 Score=24.18 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999827999996899989819989
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
+|.+.||+||||||++--++....
T Consensus 56 itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 56 IVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 899805777478999999999987
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=88.23 E-value=0.16 Score=22.93 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|=|+-|+||||+++.|+....
T Consensus 7 I~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 7 VYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEECSCTTSSHHHHHHHHTC---
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989867789999999999817
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=88.22 E-value=0.08 Score=24.83 Aligned_cols=24 Identities=46% Similarity=0.605 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 998279999968999898199899
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDG 25 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~~ 25 (1250)
+.+.||+|+||||+.+.+++.+++
T Consensus 31 vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 31 VLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 899889985299999999873798
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.20 E-value=0.17 Score=22.72 Aligned_cols=21 Identities=43% Similarity=0.474 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 998279999968999898199
Q 000860 2 TLLLGPPGSGKSTLLLALAGK 22 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~ 22 (1250)
.+++|..|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999999679
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.13 E-value=0.19 Score=22.53 Aligned_cols=20 Identities=45% Similarity=0.536 Sum_probs=13.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99827999996899989819
Q 000860 2 TLLLGPPGSGKSTLLLALAG 21 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G 21 (1250)
.+++|..|+|||||++-+..
T Consensus 5 ivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999888999998840
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=88.02 E-value=0.14 Score=23.24 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=16.8
Q ss_pred CEEEEEECCCCCCHHHHHHH
Q ss_conf 73999996999958999998
Q 000860 688 GVLTALVGSSGAGKTTLMDV 707 (1250)
Q Consensus 688 G~~~~i~G~sGsGKsTLl~~ 707 (1250)
+.++.|.||.|+||||++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHHH
T ss_conf 88599976898875216999
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.83 E-value=0.46 Score=20.09 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 773999996999958999998959
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g 710 (1250)
...+++|.|..|.|||||.+.+..
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 840899977997888999999998
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=87.76 E-value=0.17 Score=22.81 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 773999996999958999998959
Q 000860 687 PGVLTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTLl~~l~g 710 (1250)
|.=-+|++|.-.+|||||++.|.+
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 971899995889809999999999
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=87.69 E-value=0.16 Score=22.92 Aligned_cols=42 Identities=33% Similarity=0.544 Sum_probs=27.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCCCCCCCEEEEECC
Q ss_conf 99827999996899989819989998601499988920574331122786565
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLDGNLNKSGSITYNGWELDEFQVQRASAYIGQ 54 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~~~~~~~G~I~inG~~~~~~~~~~~~~yv~Q 54 (1250)
..++||+|+|||-|.+.|+..++ ..-+.++-.. ....+|++.
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~-----~~~ir~D~s~------~~e~gyvg~ 112 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD-----IPIAISDATS------LTEAGYVGE 112 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEGGG------CC-------
T ss_pred EEEECCCCCCHHHHHHHHHHHCC-----CCEEEHHHHH------CCCCHHHHH
T ss_conf 24418998637899999986443-----5331112220------144316676
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.52 E-value=0.21 Score=22.26 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+++||+|.|||+++..++.+..
T Consensus 42 ~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 42 PLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
T ss_conf 67988898867799999999998
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.35 E-value=0.17 Score=22.84 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.+.++|.+|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=87.07 E-value=0.17 Score=22.78 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9982799999689998981998
Q 000860 2 TLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~ 23 (1250)
.++-|+-||||||+.+.++.-+
T Consensus 36 i~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9996687765889999987642
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=87.06 E-value=0.19 Score=22.54 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
.+.|=|+-|+||||+++.|+...
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998986778999999999981
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=86.87 E-value=0.18 Score=22.68 Aligned_cols=18 Identities=50% Similarity=0.748 Sum_probs=10.0
Q ss_pred CCEEEEEECCCCCCHHHH
Q ss_conf 773999996999958999
Q 000860 687 PGVLTALVGSSGAGKTTL 704 (1250)
Q Consensus 687 ~G~~~~i~G~sGsGKsTL 704 (1250)
.|+.....|.||+|||||
T Consensus 13 ~~~~alfFGLSGTGKTTL 30 (313)
T d2olra1 13 KGDVAVFFGLSGTGKTTL 30 (313)
T ss_dssp TSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCCCCC
T ss_conf 898899970477985602
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.41 E-value=0.22 Score=22.02 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996999958999998959
Q 000860 690 LTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g 710 (1250)
.+.++|..|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999888999998840
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=86.36 E-value=0.3 Score=21.28 Aligned_cols=23 Identities=35% Similarity=0.250 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
..|=|+-|+||||+++.|+..+.
T Consensus 9 I~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 9 IYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988866789999999999865
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=86.31 E-value=0.18 Score=22.63 Aligned_cols=17 Identities=53% Similarity=0.804 Sum_probs=9.9
Q ss_pred CEEEEEECCCCCCHHHH
Q ss_conf 73999996999958999
Q 000860 688 GVLTALVGSSGAGKTTL 704 (1250)
Q Consensus 688 G~~~~i~G~sGsGKsTL 704 (1250)
|+.....|.||+|||||
T Consensus 14 ~~valffGLSGTGKTTL 30 (318)
T d1j3ba1 14 GDVAVFFGLSGTGKTTL 30 (318)
T ss_dssp CCEEEEEECTTSCHHHH
T ss_pred CCEEEEECCCCCCCCCC
T ss_conf 98899973687981422
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.28 E-value=0.25 Score=21.78 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999699995899999895999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
-..++|++|.|||++..-|+.+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 73998358754479999999999
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=86.11 E-value=0.2 Score=22.34 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999699995899999895999
Q 000860 691 TALVGSSGAGKTTLMDVLAGRK 712 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl~~l~g~~ 712 (1250)
..|+|++|.|||+++.-|+.+.
T Consensus 46 ~llvG~~GvGKtaiv~~la~~i 67 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQRI 67 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
T ss_conf 7687999988999999999999
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.85 E-value=0.18 Score=22.62 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9982799999689998981
Q 000860 2 TLLLGPPGSGKSTLLLALA 20 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~ 20 (1250)
.+|+||.|+|||||+..|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999688886999999999
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=85.80 E-value=0.18 Score=22.59 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=11.7
Q ss_pred EEEECCCCCCHHHHHH
Q ss_conf 9982799999689998
Q 000860 2 TLLLGPPGSGKSTLLL 17 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~ 17 (1250)
+.|.|+.||||||.+-
T Consensus 27 ~lV~g~aGSGKTt~l~ 42 (318)
T d1pjra1 27 LLIMAGAGSGKTRVLT 42 (318)
T ss_dssp EEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCHHHHHH
T ss_conf 8999529866899999
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.56 E-value=0.35 Score=20.85 Aligned_cols=72 Identities=13% Similarity=0.237 Sum_probs=36.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99677883999999999999999999998628988999806898899996203015323958999088986504699896
Q 000860 819 NPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYF 898 (1250)
Q Consensus 819 ~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~yf 898 (1250)
+.+++++||.-. |...++..+.+++.+.. .+..+|+++++++. +.. . +.++ =..+..-++.. +++..+.
T Consensus 108 ~~kviIide~d~-l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~~-ll~---t--I~SR-c~~i~~~~~~~--~~~~~~L 176 (207)
T d1a5ta2 108 GAKVVWVTDAAL-LTDAAANALLKTLEEPP-AETWFFLATREPER-LLA---T--LRSR-CRLHYLAPPPE--QYAVTWL 176 (207)
T ss_dssp SCEEEEESCGGG-BCHHHHHHHHHHHTSCC-TTEEEEEEESCGGG-SCH---H--HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CCCEEEECHHHH-HHHHHHHHHHHHHHHHC-CCCEEEEEECCHHH-HHH---H--HCCE-EEEEECCCCCH--HHHHHHH
T ss_conf 640477313442-00001499999998501-11104553068655-103---2--0021-57882689999--9999999
Q ss_pred HHC
Q ss_conf 218
Q 000860 899 QGL 901 (1250)
Q Consensus 899 ~~~ 901 (1250)
+..
T Consensus 177 ~~~ 179 (207)
T d1a5ta2 177 SRE 179 (207)
T ss_dssp HHH
T ss_pred HHC
T ss_conf 974
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.52 E-value=0.34 Score=20.89 Aligned_cols=71 Identities=10% Similarity=0.133 Sum_probs=37.2
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHHHHH
Q ss_conf 99677883999999999999999999998628988999806898899996203015323958999088986504699896
Q 000860 819 NPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIEIFEAFDELLLMKRGGRVIYGGKLGVHSQIMIDYF 898 (1250)
Q Consensus 819 ~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~v~~l~~gg~~~~~g~~~~~~~~~~~yf 898 (1250)
+.+++++||.-. |+..+...+.+.+.+. ..+..+|+++++++. +... +.++ -......++.. .++.++.
T Consensus 115 ~~kviiIde~d~-l~~~~q~~Llk~lE~~-~~~~~~il~tn~~~~-i~~~-----i~SR-c~~i~~~~~~~--~~i~~~l 183 (239)
T d1njfa_ 115 RFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQK-LPVT-----ILSR-CLQFHLKALDV--EQIRHQL 183 (239)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CCEEEEEECCCC-CCHHHHHHHHHHHHCC-CCCEEEEEECCCCCC-CCHH-----HHHH-HCCCCCCCCCH--HHHHHHH
T ss_conf 987999978110-8999999999998568-988699997388563-6765-----7612-10222246767--8766688
Q ss_pred HH
Q ss_conf 21
Q 000860 899 QG 900 (1250)
Q Consensus 899 ~~ 900 (1250)
..
T Consensus 184 ~~ 185 (239)
T d1njfa_ 184 EH 185 (239)
T ss_dssp HH
T ss_pred HH
T ss_conf 78
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=85.23 E-value=0.2 Score=22.34 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99827999996899989819989
Q 000860 2 TLLLGPPGSGKSTLLLALAGKLD 24 (1250)
Q Consensus 2 taIiGpsGSGKSTLL~~L~G~~~ 24 (1250)
.+|=|+-||||||+++.|.-.+.
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988877889999999999873
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=85.02 E-value=0.19 Score=22.43 Aligned_cols=15 Identities=27% Similarity=0.623 Sum_probs=11.9
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 999969999589999
Q 000860 691 TALVGSSGAGKTTLM 705 (1250)
Q Consensus 691 ~~i~G~sGsGKsTLl 705 (1250)
+.|.|+.||||||.+
T Consensus 17 ~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEECCCTTSCHHHHH
T ss_pred EEEEEECCCCHHHHH
T ss_conf 899962884389999
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=84.90 E-value=0.26 Score=21.66 Aligned_cols=18 Identities=56% Similarity=0.768 Sum_probs=8.6
Q ss_pred CEEEEEECCCCCCHHHHH
Q ss_conf 739999969999589999
Q 000860 688 GVLTALVGSSGAGKTTLM 705 (1250)
Q Consensus 688 G~~~~i~G~sGsGKsTLl 705 (1250)
|+....-|.||+|||||-
T Consensus 14 gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 14 GDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCCCCCE
T ss_conf 987999736778812051
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=84.84 E-value=0.22 Score=22.04 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996999958999998959999
Q 000860 690 LTALVGSSGAGKTTLMDVLAGRKT 713 (1250)
Q Consensus 690 ~~~i~G~sGsGKsTLl~~l~g~~~ 713 (1250)
.+.|=|+-|+||||+++.|+....
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999988877889999999999873
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.68 E-value=0.26 Score=21.66 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=17.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99982799999689998981998
Q 000860 1 MTLLLGPPGSGKSTLLLALAGKL 23 (1250)
Q Consensus 1 ltaIiGpsGSGKSTLL~~L~G~~ 23 (1250)
+|.+.||+|+||||++-.++...
T Consensus 62 i~e~~G~~~~GKT~l~l~~~~~~ 84 (269)
T d1mo6a1 62 VIEIYGPESSGKTTVALHAVANA 84 (269)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 69996488748899999999987
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.47 E-value=0.25 Score=21.77 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=23.9
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 89995773999996999958999998959
Q 000860 682 SGIFSPGVLTALVGSSGAGKTTLMDVLAG 710 (1250)
Q Consensus 682 s~~~~~G~~~~i~G~sGsGKsTLl~~l~g 710 (1250)
=..+-.|+..+|.|++|.|||+|+.-++.
T Consensus 62 l~pig~GQr~~If~~~g~GKt~ll~~~~~ 90 (285)
T d2jdia3 62 LVPIGRGQRELIIGDRQTGKTSIAIDTII 90 (285)
T ss_dssp HSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 46766787787656888885899999997
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=81.21 E-value=0.26 Score=21.59 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=22.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 999577399999699995899999895
Q 000860 683 GIFSPGVLTALVGSSGAGKTTLMDVLA 709 (1250)
Q Consensus 683 ~~~~~G~~~~i~G~sGsGKsTLl~~l~ 709 (1250)
..+-.|+..+|.|++|+|||+|+..+.
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 454677667600677888579999977
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=80.75 E-value=0.72 Score=18.86 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 9967788399999999999999999999862898899980689
Q 000860 819 NPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQP 861 (1250)
Q Consensus 819 ~p~il~lDEpTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 861 (1250)
+.++++.||.-==-| .+.+.+..+.+.|++|++..-+-
T Consensus 79 ~~dvI~IDE~QFf~d-----~i~~~~~~~~~~g~~Viv~GLd~ 116 (139)
T d2b8ta1 79 ETKVIGIDEVQFFDD-----RICEVANILAENGFVVIISGLDK 116 (139)
T ss_dssp TCCEEEECSGGGSCT-----HHHHHHHHHHHTTCEEEEECCSB
T ss_pred CCCEEEECHHHHCCH-----HHHHHHHHHHHCCCEEEEEEECC
T ss_conf 767999610343561-----58899999984485189999615
|